Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062500.t1 | XP_013467217.1 | 99.7 | 328 | 1 | 0 | 1 | 328 | 1 | 328 | 1.30E-189 | 672.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062500.t1 | O23016 | 83.5 | 328 | 54 | 0 | 1 | 328 | 1 | 328 | 1.4e-165 | 583.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062500.t1 | I3S210 | 99.7 | 328 | 1 | 0 | 1 | 328 | 1 | 328 | 9.0e-190 | 672.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062500.t1 | MTR_1g047250 | 99.695 | 328 | 1 | 0 | 1 | 328 | 1 | 328 | 0.0 | 679 |
| MS.gene062500.t1 | MTR_7g114990 | 30.915 | 317 | 200 | 9 | 5 | 317 | 17 | 318 | 7.08e-32 | 122 |
| MS.gene062500.t1 | MTR_7g114980 | 30.721 | 319 | 172 | 12 | 6 | 301 | 16 | 308 | 5.32e-28 | 112 |
| MS.gene062500.t1 | MTR_7g115010 | 29.904 | 311 | 168 | 12 | 5 | 301 | 13 | 287 | 2.15e-27 | 109 |
| MS.gene062500.t1 | MTR_1g102750 | 28.662 | 314 | 182 | 10 | 6 | 301 | 10 | 299 | 2.33e-27 | 110 |
| MS.gene062500.t1 | MTR_7g114970 | 30.164 | 305 | 189 | 9 | 6 | 301 | 12 | 301 | 4.86e-27 | 108 |
| MS.gene062500.t1 | MTR_7g114970 | 34.043 | 235 | 139 | 7 | 5 | 233 | 11 | 235 | 1.65e-26 | 106 |
| MS.gene062500.t1 | MTR_7g114970 | 34.043 | 235 | 139 | 7 | 5 | 233 | 11 | 235 | 1.73e-26 | 106 |
| MS.gene062500.t1 | MTR_7g114980 | 31.379 | 290 | 150 | 12 | 6 | 272 | 16 | 279 | 6.79e-26 | 105 |
| MS.gene062500.t1 | MTR_1g042730 | 27.147 | 361 | 208 | 11 | 1 | 318 | 61 | 409 | 1.28e-25 | 106 |
| MS.gene062500.t1 | MTR_1g102750 | 28.866 | 291 | 165 | 10 | 6 | 278 | 10 | 276 | 2.26e-25 | 103 |
| MS.gene062500.t1 | MTR_7g021680 | 27.914 | 326 | 201 | 11 | 6 | 319 | 9 | 312 | 7.14e-23 | 97.4 |
| MS.gene062500.t1 | MTR_7g021820 | 27.914 | 326 | 201 | 11 | 6 | 319 | 9 | 312 | 7.14e-23 | 97.4 |
| MS.gene062500.t1 | MTR_4g092750 | 26.623 | 308 | 188 | 11 | 1 | 298 | 1 | 280 | 4.89e-22 | 94.7 |
| MS.gene062500.t1 | MTR_7g021850 | 27.103 | 321 | 205 | 11 | 6 | 316 | 9 | 310 | 3.54e-21 | 92.8 |
| MS.gene062500.t1 | MTR_4g092750 | 26.710 | 307 | 187 | 11 | 1 | 297 | 1 | 279 | 7.47e-21 | 91.3 |
| MS.gene062500.t1 | MTR_4g092750 | 28.319 | 226 | 141 | 7 | 1 | 216 | 1 | 215 | 3.27e-20 | 89.4 |
| MS.gene062500.t1 | MTR_7g114970 | 33.838 | 198 | 115 | 7 | 5 | 196 | 11 | 198 | 1.45e-18 | 82.8 |
| MS.gene062500.t1 | MTR_8g088160 | 29.412 | 255 | 143 | 8 | 11 | 232 | 49 | 299 | 7.21e-18 | 83.2 |
| MS.gene062500.t1 | MTR_7g114970 | 28.095 | 210 | 134 | 5 | 96 | 301 | 11 | 207 | 1.28e-17 | 81.3 |
| MS.gene062500.t1 | MTR_3g449790 | 28.617 | 311 | 191 | 10 | 6 | 299 | 40 | 336 | 7.06e-17 | 80.9 |
| MS.gene062500.t1 | MTR_3g092140 | 24.633 | 341 | 218 | 14 | 2 | 323 | 35 | 355 | 3.14e-16 | 79.7 |
| MS.gene062500.t1 | MTR_3g449790 | 28.617 | 311 | 185 | 10 | 6 | 299 | 40 | 330 | 1.00e-15 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062500.t1 | AT1G04690 | 83.537 | 328 | 54 | 0 | 1 | 328 | 1 | 328 | 0.0 | 591 |
| MS.gene062500.t1 | AT1G60680 | 27.492 | 331 | 214 | 10 | 6 | 327 | 12 | 325 | 1.84e-25 | 104 |
| MS.gene062500.t1 | AT1G60690 | 28.701 | 331 | 209 | 11 | 6 | 327 | 12 | 324 | 3.60e-25 | 103 |
| MS.gene062500.t1 | AT1G60710 | 28.614 | 332 | 210 | 10 | 5 | 327 | 11 | 324 | 5.43e-25 | 103 |
| MS.gene062500.t1 | AT1G60750 | 28.963 | 328 | 196 | 11 | 6 | 327 | 13 | 309 | 7.56e-25 | 102 |
| MS.gene062500.t1 | AT1G04420 | 28.056 | 360 | 206 | 12 | 1 | 318 | 56 | 404 | 4.87e-24 | 102 |
| MS.gene062500.t1 | AT4G33670 | 26.284 | 331 | 202 | 12 | 1 | 318 | 4 | 305 | 2.20e-22 | 95.9 |
| MS.gene062500.t1 | AT1G60730 | 27.864 | 323 | 204 | 11 | 6 | 318 | 12 | 315 | 2.36e-21 | 93.6 |
| MS.gene062500.t1 | AT1G10810 | 27.707 | 314 | 184 | 11 | 6 | 301 | 12 | 300 | 7.76e-21 | 92.0 |
| MS.gene062500.t1 | AT1G60680 | 30.455 | 220 | 135 | 7 | 5 | 217 | 11 | 219 | 9.54e-20 | 87.0 |
| MS.gene062500.t1 | AT5G53580 | 26.623 | 308 | 189 | 12 | 11 | 299 | 45 | 334 | 8.90e-18 | 83.6 |
| MS.gene062500.t1 | AT1G60730 | 26.239 | 343 | 204 | 12 | 6 | 318 | 12 | 335 | 4.31e-17 | 81.6 |
| MS.gene062500.t1 | AT1G10810 | 29.358 | 218 | 135 | 7 | 5 | 215 | 11 | 216 | 1.16e-16 | 79.0 |
| MS.gene062500.t1 | AT1G06690 | 26.582 | 316 | 191 | 12 | 6 | 299 | 51 | 347 | 2.08e-16 | 79.7 |
| MS.gene062500.t1 | AT1G10810 | 28.968 | 252 | 139 | 10 | 65 | 301 | 22 | 248 | 3.43e-15 | 75.1 |
Find 92 sgRNAs with CRISPR-Local
Find 348 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTTCGACAAAGATCTTC+TGG | 0.250345 | 1.2:-30057412 | MS.gene062500:CDS |
| CTTGCGTCTGGAGTCCTTAC+TGG | 0.288666 | 1.2:-30055029 | MS.gene062500:CDS |
| CTTCCCCTGTATTCTAGTTA+TGG | 0.322795 | 1.2:-30055077 | MS.gene062500:CDS |
| TCCAAAGCAAAACGGCTGTC+TGG | 0.347444 | 1.2:+30054981 | None:intergenic |
| ACGCCCAGTTCATCTGCTAT+TGG | 0.347932 | 1.2:+30054334 | None:intergenic |
| AAGCTTGGGCTGTTGCTAAT+AGG | 0.362015 | 1.2:-30057163 | MS.gene062500:CDS |
| TGTTGCTAATAGGTTGGATT+TGG | 0.368859 | 1.2:-30057153 | MS.gene062500:CDS |
| CTGTATGAATCAGCGCGCTT+TGG | 0.380687 | 1.2:+30052826 | None:intergenic |
| TACAACAACTTAGGCCGTTC+GGG | 0.381490 | 1.2:-30057638 | MS.gene062500:CDS |
| TACGGAGCATGGGTAAGTTT+CGG | 0.389998 | 1.2:-30057593 | MS.gene062500:CDS |
| CGCCGTGGTCGCGGCAGCAT+TGG | 0.390486 | 1.2:+30057534 | None:intergenic |
| CCAAAGCAAAACGGCTGTCT+GGG | 0.403649 | 1.2:+30054982 | None:intergenic |
| CTGTATTCTAGTTATGGAAT+TGG | 0.406038 | 1.2:-30055071 | MS.gene062500:CDS |
| GGACAAGGACCGAATGATAA+GGG | 0.406974 | 1.2:-30057386 | MS.gene062500:CDS |
| GAAGCCAATAGCAGATGAAC+TGG | 0.416791 | 1.2:-30054338 | MS.gene062500:CDS |
| CTTGACAGCCCCTTATCATT+CGG | 0.419365 | 1.2:+30057377 | None:intergenic |
| GCAATTGAAAGCTGTGCTAA+TGG | 0.419930 | 1.2:+30054310 | None:intergenic |
| GGTAAGTTTCGGCAACCAAC+TGG | 0.421233 | 1.2:-30057582 | MS.gene062500:CDS |
| CAGATAACTGACGAAACATT+AGG | 0.423044 | 1.2:+30054271 | None:intergenic |
| GTCAGCAGATTACTGAAGCT+TGG | 0.429632 | 1.2:-30057178 | MS.gene062500:CDS |
| CCCATGCTCCGTAGGAAAGT+TGG | 0.433619 | 1.2:+30057603 | None:intergenic |
| ATACAACAACTTAGGCCGTT+CGG | 0.436879 | 1.2:-30057639 | MS.gene062500:CDS |
| GGTTGATGATGTGCTCAAAA+AGG | 0.442188 | 1.2:-30054371 | MS.gene062500:CDS |
| ACTTGGAGTCCACTTGCGTC+TGG | 0.442488 | 1.2:-30055041 | MS.gene062500:CDS |
| CGGTCGCGCAGAGGAGATCA+TGG | 0.447884 | 1.2:-30057477 | MS.gene062500:CDS |
| CAATTCCATAACTAGAATAC+AGG | 0.449939 | 1.2:+30055072 | None:intergenic |
| TACTCAGGCTGTTCAACAAC+CGG | 0.454974 | 1.2:+30057125 | None:intergenic |
| AGGACAAGGACCGAATGATA+AGG | 0.463435 | 1.2:-30057387 | MS.gene062500:CDS |
| TCAGCAGATTACTGAAGCTT+GGG | 0.470452 | 1.2:-30057177 | MS.gene062500:CDS |
| GAAAGCGTCGTTGAAGAGGC+TGG | 0.471216 | 1.2:-30057333 | MS.gene062500:CDS |
| TGTTTCGACAAAGATCTTCT+GGG | 0.471444 | 1.2:-30057411 | MS.gene062500:CDS |
| GATCTCCTCTGCGCGACCGT+TGG | 0.472405 | 1.2:+30057481 | None:intergenic |
| CTGAGTATAACCTCTTGAAC+AGG | 0.474892 | 1.2:-30057109 | MS.gene062500:CDS |
| TGGCGCTACAAAAGAGTCTC+AGG | 0.481315 | 1.2:-30054248 | MS.gene062500:intron |
| TAGGTTGGATTTGGTTGGAC+CGG | 0.483964 | 1.2:-30057144 | MS.gene062500:CDS |
| GCTCTTACAGTCTCCTCAAT+CGG | 0.490523 | 1.2:+30057260 | None:intergenic |
| GAGGCTGGGGATGGAGTATG+TGG | 0.500180 | 1.2:-30057318 | MS.gene062500:CDS |
| GCCAACTTTCCTACGGAGCA+TGG | 0.502151 | 1.2:-30057604 | MS.gene062500:CDS |
| GCTAATAGGTTGGATTTGGT+TGG | 0.504199 | 1.2:-30057149 | MS.gene062500:CDS |
| TTAGATTCATGAGAATATGA+AGG | 0.510165 | 1.2:-30052917 | MS.gene062500:intron |
| TTGGGCTGTTGCTAATAGGT+TGG | 0.517426 | 1.2:-30057159 | MS.gene062500:CDS |
| TTGCTTCTTTGACATCCAGT+TGG | 0.517542 | 1.2:+30057567 | None:intergenic |
| TTACCTTGTGCCTGTTCAAG+AGG | 0.520428 | 1.2:+30057099 | None:intergenic |
| AAAGCGTCGTTGAAGAGGCT+GGG | 0.522114 | 1.2:-30057332 | MS.gene062500:CDS |
| GAATCTTGCATCTCGATCAC+TGG | 0.523410 | 1.2:-30054392 | MS.gene062500:CDS |
| AAGCAATCAAAAGCCTTGAC+TGG | 0.525793 | 1.2:-30057451 | MS.gene062500:CDS |
| GGATGTTTGTACGCCGATTG+AGG | 0.528436 | 1.2:-30057273 | MS.gene062500:CDS |
| ACTACTAACTCCTGCTGTGA+TGG | 0.528455 | 1.2:-30052878 | MS.gene062500:CDS |
| TGTCGGAGCGTTTCCAGTCA+AGG | 0.533084 | 1.2:+30057438 | None:intergenic |
| AACTGACGAAACATTAGGAT+TGG | 0.534487 | 1.2:+30054276 | None:intergenic |
| TGGATGTTGTGTATTGTCAT+AGG | 0.535817 | 1.2:-30057298 | MS.gene062500:CDS |
| TCAATCTTCTCCATCACAGC+AGG | 0.538974 | 1.2:+30052868 | None:intergenic |
| CTTACTGGAAAATACAAGAA+AGG | 0.542569 | 1.2:-30055014 | MS.gene062500:CDS |
| AGAAGTTTACGCCGTGGTCG+CGG | 0.546157 | 1.2:+30057525 | None:intergenic |
| ATGGAATTGGTCTCACCACT+TGG | 0.547573 | 1.2:-30055058 | MS.gene062500:CDS |
| GGTCGCGGCAGCATTGGAGA+AGG | 0.547765 | 1.2:+30057540 | None:intergenic |
| CTCCAATGCTGCCGCGACCA+CGG | 0.550788 | 1.2:-30057536 | MS.gene062500:CDS |
| GGACGAAAGCGTCGTTGAAG+AGG | 0.555165 | 1.2:-30057337 | MS.gene062500:CDS |
| AAGATGCAATACAACAACTT+AGG | 0.560476 | 1.2:-30057647 | MS.gene062500:CDS |
| TGCTGTGATGGAGAAGATTG+AGG | 0.560987 | 1.2:-30052866 | MS.gene062500:CDS |
| CGAATGATAAGGGGCTGTCA+AGG | 0.562099 | 1.2:-30057376 | MS.gene062500:CDS |
| TCAAGGAAGCATATTGTGGA+AGG | 0.565585 | 1.2:-30057359 | MS.gene062500:CDS |
| CAAAGCAAAACGGCTGTCTG+GGG | 0.571435 | 1.2:+30054983 | None:intergenic |
| AAGATCTTCTGGGGAGGACA+AGG | 0.575779 | 1.2:-30057401 | MS.gene062500:CDS |
| GTCGTTGAAGAGGCTGGGGA+TGG | 0.582056 | 1.2:-30057327 | MS.gene062500:CDS |
| CCAACTTTCCTACGGAGCAT+GGG | 0.588169 | 1.2:-30057603 | MS.gene062500:CDS |
| GTCGCGGCAGCATTGGAGAA+GGG | 0.588190 | 1.2:+30057541 | None:intergenic |
| AAGCGTCGTTGAAGAGGCTG+GGG | 0.588685 | 1.2:-30057331 | MS.gene062500:CDS |
| TAGCACAGCTTTCAATTGCG+TGG | 0.595497 | 1.2:-30054306 | MS.gene062500:CDS |
| TCAATCGGCGTACAAACATC+CGG | 0.597960 | 1.2:+30057275 | None:intergenic |
| GTTTCGACAAAGATCTTCTG+GGG | 0.610966 | 1.2:-30057410 | MS.gene062500:CDS |
| AAAGTCAGCCAACTTTCCTA+CGG | 0.613030 | 1.2:-30057611 | MS.gene062500:CDS |
| CTTTGTCGAAACAACGATGT+CGG | 0.616365 | 1.2:+30057421 | None:intergenic |
| TGTTGTGTATTGTCATAGGC+CGG | 0.619959 | 1.2:-30057294 | MS.gene062500:CDS |
| AAAGCAAAACGGCTGTCTGG+GGG | 0.620635 | 1.2:+30054984 | None:intergenic |
| AATGTTTCGTCAGTTATCTG+TGG | 0.624642 | 1.2:-30054268 | MS.gene062500:CDS |
| GAAACTTACCCATGCTCCGT+AGG | 0.626170 | 1.2:+30057595 | None:intergenic |
| GGTCGCGCAGAGGAGATCAT+GGG | 0.626550 | 1.2:-30057476 | MS.gene062500:CDS |
| GTAAGGACTCCAGACGCAAG+TGG | 0.627062 | 1.2:+30055032 | None:intergenic |
| AAGCCAATAGCAGATGAACT+GGG | 0.634352 | 1.2:-30054337 | MS.gene062500:CDS |
| CTACGCCAACGGTCGCGCAG+AGG | 0.636382 | 1.2:-30057486 | MS.gene062500:CDS |
| GACAAGGACCGAATGATAAG+GGG | 0.636923 | 1.2:-30057385 | MS.gene062500:CDS |
| GCTGTCAAGGAAGCATATTG+TGG | 0.641699 | 1.2:-30057363 | MS.gene062500:CDS |
| TCGACAAAGATCTTCTGGGG+AGG | 0.642624 | 1.2:-30057407 | MS.gene062500:CDS |
| CAAGGAAGCATATTGTGGAA+GGG | 0.642907 | 1.2:-30057358 | MS.gene062500:CDS |
| CTGTTCAAGAGGTTATACTC+AGG | 0.655970 | 1.2:+30057110 | None:intergenic |
| AACGCAGAAGTCTACGCCAA+CGG | 0.656202 | 1.2:-30057497 | MS.gene062500:CDS |
| TAACCTCTTGAACAGGCACA+AGG | 0.657377 | 1.2:-30057102 | MS.gene062500:intron |
| AGACGCAAGTGGACTCCAAG+TGG | 0.662326 | 1.2:+30055043 | None:intergenic |
| AATTCCATAACTAGAATACA+GGG | 0.664677 | 1.2:+30055073 | None:intergenic |
| TGTCGAAGAAGTTTACGCCG+TGG | 0.679789 | 1.2:+30057519 | None:intergenic |
| ATTCCATAACTAGAATACAG+GGG | 0.746347 | 1.2:+30055074 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAATTAAATTTAAAA+AGG | - | chr1.2:30054759-30054778 | MS.gene062500:intron | 0.0% |
| !! | TTTAAAAAGAAAACTAAAAA+AGG | + | chr1.2:30055539-30055558 | None:intergenic | 10.0% |
| !!! | TAAGCTATTTTTATATAAAA+AGG | + | chr1.2:30054044-30054063 | None:intergenic | 10.0% |
| !!! | TATTATAACCATAATAATTT+TGG | - | chr1.2:30053441-30053460 | MS.gene062500:intron | 10.0% |
| !! | AAAATAAAAGCTTATTTAGT+TGG | - | chr1.2:30053605-30053624 | MS.gene062500:intron | 15.0% |
| !! | ACAAGGTAATAAAAAATTTA+AGG | - | chr1.2:30055513-30055532 | MS.gene062500:intron | 15.0% |
| !! | AGAACCATATATATATATAT+TGG | + | chr1.2:30053949-30053968 | None:intergenic | 15.0% |
| !! | ATAACATTGTTAAAATTGTT+GGG | + | chr1.2:30054506-30054525 | None:intergenic | 15.0% |
| !! | TATAACATTGTTAAAATTGT+TGG | + | chr1.2:30054507-30054526 | None:intergenic | 15.0% |
| !! | TCATAAACTACATTTAAATT+TGG | + | chr1.2:30055629-30055648 | None:intergenic | 15.0% |
| !! | TTAATAAAAAATTAAACCCT+GGG | - | chr1.2:30057181-30057200 | MS.gene062500:CDS | 15.0% |
| !! | TTCTCCAATATATATATATA+TGG | - | chr1.2:30053942-30053961 | MS.gene062500:intron | 15.0% |
| !!! | GAATAACATATAAACTATTT+TGG | - | chr1.2:30055745-30055764 | MS.gene062500:intron | 15.0% |
| !!! | TTTACTTTTTGTTGAAAATT+GGG | - | chr1.2:30054212-30054231 | MS.gene062500:intron | 15.0% |
| !!! | TTTTACTTTTTGTTGAAAAT+TGG | - | chr1.2:30054211-30054230 | MS.gene062500:intron | 15.0% |
| !!! | TTTTATCAATAGAATCAAAA+GGG | + | chr1.2:30054689-30054708 | None:intergenic | 15.0% |
| !!! | TTTTTATCAATAGAATCAAA+AGG | + | chr1.2:30054690-30054709 | None:intergenic | 15.0% |
| !! | AACATAAAGTATGTGATATA+AGG | + | chr1.2:30056955-30056974 | None:intergenic | 20.0% |
| !! | ACTAATAAATACTGAGAATT+AGG | - | chr1.2:30056493-30056512 | MS.gene062500:intron | 20.0% |
| !! | AGATAAAAGTTCCATATAAA+TGG | + | chr1.2:30057306-30057325 | None:intergenic | 20.0% |
| !! | AGATTAATCAAAACACTAAA+CGG | + | chr1.2:30054888-30054907 | None:intergenic | 20.0% |
| !! | ATCAGAGAATTAAAACAAAA+AGG | + | chr1.2:30055126-30055145 | None:intergenic | 20.0% |
| !! | CAAGAAATTAAAACAAAGAA+TGG | - | chr1.2:30056628-30056647 | MS.gene062500:intron | 20.0% |
| !! | CTAATAAATACTGAGAATTA+GGG | - | chr1.2:30056494-30056513 | MS.gene062500:intron | 20.0% |
| !! | GTTAATAAAAAATTAAACCC+TGG | - | chr1.2:30057180-30057199 | MS.gene062500:CDS | 20.0% |
| !! | TAAAAAGGAACTAATGTTAA+GGG | - | chr1.2:30054774-30054793 | MS.gene062500:intron | 20.0% |
| !! | TAACATTGTTAAAATTGTTG+GGG | + | chr1.2:30054505-30054524 | None:intergenic | 20.0% |
| !! | TAATAAATACTGAGAATTAG+GGG | - | chr1.2:30056495-30056514 | MS.gene062500:intron | 20.0% |
| !! | TAGATATATGTCCATTTATA+TGG | - | chr1.2:30057292-30057311 | MS.gene062500:CDS | 20.0% |
| !! | TAGATATCGCAATTTAAATT+TGG | + | chr1.2:30054721-30054740 | None:intergenic | 20.0% |
| !! | TCCTAAATCCAAAATTATTA+TGG | + | chr1.2:30053452-30053471 | None:intergenic | 20.0% |
| !! | TTAAAAAGGAACTAATGTTA+AGG | - | chr1.2:30054773-30054792 | MS.gene062500:intron | 20.0% |
| !!! | ACCATAATAATTTTGGATTT+AGG | - | chr1.2:30053448-30053467 | MS.gene062500:intron | 20.0% |
| !!! | ATGAATTTTGTTATTGATCA+AGG | - | chr1.2:30053230-30053249 | MS.gene062500:intron | 20.0% |
| !!! | ATTTTCTTGTTTTAGTTTAG+TGG | - | chr1.2:30054171-30054190 | MS.gene062500:intron | 20.0% |
| !!! | GTAGTTCTTTTTTTTTGTTT+TGG | - | chr1.2:30054832-30054851 | MS.gene062500:intron | 20.0% |
| !!! | TATATATATATGGTTCTGAT+TGG | - | chr1.2:30053952-30053971 | MS.gene062500:intron | 20.0% |
| !!! | TTTTTCTCTTCTTTATTCTT+TGG | + | chr1.2:30057268-30057287 | None:intergenic | 20.0% |
| ! | AACCTATATGTCAATTTAGA+AGG | + | chr1.2:30055950-30055969 | None:intergenic | 25.0% |
| ! | AATTCCATAACTAGAATACA+GGG | + | chr1.2:30055396-30055415 | None:intergenic | 25.0% |
| ! | AGTACACAACATATCAAATA+TGG | + | chr1.2:30053777-30053796 | None:intergenic | 25.0% |
| ! | ATAGAGATCATAATATGTGA+GGG | - | chr1.2:30055781-30055800 | MS.gene062500:intron | 25.0% |
| ! | GAAAAAAGTTCAATCAAAGT+TGG | - | chr1.2:30054810-30054829 | MS.gene062500:intron | 25.0% |
| ! | GTACACAACATATCAAATAT+GGG | + | chr1.2:30053776-30053795 | None:intergenic | 25.0% |
| ! | GTATGCAAAAAAAATCAGTT+GGG | + | chr1.2:30054949-30054968 | None:intergenic | 25.0% |
| ! | TAAAGTATGTGATATAAGGA+TGG | + | chr1.2:30056951-30056970 | None:intergenic | 25.0% |
| ! | TACCAATTTATCATCCATAA+GGG | + | chr1.2:30053680-30053699 | None:intergenic | 25.0% |
| ! | TCAACAAATCTCAACAAAAA+TGG | + | chr1.2:30053401-30053420 | None:intergenic | 25.0% |
| ! | TGCAATAAAATAGAAGACAA+AGG | - | chr1.2:30056852-30056871 | MS.gene062500:intron | 25.0% |
| ! | TGTTAAGGGTAAATTTGTAT+AGG | - | chr1.2:30054788-30054807 | MS.gene062500:intron | 25.0% |
| ! | TTAGATTCATGAGAATATGA+AGG | - | chr1.2:30057549-30057568 | MS.gene062500:CDS | 25.0% |
| ! | TTATCCATATCAACATATAG+TGG | + | chr1.2:30055081-30055100 | None:intergenic | 25.0% |
| !! | ATTCTCAAGACATTTTTACA+AGG | - | chr1.2:30056252-30056271 | MS.gene062500:intron | 25.0% |
| !! | ATTTTTACAAGGACATCATT+TGG | - | chr1.2:30056263-30056282 | MS.gene062500:intron | 25.0% |
| !! | TGCTGATATGTGTAAATTTT+CGG | + | chr1.2:30055905-30055924 | None:intergenic | 25.0% |
| !! | TGTAATTTTCCAAAGCAAAA+CGG | + | chr1.2:30055496-30055515 | None:intergenic | 25.0% |
| !! | TTGATGTCATTCTTAATTTG+AGG | - | chr1.2:30057458-30057477 | MS.gene062500:CDS | 25.0% |
| !! | TTTTTACAAGGACATCATTT+GGG | - | chr1.2:30056264-30056283 | MS.gene062500:intron | 25.0% |
| !!! | AATGTTCTTTGTTTTCCTAA+TGG | - | chr1.2:30056439-30056458 | MS.gene062500:intron | 25.0% |
| !!! | AATTAGACTAGCTCTATATA+AGG | - | chr1.2:30056658-30056677 | MS.gene062500:intron | 25.0% |
| !!! | ATGCGTCTTTTCATTTTAAT+TGG | - | chr1.2:30055307-30055326 | MS.gene062500:intron | 25.0% |
| !!! | ATTAGACTAGCTCTATATAA+GGG | - | chr1.2:30056659-30056678 | MS.gene062500:intron | 25.0% |
| !!! | ATTTTAGCTGAAACAATCAT+TGG | + | chr1.2:30055208-30055227 | None:intergenic | 25.0% |
| !!! | ATTTTGTTATTGATCAAGGT+TGG | - | chr1.2:30053234-30053253 | MS.gene062500:intron | 25.0% |
| !!! | GTGTTTTGATTAATCTCTAT+CGG | - | chr1.2:30054892-30054911 | MS.gene062500:intron | 25.0% |
| !!! | TTTTGCTTTGGAAAATTACA+AGG | - | chr1.2:30055496-30055515 | MS.gene062500:intron | 25.0% |
| !!! | TTTTGTTATTGATCAAGGTT+GGG | - | chr1.2:30053235-30053254 | MS.gene062500:intron | 25.0% |
| AAAAAACTTGTGAAAACCAG+TGG | + | chr1.2:30053905-30053924 | None:intergenic | 30.0% | |
| AGGATTGAACCAATATATGT+TGG | - | chr1.2:30057099-30057118 | MS.gene062500:intron | 30.0% | |
| ATCGGGTAATAACTGATATA+AGG | + | chr1.2:30057219-30057238 | None:intergenic | 30.0% | |
| ATGAAGAGTTAGGTCAATTT+CGG | - | chr1.2:30055681-30055700 | MS.gene062500:intron | 30.0% | |
| ATGGATGATAAATTGGTACT+TGG | - | chr1.2:30053682-30053701 | MS.gene062500:intron | 30.0% | |
| ATTCCATAACTAGAATACAG+GGG | + | chr1.2:30055395-30055414 | None:intergenic | 30.0% | |
| CAAACTTGTGACTTTACTTA+AGG | + | chr1.2:30057148-30057167 | None:intergenic | 30.0% | |
| CAATTCCATAACTAGAATAC+AGG | + | chr1.2:30055397-30055416 | None:intergenic | 30.0% | |
| CCACTTAAACCAACATATAT+TGG | + | chr1.2:30057111-30057130 | None:intergenic | 30.0% | |
| CGTATGCAAAAAAAATCAGT+TGG | + | chr1.2:30054950-30054969 | None:intergenic | 30.0% | |
| CTCAGTAATCTAAACAAAAG+AGG | + | chr1.2:30056017-30056036 | None:intergenic | 30.0% | |
| CTTACTGGAAAATACAAGAA+AGG | - | chr1.2:30055452-30055471 | MS.gene062500:intron | 30.0% | |
| GATAGAAGATGGAATGATTT+GGG | - | chr1.2:30055655-30055674 | MS.gene062500:intron | 30.0% | |
| GATAGAGATCATAATATGTG+AGG | - | chr1.2:30055780-30055799 | MS.gene062500:intron | 30.0% | |
| GATTCTATTGACATGTTTAG+TGG | - | chr1.2:30054578-30054597 | MS.gene062500:intron | 30.0% | |
| GCAATCAATCATTACAGTTA+CGG | + | chr1.2:30055928-30055947 | None:intergenic | 30.0% | |
| GGTTAAATGAGATTTAGTGA+AGG | + | chr1.2:30055235-30055254 | None:intergenic | 30.0% | |
| GTACCAATTTATCATCCATA+AGG | + | chr1.2:30053681-30053700 | None:intergenic | 30.0% | |
| GTTTCCACTATATGTTGATA+TGG | - | chr1.2:30055074-30055093 | MS.gene062500:CDS | 30.0% | |
| TACAATACACCAATAATGGT+GGG | - | chr1.2:30054352-30054371 | MS.gene062500:CDS | 30.0% | |
| TAGAGATCATAATATGTGAG+GGG | - | chr1.2:30055782-30055801 | MS.gene062500:intron | 30.0% | |
| TCATGTACGACTAAAATGTT+TGG | - | chr1.2:30054473-30054492 | MS.gene062500:intron | 30.0% | |
| TCGGGTAATAACTGATATAA+GGG | + | chr1.2:30057218-30057237 | None:intergenic | 30.0% | |
| TGATAGAAGATGGAATGATT+TGG | - | chr1.2:30055654-30055673 | MS.gene062500:intron | 30.0% | |
| TGCCTTCTAAATTGACATAT+AGG | - | chr1.2:30055945-30055964 | MS.gene062500:intron | 30.0% | |
| TTAATCAAAACACTAAACGG+CGG | + | chr1.2:30054885-30054904 | None:intergenic | 30.0% | |
| TTCCCTTATGGATGATAAAT+TGG | - | chr1.2:30053675-30053694 | MS.gene062500:intron | 30.0% | |
| TTCTATCCATCATACAACAA+TGG | + | chr1.2:30055979-30055998 | None:intergenic | 30.0% | |
| TTTATTCTTTGGTCTAACCT+TGG | + | chr1.2:30057257-30057276 | None:intergenic | 30.0% | |
| TTTGATATGTTGTGTACTGT+TGG | - | chr1.2:30053779-30053798 | MS.gene062500:intron | 30.0% | |
| ! | ACTGAAAGTACAACCAATTA+TGG | - | chr1.2:30056780-30056799 | MS.gene062500:intron | 30.0% |
| ! | AGTGACGTTTTCGTTATTAA+AGG | - | chr1.2:30056599-30056618 | MS.gene062500:intron | 30.0% |
| ! | ATTGGTTCAATCCTTTCAAT+AGG | + | chr1.2:30057093-30057112 | None:intergenic | 30.0% |
| ! | ATTTGGGTTTATGAAGAGTT+AGG | - | chr1.2:30055671-30055690 | MS.gene062500:intron | 30.0% |
| ! | CTGTATTCTAGTTATGGAAT+TGG | - | chr1.2:30055395-30055414 | MS.gene062500:intron | 30.0% |
| ! | CTTTCTTGTATTTTCCAGTA+AGG | + | chr1.2:30055454-30055473 | None:intergenic | 30.0% |
| ! | GGATAGAAATGGAATTGTTT+TGG | - | chr1.2:30055991-30056010 | MS.gene062500:intron | 30.0% |
| ! | TGAAAAGTTTTCATGCCATT+AGG | + | chr1.2:30056457-30056476 | None:intergenic | 30.0% |
| ! | TTCTTCACTGTTTCTTATGA+TGG | - | chr1.2:30055574-30055593 | MS.gene062500:intron | 30.0% |
| !! | ACTATTTTGGATCGTTAACT+AGG | - | chr1.2:30055758-30055777 | MS.gene062500:intron | 30.0% |
| !! | CCAATATATGTTGGTTTAAG+TGG | - | chr1.2:30057108-30057127 | MS.gene062500:CDS | 30.0% |
| !! | CTGGTTTTCACAAGTTTTTT+TGG | - | chr1.2:30053905-30053924 | MS.gene062500:intron | 30.0% |
| !! | TGGTTTTTGTTTCGATTTTC+TGG | - | chr1.2:30056524-30056543 | MS.gene062500:intron | 30.0% |
| !! | TGTTGTATGATGGATAGAAA+TGG | - | chr1.2:30055980-30055999 | MS.gene062500:intron | 30.0% |
| !!! | TCTTGTTTTAGTTTAGTGGT+TGG | - | chr1.2:30054175-30054194 | MS.gene062500:intron | 30.0% |
| AAAGATGCAAATAGACTGTG+AGG | - | chr1.2:30056717-30056736 | MS.gene062500:intron | 35.0% | |
| AACTGACGAAACATTAGGAT+TGG | + | chr1.2:30056193-30056212 | None:intergenic | 35.0% | |
| AATGGGTCATCATCCATAAT+TGG | + | chr1.2:30056796-30056815 | None:intergenic | 35.0% | |
| AATGTTTCGTCAGTTATCTG+TGG | - | chr1.2:30056198-30056217 | MS.gene062500:intron | 35.0% | |
| ACACACACACACACAAATAA+GGG | + | chr1.2:30057373-30057392 | None:intergenic | 35.0% | |
| AGAAACAGTGAAGAAAGACA+CGG | + | chr1.2:30055569-30055588 | None:intergenic | 35.0% | |
| AGCCTCTTGTGTAAAAAACA+GGG | - | chr1.2:30054319-30054338 | MS.gene062500:CDS | 35.0% | |
| AGTGTGTAAATATGTGTTGC+AGG | - | chr1.2:30055352-30055371 | MS.gene062500:intron | 35.0% | |
| ATCATCCATAAGGGAAAAAG+TGG | + | chr1.2:30053671-30053690 | None:intergenic | 35.0% | |
| ATCCGAACTCCAAATTATCA+GGG | + | chr1.2:30055165-30055184 | None:intergenic | 35.0% | |
| ATGAGCATACAGTAACCAAT+TGG | + | chr1.2:30055265-30055284 | None:intergenic | 35.0% | |
| ATGGATTTATCCAAGTGGTA+AGG | + | chr1.2:30055022-30055041 | None:intergenic | 35.0% | |
| ATTTAACCAGTTGAGCCAAT+TGG | - | chr1.2:30055247-30055266 | MS.gene062500:intron | 35.0% | |
| CACTTGGATAAATCCATTGT+TGG | - | chr1.2:30055025-30055044 | MS.gene062500:CDS | 35.0% | |
| CAGATAACTGACGAAACATT+AGG | + | chr1.2:30056198-30056217 | None:intergenic | 35.0% | |
| CGGGTAATAACTGATATAAG+GGG | + | chr1.2:30057217-30057236 | None:intergenic | 35.0% | |
| CTAGACAAAAAAGTTTGAGG+TGG | + | chr1.2:30053872-30053891 | None:intergenic | 35.0% | |
| CTATTGACATGTTTAGTGGT+TGG | - | chr1.2:30054582-30054601 | MS.gene062500:intron | 35.0% | |
| CTTGTGTAAAAAACAGGGTA+AGG | - | chr1.2:30054324-30054343 | MS.gene062500:CDS | 35.0% | |
| GAAAAGAAGCCCTGATAATT+TGG | - | chr1.2:30055153-30055172 | MS.gene062500:intron | 35.0% | |
| GAATGACATCAATTGCTTCA+AGG | + | chr1.2:30057450-30057469 | None:intergenic | 35.0% | |
| GAGCTAGACAAAAAAGTTTG+AGG | + | chr1.2:30053875-30053894 | None:intergenic | 35.0% | |
| GCAAAAAAAATCAGTTGGGA+GGG | + | chr1.2:30054945-30054964 | None:intergenic | 35.0% | |
| GGGTAATAACTGATATAAGG+GGG | + | chr1.2:30057216-30057235 | None:intergenic | 35.0% | |
| GTACAATACACCAATAATGG+TGG | - | chr1.2:30054351-30054370 | MS.gene062500:CDS | 35.0% | |
| GTTCTCCTAGATTTAAGCAT+GGG | + | chr1.2:30057428-30057447 | None:intergenic | 35.0% | |
| TATGGATGATGACCCATTTA+AGG | - | chr1.2:30056798-30056817 | MS.gene062500:intron | 35.0% | |
| TATTGACAATGCTTCTTCGA+AGG | + | chr1.2:30057057-30057076 | None:intergenic | 35.0% | |
| TGCAAAAAAAATCAGTTGGG+AGG | + | chr1.2:30054946-30054965 | None:intergenic | 35.0% | |
| TGCGTACAATACACCAATAA+TGG | - | chr1.2:30054348-30054367 | MS.gene062500:CDS | 35.0% | |
| TGGATGTTGTGTATTGTCAT+AGG | - | chr1.2:30053168-30053187 | MS.gene062500:intron | 35.0% | |
| TGGATTTATCCAAGTGGTAA+GGG | + | chr1.2:30055021-30055040 | None:intergenic | 35.0% | |
| TGTTTCGACAAAGATCTTCT+GGG | - | chr1.2:30053055-30053074 | MS.gene062500:intron | 35.0% | |
| TTCCACATGTAACAGAAAGT+TGG | + | chr1.2:30056420-30056439 | None:intergenic | 35.0% | |
| TTGGATAAATCCATTGTTGG+TGG | - | chr1.2:30055028-30055047 | MS.gene062500:CDS | 35.0% | |
| TTGTTTCGACAAAGATCTTC+TGG | - | chr1.2:30053054-30053073 | MS.gene062500:intron | 35.0% | |
| ! | AGTTTGAGACATGAGACTTT+GGG | - | chr1.2:30054538-30054557 | MS.gene062500:intron | 35.0% |
| ! | ATAACACTCTTTTGCAAGAG+TGG | - | chr1.2:30057482-30057501 | MS.gene062500:CDS | 35.0% |
| ! | ATCAAGGTTGGGCTTTTTAT+TGG | - | chr1.2:30053246-30053265 | MS.gene062500:intron | 35.0% |
| ! | CAACAATGGATTTATCCAAG+TGG | + | chr1.2:30055027-30055046 | None:intergenic | 35.0% |
| ! | GTTTTCCCATGCTTAAATCT+AGG | - | chr1.2:30057420-30057439 | MS.gene062500:CDS | 35.0% |
| ! | TATGAGAGCATGATAGAAGA+TGG | - | chr1.2:30055644-30055663 | MS.gene062500:intron | 35.0% |
| ! | TCAAGGTTGGGCTTTTTATT+GGG | - | chr1.2:30053247-30053266 | MS.gene062500:intron | 35.0% |
| ! | TGATAATTTGGAGTTCGGAT+GGG | - | chr1.2:30055165-30055184 | MS.gene062500:intron | 35.0% |
| ! | TGTTGCTAATAGGTTGGATT+TGG | - | chr1.2:30053313-30053332 | MS.gene062500:intron | 35.0% |
| ! | TTTAAGCTAGAAGAGTGTAG+TGG | - | chr1.2:30054633-30054652 | MS.gene062500:intron | 35.0% |
| !! | CATCATAGTTTCAAGTTGGT+TGG | + | chr1.2:30053753-30053772 | None:intergenic | 35.0% |
| !! | TTTTGGATTTAGGACCTGTT+TGG | - | chr1.2:30053458-30053477 | MS.gene062500:intron | 35.0% |
| !!! | CTGAGAATTAGGGGATTTTT+TGG | - | chr1.2:30056504-30056523 | MS.gene062500:intron | 35.0% |
| !!! | GTGGCTTTGGTAATTTTCAT+AGG | + | chr1.2:30053652-30053671 | None:intergenic | 35.0% |
| !!! | TACCCTGTTTTTTACACAAG+AGG | + | chr1.2:30054324-30054343 | None:intergenic | 35.0% |
| AAAGTCAGCCAACTTTCCTA+CGG | - | chr1.2:30052855-30052874 | MS.gene062500:CDS | 40.0% | |
| AAGCAATCAAAAGCCTTGAC+TGG | - | chr1.2:30053015-30053034 | MS.gene062500:intron | 40.0% | |
| AAGCCAATAGCAGATGAACT+GGG | - | chr1.2:30056129-30056148 | MS.gene062500:intron | 40.0% | |
| AAGTAACCTGTTAGGTCACT+TGG | - | chr1.2:30057025-30057044 | MS.gene062500:intron | 40.0% | |
| ACACACACACACAAATAAGG+GGG | + | chr1.2:30057371-30057390 | None:intergenic | 40.0% | |
| AGAAACAAGCCAATCCAAAC+AGG | + | chr1.2:30053475-30053494 | None:intergenic | 40.0% | |
| AGGAATGTGGTAGAGAAGAA+AGG | + | chr1.2:30056979-30056998 | None:intergenic | 40.0% | |
| AGTTGGTTGGCAGTGTTAAT+AGG | + | chr1.2:30053740-30053759 | None:intergenic | 40.0% | |
| ATACAACAACTTAGGCCGTT+CGG | - | chr1.2:30052827-30052846 | MS.gene062500:CDS | 40.0% | |
| ATAGGAAGGACATCCTACAA+TGG | + | chr1.2:30053722-30053741 | None:intergenic | 40.0% | |
| ATGTGGAGGATACCCAATAA+AGG | + | chr1.2:30054422-30054441 | None:intergenic | 40.0% | |
| ATTCACCTCAGATTATGCCA+AGG | - | chr1.2:30057237-30057256 | MS.gene062500:CDS | 40.0% | |
| CACACACACACACAAATAAG+GGG | + | chr1.2:30057372-30057391 | None:intergenic | 40.0% | |
| CACACACACACACACAAATA+AGG | + | chr1.2:30057374-30057393 | None:intergenic | 40.0% | |
| CAGATTCTGTGTACTGTTGA+TGG | - | chr1.2:30053843-30053862 | MS.gene062500:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAAAC+AGG | - | chr1.2:30054318-30054337 | MS.gene062500:CDS | 40.0% | |
| CATAAGGGAAAAAGTGGCTT+TGG | + | chr1.2:30053665-30053684 | None:intergenic | 40.0% | |
| CATCCGAACTCCAAATTATC+AGG | + | chr1.2:30055166-30055185 | None:intergenic | 40.0% | |
| CATGAAATACTTGTAGCAGC+TGG | - | chr1.2:30056351-30056370 | MS.gene062500:intron | 40.0% | |
| CTCCAACTTTCTGTTACATG+TGG | - | chr1.2:30056415-30056434 | MS.gene062500:intron | 40.0% | |
| CTGACACCATTGTTGTATGA+TGG | - | chr1.2:30055970-30055989 | MS.gene062500:intron | 40.0% | |
| CTGAGTATAACCTCTTGAAC+AGG | - | chr1.2:30053357-30053376 | MS.gene062500:intron | 40.0% | |
| CTGTTCAAGAGGTTATACTC+AGG | + | chr1.2:30053359-30053378 | None:intergenic | 40.0% | |
| CTTTGTCGAAACAACGATGT+CGG | + | chr1.2:30053048-30053067 | None:intergenic | 40.0% | |
| GAGTACTAGAGAGAGAGAAA+GGG | - | chr1.2:30056885-30056904 | MS.gene062500:intron | 40.0% | |
| GATACCCAATAAAGGGCAAA+GGG | + | chr1.2:30054414-30054433 | None:intergenic | 40.0% | |
| GATGGGAGGTAAGTAAAGTT+TGG | - | chr1.2:30055182-30055201 | MS.gene062500:intron | 40.0% | |
| GATGTGCTCAAAAAGGTTGA+TGG | - | chr1.2:30056102-30056121 | MS.gene062500:intron | 40.0% | |
| GCAATTGAAAGCTGTGCTAA+TGG | + | chr1.2:30056159-30056178 | None:intergenic | 40.0% | |
| GCAGAAGGAATTACTAGGTA+TGG | + | chr1.2:30056929-30056948 | None:intergenic | 40.0% | |
| GGTTCTCCTAGATTTAAGCA+TGG | + | chr1.2:30057429-30057448 | None:intergenic | 40.0% | |
| GTTTCGACAAAGATCTTCTG+GGG | - | chr1.2:30053056-30053075 | MS.gene062500:intron | 40.0% | |
| TACAACACACGACGAAAAGT+GGG | + | chr1.2:30056054-30056073 | None:intergenic | 40.0% | |
| TATCCAAGTGGTAAGGGATT+TGG | + | chr1.2:30055015-30055034 | None:intergenic | 40.0% | |
| TCAACAGTCGTCCTATTGAA+AGG | - | chr1.2:30057079-30057098 | MS.gene062500:intron | 40.0% | |
| TCAGCAGATTACTGAAGCTT+GGG | - | chr1.2:30053289-30053308 | MS.gene062500:intron | 40.0% | |
| TCTAACCTTGGCATAATCTG+AGG | + | chr1.2:30057245-30057264 | None:intergenic | 40.0% | |
| TGAGTACTAGAGAGAGAGAA+AGG | - | chr1.2:30056884-30056903 | MS.gene062500:intron | 40.0% | |
| TGTGATATAAGGATGGCAGA+AGG | + | chr1.2:30056944-30056963 | None:intergenic | 40.0% | |
| TGTGGAGGATACCCAATAAA+GGG | + | chr1.2:30054421-30054440 | None:intergenic | 40.0% | |
| TGTTGTGTATTGTCATAGGC+CGG | - | chr1.2:30053172-30053191 | MS.gene062500:intron | 40.0% | |
| TTGCTTCTTTGACATCCAGT+TGG | + | chr1.2:30052902-30052921 | None:intergenic | 40.0% | |
| TTTAGTCGTACATGACTCGA+GGG | + | chr1.2:30054468-30054487 | None:intergenic | 40.0% | |
| TTTGCAGCATCTTCCATTGT+AGG | - | chr1.2:30053706-30053725 | MS.gene062500:intron | 40.0% | |
| ! | AAGGTTGGGCTTTTTATTGG+GGG | - | chr1.2:30053249-30053268 | MS.gene062500:intron | 40.0% |
| ! | AGCCCTGATAATTTGGAGTT+CGG | - | chr1.2:30055160-30055179 | MS.gene062500:intron | 40.0% |
| ! | ATTCTGTGTACTGTTGATGG+CGG | - | chr1.2:30053846-30053865 | MS.gene062500:intron | 40.0% |
| ! | CAAGGAAGCATATTGTGGAA+GGG | - | chr1.2:30053108-30053127 | MS.gene062500:intron | 40.0% |
| ! | CAAGGTTGGGCTTTTTATTG+GGG | - | chr1.2:30053248-30053267 | MS.gene062500:intron | 40.0% |
| ! | CTGATAATTTGGAGTTCGGA+TGG | - | chr1.2:30055164-30055183 | MS.gene062500:intron | 40.0% |
| ! | CTTCCCCTGTATTCTAGTTA+TGG | - | chr1.2:30055389-30055408 | MS.gene062500:intron | 40.0% |
| ! | GAGTTTGAGACATGAGACTT+TGG | - | chr1.2:30054537-30054556 | MS.gene062500:intron | 40.0% |
| ! | GATTTAGGACCTGTTTGGAT+TGG | - | chr1.2:30053463-30053482 | MS.gene062500:intron | 40.0% |
| ! | GCTAATAGGTTGGATTTGGT+TGG | - | chr1.2:30053317-30053336 | MS.gene062500:intron | 40.0% |
| ! | TAACAGGTTACTTTCAACCC+AGG | + | chr1.2:30057018-30057037 | None:intergenic | 40.0% |
| ! | TCAAGGAAGCATATTGTGGA+AGG | - | chr1.2:30053107-30053126 | MS.gene062500:intron | 40.0% |
| ! | TGGCATAATCTGAGGTGAAT+CGG | + | chr1.2:30057237-30057256 | None:intergenic | 40.0% |
| ! | TGGGCATCATAGTTTCAAGT+TGG | + | chr1.2:30053757-30053776 | None:intergenic | 40.0% |
| ! | TGGGTTGAAAGTAACCTGTT+AGG | - | chr1.2:30057017-30057036 | MS.gene062500:intron | 40.0% |
| ! | TTTTAGTCGTACATGACTCG+AGG | + | chr1.2:30054469-30054488 | None:intergenic | 40.0% |
| !! | GATTAGTCTCTATGGTTGAG+TGG | + | chr1.2:30054446-30054465 | None:intergenic | 40.0% |
| !! | GGTTGATGATGTGCTCAAAA+AGG | - | chr1.2:30056095-30056114 | MS.gene062500:intron | 40.0% |
| !! | TTTGGATTGGCTTGTTTCTG+AGG | - | chr1.2:30053476-30053495 | MS.gene062500:intron | 40.0% |
| !!! | CAAAGCCACTTTTTCCCTTA+TGG | - | chr1.2:30053663-30053682 | MS.gene062500:intron | 40.0% |
| AACCCCTGATCACTTGCTTA+AGG | - | chr1.2:30054986-30055005 | MS.gene062500:CDS | 45.0% | |
| AAGCTTGGGCTGTTGCTAAT+AGG | - | chr1.2:30053303-30053322 | MS.gene062500:intron | 45.0% | |
| AATTGGGTATCCTCCACATG+AGG | - | chr1.2:30054228-30054247 | MS.gene062500:intron | 45.0% | |
| ACACACAAATAAGGGGGCAA+TGG | + | chr1.2:30057365-30057384 | None:intergenic | 45.0% | |
| ACCCCTGATCACTTGCTTAA+GGG | - | chr1.2:30054987-30055006 | MS.gene062500:CDS | 45.0% | |
| ACCCCTTAAGCAAGTGATCA+GGG | + | chr1.2:30054992-30055011 | None:intergenic | 45.0% | |
| ACTACTAACTCCTGCTGTGA+TGG | - | chr1.2:30057588-30057607 | MS.gene062500:CDS | 45.0% | |
| ACTGAACCAAGTGACCTAAC+AGG | + | chr1.2:30057034-30057053 | None:intergenic | 45.0% | |
| AGGACAAGGACCGAATGATA+AGG | - | chr1.2:30053079-30053098 | MS.gene062500:intron | 45.0% | |
| AGGACTTGAACCGTGAACTT+CGG | + | chr1.2:30054293-30054312 | None:intergenic | 45.0% | |
| ATCAAAACACTAAACGGCGG+TGG | + | chr1.2:30054882-30054901 | None:intergenic | 45.0% | |
| ATCTCTATCGGAGAACCTGT+TGG | - | chr1.2:30054904-30054923 | MS.gene062500:intron | 45.0% | |
| ATTGGGTATCCTCCACATGA+GGG | - | chr1.2:30054229-30054248 | MS.gene062500:intron | 45.0% | |
| CTACAACACACGACGAAAAG+TGG | + | chr1.2:30056055-30056074 | None:intergenic | 45.0% | |
| CTTGACAGCCCCTTATCATT+CGG | + | chr1.2:30053092-30053111 | None:intergenic | 45.0% | |
| GAAGCCAATAGCAGATGAAC+TGG | - | chr1.2:30056128-30056147 | MS.gene062500:intron | 45.0% | |
| GAATCTTGCATCTCGATCAC+TGG | - | chr1.2:30056074-30056093 | MS.gene062500:intron | 45.0% | |
| GACAAGGACCGAATGATAAG+GGG | - | chr1.2:30053081-30053100 | MS.gene062500:intron | 45.0% | |
| GCTCTTACAGTCTCCTCAAT+CGG | + | chr1.2:30053209-30053228 | None:intergenic | 45.0% | |
| GGACAAGGACCGAATGATAA+GGG | - | chr1.2:30053080-30053099 | MS.gene062500:intron | 45.0% | |
| GGATACCCAATAAAGGGCAA+AGG | + | chr1.2:30054415-30054434 | None:intergenic | 45.0% | |
| GGATGGCAGAAGGAATTACT+AGG | + | chr1.2:30056934-30056953 | None:intergenic | 45.0% | |
| GGTTGGCAGTGTTAATAGGA+AGG | + | chr1.2:30053736-30053755 | None:intergenic | 45.0% | |
| GTCAGCAGATTACTGAAGCT+TGG | - | chr1.2:30053288-30053307 | MS.gene062500:intron | 45.0% | |
| GTTGCCCTTTGCCCTTTATT+GGG | - | chr1.2:30054407-30054426 | MS.gene062500:intron | 45.0% | |
| TAACCTCTTGAACAGGCACA+AGG | - | chr1.2:30053364-30053383 | MS.gene062500:intron | 45.0% | |
| TACAACAACTTAGGCCGTTC+GGG | - | chr1.2:30052828-30052847 | MS.gene062500:CDS | 45.0% | |
| TACGGAGCATGGGTAAGTTT+CGG | - | chr1.2:30052873-30052892 | MS.gene062500:CDS | 45.0% | |
| TACTCAGGCTGTTCAACAAC+CGG | + | chr1.2:30053344-30053363 | None:intergenic | 45.0% | |
| TAGCACAGCTTTCAATTGCG+TGG | - | chr1.2:30056160-30056179 | MS.gene062500:intron | 45.0% | |
| TCAATCGGCGTACAAACATC+CGG | + | chr1.2:30053194-30053213 | None:intergenic | 45.0% | |
| TCAATCTTCTCCATCACAGC+AGG | + | chr1.2:30057601-30057620 | None:intergenic | 45.0% | |
| TCTCTATCGGAGAACCTGTT+GGG | - | chr1.2:30054905-30054924 | MS.gene062500:intron | 45.0% | |
| TGTCATGTGACCGAAGTTCA+CGG | - | chr1.2:30054280-30054299 | MS.gene062500:CDS | 45.0% | |
| TTACCTTGTGCCTGTTCAAG+AGG | + | chr1.2:30053370-30053389 | None:intergenic | 45.0% | |
| TTGGGCTGTTGCTAATAGGT+TGG | - | chr1.2:30053307-30053326 | MS.gene062500:intron | 45.0% | |
| ! | AGCTAGAAGAGTGTAGTGGT+TGG | - | chr1.2:30054637-30054656 | MS.gene062500:intron | 45.0% |
| ! | ATGGAATTGGTCTCACCACT+TGG | - | chr1.2:30055408-30055427 | MS.gene062500:intron | 45.0% |
| ! | CAGTAACCAATTGGCTCAAC+TGG | + | chr1.2:30055256-30055275 | None:intergenic | 45.0% |
| ! | GCTGTCAAGGAAGCATATTG+TGG | - | chr1.2:30053103-30053122 | MS.gene062500:intron | 45.0% |
| ! | GGCATAATCTGAGGTGAATC+GGG | + | chr1.2:30057236-30057255 | None:intergenic | 45.0% |
| ! | TAATTTGGAGTTCGGATGGG+AGG | - | chr1.2:30055168-30055187 | MS.gene062500:intron | 45.0% |
| ! | TAGGTTGGATTTGGTTGGAC+CGG | - | chr1.2:30053322-30053341 | MS.gene062500:intron | 45.0% |
| ! | TGCTGTGATGGAGAAGATTG+AGG | - | chr1.2:30057600-30057619 | MS.gene062500:CDS | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr1.2:30054313-30054332 | None:intergenic | 45.0% |
| ! | TTTATTGGGGGACTAGTGAG+TGG | - | chr1.2:30053261-30053280 | MS.gene062500:intron | 45.0% |
| !! | ACTCGAGGGATTAGTCTCTA+TGG | + | chr1.2:30054454-30054473 | None:intergenic | 45.0% |
| AAAGCAAAACGGCTGTCTGG+GGG | + | chr1.2:30055485-30055504 | None:intergenic | 50.0% | |
| AACGCAGAAGTCTACGCCAA+CGG | - | chr1.2:30052969-30052988 | MS.gene062500:intron | 50.0% | |
| AAGAACACACCATGCCCAAC+AGG | + | chr1.2:30054922-30054941 | None:intergenic | 50.0% | |
| ACCCAGGAACTCAAGAACCA+CGG | + | chr1.2:30057002-30057021 | None:intergenic | 50.0% | |
| ACGCCCAGTTCATCTGCTAT+TGG | + | chr1.2:30056135-30056154 | None:intergenic | 50.0% | |
| ATAAAGGGCAAAGGGCAACC+TGG | + | chr1.2:30054406-30054425 | None:intergenic | 50.0% | |
| CAAAGCAAAACGGCTGTCTG+GGG | + | chr1.2:30055486-30055505 | None:intergenic | 50.0% | |
| CAACTTTACCACTTGCGCCA+AGG | + | chr1.2:30054259-30054278 | None:intergenic | 50.0% | |
| CCAAAGCAAAACGGCTGTCT+GGG | + | chr1.2:30055487-30055506 | None:intergenic | 50.0% | |
| CCAACTTTCCTACGGAGCAT+GGG | - | chr1.2:30052863-30052882 | MS.gene062500:CDS | 50.0% | |
| CCACTTTGCACCACCAACAA+TGG | + | chr1.2:30055041-30055060 | None:intergenic | 50.0% | |
| CCCCTGATCACTTGCTTAAG+GGG | - | chr1.2:30054988-30055007 | MS.gene062500:CDS | 50.0% | |
| CCCCTTAAGCAAGTGATCAG+GGG | + | chr1.2:30054991-30055010 | None:intergenic | 50.0% | |
| CGAATGATAAGGGGCTGTCA+AGG | - | chr1.2:30053090-30053109 | MS.gene062500:intron | 50.0% | |
| CTCTATGGTTGAGTGGCATG+TGG | + | chr1.2:30054439-30054458 | None:intergenic | 50.0% | |
| CTGTATGAATCAGCGCGCTT+TGG | + | chr1.2:30057643-30057662 | None:intergenic | 50.0% | |
| GAAACTTACCCATGCTCCGT+AGG | + | chr1.2:30052874-30052893 | None:intergenic | 50.0% | |
| GAAGTTCACGGTTCAAGTCC+TGG | - | chr1.2:30054292-30054311 | MS.gene062500:CDS | 50.0% | |
| GACCCCTTAAGCAAGTGATC+AGG | + | chr1.2:30054993-30055012 | None:intergenic | 50.0% | |
| GGTAAGTTTCGGCAACCAAC+TGG | - | chr1.2:30052884-30052903 | MS.gene062500:CDS | 50.0% | |
| GGTCCAAATCCCTTACCACT+TGG | - | chr1.2:30055009-30055028 | MS.gene062500:CDS | 50.0% | |
| GGTTGCCCTTTGCCCTTTAT+TGG | - | chr1.2:30054406-30054425 | MS.gene062500:intron | 50.0% | |
| TATGGTTGAGTGGCATGTGG+AGG | + | chr1.2:30054436-30054455 | None:intergenic | 50.0% | |
| TCAAGAACCACGGAGGAATG+TGG | + | chr1.2:30056992-30057011 | None:intergenic | 50.0% | |
| TCCAAAGCAAAACGGCTGTC+TGG | + | chr1.2:30055488-30055507 | None:intergenic | 50.0% | |
| TCCGTGGTTCTTGAGTTCCT+GGG | - | chr1.2:30056998-30057017 | MS.gene062500:intron | 50.0% | |
| TGGCGCTACAAAAGAGTCTC+AGG | - | chr1.2:30056218-30056237 | MS.gene062500:intron | 50.0% | |
| TGTCGAAGAAGTTTACGCCG+TGG | + | chr1.2:30052950-30052969 | None:intergenic | 50.0% | |
| TTCTCTACCACATTCCTCCG+TGG | - | chr1.2:30056982-30057001 | MS.gene062500:intron | 50.0% | |
| TTGGGTATCCTCCACATGAG+GGG | - | chr1.2:30054230-30054249 | MS.gene062500:intron | 50.0% | |
| ! | AAGATCTTCTGGGGAGGACA+AGG | - | chr1.2:30053065-30053084 | MS.gene062500:intron | 50.0% |
| ! | GGATGTTTGTACGCCGATTG+AGG | - | chr1.2:30053193-30053212 | MS.gene062500:intron | 50.0% |
| ! | TCGACAAAGATCTTCTGGGG+AGG | - | chr1.2:30053059-30053078 | MS.gene062500:intron | 50.0% |
| !! | AAAGCGTCGTTGAAGAGGCT+GGG | - | chr1.2:30053134-30053153 | MS.gene062500:intron | 50.0% |
| !! | CCATTGTTGGTGGTGCAAAG+TGG | - | chr1.2:30055038-30055057 | MS.gene062500:CDS | 50.0% |
| !! | GGCTGACTTTTAGACCCGAA+CGG | + | chr1.2:30052845-30052864 | None:intergenic | 50.0% |
| AAGGGGGCAAAACTCTCCCA+GGG | + | chr1.2:30057200-30057219 | None:intergenic | 55.0% | |
| ACGCAGGGTCCCACCATTAT+TGG | + | chr1.2:30054364-30054383 | None:intergenic | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | + | chr1.2:30054380-30054399 | None:intergenic | 55.0% | |
| ACTTGGAGTCCACTTGCGTC+TGG | - | chr1.2:30055425-30055444 | MS.gene062500:intron | 55.0% | |
| AGAAGTTTACGCCGTGGTCG+CGG | + | chr1.2:30052944-30052963 | None:intergenic | 55.0% | |
| ATCGGAGAACCTGTTGGGCA+TGG | - | chr1.2:30054910-30054929 | MS.gene062500:intron | 55.0% | |
| CAAGGTTACCCCTCATGTGG+AGG | + | chr1.2:30054241-30054260 | None:intergenic | 55.0% | |
| CAGGAACTCAAGAACCACGG+AGG | + | chr1.2:30056999-30057018 | None:intergenic | 55.0% | |
| CCCATGCTCCGTAGGAAAGT+TGG | + | chr1.2:30052866-30052885 | None:intergenic | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | + | chr1.2:30054379-30054398 | None:intergenic | 55.0% | |
| CTCCACATGAGGGGTAACCT+TGG | - | chr1.2:30054239-30054258 | MS.gene062500:intron | 55.0% | |
| CTCCGTGGTTCTTGAGTTCC+TGG | - | chr1.2:30056997-30057016 | MS.gene062500:intron | 55.0% | |
| GCCAACTTTCCTACGGAGCA+TGG | - | chr1.2:30052862-30052881 | MS.gene062500:CDS | 55.0% | |
| GTAAGGACTCCAGACGCAAG+TGG | + | chr1.2:30055437-30055456 | None:intergenic | 55.0% | |
| TAAGGGGGCAAAACTCTCCC+AGG | + | chr1.2:30057201-30057220 | None:intergenic | 55.0% | |
| ! | AAGCGTCGTTGAAGAGGCTG+GGG | - | chr1.2:30053135-30053154 | MS.gene062500:intron | 55.0% |
| ! | AGACGCAAGTGGACTCCAAG+TGG | + | chr1.2:30055426-30055445 | None:intergenic | 55.0% |
| ! | CTTGCGTCTGGAGTCCTTAC+TGG | - | chr1.2:30055437-30055456 | MS.gene062500:intron | 55.0% |
| ! | TGTCGGAGCGTTTCCAGTCA+AGG | + | chr1.2:30053031-30053050 | None:intergenic | 55.0% |
| !! | CCCAGACAGCCGTTTTGCTT+TGG | - | chr1.2:30055484-30055503 | MS.gene062500:intron | 55.0% |
| !! | GAAAGCGTCGTTGAAGAGGC+TGG | - | chr1.2:30053133-30053152 | MS.gene062500:intron | 55.0% |
| !! | GGACGAAAGCGTCGTTGAAG+AGG | - | chr1.2:30053129-30053148 | MS.gene062500:intron | 55.0% |
| AGGGGTAACCTTGGCGCAAG+TGG | - | chr1.2:30054248-30054267 | MS.gene062500:intron | 60.0% | |
| CGCCAAGGTTACCCCTCATG+TGG | + | chr1.2:30054244-30054263 | None:intergenic | 60.0% | |
| GAGGCTGGGGATGGAGTATG+TGG | - | chr1.2:30053148-30053167 | MS.gene062500:intron | 60.0% | |
| GGTCGCGCAGAGGAGATCAT+GGG | - | chr1.2:30052990-30053009 | MS.gene062500:intron | 60.0% | |
| GTCGTTGAAGAGGCTGGGGA+TGG | - | chr1.2:30053139-30053158 | MS.gene062500:intron | 60.0% | |
| ! | ATGGTGGGACCCTGCGTATG+CGG | - | chr1.2:30054367-30054386 | MS.gene062500:CDS | 60.0% |
| ! | GTCGCGGCAGCATTGGAGAA+GGG | + | chr1.2:30052928-30052947 | None:intergenic | 60.0% |
| ! | TGCGGGAGCTTTAGTGCACC+AGG | - | chr1.2:30054385-30054404 | MS.gene062500:CDS | 60.0% |
| !! | GTCTAGCTCTGCTCTGCCAC+TGG | - | chr1.2:30053886-30053905 | MS.gene062500:intron | 60.0% |
| CGGTCGCGCAGAGGAGATCA+TGG | - | chr1.2:30052989-30053008 | MS.gene062500:intron | 65.0% | |
| CTCCAATGCTGCCGCGACCA+CGG | - | chr1.2:30052930-30052949 | MS.gene062500:intron | 65.0% | |
| GATCTCCTCTGCGCGACCGT+TGG | + | chr1.2:30052988-30053007 | None:intergenic | 65.0% | |
| TGGTGGGACCCTGCGTATGC+GGG | - | chr1.2:30054368-30054387 | MS.gene062500:CDS | 65.0% | |
| ! | GGTCGCGGCAGCATTGGAGA+AGG | + | chr1.2:30052929-30052948 | None:intergenic | 65.0% |
| CTACGCCAACGGTCGCGCAG+AGG | - | chr1.2:30052980-30052999 | MS.gene062500:intron | 70.0% | |
| CGCCGTGGTCGCGGCAGCAT+TGG | + | chr1.2:30052935-30052954 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 30052822 | 30057666 | 30052822 | ID=MS.gene062500 |
| chr1.2 | mRNA | 30052822 | 30057666 | 30052822 | ID=MS.gene062500.t1;Parent=MS.gene062500 |
| chr1.2 | exon | 30057103 | 30057666 | 30057103 | ID=MS.gene062500.t1.exon1;Parent=MS.gene062500.t1 |
| chr1.2 | CDS | 30057103 | 30057666 | 30057103 | ID=cds.MS.gene062500.t1;Parent=MS.gene062500.t1 |
| chr1.2 | exon | 30054971 | 30055114 | 30054971 | ID=MS.gene062500.t1.exon2;Parent=MS.gene062500.t1 |
| chr1.2 | CDS | 30054971 | 30055114 | 30054971 | ID=cds.MS.gene062500.t1;Parent=MS.gene062500.t1 |
| chr1.2 | exon | 30054249 | 30054413 | 30054249 | ID=MS.gene062500.t1.exon3;Parent=MS.gene062500.t1 |
| chr1.2 | CDS | 30054249 | 30054413 | 30054249 | ID=cds.MS.gene062500.t1;Parent=MS.gene062500.t1 |
| chr1.2 | exon | 30052822 | 30052935 | 30052822 | ID=MS.gene062500.t1.exon4;Parent=MS.gene062500.t1 |
| chr1.2 | CDS | 30052822 | 30052935 | 30052822 | ID=cds.MS.gene062500.t1;Parent=MS.gene062500.t1 |
| Gene Sequence |
| Protein sequence |
