AlfalfaGEDB | MS.gene028610

M. sativa cultivar XinJiangDaYe / MS.gene028610

KEGG: K14652
GO: GO:0003674 GO:0003824 GO:0003933 GO:0003935 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0008686 GO:0009058 GO:0009110 GO:0009231 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0016829 GO:0016830 GO:0017144 GO:0018130 GO:0019238 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00925.23 PF00926.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028610.t1	XP_003597321.2	96.1	508	19	1	1	508	1	507	1.10E-269	938.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028610.t1	Q9FN89	67.3	513	150	6	1	507	2	502	9.1e-188	657.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028610.t1	G7IHK9	96.1	508	19	1	1	508	1	507	8.0e-270	938.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene01192	MS.gene028610	PPI
MS.gene028458	MS.gene028610	PPI
MS.gene028610	MS.gene02178	PPI
MS.gene028610	MS.gene053559	PPI
MS.gene068045	MS.gene028610	PPI
MS.gene071898	MS.gene028610	PPI
MS.gene90199	MS.gene028610	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene028610.t1	MTR_2g096330	96.654	508	16	1	1	508	1	507	1009
MS.gene028610.t1	MTR_2g009270	65.877	422	142	2	88	508	102	522	577
MS.gene028610.t1	MTR_4g094130	66.832	404	133	1	102	505	110	512	573
MS.gene028610.t1	MTR_4g094130	68.052	385	122	1	121	505	1	384	554

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028610.t1	AT5G59750	69.396	513	139	6	1	507	2	502	0.0	712
MS.gene028610.t1	AT5G59750	65.082	547	139	7	1	507	2	536	0.0	695
MS.gene028610.t1	AT5G59750	66.812	458	134	6	1	452	2	447	0.0	603
MS.gene028610.t1	AT5G64300	67.067	416	136	1	90	505	112	526	0.0	588
MS.gene028610.t1	AT2G22450	58.418	392	154	3	92	483	92	474	1.46e-159	462

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Find 118 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAGTTATTGAGACAAT+TGG	0.419486	2.3:+6213434	None:intergenic
AACAATCCAGCAAAATTTGT+TGG	0.402087	2.3:-6212048	MS.gene028610:CDS
AAGTCCTCGGATTTCGACTC+TGG	0.423258	2.3:+6213659	None:intergenic
AATCATAAATGCCACATCCT+TGG	0.486532	2.3:+6213978	None:intergenic
AATGGAAGAGTACTCCTTAG+AGG	0.439818	2.3:+6214350	None:intergenic
AATTCTAGCTAACCTTTCCT+TGG	0.419158	2.3:+6214304	None:intergenic
ACATTCAGAATGTTTAACTG+GGG	0.696460	2.3:-6212906	MS.gene028610:CDS
ACATTGGAGTTCGAACTATG+AGG	0.535750	2.3:-6212080	MS.gene028610:CDS
ACCAAGATGGGTCATATATA+TGG	0.276727	2.3:-6211934	MS.gene028610:CDS
ACCACTGTGATAGTGAAAGT+AGG	0.590650	2.3:+6213850	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAATCCAGCAAAATTTGT+TGG	-	chr2.3:6214621-6214640	MS.gene028610:intron	30.0%
ACATTCAGAATGTTTAACTG+GGG	-	chr2.3:6213763-6213782	MS.gene028610:intron	30.0%
ACCTTGATCTTGCAAATTAT+AGG	+	chr2.3:6213930-6213949	None:intergenic	30.0%
ACTAAAGTAGATGGTATGAT+TGG	-	chr2.3:6214083-6214102	MS.gene028610:intron	30.0%
ACTCATCATAGTGTAAGATT+TGG	-	chr2.3:6212090-6212109	MS.gene028610:CDS	30.0%
AGTGATTAAAAGATCTAACC+TGG	+	chr2.3:6214021-6214040	None:intergenic	30.0%
ATGAAATTGATTGAAGAAGC+TGG	-	chr2.3:6213836-6213855	MS.gene028610:intron	30.0%
GATGAAAACAACAATGTTGA+AGG	-	chr2.3:6212636-6212655	MS.gene028610:intron	30.0%
GTACATTCAGAATGTTTAAC+TGG	-	chr2.3:6213761-6213780	MS.gene028610:intron	30.0%
GTGATTAAAAGATCTAACCT+GGG	+	chr2.3:6214020-6214039	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	6211921	6214770	6211921	ID=MS.gene028610
chr2.3	mRNA	6211921	6214770	6211921	ID=MS.gene028610.t1;Parent=MS.gene028610
chr2.3	exon	6214715	6214770	6214715	ID=MS.gene028610.t1.exon1;Parent=MS.gene028610.t1
chr2.3	CDS	6214715	6214770	6214715	ID=cds.MS.gene028610.t1;Parent=MS.gene028610.t1
chr2.3	exon	6214317	6214620	6214317	ID=MS.gene028610.t1.exon2;Parent=MS.gene028610.t1
chr2.3	CDS	6214317	6214620	6214317	ID=cds.MS.gene028610.t1;Parent=MS.gene028610.t1
chr2.3	exon	6213852	6214073	6213852	ID=MS.gene028610.t1.exon3;Parent=MS.gene028610.t1
chr2.3	CDS	6213852	6214073	6213852	ID=cds.MS.gene028610.t1;Parent=MS.gene028610.t1
chr2.3	exon	6213428	6213753	6213428	ID=MS.gene028610.t1.exon4;Parent=MS.gene028610.t1
chr2.3	CDS	6213428	6213753	6213428	ID=cds.MS.gene028610.t1;Parent=MS.gene028610.t1
chr2.3	exon	6213092	6213221	6213092	ID=MS.gene028610.t1.exon5;Parent=MS.gene028610.t1
chr2.3	CDS	6213092	6213221	6213092	ID=cds.MS.gene028610.t1;Parent=MS.gene028610.t1
chr2.3	exon	6212670	6212966	6212670	ID=MS.gene028610.t1.exon6;Parent=MS.gene028610.t1
chr2.3	CDS	6212670	6212966	6212670	ID=cds.MS.gene028610.t1;Parent=MS.gene028610.t1
chr2.3	exon	6211921	6212112	6211921	ID=MS.gene028610.t1.exon7;Parent=MS.gene028610.t1
chr2.3	CDS	6211921	6212112	6211921	ID=cds.MS.gene028610.t1;Parent=MS.gene028610.t1

Gene Sequence

>MS.gene028610

ATGGACTCTGCTTCATTCCCTAGTCCTTTGATTTCCCACGTCATCACCAATTCAAGGTACATATTTTATTTCTCTAGATAACACAACACTATATTAATTGTTCCTCTATTTGTTGAACTCGTGTTAAATTTTTCTATTATTTATTCAAAGCTTGCATCGGTCATGCACTACTCATCATAGTGTAAGATTTGGCCTGTGGAACAACAAGGTGAGAAATTTGGCTTTTTATGCTATTGGGTTTTCTAAGGTTGGAACTGAAGACGTGTTTGATGATAGTGGTGATTTGAAGAAAAATGAAAATGGATCCCTCTTAAAAACGTTAGACGCTACAAATGAAATAACTGATCAAGAAAATAGCGATTTCTTTGTAAGTGAAGCTGAAGGTGATCCAGATTGTCCCTCTAAGGAGTACTCTTCCATTGAGCATGCCCTTAATGCATTACGCCAAGGAAAGGTTAGCTAGAATTTTATGTGCGTTCGTTACGTCTAATACATGTTTGGAATCATAGTAGCACAATGACTTCGTTAAAGTACAAAATTGAAACTTTGATCAAAATCAAATTGACTGACATTTATGATAAATATGTTATTGAACATGTTCGTGTTAAGTGAATAATTTTGAATTTTGATGACATTTTATTAAGTAATGGATTGATCTTGTTCATATCTAACACCTATATCAATATTTTTTTTGAAGTTTGTAATCGTTGTAGATGATGAAAACAACAATGTTGAAGGGAATCTTATAAAGGCAGCATCTCTTGTTAGTACCAAGGATGTGGCATTTATGATTAAACATGGATCAGGAATAGTTTCTGTTGGCATGAAAGAAGAGGATCTTCAAAGATTAAACCTTCCTCTTATGTCACCTGAGACTGAAGAAGAGGATTCATCTGCCCCTACTTTCACTATCACAGTGGTAAGTAAAATATCATATAGTATATTGAAGCCTAATGCAGATTGTTGCATATAGTTAGAAGCTCATTTAATTGATATTGTGTAATATATTATTGTTAGGATGCAAAATATGGAACTTCCACGGGCGTATCGGCTGCGGATAGAGCAAAAACAATTCTTGCTTTATCATCTCCAGAGTCGAAATCCGAGGACTTAAGAAAACCAGGTCATGTTTTTCCTCTCAAGTATAGAAATGGTGGAGTGCTTAGGAGAGCTGGTCATACTGAGGCTTCTGTAGATTTGGTTGCATTGGCAGGCTTGCCACCATTTTCTGTTCTCACAGCTCTTGTTGATGTTGAAGATGGAAATATGGCATCTTTGCCCAGTTTAAAAAACTTAGCATTGGAATATAACTTACCAATTGTCTCAATAACTGATTTGATAAGGTAAACAATCTTACTTTCATAATTTTTGCTTATGCAAAGTTTATGATCATTCATTCTTCAATTGTAGAAACAACTTGTGTATGATAAACTTTAATTGAACAAGCACTTAATTAAATTGTTGATCTAAACATATGTTCTCTTAATGTGGTTTATAAGCTAATCCAATCAAATTCGCTTAACAATATTAATGTATGTGACGCTTCAAGGTATCGGAGAAAACGAGAGAAATTGGTTGAAAGAACTTATGTGTCACATCTTCCTACTAAATGGGGTCTATTTCAAGCATATTGTTATAGTTCAAAGTTGGATGGAACTGAGCATGTGGCTGTTGTAAAGGTAAATATGACTTTGTTAATTAGATTTTCAAGATAAAACTTGTTACTTAGCAATTTATATATGAAAACCTAAGCAAACTAAAGAATAGTATTTTTCTGAATTATAATTTCTTATTGGTTGCTTAGGGAAACATAGGAGATGGGCAAGATGTTCTAGTAAGAGTACATTCAGAATGTTTAACTGGGGATATATTTGGATCAGCTCGGTGTGACTGTGGCCAGCAACTAGATTTGGCTATGAAATTGATTGAAGAAGCTGGAAGAGGAGTAATTGTGTATCTTAGAGGTCATGAAGGAAGAGGCATTGGGTTAGGTCACAAACTTCAAGCCTATAATTTGCAAGATCAAGGTCGTGATACAGTCCAAGCAAACATAGATTTGGGGTTAGCTGTTGATGCTCGTGAGTATGGCATTGGTGCCCAGGTTAGATCTTTTAATCACTTTCACTTACATTGTTTGTGTGCTTCAAATCAAATAATGATCAACTAAAGTAGATGGTATGATTGGACTTTCAGATTAGTTAATTTTTTGTCTGAATACCGAATTTTAAAAAAACAAAAACTAAGTTTTACTTGAATTTTTGTTCACGTATCTTGCTTTGATTGTATAATAAGTTTATTTCTGATACATTGAGTAAAAAAAAGTTTAATTTTGATACATATTTTACATAATTTTTACATATTTTATTATGAAAAGCATAGCTGCGAAACTCGCCACCAATAAATGTTGATTAGTAGATAATTGCAGATTTAAATTCACGTCTATGCATATCAAATGTCGCTACAACTACCAATTGAACAATAATTATGCACTTTGGTGACATGTAAAACATTTTTGAATGTTGGTTGATAGTATAAAAAAATCTTCCTAGTATTAGTGAATACAAATCAAATCCTTGTATAATTTGCAATATTTCATAAAACTATTAAAAATGTGATTCCAAAACAAGCTATTATAAGTTGTATTTGATAAATGTGCAGATTTTGAGGGACATTGGAGTTCGAACTATGAGGTTGATGACAAACAATCCAGCAAAATTTGTTGGTCTTAAAGGATATGGTTTAGCTGTGACAGGTCGTGTTCCTGTGCTAACACCAATCACCGAAGCAAACAAGCGTTACCTAGAAACAAAAAGGACCAAGATGGGTCATATATATGGGTCTGATATATAA

Protein sequence

>MS.gene028610.t1

MDSASFPSPLISHVITNSSLHRSCTTHHSVRFGLWNNKVRNLAFYAIGFSKVGTEDVFDDSGDLKKNENGSLLKTLDATNEITDQENSDFFVSEAEGDPDCPSKEYSSIEHALNALRQGKFVIVVDDENNNVEGNLIKAASLVSTKDVAFMIKHGSGIVSVGMKEEDLQRLNLPLMSPETEEEDSSAPTFTITVDAKYGTSTGVSAADRAKTILALSSPESKSEDLRKPGHVFPLKYRNGGVLRRAGHTEASVDLVALAGLPPFSVLTALVDVEDGNMASLPSLKNLALEYNLPIVSITDLIRYRRKREKLVERTYVSHLPTKWGLFQAYCYSSKLDGTEHVAVVKGNIGDGQDVLVRVHSECLTGDIFGSARCDCGQQLDLAMKLIEEAGRGVIVYLRGHEGRGIGLGHKLQAYNLQDQGRDTVQANIDLGLAVDAREYGIGAQILRDIGVRTMRLMTNNPAKFVGLKGYGLAVTGRVPVLTPITEANKRYLETKRTKMGHIYGSDI