Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028610.t1 | XP_003597321.2 | 96.1 | 508 | 19 | 1 | 1 | 508 | 1 | 507 | 1.10E-269 | 938.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028610.t1 | Q9FN89 | 67.3 | 513 | 150 | 6 | 1 | 507 | 2 | 502 | 9.1e-188 | 657.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028610.t1 | G7IHK9 | 96.1 | 508 | 19 | 1 | 1 | 508 | 1 | 507 | 8.0e-270 | 938.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene068045 | MS.gene028610 | PPI |
| MS.gene90199 | MS.gene028610 | PPI |
| MS.gene028610 | MS.gene02178 | PPI |
| MS.gene071898 | MS.gene028610 | PPI |
| MS.gene01192 | MS.gene028610 | PPI |
| MS.gene028610 | MS.gene053559 | PPI |
| MS.gene028458 | MS.gene028610 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028610.t1 | MTR_2g096330 | 96.654 | 508 | 16 | 1 | 1 | 508 | 1 | 507 | 0.0 | 1009 |
| MS.gene028610.t1 | MTR_2g009270 | 65.877 | 422 | 142 | 2 | 88 | 508 | 102 | 522 | 0.0 | 577 |
| MS.gene028610.t1 | MTR_4g094130 | 66.832 | 404 | 133 | 1 | 102 | 505 | 110 | 512 | 0.0 | 573 |
| MS.gene028610.t1 | MTR_4g094130 | 68.052 | 385 | 122 | 1 | 121 | 505 | 1 | 384 | 0.0 | 554 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028610.t1 | AT5G59750 | 69.396 | 513 | 139 | 6 | 1 | 507 | 2 | 502 | 0.0 | 712 |
| MS.gene028610.t1 | AT5G59750 | 65.082 | 547 | 139 | 7 | 1 | 507 | 2 | 536 | 0.0 | 695 |
| MS.gene028610.t1 | AT5G59750 | 66.812 | 458 | 134 | 6 | 1 | 452 | 2 | 447 | 0.0 | 603 |
| MS.gene028610.t1 | AT5G64300 | 67.067 | 416 | 136 | 1 | 90 | 505 | 112 | 526 | 0.0 | 588 |
| MS.gene028610.t1 | AT2G22450 | 58.418 | 392 | 154 | 3 | 92 | 483 | 92 | 474 | 1.46e-159 | 462 |
Find 118 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAAATTTGTTGGTCTTAA+AGG | 0.107436 | 2.3:-6212039 | MS.gene028610:CDS |
| TGTTTAACTGGGGATATATT+TGG | 0.172347 | 2.3:-6212896 | MS.gene028610:CDS |
| TGTCACATCTTCCTACTAAA+TGG | 0.198867 | 2.3:-6213158 | MS.gene028610:CDS |
| TTCCTTGGCGTAATGCATTA+AGG | 0.202150 | 2.3:+6214319 | None:intergenic |
| TATTGTTAGGATGCAAAATA+TGG | 0.229542 | 2.3:-6213740 | MS.gene028610:intron |
| ACCTTGATCTTGCAAATTAT+AGG | 0.252533 | 2.3:+6212742 | None:intergenic |
| GAACAACAAGGTGAGAAATT+TGG | 0.257120 | 2.3:-6214550 | MS.gene028610:CDS |
| ACCAAGATGGGTCATATATA+TGG | 0.276727 | 2.3:-6211934 | MS.gene028610:CDS |
| TACTGAGGCTTCTGTAGATT+TGG | 0.288351 | 2.3:-6213570 | MS.gene028610:CDS |
| TTTGTTGGTCTTAAAGGATA+TGG | 0.289327 | 2.3:-6212033 | MS.gene028610:CDS |
| CGCTTGTTTGCTTCGGTGAT+TGG | 0.290801 | 2.3:+6211976 | None:intergenic |
| GTCCAAGCAAACATAGATTT+GGG | 0.316048 | 2.3:-6212710 | MS.gene028610:CDS |
| AGTCCAAGCAAACATAGATT+TGG | 0.316830 | 2.3:-6212711 | MS.gene028610:CDS |
| GTACATTCAGAATGTTTAAC+TGG | 0.320458 | 2.3:-6212908 | MS.gene028610:CDS |
| ATATATGGGTCTGATATATA+AGG | 0.354394 | 2.3:-6211919 | None:intergenic |
| ATAAAATATGTACCTTGAAT+TGG | 0.360216 | 2.3:+6214702 | None:intergenic |
| TCCTTGGCGTAATGCATTAA+GGG | 0.365334 | 2.3:+6214320 | None:intergenic |
| TGATGTTGAAGATGGAAATA+TGG | 0.367048 | 2.3:-6213501 | MS.gene028610:CDS |
| TCGGAGAAAACGAGAGAAAT+TGG | 0.372980 | 2.3:-6213196 | MS.gene028610:CDS |
| TACTCCTTAGAGGGACAATC+TGG | 0.387555 | 2.3:+6214360 | None:intergenic |
| TTCTGTAGATTTGGTTGCAT+TGG | 0.388739 | 2.3:-6213561 | MS.gene028610:CDS |
| GTAGATTTGGTTGCATTGGC+AGG | 0.388977 | 2.3:-6213557 | MS.gene028610:CDS |
| GTCACATCTTCCTACTAAAT+GGG | 0.389348 | 2.3:-6213157 | MS.gene028610:CDS |
| ACTCATCATAGTGTAAGATT+TGG | 0.392279 | 2.3:-6214579 | MS.gene028610:CDS |
| TCATAGCCAAATCTAGTTGC+TGG | 0.393601 | 2.3:+6212852 | None:intergenic |
| AGAGCTGTGAGAACAGAAAA+TGG | 0.400675 | 2.3:+6213527 | None:intergenic |
| AACAATCCAGCAAAATTTGT+TGG | 0.402087 | 2.3:-6212048 | MS.gene028610:CDS |
| TTTCCTCTCAAGTATAGAAA+TGG | 0.404838 | 2.3:-6213617 | MS.gene028610:CDS |
| AATTCTAGCTAACCTTTCCT+TGG | 0.419158 | 2.3:+6214304 | None:intergenic |
| AAATCAGTTATTGAGACAAT+TGG | 0.419486 | 2.3:+6213434 | None:intergenic |
| TCTCAATAACTGATTTGATA+AGG | 0.421147 | 2.3:-6213427 | MS.gene028610:intron |
| TAGGTAACGCTTGTTTGCTT+CGG | 0.423031 | 2.3:+6211969 | None:intergenic |
| AAGTCCTCGGATTTCGACTC+TGG | 0.423258 | 2.3:+6213659 | None:intergenic |
| TGATCCAGATTGTCCCTCTA+AGG | 0.424415 | 2.3:-6214364 | MS.gene028610:CDS |
| CTGTGGCCAGCAACTAGATT+TGG | 0.426292 | 2.3:-6212858 | MS.gene028610:CDS |
| TGAAATAGACCCCATTTAGT+AGG | 0.431751 | 2.3:+6213147 | None:intergenic |
| GAAGGAAGAGGCATTGGGTT+AGG | 0.438985 | 2.3:-6212779 | MS.gene028610:CDS |
| AATGGAAGAGTACTCCTTAG+AGG | 0.439818 | 2.3:+6214350 | None:intergenic |
| GAATCCTCTTCTTCAGTCTC+AGG | 0.446487 | 2.3:+6213880 | None:intergenic |
| TTCTCACCTTGTTGTTCCAC+AGG | 0.446496 | 2.3:+6214556 | None:intergenic |
| ACCCCAAATCTATGTTTGCT+TGG | 0.446947 | 2.3:+6212708 | None:intergenic |
| CCCATATATATGACCCATCT+TGG | 0.449345 | 2.3:+6211933 | None:intergenic |
| TGTTGAAGGGAATCTTATAA+AGG | 0.455110 | 2.3:-6214019 | MS.gene028610:CDS |
| TTTATGATTAAACATGGATC+AGG | 0.455192 | 2.3:-6213964 | MS.gene028610:CDS |
| AGCGTTACCTAGAAACAAAA+AGG | 0.456329 | 2.3:-6211957 | MS.gene028610:CDS |
| GCTGTTGATGCTCGTGAGTA+TGG | 0.457469 | 2.3:-6212683 | MS.gene028610:CDS |
| ATGAAATTGATTGAAGAAGC+TGG | 0.460792 | 2.3:-6212833 | MS.gene028610:CDS |
| TGCATTAAGGGCATGCTCAA+TGG | 0.463896 | 2.3:+6214332 | None:intergenic |
| GATGAAAACAACAATGTTGA+AGG | 0.466495 | 2.3:-6214033 | MS.gene028610:CDS |
| CCAAGATGGGTCATATATAT+GGG | 0.479755 | 2.3:-6211933 | MS.gene028610:CDS |
| GGTCATGAAGGAAGAGGCAT+TGG | 0.482864 | 2.3:-6212785 | MS.gene028610:CDS |
| TTGGTTGCTTAGGGAAACAT+AGG | 0.482975 | 2.3:-6212956 | MS.gene028610:intron |
| CCACTGTGATAGTGAAAGTA+GGG | 0.484212 | 2.3:+6213851 | None:intergenic |
| AATCATAAATGCCACATCCT+TGG | 0.486532 | 2.3:+6213978 | None:intergenic |
| GCCTATAATTTGCAAGATCA+AGG | 0.487252 | 2.3:-6212743 | MS.gene028610:CDS |
| TGGAACTTCCACGGGCGTAT+CGG | 0.490010 | 2.3:-6213720 | MS.gene028610:CDS |
| GGAGTAATTGTGTATCTTAG+AGG | 0.493061 | 2.3:-6212806 | MS.gene028610:CDS |
| ATAGAAATGGTGGAGTGCTT+AGG | 0.494926 | 2.3:-6213604 | MS.gene028610:CDS |
| CCCACGTCATCACCAATTCA+AGG | 0.497388 | 2.3:-6214714 | MS.gene028610:intron |
| TGAGTATGGCATTGGTGCCC+AGG | 0.497742 | 2.3:-6212669 | MS.gene028610:intron |
| ACGTGGGAAATCAAAGGACT+AGG | 0.503550 | 2.3:+6214730 | None:intergenic |
| GCTCTTGTTGATGTTGAAGA+TGG | 0.508607 | 2.3:-6213509 | MS.gene028610:CDS |
| TTGATTGAAGAAGCTGGAAG+AGG | 0.514495 | 2.3:-6212827 | MS.gene028610:CDS |
| TTCCACGGGCGTATCGGCTG+CGG | 0.519817 | 2.3:-6213714 | MS.gene028610:CDS |
| GGTGGAGTGCTTAGGAGAGC+TGG | 0.520674 | 2.3:-6213596 | MS.gene028610:CDS |
| TGTTATAGTTCAAAGTTGGA+TGG | 0.520999 | 2.3:-6213117 | MS.gene028610:CDS |
| GCTTAGGGAAACATAGGAGA+TGG | 0.523904 | 2.3:-6212950 | MS.gene028610:intron |
| GGATATGGTTTAGCTGTGAC+AGG | 0.524023 | 2.3:-6212018 | MS.gene028610:CDS |
| ATATTGTTATAGTTCAAAGT+TGG | 0.524855 | 2.3:-6213121 | MS.gene028610:CDS |
| TCAGTCTCAGGTGACATAAG+AGG | 0.529829 | 2.3:+6213892 | None:intergenic |
| GGGAATGAAGCAGAGTCCAT+AGG | 0.530818 | 2.3:+6214751 | None:intergenic |
| GCAAAATATGGAACTTCCAC+GGG | 0.532239 | 2.3:-6213728 | MS.gene028610:CDS |
| ACATTGGAGTTCGAACTATG+AGG | 0.535750 | 2.3:-6212080 | MS.gene028610:CDS |
| TATTTATTCAAAGCTTGCAT+CGG | 0.545583 | 2.3:-6214611 | MS.gene028610:intron |
| GGATCAGGAATAGTTTCTGT+TGG | 0.545719 | 2.3:-6213949 | MS.gene028610:CDS |
| TCGGTGATTGGTGTTAGCAC+AGG | 0.545794 | 2.3:+6211988 | None:intergenic |
| GTCACCTGAGACTGAAGAAG+AGG | 0.559881 | 2.3:-6213884 | MS.gene028610:CDS |
| CCACCATTTCTATACTTGAG+AGG | 0.560237 | 2.3:+6213614 | None:intergenic |
| TGAGCATGTGGCTGTTGTAA+AGG | 0.560783 | 2.3:-6213091 | MS.gene028610:intron |
| CTTAGAGGTCATGAAGGAAG+AGG | 0.564446 | 2.3:-6212791 | MS.gene028610:CDS |
| CGTGGGAAATCAAAGGACTA+GGG | 0.566760 | 2.3:+6214731 | None:intergenic |
| CCTCTCAAGTATAGAAATGG+TGG | 0.567977 | 2.3:-6213614 | MS.gene028610:CDS |
| TCTTGTTAGTACCAAGGATG+TGG | 0.568018 | 2.3:-6213989 | MS.gene028610:CDS |
| TAATGCATTACGCCAAGGAA+AGG | 0.571418 | 2.3:-6214316 | MS.gene028610:intron |
| TGCAAAATATGGAACTTCCA+CGG | 0.571857 | 2.3:-6213729 | MS.gene028610:CDS |
| TTCTGTTGGCATGAAAGAAG+AGG | 0.576477 | 2.3:-6213935 | MS.gene028610:CDS |
| ATGGAAGAGTACTCCTTAGA+GGG | 0.590392 | 2.3:+6214351 | None:intergenic |
| ACCACTGTGATAGTGAAAGT+AGG | 0.590650 | 2.3:+6213850 | None:intergenic |
| GTCATGAAGGAAGAGGCATT+GGG | 0.591268 | 2.3:-6212784 | MS.gene028610:CDS |
| TTCTTTGTAAGTGAAGCTGA+AGG | 0.595370 | 2.3:-6214387 | MS.gene028610:CDS |
| ATGAAAACAACAATGTTGAA+GGG | 0.595372 | 2.3:-6214032 | MS.gene028610:CDS |
| TACATTCAGAATGTTTAACT+GGG | 0.597083 | 2.3:-6212907 | MS.gene028610:CDS |
| CTTAGGGAAACATAGGAGAT+GGG | 0.597548 | 2.3:-6212949 | MS.gene028610:intron |
| GCCCTTAATGCATTACGCCA+AGG | 0.607779 | 2.3:-6214321 | MS.gene028610:CDS |
| GATGCTCGTGAGTATGGCAT+TGG | 0.608440 | 2.3:-6212677 | MS.gene028610:CDS |
| GTGTATCTTAGAGGTCATGA+AGG | 0.608731 | 2.3:-6212797 | MS.gene028610:CDS |
| GGGATATATTTGGATCAGCT+CGG | 0.611108 | 2.3:-6212886 | MS.gene028610:CDS |
| GTGGCATTTATGATTAAACA+TGG | 0.613664 | 2.3:-6213970 | MS.gene028610:CDS |
| TCCGAGGACTTAAGAAAACC+AGG | 0.619694 | 2.3:-6213647 | MS.gene028610:CDS |
| ATCCGCAGCCGATACGCCCG+TGG | 0.624899 | 2.3:+6213712 | None:intergenic |
| ATTTGGCCTGTGGAACAACA+AGG | 0.634139 | 2.3:-6214562 | MS.gene028610:CDS |
| ATAGTGTAAGATTTGGCCTG+TGG | 0.635119 | 2.3:-6214572 | MS.gene028610:CDS |
| TCACATCTTCCTACTAAATG+GGG | 0.639715 | 2.3:-6213156 | MS.gene028610:CDS |
| AGCATCTCTTGTTAGTACCA+AGG | 0.640073 | 2.3:-6213995 | MS.gene028610:CDS |
| GAAGACGTGTTTGATGATAG+TGG | 0.645204 | 2.3:-6214492 | MS.gene028610:CDS |
| GTGATGACGTGGGAAATCAA+AGG | 0.652787 | 2.3:+6214724 | None:intergenic |
| ACCTTGAATTGGTGATGACG+TGG | 0.653143 | 2.3:+6214713 | None:intergenic |
| GGATCAGCTCGGTGTGACTG+TGG | 0.657027 | 2.3:-6212875 | MS.gene028610:CDS |
| TCCAAGCAAACATAGATTTG+GGG | 0.659816 | 2.3:-6212709 | MS.gene028610:CDS |
| TCTCAGGTGACATAAGAGGA+AGG | 0.670240 | 2.3:+6213896 | None:intergenic |
| ATCTCCAGAGTCGAAATCCG+AGG | 0.671355 | 2.3:-6213663 | MS.gene028610:CDS |
| CACTGTGATAGTGAAAGTAG+GGG | 0.673445 | 2.3:+6213852 | None:intergenic |
| TAGGAGAGCTGGTCATACTG+AGG | 0.694929 | 2.3:-6213585 | MS.gene028610:CDS |
| ACATTCAGAATGTTTAACTG+GGG | 0.696460 | 2.3:-6212906 | MS.gene028610:CDS |
| GTTGGATGGAACTGAGCATG+TGG | 0.707210 | 2.3:-6213103 | MS.gene028610:CDS |
| CCTTGAATTGGTGATGACGT+GGG | 0.735027 | 2.3:+6214714 | None:intergenic |
| GCTGTGAGAACAGAAAATGG+TGG | 0.741200 | 2.3:+6213530 | None:intergenic |
| CCCTACTTTCACTATCACAG+TGG | 0.748231 | 2.3:-6213851 | MS.gene028610:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAAAAAAAATATTGATAT+AGG | + | chr2.3:6212597-6212616 | None:intergenic | 10.0% |
| !!! | GTTTTTGTTTTTTTAAAATT+CGG | + | chr2.3:6214141-6214160 | None:intergenic | 10.0% |
| !! | TCTGAATTATAATTTCTTAT+TGG | - | chr2.3:6213694-6213713 | MS.gene028610:CDS | 15.0% |
| !! | TTGTGTAATATATTATTGTT+AGG | - | chr2.3:6212916-6212935 | MS.gene028610:CDS | 15.0% |
| !! | ATAAAATATGTACCTTGAAT+TGG | + | chr2.3:6211970-6211989 | None:intergenic | 20.0% |
| !! | ATATTGTTATAGTTCAAAGT+TGG | - | chr2.3:6213548-6213567 | MS.gene028610:CDS | 20.0% |
| !! | ATCTACTAATCAACATTTAT+TGG | + | chr2.3:6214318-6214337 | None:intergenic | 20.0% |
| !! | GAAATATTGCAAATTATACA+AGG | + | chr2.3:6214495-6214514 | None:intergenic | 20.0% |
| !! | GATTTGAAGAAAAATGAAAA+TGG | - | chr2.3:6212201-6212220 | MS.gene028610:intron | 20.0% |
| !!! | AATGCTAAGTTTTTTAAACT+GGG | + | chr2.3:6213202-6213221 | None:intergenic | 20.0% |
| !!! | GATGACATTTTATTAAGTAA+TGG | - | chr2.3:6212548-6212567 | MS.gene028610:intron | 20.0% |
| !!! | TGTAAAACATTTTTGAATGT+TGG | - | chr2.3:6214421-6214440 | MS.gene028610:CDS | 20.0% |
| ! | AAACATATGTTCTCTTAATG+TGG | - | chr2.3:6213389-6213408 | MS.gene028610:intron | 25.0% |
| ! | AAATCAGTTATTGAGACAAT+TGG | + | chr2.3:6213238-6213257 | None:intergenic | 25.0% |
| ! | ATGAAAACAACAATGTTGAA+GGG | - | chr2.3:6212637-6212656 | MS.gene028610:intron | 25.0% |
| ! | CAGTTTAAAAAACTTAGCAT+TGG | - | chr2.3:6213201-6213220 | MS.gene028610:CDS | 25.0% |
| ! | GATTTGTATTCACTAATACT+AGG | + | chr2.3:6214468-6214487 | None:intergenic | 25.0% |
| ! | GTGCATAATTATTGTTCAAT+TGG | + | chr2.3:6214391-6214410 | None:intergenic | 25.0% |
| ! | TAATGATCAACTAAAGTAGA+TGG | - | chr2.3:6214074-6214093 | MS.gene028610:intron | 25.0% |
| ! | TACATTCAGAATGTTTAACT+GGG | - | chr2.3:6213762-6213781 | MS.gene028610:intron | 25.0% |
| ! | TACTAATCAACATTTATTGG+TGG | + | chr2.3:6214315-6214334 | None:intergenic | 25.0% |
| ! | TATTGTTAAGCGAATTTGAT+TGG | + | chr2.3:6213428-6213447 | None:intergenic | 25.0% |
| ! | TATTGTTAGGATGCAAAATA+TGG | - | chr2.3:6212929-6212948 | MS.gene028610:CDS | 25.0% |
| ! | TATTTATTCAAAGCTTGCAT+CGG | - | chr2.3:6212058-6212077 | MS.gene028610:CDS | 25.0% |
| ! | TGAACAATAATTATGCACTT+TGG | - | chr2.3:6214393-6214412 | MS.gene028610:CDS | 25.0% |
| ! | TTTATGATTAAACATGGATC+AGG | - | chr2.3:6212705-6212724 | MS.gene028610:CDS | 25.0% |
| !! | AATTTCTTATTGGTTGCTTA+GGG | - | chr2.3:6213704-6213723 | MS.gene028610:CDS | 25.0% |
| !! | TAATTTCTTATTGGTTGCTT+AGG | - | chr2.3:6213703-6213722 | MS.gene028610:CDS | 25.0% |
| !!! | AATTTGGCTTTTTATGCTAT+TGG | - | chr2.3:6212135-6212154 | MS.gene028610:intron | 25.0% |
| !!! | ATTTGGCTTTTTATGCTATT+GGG | - | chr2.3:6212136-6212155 | MS.gene028610:intron | 25.0% |
| !!! | CAACTTATAATAGCTTGTTT+TGG | + | chr2.3:6214541-6214560 | None:intergenic | 25.0% |
| !!! | CAATGCTAAGTTTTTTAAAC+TGG | + | chr2.3:6213203-6213222 | None:intergenic | 25.0% |
| !!! | TACTATTCTTTAGTTTGCTT+AGG | + | chr2.3:6213670-6213689 | None:intergenic | 25.0% |
| !!! | TCTCAATAACTGATTTGATA+AGG | - | chr2.3:6213242-6213261 | MS.gene028610:intron | 25.0% |
| AACAATCCAGCAAAATTTGT+TGG | - | chr2.3:6214621-6214640 | MS.gene028610:intron | 30.0% | |
| ACATTCAGAATGTTTAACTG+GGG | - | chr2.3:6213763-6213782 | MS.gene028610:intron | 30.0% | |
| ACCTTGATCTTGCAAATTAT+AGG | + | chr2.3:6213930-6213949 | None:intergenic | 30.0% | |
| ACTAAAGTAGATGGTATGAT+TGG | - | chr2.3:6214083-6214102 | MS.gene028610:intron | 30.0% | |
| ACTCATCATAGTGTAAGATT+TGG | - | chr2.3:6212090-6212109 | MS.gene028610:CDS | 30.0% | |
| AGTGATTAAAAGATCTAACC+TGG | + | chr2.3:6214021-6214040 | None:intergenic | 30.0% | |
| ATGAAATTGATTGAAGAAGC+TGG | - | chr2.3:6213836-6213855 | MS.gene028610:intron | 30.0% | |
| GATGAAAACAACAATGTTGA+AGG | - | chr2.3:6212636-6212655 | MS.gene028610:intron | 30.0% | |
| GTACATTCAGAATGTTTAAC+TGG | - | chr2.3:6213761-6213780 | MS.gene028610:intron | 30.0% | |
| GTGATTAAAAGATCTAACCT+GGG | + | chr2.3:6214020-6214039 | None:intergenic | 30.0% | |
| GTGGCATTTATGATTAAACA+TGG | - | chr2.3:6212699-6212718 | MS.gene028610:CDS | 30.0% | |
| TATATGCAACAATCTGCATT+AGG | + | chr2.3:6212873-6212892 | None:intergenic | 30.0% | |
| TGATGTTGAAGATGGAAATA+TGG | - | chr2.3:6213168-6213187 | MS.gene028610:CDS | 30.0% | |
| TGTTATAGTTCAAAGTTGGA+TGG | - | chr2.3:6213552-6213571 | MS.gene028610:CDS | 30.0% | |
| TGTTGAAGGGAATCTTATAA+AGG | - | chr2.3:6212650-6212669 | MS.gene028610:intron | 30.0% | |
| TGTTTAACTGGGGATATATT+TGG | - | chr2.3:6213773-6213792 | MS.gene028610:intron | 30.0% | |
| TTTCCTCTCAAGTATAGAAA+TGG | - | chr2.3:6213052-6213071 | MS.gene028610:intron | 30.0% | |
| ! | GATAAATGTGCAGATTTTGA+GGG | - | chr2.3:6214566-6214585 | MS.gene028610:CDS | 30.0% |
| ! | TGATAAATGTGCAGATTTTG+AGG | - | chr2.3:6214565-6214584 | MS.gene028610:CDS | 30.0% |
| ! | TTAAGACCAACAAATTTTGC+TGG | + | chr2.3:6214630-6214649 | None:intergenic | 30.0% |
| ! | TTATGCTATTGGGTTTTCTA+AGG | - | chr2.3:6212146-6212165 | MS.gene028610:intron | 30.0% |
| !! | GCAAAATTTGTTGGTCTTAA+AGG | - | chr2.3:6214630-6214649 | MS.gene028610:intron | 30.0% |
| !! | TTTGTTGGTCTTAAAGGATA+TGG | - | chr2.3:6214636-6214655 | MS.gene028610:intron | 30.0% |
| AACACGAGTTCAACAAATAG+AGG | + | chr2.3:6212026-6212045 | None:intergenic | 35.0% | |
| AATCATAAATGCCACATCCT+TGG | + | chr2.3:6212694-6212713 | None:intergenic | 35.0% | |
| ACCAAGATGGGTCATATATA+TGG | - | chr2.3:6214735-6214754 | MS.gene028610:CDS | 35.0% | |
| AGAAACAAAAAGGACCAAGA+TGG | - | chr2.3:6214722-6214741 | MS.gene028610:CDS | 35.0% | |
| AGCGTTACCTAGAAACAAAA+AGG | - | chr2.3:6214712-6214731 | MS.gene028610:intron | 35.0% | |
| AGTCCAAGCAAACATAGATT+TGG | - | chr2.3:6213958-6213977 | MS.gene028610:CDS | 35.0% | |
| CCAAGATGGGTCATATATAT+GGG | - | chr2.3:6214736-6214755 | MS.gene028610:CDS | 35.0% | |
| CGTTACGTCTAATACATGTT+TGG | - | chr2.3:6212399-6212418 | MS.gene028610:intron | 35.0% | |
| GAAACAAAAAGGACCAAGAT+GGG | - | chr2.3:6214723-6214742 | MS.gene028610:CDS | 35.0% | |
| GAACAACAAGGTGAGAAATT+TGG | - | chr2.3:6212119-6212138 | MS.gene028610:intron | 35.0% | |
| GGAGTAATTGTGTATCTTAG+AGG | - | chr2.3:6213863-6213882 | MS.gene028610:CDS | 35.0% | |
| GTCACATCTTCCTACTAAAT+GGG | - | chr2.3:6213512-6213531 | MS.gene028610:CDS | 35.0% | |
| GTCCAAGCAAACATAGATTT+GGG | - | chr2.3:6213959-6213978 | MS.gene028610:CDS | 35.0% | |
| TCACATCTTCCTACTAAATG+GGG | - | chr2.3:6213513-6213532 | MS.gene028610:CDS | 35.0% | |
| TCCAAGCAAACATAGATTTG+GGG | - | chr2.3:6213960-6213979 | MS.gene028610:CDS | 35.0% | |
| TGAAATAGACCCCATTTAGT+AGG | + | chr2.3:6213525-6213544 | None:intergenic | 35.0% | |
| TGCAAAATATGGAACTTCCA+CGG | - | chr2.3:6212940-6212959 | MS.gene028610:CDS | 35.0% | |
| TGTCACATCTTCCTACTAAA+TGG | - | chr2.3:6213511-6213530 | MS.gene028610:CDS | 35.0% | |
| TTAATGTATGTGACGCTTCA+AGG | - | chr2.3:6213448-6213467 | MS.gene028610:CDS | 35.0% | |
| TTCTTTGTAAGTGAAGCTGA+AGG | - | chr2.3:6212282-6212301 | MS.gene028610:intron | 35.0% | |
| ! | AATTCTAGCTAACCTTTCCT+TGG | + | chr2.3:6212368-6212387 | None:intergenic | 35.0% |
| ! | GCCTATAATTTGCAAGATCA+AGG | - | chr2.3:6213926-6213945 | MS.gene028610:CDS | 35.0% |
| ! | TTCTGTAGATTTGGTTGCAT+TGG | - | chr2.3:6213108-6213127 | MS.gene028610:CDS | 35.0% |
| !! | AGCGTCTAACGTTTTTAAGA+GGG | + | chr2.3:6212229-6212248 | None:intergenic | 35.0% |
| !! | TAGCGTCTAACGTTTTTAAG+AGG | + | chr2.3:6212230-6212249 | None:intergenic | 35.0% |
| !! | TCTTGGTCCTTTTTGTTTCT+AGG | + | chr2.3:6214722-6214741 | None:intergenic | 35.0% |
| ACATTGGAGTTCGAACTATG+AGG | - | chr2.3:6214589-6214608 | MS.gene028610:CDS | 40.0% | |
| ACCCCAAATCTATGTTTGCT+TGG | + | chr2.3:6213964-6213983 | None:intergenic | 40.0% | |
| AGAGCTGTGAGAACAGAAAA+TGG | + | chr2.3:6213145-6213164 | None:intergenic | 40.0% | |
| AGCATCTCTTGTTAGTACCA+AGG | - | chr2.3:6212674-6212693 | MS.gene028610:CDS | 40.0% | |
| ATAGTGTAAGATTTGGCCTG+TGG | - | chr2.3:6212097-6212116 | MS.gene028610:intron | 40.0% | |
| CCACCATTTCTATACTTGAG+AGG | + | chr2.3:6213058-6213077 | None:intergenic | 40.0% | |
| CCCATATATATGACCCATCT+TGG | + | chr2.3:6214739-6214758 | None:intergenic | 40.0% | |
| CCTCTCAAGTATAGAAATGG+TGG | - | chr2.3:6213055-6213074 | MS.gene028610:intron | 40.0% | |
| CTTAGGGAAACATAGGAGAT+GGG | - | chr2.3:6213720-6213739 | MS.gene028610:CDS | 40.0% | |
| GCAAAATATGGAACTTCCAC+GGG | - | chr2.3:6212941-6212960 | MS.gene028610:CDS | 40.0% | |
| GCTCTTGTTGATGTTGAAGA+TGG | - | chr2.3:6213160-6213179 | MS.gene028610:CDS | 40.0% | |
| GGATCAGGAATAGTTTCTGT+TGG | - | chr2.3:6212720-6212739 | MS.gene028610:CDS | 40.0% | |
| GGGATATATTTGGATCAGCT+CGG | - | chr2.3:6213783-6213802 | MS.gene028610:intron | 40.0% | |
| GTGTATCTTAGAGGTCATGA+AGG | - | chr2.3:6213872-6213891 | MS.gene028610:CDS | 40.0% | |
| TAATGCATTACGCCAAGGAA+AGG | - | chr2.3:6212353-6212372 | MS.gene028610:intron | 40.0% | |
| TACTGAGGCTTCTGTAGATT+TGG | - | chr2.3:6213099-6213118 | MS.gene028610:CDS | 40.0% | |
| TAGGTAACGCTTGTTTGCTT+CGG | + | chr2.3:6214703-6214722 | None:intergenic | 40.0% | |
| TATGTGACGCTTCAAGGTAT+CGG | - | chr2.3:6213454-6213473 | MS.gene028610:CDS | 40.0% | |
| TCATAGCCAAATCTAGTTGC+TGG | + | chr2.3:6213820-6213839 | None:intergenic | 40.0% | |
| TCCTTGGCGTAATGCATTAA+GGG | + | chr2.3:6212352-6212371 | None:intergenic | 40.0% | |
| TCGGAGAAAACGAGAGAAAT+TGG | - | chr2.3:6213473-6213492 | MS.gene028610:CDS | 40.0% | |
| TCTTGTTAGTACCAAGGATG+TGG | - | chr2.3:6212680-6212699 | MS.gene028610:CDS | 40.0% | |
| TTCCTTGGCGTAATGCATTA+AGG | + | chr2.3:6212353-6212372 | None:intergenic | 40.0% | |
| TTCTGTTGGCATGAAAGAAG+AGG | - | chr2.3:6212734-6212753 | MS.gene028610:CDS | 40.0% | |
| TTGAGAGGAAAAACATGACC+TGG | + | chr2.3:6213043-6213062 | None:intergenic | 40.0% | |
| TTGATTGAAGAAGCTGGAAG+AGG | - | chr2.3:6213842-6213861 | MS.gene028610:intron | 40.0% | |
| TTGGTTGCTTAGGGAAACAT+AGG | - | chr2.3:6213713-6213732 | MS.gene028610:CDS | 40.0% | |
| ! | ACCACTGTGATAGTGAAAGT+AGG | + | chr2.3:6212822-6212841 | None:intergenic | 40.0% |
| ! | ATAGAAATGGTGGAGTGCTT+AGG | - | chr2.3:6213065-6213084 | MS.gene028610:intron | 40.0% |
| ! | CACTGTGATAGTGAAAGTAG+GGG | + | chr2.3:6212820-6212839 | None:intergenic | 40.0% |
| ! | CCACTGTGATAGTGAAAGTA+GGG | + | chr2.3:6212821-6212840 | None:intergenic | 40.0% |
| ! | GAAGACGTGTTTGATGATAG+TGG | - | chr2.3:6212177-6212196 | MS.gene028610:intron | 40.0% |
| !! | AATGGAAGAGTACTCCTTAG+AGG | + | chr2.3:6212322-6212341 | None:intergenic | 40.0% |
| !! | ACCTGGTTTTCTTAAGTCCT+CGG | + | chr2.3:6213026-6213045 | None:intergenic | 40.0% |
| !! | ATGGAAGAGTACTCCTTAGA+GGG | + | chr2.3:6212321-6212340 | None:intergenic | 40.0% |
| !!! | GCTATTGGGTTTTCTAAGGT+TGG | - | chr2.3:6212150-6212169 | MS.gene028610:intron | 40.0% |
| ACGTGGGAAATCAAAGGACT+AGG | + | chr2.3:6211942-6211961 | None:intergenic | 45.0% | |
| ATTTGGCCTGTGGAACAACA+AGG | - | chr2.3:6212107-6212126 | MS.gene028610:intron | 45.0% | |
| CCCTACTTTCACTATCACAG+TGG | - | chr2.3:6212818-6212837 | MS.gene028610:CDS | 45.0% | |
| CGTGGGAAATCAAAGGACTA+GGG | + | chr2.3:6211941-6211960 | None:intergenic | 45.0% | |
| CTTAGAGGTCATGAAGGAAG+AGG | - | chr2.3:6213878-6213897 | MS.gene028610:CDS | 45.0% | |
| GAATCCTCTTCTTCAGTCTC+AGG | + | chr2.3:6212792-6212811 | None:intergenic | 45.0% | |
| GCTGTGAGAACAGAAAATGG+TGG | + | chr2.3:6213142-6213161 | None:intergenic | 45.0% | |
| GCTTAGGGAAACATAGGAGA+TGG | - | chr2.3:6213719-6213738 | MS.gene028610:CDS | 45.0% | |
| GGATATGGTTTAGCTGTGAC+AGG | - | chr2.3:6214651-6214670 | MS.gene028610:intron | 45.0% | |
| TACTCCTTAGAGGGACAATC+TGG | + | chr2.3:6212312-6212331 | None:intergenic | 45.0% | |
| TCAGTCTCAGGTGACATAAG+AGG | + | chr2.3:6212780-6212799 | None:intergenic | 45.0% | |
| TCCGAGGACTTAAGAAAACC+AGG | - | chr2.3:6213022-6213041 | MS.gene028610:intron | 45.0% | |
| TCTCAGGTGACATAAGAGGA+AGG | + | chr2.3:6212776-6212795 | None:intergenic | 45.0% | |
| TGAGCATGTGGCTGTTGTAA+AGG | - | chr2.3:6213578-6213597 | MS.gene028610:CDS | 45.0% | |
| TGATCCAGATTGTCCCTCTA+AGG | - | chr2.3:6212305-6212324 | MS.gene028610:intron | 45.0% | |
| ! | GTAGATTTGGTTGCATTGGC+AGG | - | chr2.3:6213112-6213131 | MS.gene028610:CDS | 45.0% |
| ! | GTGATGACGTGGGAAATCAA+AGG | + | chr2.3:6211948-6211967 | None:intergenic | 45.0% |
| ! | TGCATTAAGGGCATGCTCAA+TGG | + | chr2.3:6212340-6212359 | None:intergenic | 45.0% |
| !! | ACCTTGAATTGGTGATGACG+TGG | + | chr2.3:6211959-6211978 | None:intergenic | 45.0% |
| !! | CCTTGAATTGGTGATGACGT+GGG | + | chr2.3:6211958-6211977 | None:intergenic | 45.0% |
| !! | GTCATGAAGGAAGAGGCATT+GGG | - | chr2.3:6213885-6213904 | MS.gene028610:CDS | 45.0% |
| !! | GTGCAGATTTTGAGGGACAT+TGG | - | chr2.3:6214573-6214592 | MS.gene028610:CDS | 45.0% |
| !! | TTCTCACCTTGTTGTTCCAC+AGG | + | chr2.3:6212116-6212135 | None:intergenic | 45.0% |
| AAGTCCTCGGATTTCGACTC+TGG | + | chr2.3:6213013-6213032 | None:intergenic | 50.0% | |
| ATCTCCAGAGTCGAAATCCG+AGG | - | chr2.3:6213006-6213025 | MS.gene028610:intron | 50.0% | |
| CCCACGTCATCACCAATTCA+AGG | - | chr2.3:6211955-6211974 | MS.gene028610:CDS | 50.0% | |
| CGCTTGTTTGCTTCGGTGAT+TGG | + | chr2.3:6214696-6214715 | None:intergenic | 50.0% | |
| CTGTGGCCAGCAACTAGATT+TGG | - | chr2.3:6213811-6213830 | MS.gene028610:intron | 50.0% | |
| GATGCTCGTGAGTATGGCAT+TGG | - | chr2.3:6213992-6214011 | MS.gene028610:CDS | 50.0% | |
| GCCCTTAATGCATTACGCCA+AGG | - | chr2.3:6212348-6212367 | MS.gene028610:intron | 50.0% | |
| GCTGTTGATGCTCGTGAGTA+TGG | - | chr2.3:6213986-6214005 | MS.gene028610:CDS | 50.0% | |
| GTCACCTGAGACTGAAGAAG+AGG | - | chr2.3:6212785-6212804 | MS.gene028610:CDS | 50.0% | |
| GTTGGATGGAACTGAGCATG+TGG | - | chr2.3:6213566-6213585 | MS.gene028610:CDS | 50.0% | |
| TAGGAGAGCTGGTCATACTG+AGG | - | chr2.3:6213084-6213103 | MS.gene028610:intron | 50.0% | |
| ! | GGTCATGAAGGAAGAGGCAT+TGG | - | chr2.3:6213884-6213903 | MS.gene028610:CDS | 50.0% |
| !! | GAAGGAAGAGGCATTGGGTT+AGG | - | chr2.3:6213890-6213909 | MS.gene028610:CDS | 50.0% |
| !! | TCGGTGATTGGTGTTAGCAC+AGG | + | chr2.3:6214684-6214703 | None:intergenic | 50.0% |
| TGGAACTTCCACGGGCGTAT+CGG | - | chr2.3:6212949-6212968 | MS.gene028610:intron | 55.0% | |
| !! | TGAGTATGGCATTGGTGCCC+AGG | - | chr2.3:6214000-6214019 | MS.gene028610:CDS | 55.0% |
| ! | GGTGGAGTGCTTAGGAGAGC+TGG | - | chr2.3:6213073-6213092 | MS.gene028610:intron | 60.0% |
| !! | GGATCAGCTCGGTGTGACTG+TGG | - | chr2.3:6213794-6213813 | MS.gene028610:intron | 60.0% |
| !! | TTCCACGGGCGTATCGGCTG+CGG | - | chr2.3:6212955-6212974 | MS.gene028610:intron | 65.0% |
| ATCCGCAGCCGATACGCCCG+TGG | + | chr2.3:6212960-6212979 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 6211921 | 6214770 | 6211921 | ID=MS.gene028610 |
| chr2.3 | mRNA | 6211921 | 6214770 | 6211921 | ID=MS.gene028610.t1;Parent=MS.gene028610 |
| chr2.3 | exon | 6214715 | 6214770 | 6214715 | ID=MS.gene028610.t1.exon1;Parent=MS.gene028610.t1 |
| chr2.3 | CDS | 6214715 | 6214770 | 6214715 | ID=cds.MS.gene028610.t1;Parent=MS.gene028610.t1 |
| chr2.3 | exon | 6214317 | 6214620 | 6214317 | ID=MS.gene028610.t1.exon2;Parent=MS.gene028610.t1 |
| chr2.3 | CDS | 6214317 | 6214620 | 6214317 | ID=cds.MS.gene028610.t1;Parent=MS.gene028610.t1 |
| chr2.3 | exon | 6213852 | 6214073 | 6213852 | ID=MS.gene028610.t1.exon3;Parent=MS.gene028610.t1 |
| chr2.3 | CDS | 6213852 | 6214073 | 6213852 | ID=cds.MS.gene028610.t1;Parent=MS.gene028610.t1 |
| chr2.3 | exon | 6213428 | 6213753 | 6213428 | ID=MS.gene028610.t1.exon4;Parent=MS.gene028610.t1 |
| chr2.3 | CDS | 6213428 | 6213753 | 6213428 | ID=cds.MS.gene028610.t1;Parent=MS.gene028610.t1 |
| chr2.3 | exon | 6213092 | 6213221 | 6213092 | ID=MS.gene028610.t1.exon5;Parent=MS.gene028610.t1 |
| chr2.3 | CDS | 6213092 | 6213221 | 6213092 | ID=cds.MS.gene028610.t1;Parent=MS.gene028610.t1 |
| chr2.3 | exon | 6212670 | 6212966 | 6212670 | ID=MS.gene028610.t1.exon6;Parent=MS.gene028610.t1 |
| chr2.3 | CDS | 6212670 | 6212966 | 6212670 | ID=cds.MS.gene028610.t1;Parent=MS.gene028610.t1 |
| chr2.3 | exon | 6211921 | 6212112 | 6211921 | ID=MS.gene028610.t1.exon7;Parent=MS.gene028610.t1 |
| chr2.3 | CDS | 6211921 | 6212112 | 6211921 | ID=cds.MS.gene028610.t1;Parent=MS.gene028610.t1 |
| Gene Sequence |
| Protein sequence |
