AlfalfaGEDB | MS.gene068045

M. sativa cultivar XinJiangDaYe / MS.gene068045

KEGG: K14652
GO: GO:0003674 GO:0003824 GO:0003933 GO:0003935 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0008686 GO:0009058 GO:0009110 GO:0009231 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0016829 GO:0016830 GO:0017144 GO:0018130 GO:0019238 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00925.23 PF00926.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068045.t1	RHN62690.1	97	508	9	1	1	508	34	535	1.10E-277	965.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068045.t1	P47924	81.4	462	82	2	31	488	68	529	8.5e-218	757.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068045.t1	A0A396IAS6	97.0	508	9	1	1	508	34	535	8.0e-278	965.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04915	MS.gene068045	0.811942	5.44E-51	-1.69E-46
MS.gene04917	MS.gene068045	0.808607	2.85E-50	-1.69E-46
MS.gene049758	MS.gene068045	0.847755	9.46E-60	-1.69E-46
MS.gene050128	MS.gene068045	0.81963	1.05E-52	-1.69E-46
MS.gene050226	MS.gene068045	0.81364	2.31E-51	-1.69E-46
MS.gene050301	MS.gene068045	0.805797	1.12E-49	-1.69E-46
MS.gene050623	MS.gene068045	-0.819842	9.39E-53	-1.69E-46
MS.gene050642	MS.gene068045	0.802796	4.73E-49	-1.69E-46
MS.gene050762	MS.gene068045	0.811961	5.39E-51	-1.69E-46
MS.gene050763	MS.gene068045	0.812291	4.57E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene028619	MS.gene068045	PPI
MS.gene068045	MS.gene31184	PPI
MS.gene068045	MS.gene028610	PPI
MS.gene068045	MS.gene31178	PPI
MS.gene071560	MS.gene068045	PPI
MS.gene30927	MS.gene068045	PPI
MS.gene30932	MS.gene068045	PPI
MS.gene45469	MS.gene068045	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene068045.t1	MTR_4g094130	96.850	508	10	1	1	508	34	535	998
MS.gene068045.t1	MTR_4g094130	98.526	407	6	0	102	508	1	407	824
MS.gene068045.t1	MTR_2g009270	76.608	513	107	3	7	507	29	540	806
MS.gene068045.t1	MTR_2g096330	62.144	457	151	4	37	485	62	504	578

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068045.t1	AT5G64300	77.355	499	95	4	9	489	32	530	0.0	786
MS.gene068045.t1	AT2G22450	71.667	420	109	4	45	463	64	474	0.0	612
MS.gene068045.t1	AT5G59750	59.362	470	186	2	20	484	30	499	0.0	577
MS.gene068045.t1	AT5G59750	55.357	504	186	3	20	484	30	533	0.0	560
MS.gene068045.t1	AT5G59750	57.767	412	169	2	20	426	30	441	3.82e-168	483

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Find 143 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGAAGGAGATCTAATAA+TGG	0.473118	4.3:+20671879	MS.gene068045:CDS
AAAGCTGCGTTGACCTCTGG+AGG	0.591046	4.3:+20671532	MS.gene068045:CDS
AAATGAAAACAGGAGATACT+TGG	0.489544	4.3:+20675641	MS.gene068045:CDS
AACAATCCGGCAAAATATGT+TGG	0.476857	4.3:+20675561	MS.gene068045:CDS
AAGCATGAAAGAGGAAGACC+TGG	0.546167	4.3:+20671969	MS.gene068045:CDS
AAGCTTAGGTAATCTAGCCA+TGG	0.622161	4.3:-20672713	None:intergenic
AAGGAAGAGAGATAAACTAG+TGG	0.595527	4.3:+20673716	MS.gene068045:CDS
AAGGAAGCTCTAATCTCTCC+AGG	0.494013	4.3:-20671987	None:intergenic
AATGGGTCACATGTATGGCT+TGG	0.585495	4.3:+20675680	MS.gene068045:CDS
AATTGTAATTGCAGATATTG+AGG	0.477500	4.3:+20675505	MS.gene068045:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACGAAGGAGATCTAATAA+TGG	+	chr4.3:20671879-20671898	MS.gene068045:CDS	30.0%
AAATGAAAACAGGAGATACT+TGG	+	chr4.3:20675641-20675660	MS.gene068045:CDS	30.0%
ACTGGAATCATCAATATTAC+TGG	-	chr4.3:20675733-20675752	None:intergenic	30.0%
ACTTAAAAACCCTCTCATAT+TGG	-	chr4.3:20672841-20672860	None:intergenic	30.0%
AGACCTAAAAAATGAAGATC+TGG	+	chr4.3:20671558-20671577	MS.gene068045:CDS	30.0%
AGGTAAGGAACAAAAAATAG+AGG	-	chr4.3:20673600-20673619	None:intergenic	30.0%
AGTAAATGTCTGTTACATAC+TGG	-	chr4.3:20672297-20672316	None:intergenic	30.0%
AGTAATGACAATAGTAGTAG+AGG	-	chr4.3:20673097-20673116	None:intergenic	30.0%
AGTTTGTATAAGCATGAAAG+AGG	+	chr4.3:20671960-20671979	MS.gene068045:CDS	30.0%
ATAAAAATTGAGTCACATCG+AGG	+	chr4.3:20674115-20674134	MS.gene068045:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	20671448	20675770	20671448	ID=MS.gene068045
chr4.3	mRNA	20671448	20675770	20671448	ID=MS.gene068045.t1;Parent=MS.gene068045
chr4.3	exon	20671448	20671750	20671448	ID=MS.gene068045.t1.exon1;Parent=MS.gene068045.t1
chr4.3	CDS	20671448	20671750	20671448	ID=cds.MS.gene068045.t1;Parent=MS.gene068045.t1
chr4.3	exon	20671847	20672068	20671847	ID=MS.gene068045.t1.exon2;Parent=MS.gene068045.t1
chr4.3	CDS	20671847	20672068	20671847	ID=cds.MS.gene068045.t1;Parent=MS.gene068045.t1
chr4.3	exon	20672469	20672791	20672469	ID=MS.gene068045.t1.exon3;Parent=MS.gene068045.t1
chr4.3	CDS	20672469	20672791	20672469	ID=cds.MS.gene068045.t1;Parent=MS.gene068045.t1
chr4.3	exon	20673710	20673839	20673710	ID=MS.gene068045.t1.exon4;Parent=MS.gene068045.t1
chr4.3	CDS	20673710	20673839	20673710	ID=cds.MS.gene068045.t1;Parent=MS.gene068045.t1
chr4.3	exon	20675029	20675325	20675029	ID=MS.gene068045.t1.exon5;Parent=MS.gene068045.t1
chr4.3	CDS	20675029	20675325	20675029	ID=cds.MS.gene068045.t1;Parent=MS.gene068045.t1
chr4.3	exon	20675519	20675770	20675519	ID=MS.gene068045.t1.exon6;Parent=MS.gene068045.t1
chr4.3	CDS	20675519	20675770	20675519	ID=cds.MS.gene068045.t1;Parent=MS.gene068045.t1

Gene Sequence

>MS.gene068045

ATGATTTATGTGCGTGGCTCAGATTTGGCATTTGTTCGGCTGAGCTCAAAATTCCCTTCATGTCGCAATGCGGTATGTAGAGTTAAAGCTGCGTTGACCTCTGGAGGAGGAGACCTAAAAAATGAAGATCTGGTTGGCGTTGAATCAGCACAACTTAATGCGGTAGCGCTTGGAACACTGGGAGCAGATACAGCTCTAACAGGCAGTGGCTTTTCTGATGATAACGATGACTTCGATTCAGACAGTCCAACAAAAGGTTTTGCTTCCATACCTGAGGCTATTGAAGACATTCGGAATGGAAAGGTCGGTACTCTGTCTCTCTGTGGGTATTCTATATAAAAGTTTTGGTTTTGTTGCCTCCACTTAGATTTCCGTTATTAACTGACATTAGTACTTCAGATGGTAGTGGTTGTAGATGACGAGGACAGAGAAAACGAAGGAGATCTAATAATGGCAGCACAGTTGGCAACACCTGAGGCTATGGCTTTTATTGTGAAGCACGGAACTGGCATAGTTTGTATAAGCATGAAAGAGGAAGACCTGGAGAGATTAGAGCTTCCTTTGATGGTCAACAGTCGGGATAATGATGAGAAACTCCGTACAGCATTCACTGTGACAGTGGTATGTACAATTTGGTGCGTGCATTTTTTTATCTGGAGCTAGTTCTGTATCTTTCTGATCAAAACTCTTCCATTCTTACATCATCTAAAACACTATTTACTCACCTTCATGTGATGGTCAACTTTAGGGAATAATTTCTCTCACCCTAGCTGCACTTGTGTAGGCATTAAGTTCGACAAAAAATCAGCGTGACTTCACTTTGTTGCATTTAATATCTTTTGTCTCCCAGTATGTAACAGACATTTACTTATTATATACTAGAATAGCATCATGTCATGTTTTAAAAAAAAAAAAAAATAGCATCATGTCAAAAACAGTTATTGAAATTTAATAAAATATAACTTTGTGGTAGAAATTTTGTTCCTACGCAACTCAGGAACTTATCAATGCAATTTTGTAGGATGCCAAATATGGTACCACCACAGGTGTGTCGGCTCAGGATAGGGCAACCACAGTTTTGGCCCTTGCATCCAAAGATTCAAAACCAAGTGATTTCAACCGCCCAGGCCATATTTTCCCGCTAAAATACAGGGAAGGTGGTATCTTGAAGAGAGCTGGACATACAGAAGCTTCAGTTGATCTTGCAGTACTTGCTGGTTTGGATCCTGTGGCAGTTCTGTGTGAGGTTGTAGATGATGATGGTTCCATGGCTAGATTACCTAAGCTTCGCCAGTTTGCAGAGCGTGAAAATTTGAAAATTATATCTATTGCTGACTTAATAAGGTACTCAATGTTGTAGCATGTTGCGAAATACGTTGTATGTTAGGACCCAATATGAGAGGGTTTTTAAGTAATTAGTAGGTGGCTAAGTAGGGTTAAGTAGATTATTAGCAAGTTTCTCATTAGGGTTAAATAATAAAAAGCTCATGAGGGTTAAATAATAGAATGTTCTCTTTATTTGTATATAAAGGGAAATTCTTATGAGTTGTAGGTTTGACGGAATATGTTTCTGTTAGGACCAGAGTAGGATTCCTCTGAGTCAGTGAGTTGTGTCGGAGCTTAACTTTGGTAGTAGTTAGAGAAACCCTCTACTACTATTGTCATTACTATCAATAAAGCACCCTATTTTCCTTAATTGTCATCTATTTCTTCTTGTTTGTGCTGTGTTACTGTTGGTTTATTGCAGGATCCATTGGGTTCTACCATTGTATGCAATTTTTGTTGTCGGTCACGTTCATATTTTGCTTTCAGTTACAGCTAGCATAATTTAAATCCCTCATGTTGTCTGCTACCGTGATTTGTCTTTCAAAAATTCGAACTACATAACTAGAAATTCAATCAATTTGGTTTTTTGTGGTGCTTGCTCCTAATTTTAGAGGTTGCTATCAGTCAATTTTCATGATTGCTTATGTGTTAAGTTCTTTTTTCTACTTTGTGCATTTCACTGAATATATCTTTTCTATACCATTACAAAAATTGAAATCCTATCTTGTTTATCTTCCATTAAATACCTTGCACTGCAGTTATTAAACAAAAAATCTCCTTTAAGCGCAGTTAAATTTTTCCGTGGTTATTTTGTCTTTATATGCCTCTATTTTTTGTTCCTTACCTGATTCATCTTTAGCTAATTTTTCTTCCTGGATTCTTTTTGTTTCTTTTCTGGTTACCTATCAAGGAGATTAACACCTATTGGTCTGGCAGGTATAGAAGGAAGAGAGATAAACTAGTGGAACGTGCTGGTGCTGCACTAATACCAACAATGTGGGGGCCATTCACAGCTAACTGTTATAGGTCACTTTTAGATGGGATGGAGCATATTGCGATGGTAAAGGTGAGAAATCGCGTGTCTATATTGAACTATATATATGGATAGTAATATGCATGAATATTTTTGATAGTTTAACTTTGATTTTAACTAAATGGATGAGAAAGCATAAGAGAGATACCAATATGGTAGAGCAATATGATTTAGCTAATTAGCACTTCTATGTTAAGCATACAACACTGCATTATTTTCTATTCTTCAGTCAAACCTTTTTTTTTAATCATATATTGATAATAACCTGTTGTTACATTGCCGTGGCTGTCAAAAAAATAAATAAATAAATAAAAATTGAGTCACATCGAGGCTGCTGTTTTCCATACTTTCTTTAGATTTTTTTTATATCCTGCCTGCTGAGGGTGTAATAATAATAGTATGATACTAAGAAGCCCAATTCTTGAAGTCCAGAGAGAGTTTCAACTCACAACATTCCAATACATAACTTGTTTGATGAAGTCCCTACATTTGGAATAGAAGCTAAGCTATTGGCATAAAGGAAAATGACATACTTCCCTAGGATTGGCACCTTAAAATATCGAACTACTTACAAATTGTCTGCCAGCTGCCAAGGCTAGAAGTCCCAAAAAATCTCAGATAGGGGCCTTCGTCTTTTTCCCGTGAGTTAACTTGAAATTCTGCAGCATTGTCCTGATGGCTTTGCAGAGTTCTGATCCACAAATACTTTGGCTTCAACAAAATAAATGATATAGAATGCCTGAGCAGGCAGATGAATGTCCCTGAATTTTTTCAAAATGAATAGAGAAGAAAAAGGTAAAAAGAACCTTGATCCAGGGTCCACAAATAGGATCCACTAAGAGGTAAACTTTGTGTGTTTAGGCCACTCTAATGCCCACAAGATTGAGTGAAGTCTTGGCCAGTCCCAGGGATCTAGTCATCTTTCTATTTGGATGTGTAGCCCAGGAATGGAATTCTCATTGACTGAAATTGGGATGTCAGTCTACTTGTTATCCTTTAACTGACAATATCAGTTTTTTTTTTATTTTCTTTAGGTGATAAATTGATGTACACCCCTTTTTTCAACATTTTTGCATTCAAGGCATTTTCTATAAGCCTGCAGGATTTGAAAATCGGCAAACTCTTCCAATTATCTTGAACCTTTCAATTTTAAATTTTATATTGCTTGATTCAATACTCGACACTTAGCCTTTGTTATGGTTGGACATTTCTTATTTAACAGGGTGACATTGGGGATGGATGTGATGTTCTTGTGAGGGTACACTCAGAGTGTCTCACAGGAGACATATTTGGATCTGCCAGGTGTGACTGCGGAAATCAATTGGCTCTTGCAATGCAACAGATTGAGGCTGCTGGCAGAGGTGTGTTGGTATATCTTCGAGGACATGAAGGAAGGGGTATTGGATTGGGCCACAAGCTTCGTGCTTATAACCTACAGGATGAGGGAAGGGATACTGTAGAAGCCAATGAGGAGTTGGGATTGCCTGTTGACTCAAGGGAGTATGGAATTGGTGCACAGGTAATTATAATAAAAATAATTAGTCGCTTGAATATTGAACATCTTATACTCAATTATTTTACTGTATTCAATTCATGGTGATTTACATGATTATTAAGTTCACTGGCATGCTATTGTCCATACAACATAGAACTAGATGTTTTAGGCAGTTGGATTCACTCATAATGGTTAGAATTTGAAATTGTAATTGCAGATATTGAGGGACTTGGGTGTTCGTTCTATGAAGCTAATGACAAACAATCCGGCAAAATATGTTGGGCTCAAAGGTTATGGTTTGTCCATTTCAGGTAGGATCCCATTGTTATCACTTATCACAAATGAAAACAGGAGATACTTGGAAACCAAACGTGTGAAAATGGGTCACATGTATGGCTTGGAATTTAACAGCAAATTGAATGGTAATGCCAGTAATATTGATGATTCCAGTACTGCTCCTGGCACATAA

Protein sequence

>MS.gene068045.t1

MIYVRGSDLAFVRLSSKFPSCRNAVCRVKAALTSGGGDLKNEDLVGVESAQLNAVALGTLGADTALTGSGFSDDNDDFDSDSPTKGFASIPEAIEDIRNGKMVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCISMKEEDLERLELPLMVNSRDNDEKLRTAFTVTVDAKYGTTTGVSAQDRATTVLALASKDSKPSDFNRPGHIFPLKYREGGILKRAGHTEASVDLAVLAGLDPVAVLCEVVDDDGSMARLPKLRQFAERENLKIISIADLIRYRRKRDKLVERAGAALIPTMWGPFTANCYRSLLDGMEHIAMVKGDIGDGCDVLVRVHSECLTGDIFGSARCDCGNQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDEGRDTVEANEELGLPVDSREYGIGAQILRDLGVRSMKLMTNNPAKYVGLKGYGLSISGRIPLLSLITNENRRYLETKRVKMGHMYGLEFNSKLNGNASNIDDSSTAPGT