AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028458


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028458.t1 MTR_4g094130 96.654 508 11 1 1 508 34 535 0.0 997
MS.gene028458.t1 MTR_4g094130 98.280 407 7 0 102 508 1 407 0.0 821
MS.gene028458.t1 MTR_2g009270 76.413 513 108 3 7 507 29 540 0.0 803
MS.gene028458.t1 MTR_2g096330 61.926 457 152 4 37 485 62 504 0.0 575
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028458.t1 AT5G64300 77.154 499 96 4 9 489 32 530 0.0 783
MS.gene028458.t1 AT2G22450 71.429 420 110 4 45 463 64 474 0.0 610
MS.gene028458.t1 AT5G59750 59.149 470 187 2 20 484 30 499 0.0 573
MS.gene028458.t1 AT5G59750 55.159 504 187 3 20 484 30 533 0.0 557
MS.gene028458.t1 AT5G59750 57.767 412 169 2 20 426 30 441 2.81e-168 483

Find 144 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTGTGGTGGTACCATATT+TGG 0.201373 4.1:-19807597 None:intergenic
TATCTATTGCTGACTTAATA+AGG 0.228563 4.1:+19807894 MS.gene028458:CDS
GGTTATGGTTTGTCCATTTC+AGG 0.231937 4.1:+19810718 MS.gene028458:CDS
GTTGATCTTGCAGTACTTGC+TGG 0.298152 4.1:+19807767 MS.gene028458:CDS
TGTCTCACAGGAGACATATT+TGG 0.327946 4.1:+19810204 MS.gene028458:CDS
GAGATTAGAGCTTCCTTTGA+TGG 0.335212 4.1:+19807117 MS.gene028458:CDS
CATTCACAGCTAACTGTTAT+AGG 0.336467 4.1:+19808903 MS.gene028458:CDS
GGATAGGGCAACCACAGTTT+TGG 0.339372 4.1:+19807631 MS.gene028458:CDS
CAATGCGATCCTACCTGAAA+TGG 0.359168 4.1:-19810731 None:intergenic
ACTGGAATCATCAATATTAC+TGG 0.361001 4.1:-19810857 None:intergenic
TCTTGCAGTACTTGCTGGTT+TGG 0.375590 4.1:+19807772 MS.gene028458:CDS
TATGTTGGGCTCAAAGGTTA+TGG 0.393304 4.1:+19810703 MS.gene028458:CDS
CCTGTTGACTCAAGGGAGTA+TGG 0.400777 4.1:+19810417 MS.gene028458:CDS
GGACATGAAGGAAGGGGTAT+TGG 0.405006 4.1:+19810315 MS.gene028458:CDS
GTGACCCATCTTCACACGTT+TGG 0.413549 4.1:-19810794 None:intergenic
TTATTTAACAGGGTGACATT+GGG 0.414280 4.1:+19810145 MS.gene028458:intron
ATTGGTCTGGCAGGTATAGA+AGG 0.425872 4.1:+19808822 MS.gene028458:intron
GCTCAGATTTGGCATTTGTT+CGG 0.426151 4.1:+19806588 MS.gene028458:CDS
TCCTTTGATGGTCAACAGTC+GGG 0.426635 4.1:+19807129 MS.gene028458:CDS
GTTAAAGCTGCGTTGACCTC+TGG 0.428144 4.1:+19806653 MS.gene028458:CDS
TTTATTGTGAAGCACGGAAC+TGG 0.428836 4.1:+19807058 MS.gene028458:CDS
TCATGTGCGTGGCTCAGATT+TGG 0.436104 4.1:+19806577 MS.gene028458:CDS
TGCGGTAGCGCTTGGAACAC+TGG 0.436511 4.1:+19806730 MS.gene028458:CDS
GAAGGAAGGGGTATTGGATT+GGG 0.436773 4.1:+19810321 MS.gene028458:CDS
CCTGGGCGGTTGAAATCACT+TGG 0.436809 4.1:-19807677 None:intergenic
CTTATTTAACAGGGTGACAT+TGG 0.437054 4.1:+19810144 MS.gene028458:intron
CAGCTTAATGCGGTAGCGCT+TGG 0.438853 4.1:+19806722 MS.gene028458:CDS
TTATGTGCCAGGAGCAGTAC+TGG 0.441984 4.1:-19810875 None:intergenic
TCTAATAATGGCAGCACAGT+TGG 0.442929 4.1:+19807015 MS.gene028458:CDS
TGAAGGAAGGGGTATTGGAT+TGG 0.444630 4.1:+19810320 MS.gene028458:CDS
CAGGTGTGTCGGCTCAGGAT+AGG 0.455862 4.1:+19807615 MS.gene028458:CDS
GGAAACCAAACGTGTGAAGA+TGG 0.457631 4.1:+19810789 MS.gene028458:CDS
CCATACTCCCTTGAGTCAAC+AGG 0.462092 4.1:-19810417 None:intergenic
GCGGTAGCGCTTGGAACACT+GGG 0.465356 4.1:+19806731 MS.gene028458:CDS
CACTTATCACAAATGAAAAC+AGG 0.465466 4.1:+19810758 MS.gene028458:CDS
GAATTTAACAGCAAATTGAA+TGG 0.466315 4.1:+19810829 MS.gene028458:CDS
GGGGCAGATACAGCTCTAAC+AGG 0.470368 4.1:+19806752 MS.gene028458:CDS
AGGCAATCCCAACTCCTCAT+TGG 0.470707 4.1:-19810397 None:intergenic
GCAAAATATGTTGGGCTCAA+AGG 0.471659 4.1:+19810697 MS.gene028458:CDS
AAACGAAGGAGATCTAATAA+TGG 0.473118 4.1:+19807003 MS.gene028458:CDS
AACAATCCGGCAAAATATGT+TGG 0.476857 4.1:+19810688 MS.gene028458:CDS
AATTGTAATTGCAGATATTG+AGG 0.477500 4.1:+19810632 MS.gene028458:intron
TCTGCAAACTGGCGAAGCTT+AGG 0.478958 4.1:-19807851 None:intergenic
AGGTGTGTCGGCTCAGGATA+GGG 0.482470 4.1:+19807616 MS.gene028458:CDS
CTGAGGCTATTGAAGACATT+CGG 0.487102 4.1:+19806843 MS.gene028458:CDS
GTGTGACTGCGGAAATCAAT+TGG 0.489196 4.1:+19810236 MS.gene028458:CDS
AAATGAAAACAGGAGATACT+TGG 0.489544 4.1:+19810768 MS.gene028458:CDS
CAGATTGAGGCTGCTGGCAG+AGG 0.491152 4.1:+19810273 MS.gene028458:CDS
TGTAGAAGCCAATGAGGAGT+TGG 0.491158 4.1:+19810389 MS.gene028458:CDS
TGCTTATAACCTACAGGATG+AGG 0.491407 4.1:+19810356 MS.gene028458:CDS
AAGGAAGCTCTAATCTCTCC+AGG 0.494013 4.1:-19807111 None:intergenic
CACCACAGGTGTGTCGGCTC+AGG 0.495943 4.1:+19807610 MS.gene028458:CDS
GTTGGCAACACCTGAGGCTA+TGG 0.497594 4.1:+19807033 MS.gene028458:CDS
GCCAAATATGGTACCACCAC+AGG 0.505213 4.1:+19807596 MS.gene028458:CDS
ACAATCCGGCAAAATATGTT+GGG 0.506282 4.1:+19810689 MS.gene028458:CDS
GACTCAAGGGAGTATGGAAT+TGG 0.510546 4.1:+19810423 MS.gene028458:CDS
ATTGTAATTGCAGATATTGA+GGG 0.510691 4.1:+19810633 MS.gene028458:intron
TGGGATTGCCTGTTGACTCA+AGG 0.511648 4.1:+19810409 MS.gene028458:CDS
GATTCAGACAGTCCAACAAA+AGG 0.513016 4.1:+19806806 MS.gene028458:CDS
TTTAGCGGGAAAATATGGCC+TGG 0.513539 4.1:-19807695 None:intergenic
TTAGCGGGAAAATATGGCCT+GGG 0.516577 4.1:-19807694 None:intergenic
TTCCTTTGATGGTCAACAGT+CGG 0.517538 4.1:+19807128 MS.gene028458:CDS
GGTGGTATCTTGAAGAGAGC+TGG 0.518284 4.1:+19807728 MS.gene028458:CDS
ATTGCAGATATTGAGGGACT+TGG 0.519933 4.1:+19810639 MS.gene028458:intron
GTCTTCAATAGCCTCAGGTA+TGG 0.520814 4.1:-19806837 None:intergenic
GGGATTGCCTGTTGACTCAA+GGG 0.524496 4.1:+19810410 MS.gene028458:CDS
CTATAACAGTTAGCTGTGAA+TGG 0.526297 4.1:-19808902 None:intergenic
TCTTGCAATGCAACAGATTG+AGG 0.526543 4.1:+19810260 MS.gene028458:CDS
GTAGAAGCCAATGAGGAGTT+GGG 0.529410 4.1:+19810390 MS.gene028458:CDS
TCCCGACTGTTGACCATCAA+AGG 0.529835 4.1:-19807130 None:intergenic
TTGATTTCCGCAGTCACACC+TGG 0.532360 4.1:-19810232 None:intergenic
GTGAAGATGGGTCACATGTA+TGG 0.541106 4.1:+19810802 MS.gene028458:CDS
GGCTGCTGGCAGAGGTGTGT+TGG 0.543552 4.1:+19810281 MS.gene028458:CDS
GGAGCATATTGCGATGGTAA+AGG 0.544393 4.1:+19808943 MS.gene028458:CDS
AAGCATGAAAGAGGAAGACC+TGG 0.546167 4.1:+19807093 MS.gene028458:CDS
CGAATGTCTTCAATAGCCTC+AGG 0.546934 4.1:-19806842 None:intergenic
GAAGCTAATGACAAACAATC+CGG 0.547961 4.1:+19810675 MS.gene028458:CDS
GCTTCGTGCTTATAACCTAC+AGG 0.549079 4.1:+19810350 MS.gene028458:CDS
TGCACTAATACCAACAATGT+GGG 0.551549 4.1:+19808877 MS.gene028458:CDS
GATGATTCCAGTACTGCTCC+TGG 0.554163 4.1:+19810868 MS.gene028458:CDS
GAAACCAAACGTGTGAAGAT+GGG 0.558278 4.1:+19810790 MS.gene028458:CDS
ATGGTTTGTCCATTTCAGGT+AGG 0.561182 4.1:+19810722 MS.gene028458:CDS
ACAATAAAAGCCATAGCCTC+AGG 0.561239 4.1:-19807043 None:intergenic
TCTTCGAGGACATGAAGGAA+GGG 0.561452 4.1:+19810308 MS.gene028458:CDS
ATGGATGTGATGTTCTTGTG+AGG 0.562152 4.1:+19810169 MS.gene028458:CDS
ATTAGTACTTCAGATGGTAG+TGG 0.563625 4.1:+19806958 MS.gene028458:intron
ATGCAACAGATTGAGGCTGC+TGG 0.565430 4.1:+19810267 MS.gene028458:CDS
GAGACATATTTGGATCTGCC+AGG 0.566429 4.1:+19810214 MS.gene028458:CDS
CCAAGTGATTTCAACCGCCC+AGG 0.570750 4.1:+19807677 MS.gene028458:CDS
GGAGTATGGAATTGGTGCAC+AGG 0.571226 4.1:+19810431 MS.gene028458:CDS
TAACAGGGTGACATTGGGGA+TGG 0.572072 4.1:+19810150 MS.gene028458:intron
TTGCAGATATTGAGGGACTT+GGG 0.572398 4.1:+19810640 MS.gene028458:intron
GCACTAATACCAACAATGTG+GGG 0.575469 4.1:+19808878 MS.gene028458:CDS
AGTTTGTATAAGCATGAAAG+AGG 0.575891 4.1:+19807084 MS.gene028458:CDS
GGTTATAAGCACGAAGCTTG+TGG 0.577439 4.1:-19810344 None:intergenic
ATCTTCGAGGACATGAAGGA+AGG 0.578424 4.1:+19810307 MS.gene028458:CDS
GCTGCGTTGACCTCTGGAGG+AGG 0.578530 4.1:+19806659 MS.gene028458:CDS
GATGGGTCACATGTATGGCT+TGG 0.579447 4.1:+19810807 MS.gene028458:CDS
CATACCGCATTGCGACATGA+AGG 0.581456 4.1:-19806626 None:intergenic
ACCTCACACAGAACTGCCAC+AGG 0.581651 4.1:-19807797 None:intergenic
TACAGCATTCACTGTGACAG+TGG 0.582981 4.1:+19807171 MS.gene028458:CDS
TGTGAGGTTGTAGATGATGA+TGG 0.585772 4.1:+19807812 MS.gene028458:CDS
CTTCGAGGACATGAAGGAAG+GGG 0.588755 4.1:+19810309 MS.gene028458:CDS
AAAGCTGCGTTGACCTCTGG+AGG 0.591046 4.1:+19806656 MS.gene028458:CDS
CTGTCACAGTGAATGCTGTA+CGG 0.591136 4.1:-19807168 None:intergenic
ACTTGCTGGTTTGGATCCTG+TGG 0.591421 4.1:+19807781 MS.gene028458:CDS
TAACCTACAGGATGAGGGAA+GGG 0.594297 4.1:+19810362 MS.gene028458:CDS
GATACAGCTCTAACAGGCAG+TGG 0.594402 4.1:+19806758 MS.gene028458:CDS
GGTGTGTTGGTATATCTTCG+AGG 0.595300 4.1:+19810294 MS.gene028458:CDS
GATAAACTAGTGGAACGTGC+TGG 0.595479 4.1:+19808851 MS.gene028458:CDS
AAGGAAGAGAGATAAACTAG+TGG 0.595527 4.1:+19808841 MS.gene028458:CDS
GCTATTGAAGACATTCGGAA+TGG 0.596453 4.1:+19806848 MS.gene028458:CDS
TGAAGACATTCGGAATGGAA+AGG 0.600427 4.1:+19806853 MS.gene028458:CDS
GCTTATAACCTACAGGATGA+GGG 0.601860 4.1:+19810357 MS.gene028458:CDS
TATTTAACAGGGTGACATTG+GGG 0.607649 4.1:+19810146 MS.gene028458:intron
TATCCCTTCCCTCATCCTGT+AGG 0.610379 4.1:-19810365 None:intergenic
GTACACTCAGAGTGTCTCAC+AGG 0.612117 4.1:+19810192 MS.gene028458:CDS
ATCCTGAGCCGACACACCTG+TGG 0.612282 4.1:-19807612 None:intergenic
GTATATCTTCGAGGACATGA+AGG 0.613709 4.1:+19810303 MS.gene028458:CDS
ATACCGCATTGCGACATGAA+GGG 0.616657 4.1:-19806625 None:intergenic
TCCTGTGGCAGTTCTGTGTG+AGG 0.618636 4.1:+19807796 MS.gene028458:CDS
CTGCACTAATACCAACAATG+TGG 0.619531 4.1:+19808876 MS.gene028458:CDS
AAGCTTAGGTAATCTAGCCA+TGG 0.622161 4.1:-19807837 None:intergenic
ATAACCTACAGGATGAGGGA+AGG 0.623311 4.1:+19810361 MS.gene028458:CDS
TGGATGTGATGTTCTTGTGA+GGG 0.626484 4.1:+19810170 MS.gene028458:CDS
TTCCCGCTAAAATACAGGGA+AGG 0.631313 4.1:+19807707 MS.gene028458:CDS
TGGTACCACCACAGGTGTGT+CGG 0.632234 4.1:+19807604 MS.gene028458:CDS
TGTAGATGATGATGGTTCCA+TGG 0.633135 4.1:+19807820 MS.gene028458:CDS
CCGCTAAAATACAGGGAAGG+TGG 0.634097 4.1:+19807710 MS.gene028458:CDS
CCGTCTATGATTCATGTGCG+TGG 0.635896 4.1:+19806566 None:intergenic
CTGAGCCGACACACCTGTGG+TGG 0.636032 4.1:-19807609 None:intergenic
AGCACAGTTGGCAACACCTG+AGG 0.640668 4.1:+19807027 MS.gene028458:CDS
CACTAATACCAACAATGTGG+GGG 0.642333 4.1:+19808879 MS.gene028458:CDS
TGGGATGGAGCATATTGCGA+TGG 0.648423 4.1:+19808937 MS.gene028458:CDS
GACGAGGACAGAGAAAACGA+AGG 0.678938 4.1:+19806989 MS.gene028458:CDS
GGATACTGTAGAAGCCAATG+AGG 0.679133 4.1:+19810383 MS.gene028458:CDS
GCGGGAAAATATGGCCTGGG+CGG 0.682425 4.1:-19807691 None:intergenic
GGTAGTGGTTGTAGATGACG+AGG 0.685375 4.1:+19806973 MS.gene028458:CDS
TGAATCAGCACAGCTTAATG+CGG 0.689935 4.1:+19806712 MS.gene028458:CDS
GGATGCAAGGGCCAAAACTG+TGG 0.696804 4.1:-19807642 None:intergenic
CGGTAGCGCTTGGAACACTG+GGG 0.714496 4.1:+19806732 MS.gene028458:CDS
GGATCTGCCAGGTGTGACTG+CGG 0.722494 4.1:+19810225 MS.gene028458:CDS
ATTCCCTTCATGTCGCAATG+CGG 0.734754 4.1:+19806622 MS.gene028458:CDS
GGTAGCGCTTGGAACACTGG+GGG 0.737992 4.1:+19806733 MS.gene028458:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATATATGATTAAAAAAAA+AGG - chr4.1:19809169-19809188 None:intergenic 10.0%
!! TTTAATAAAATATAACTTTG+TGG + chr4.1:19807519-19807538 MS.gene028458:intron 10.0%
!! AAAAAAAACTAAAGAAAGTA+TGG - chr4.1:19809276-19809295 None:intergenic 15.0%
!! TCTATATTGAACTATATATA+TGG + chr4.1:19808980-19808999 MS.gene028458:intron 15.0%
!!! ATTCATTTTGAAAAAATTCA+GGG - chr4.1:19809694-19809713 None:intergenic 15.0%
!!! TAACTTTGATTTTAACTAAA+TGG + chr4.1:19809034-19809053 MS.gene028458:intron 15.0%
!!! TATTCATTTTGAAAAAATTC+AGG - chr4.1:19809695-19809714 None:intergenic 15.0%
!!! TCTCTTTATTTGTATATAAA+GGG + chr4.1:19808082-19808101 MS.gene028458:intron 15.0%
!!! TTCTCTTTATTTGTATATAA+AGG + chr4.1:19808081-19808100 MS.gene028458:intron 15.0%
!! AAAATGAATAGAGAAGAAAA+AGG + chr4.1:19809705-19809724 MS.gene028458:intron 20.0%
!! AACTAGAAATTCAATCAATT+TGG + chr4.1:19808457-19808476 MS.gene028458:intron 20.0%
!! AATGCAAAAATGTTGAAAAA+AGG - chr4.1:19809991-19810010 None:intergenic 20.0%
!! ATATAAAGACAAAATAACCA+CGG - chr4.1:19808701-19808720 None:intergenic 20.0%
!! ATGCAAAAATGTTGAAAAAA+GGG - chr4.1:19809990-19810009 None:intergenic 20.0%
!!! AATTTTTGAAAGACAAATCA+CGG - chr4.1:19808427-19808446 None:intergenic 20.0%
!!! ATTTTACTGTATTCAATTCA+TGG + chr4.1:19810508-19810527 MS.gene028458:intron 20.0%
!!! GGTATTCTATATAAAAGTTT+TGG + chr4.1:19806897-19806916 MS.gene028458:intron 20.0%
!!! TAGGATTTCAATTTTTGTAA+TGG - chr4.1:19808601-19808620 None:intergenic 20.0%
! AAAAATTTAACTGCGCTTAA+AGG - chr4.1:19808678-19808697 None:intergenic 25.0%
! AAAAGAAACAAAAAGAATCC+AGG - chr4.1:19808773-19808792 None:intergenic 25.0%
! AAATAATAAAAAGCTCACGA+GGG + chr4.1:19808043-19808062 MS.gene028458:intron 25.0%
! AAATTAGCTAAAGATGAATC+AGG - chr4.1:19808745-19808764 None:intergenic 25.0%
! AATTGTAATTGCAGATATTG+AGG + chr4.1:19810632-19810651 MS.gene028458:intron 25.0%
! ACAACAAAAATTGCATACAA+TGG - chr4.1:19808338-19808357 None:intergenic 25.0%
! AGATGACAATTAAGGAAAAT+AGG - chr4.1:19808257-19808276 None:intergenic 25.0%
! ATTGAAAGGTTCAAGATAAT+TGG - chr4.1:19810062-19810081 None:intergenic 25.0%
! ATTGTAATTGCAGATATTGA+GGG + chr4.1:19810633-19810652 MS.gene028458:intron 25.0%
! GAAGAAATAGATGACAATTA+AGG - chr4.1:19808265-19808284 None:intergenic 25.0%
! GAATTTAACAGCAAATTGAA+TGG + chr4.1:19810829-19810848 MS.gene028458:CDS 25.0%
! GATGACAATTAAGGAAAATA+GGG - chr4.1:19808256-19808275 None:intergenic 25.0%
! GTACTAATGTCAGTTAATAA+CGG - chr4.1:19806946-19806965 None:intergenic 25.0%
! TAAATAATAAAAAGCTCACG+AGG + chr4.1:19808042-19808061 MS.gene028458:intron 25.0%
! TAATGGAAGATAAACAAGAT+AGG - chr4.1:19808620-19808639 None:intergenic 25.0%
! TACATGATTATTAAGTTCAC+TGG + chr4.1:19810536-19810555 MS.gene028458:intron 25.0%
! TATTAGCAAGTTTCTCATTA+GGG + chr4.1:19808018-19808037 MS.gene028458:intron 25.0%
! TCATCAAACAAGTTATGTAT+TGG - chr4.1:19809390-19809409 None:intergenic 25.0%
! TGCAAAAATGTTGAAAAAAG+GGG - chr4.1:19809989-19810008 None:intergenic 25.0%
! TTATTAGCAAGTTTCTCATT+AGG + chr4.1:19808017-19808036 MS.gene028458:intron 25.0%
!! AACATAGAACTAGATGTTTT+AGG + chr4.1:19810576-19810595 MS.gene028458:intron 25.0%
!! AATTCTCATTGACTGAAATT+GGG + chr4.1:19809883-19809902 MS.gene028458:intron 25.0%
!! ACTTATCAATGCAATTTTGT+AGG + chr4.1:19807571-19807590 MS.gene028458:intron 25.0%
!! GTAAGTAGTTCGATATTTTA+AGG - chr4.1:19809484-19809503 None:intergenic 25.0%
!! TGGACATTTCTTATTTAACA+GGG + chr4.1:19810135-19810154 MS.gene028458:intron 25.0%
!! TTGGACATTTCTTATTTAAC+AGG + chr4.1:19810134-19810153 MS.gene028458:intron 25.0%
!! TTTCAACATTTTTGCATTCA+AGG + chr4.1:19809993-19810012 MS.gene028458:intron 25.0%
!!! AGGGTTTTTAAGTAATTAGT+AGG + chr4.1:19807972-19807991 MS.gene028458:intron 25.0%
!!! ATTTATTTTTTTGACAGCCA+CGG - chr4.1:19809214-19809233 None:intergenic 25.0%
!!! GATTCTTTTTGTTTCTTTTC+TGG + chr4.1:19808774-19808793 MS.gene028458:intron 25.0%
!!! GTTTTTAAGTAATTAGTAGG+TGG + chr4.1:19807975-19807994 MS.gene028458:intron 25.0%
!!! TATCTATTGCTGACTTAATA+AGG + chr4.1:19807894-19807913 MS.gene028458:CDS 25.0%
!!! TCAATCAATTTGGTTTTTTG+TGG + chr4.1:19808467-19808486 MS.gene028458:intron 25.0%
!!! TGTTTTAGATGATGTAAGAA+TGG - chr4.1:19807265-19807284 None:intergenic 25.0%
!!! TTGTATGCAATTTTTGTTGT+CGG + chr4.1:19808338-19808357 MS.gene028458:intron 25.0%
AAACGAAGGAGATCTAATAA+TGG + chr4.1:19807003-19807022 MS.gene028458:CDS 30.0%
AAACTGATCTTGTCAGTTAA+AGG - chr4.1:19809928-19809947 None:intergenic 30.0%
AAATGAAAACAGGAGATACT+TGG + chr4.1:19810768-19810787 MS.gene028458:CDS 30.0%
ACTGGAATCATCAATATTAC+TGG - chr4.1:19810860-19810879 None:intergenic 30.0%
ACTTAAAAACCCTCTCATAT+TGG - chr4.1:19807965-19807984 None:intergenic 30.0%
AGACCTAAAAAATGAAGATC+TGG + chr4.1:19806682-19806701 MS.gene028458:CDS 30.0%
AGGTAAGGAACAAAAAATAG+AGG - chr4.1:19808725-19808744 None:intergenic 30.0%
AGTAAATGTCTGTTACATAC+TGG - chr4.1:19807421-19807440 None:intergenic 30.0%
AGTAATGACAATAGTAGTAG+AGG - chr4.1:19808221-19808240 None:intergenic 30.0%
AGTTTGTATAAGCATGAAAG+AGG + chr4.1:19807084-19807103 MS.gene028458:CDS 30.0%
ATAAAAATTGAGTCACATCG+AGG + chr4.1:19809240-19809259 MS.gene028458:intron 30.0%
ATCATATTGCTCTACCATAT+TGG - chr4.1:19809082-19809101 None:intergenic 30.0%
CACTTATCACAAATGAAAAC+AGG + chr4.1:19810758-19810777 MS.gene028458:CDS 30.0%
CTAAAAAATGAAGATCTGGT+TGG + chr4.1:19806686-19806705 MS.gene028458:CDS 30.0%
CTTAAAAACCCTCTCATATT+GGG - chr4.1:19807964-19807983 None:intergenic 30.0%
GATCTAGTCATCTTTCTATT+TGG + chr4.1:19809841-19809860 MS.gene028458:intron 30.0%
GTAAATGTCTGTTACATACT+GGG - chr4.1:19807420-19807439 None:intergenic 30.0%
GTAATGACAATAGTAGTAGA+GGG - chr4.1:19808220-19808239 None:intergenic 30.0%
TAGCTTCTATTCCAAATGTA+GGG - chr4.1:19809416-19809435 None:intergenic 30.0%
TTAGCTTCTATTCCAAATGT+AGG - chr4.1:19809417-19809436 None:intergenic 30.0%
TTATTTAACAGGGTGACATT+GGG + chr4.1:19810145-19810164 MS.gene028458:intron 30.0%
! ATATTTTCCCGCTAAAATAC+AGG + chr4.1:19807702-19807721 MS.gene028458:CDS 30.0%
! ATTTTGTAGGATGCCAAATA+TGG + chr4.1:19807584-19807603 MS.gene028458:intron 30.0%
! CTTTAGCTAATTTTTCTTCC+TGG + chr4.1:19808752-19808771 MS.gene028458:intron 30.0%
! GAATTCTCATTGACTGAAAT+TGG + chr4.1:19809882-19809901 MS.gene028458:intron 30.0%
! GTTAATAACGGAAATCTAAG+TGG - chr4.1:19806934-19806953 None:intergenic 30.0%
! TATTTTCCCGCTAAAATACA+GGG + chr4.1:19807703-19807722 MS.gene028458:CDS 30.0%
! TTTTGAATCTTTGGATGCAA+GGG - chr4.1:19807657-19807676 None:intergenic 30.0%
!! AGAATTTCAAGTTAACTCAC+GGG - chr4.1:19809573-19809592 None:intergenic 30.0%
!! CAGAATTTCAAGTTAACTCA+CGG - chr4.1:19809574-19809593 None:intergenic 30.0%
!! TGATAGCAACCTCTAAAATT+AGG - chr4.1:19808501-19808520 None:intergenic 30.0%
!!! ATCACTTGGTTTTGAATCTT+TGG - chr4.1:19807666-19807685 None:intergenic 30.0%
!!! CAACCAGATCTTCATTTTTT+AGG - chr4.1:19806688-19806707 None:intergenic 30.0%
!!! GTTATAGGTCACTTTTAGAT+GGG + chr4.1:19808918-19808937 MS.gene028458:CDS 30.0%
!!! TGTATTTTAGCGGGAAAATA+TGG - chr4.1:19807703-19807722 None:intergenic 30.0%
!!! TGTTATAGGTCACTTTTAGA+TGG + chr4.1:19808917-19808936 MS.gene028458:CDS 30.0%
AACAATCCGGCAAAATATGT+TGG + chr4.1:19810688-19810707 MS.gene028458:CDS 35.0%
AAGACTTCACTCAATCTTGT+GGG - chr4.1:19809808-19809827 None:intergenic 35.0%
AAGCTAAGCTATTGGCATAA+AGG + chr4.1:19809430-19809449 MS.gene028458:intron 35.0%
AAGGAAGAGAGATAAACTAG+TGG + chr4.1:19808841-19808860 MS.gene028458:CDS 35.0%
AATTAGTAGGTGGCTAAGTA+GGG + chr4.1:19807985-19808004 MS.gene028458:intron 35.0%
ACAATCCGGCAAAATATGTT+GGG + chr4.1:19810689-19810708 MS.gene028458:CDS 35.0%
ACACAAAGTTTACCTCTTAG+TGG - chr4.1:19809767-19809786 None:intergenic 35.0%
ACTGACATTAGTACTTCAGA+TGG + chr4.1:19806952-19806971 MS.gene028458:intron 35.0%
AGCTAAAGATGAATCAGGTA+AGG - chr4.1:19808740-19808759 None:intergenic 35.0%
AGTCCCAAAAAATCTCAGAT+AGG + chr4.1:19809532-19809551 MS.gene028458:intron 35.0%
ATTAGTACTTCAGATGGTAG+TGG + chr4.1:19806958-19806977 MS.gene028458:intron 35.0%
ATTATTATTACACCCTCAGC+AGG - chr4.1:19809308-19809327 None:intergenic 35.0%
ATTTACTCACCTTCATGTGA+TGG + chr4.1:19807287-19807306 MS.gene028458:intron 35.0%
CATTCACAGCTAACTGTTAT+AGG + chr4.1:19808903-19808922 MS.gene028458:CDS 35.0%
CTATAACAGTTAGCTGTGAA+TGG - chr4.1:19808905-19808924 None:intergenic 35.0%
CTTATTTAACAGGGTGACAT+TGG + chr4.1:19810144-19810163 MS.gene028458:intron 35.0%
GAAATGTCCAACCATAACAA+AGG - chr4.1:19810125-19810144 None:intergenic 35.0%
GAAGCTAATGACAAACAATC+CGG + chr4.1:19810675-19810694 MS.gene028458:CDS 35.0%
GAGGTAAACTTTGTGTGTTT+AGG + chr4.1:19809771-19809790 MS.gene028458:intron 35.0%
GCATAAGAGAGATACCAATA+TGG + chr4.1:19809065-19809084 MS.gene028458:intron 35.0%
GTAAAAAGAACCTTGATCCA+GGG + chr4.1:19809727-19809746 MS.gene028458:intron 35.0%
GTCCCAAAAAATCTCAGATA+GGG + chr4.1:19809533-19809552 MS.gene028458:intron 35.0%
GTTCTGATCCACAAATACTT+TGG + chr4.1:19809620-19809639 MS.gene028458:intron 35.0%
TAAAGTTGACCATCACATGA+AGG - chr4.1:19807299-19807318 None:intergenic 35.0%
TAATTAGTAGGTGGCTAAGT+AGG + chr4.1:19807984-19808003 MS.gene028458:intron 35.0%
TATTTAACAGGGTGACATTG+GGG + chr4.1:19810146-19810165 MS.gene028458:intron 35.0%
TCAATGAGAATTCCATTCCT+GGG - chr4.1:19809875-19809894 None:intergenic 35.0%
TCATGTGATGGTCAACTTTA+GGG + chr4.1:19807299-19807318 MS.gene028458:intron 35.0%
TCCCAAAAAATCTCAGATAG+GGG + chr4.1:19809534-19809553 MS.gene028458:intron 35.0%
TGACAGTGGTATGTACAATT+TGG + chr4.1:19807185-19807204 MS.gene028458:intron 35.0%
TGCACTAATACCAACAATGT+GGG + chr4.1:19808877-19808896 MS.gene028458:CDS 35.0%
TGCGAAATACGTTGTATGTT+AGG + chr4.1:19807937-19807956 MS.gene028458:intron 35.0%
TGGAATAGAAGCTAAGCTAT+TGG + chr4.1:19809422-19809441 MS.gene028458:intron 35.0%
TGTTTAATAACTGCAGTGCA+AGG - chr4.1:19808647-19808666 None:intergenic 35.0%
TTCATGTGATGGTCAACTTT+AGG + chr4.1:19807298-19807317 MS.gene028458:intron 35.0%
TTTGATGAAGTCCCTACATT+TGG + chr4.1:19809402-19809421 MS.gene028458:intron 35.0%
! AATAACGGAAATCTAAGTGG+AGG - chr4.1:19806931-19806950 None:intergenic 35.0%
! ATGGAAGCAAAACCTTTTGT+TGG - chr4.1:19806821-19806840 None:intergenic 35.0%
! ATGGCTTTTATTGTGAAGCA+CGG + chr4.1:19807052-19807071 MS.gene028458:CDS 35.0%
! TGACGGAATATGTTTCTGTT+AGG + chr4.1:19808127-19808146 MS.gene028458:intron 35.0%
! TGTTGAAGCCAAAGTATTTG+TGG - chr4.1:19809631-19809650 None:intergenic 35.0%
!! AACTAGATGTTTTAGGCAGT+TGG + chr4.1:19810583-19810602 MS.gene028458:intron 35.0%
!! GTTTTGAATCTTTGGATGCA+AGG - chr4.1:19807658-19807677 None:intergenic 35.0%
!! TGTTACTGTTGGTTTATTGC+AGG + chr4.1:19808297-19808316 MS.gene028458:intron 35.0%
!!! ATTTTAAGGTGCCAATCCTA+GGG - chr4.1:19809470-19809489 None:intergenic 35.0%
!!! TATTTTAAGGTGCCAATCCT+AGG - chr4.1:19809471-19809490 None:intergenic 35.0%
AAGCTTAGGTAATCTAGCCA+TGG - chr4.1:19807840-19807859 None:intergenic 40.0%
ACAATAAAAGCCATAGCCTC+AGG - chr4.1:19807046-19807065 None:intergenic 40.0%
AGAAAGATGACTAGATCCCT+GGG - chr4.1:19809838-19809857 None:intergenic 40.0%
AGCCTGCAGGATTTGAAAAT+CGG + chr4.1:19810027-19810046 MS.gene028458:intron 40.0%
ATGACATACTTCCCTAGGAT+TGG + chr4.1:19809456-19809475 MS.gene028458:intron 40.0%
ATGATATAGAATGCCTGAGC+AGG + chr4.1:19809657-19809676 MS.gene028458:intron 40.0%
ATGGATGTGATGTTCTTGTG+AGG + chr4.1:19810169-19810188 MS.gene028458:CDS 40.0%
ATGTTAGGACCCAATATGAG+AGG + chr4.1:19807952-19807971 MS.gene028458:intron 40.0%
ATTGCAGATATTGAGGGACT+TGG + chr4.1:19810639-19810658 MS.gene028458:intron 40.0%
CAAGACTTCACTCAATCTTG+TGG - chr4.1:19809809-19809828 None:intergenic 40.0%
CACAAATAGGATCCACTAAG+AGG + chr4.1:19809752-19809771 MS.gene028458:intron 40.0%
CACAAGATTGAGTGAAGTCT+TGG + chr4.1:19809807-19809826 MS.gene028458:intron 40.0%
CACTAATACCAACAATGTGG+GGG + chr4.1:19808879-19808898 MS.gene028458:CDS 40.0%
CATACAATGGTAGAACCCAA+TGG - chr4.1:19808325-19808344 None:intergenic 40.0%
CTCTCTGGACTTCAAGAATT+GGG - chr4.1:19809348-19809367 None:intergenic 40.0%
CTGAGGCTATTGAAGACATT+CGG + chr4.1:19806843-19806862 MS.gene028458:CDS 40.0%
CTGCACTAATACCAACAATG+TGG + chr4.1:19808876-19808895 MS.gene028458:CDS 40.0%
CTTGTGAGTTGTAGGTTTGA+CGG + chr4.1:19808110-19808129 MS.gene028458:intron 40.0%
GAAACCAAACGTGTGAAGAT+GGG + chr4.1:19810790-19810809 MS.gene028458:CDS 40.0%
GAGATTAACACCTATTGGTC+TGG + chr4.1:19808809-19808828 MS.gene028458:intron 40.0%
GAGATTAGAGCTTCCTTTGA+TGG + chr4.1:19807117-19807136 MS.gene028458:CDS 40.0%
GATTCAGACAGTCCAACAAA+AGG + chr4.1:19806806-19806825 MS.gene028458:CDS 40.0%
GCAAAATATGTTGGGCTCAA+AGG + chr4.1:19810697-19810716 MS.gene028458:CDS 40.0%
GCACTAATACCAACAATGTG+GGG + chr4.1:19808878-19808897 MS.gene028458:CDS 40.0%
GCAGTTGGATTCACTCATAA+TGG + chr4.1:19810598-19810617 MS.gene028458:intron 40.0%
GCTATTGAAGACATTCGGAA+TGG + chr4.1:19806848-19806867 MS.gene028458:CDS 40.0%
GCTCAGATTTGGCATTTGTT+CGG + chr4.1:19806588-19806607 MS.gene028458:CDS 40.0%
GCTTATAACCTACAGGATGA+GGG + chr4.1:19810357-19810376 MS.gene028458:CDS 40.0%
GGAAAATGACATACTTCCCT+AGG + chr4.1:19809451-19809470 MS.gene028458:intron 40.0%
GGGAAATTCTTGTGAGTTGT+AGG + chr4.1:19808102-19808121 MS.gene028458:intron 40.0%
GGTAAAAAGAACCTTGATCC+AGG + chr4.1:19809726-19809745 MS.gene028458:intron 40.0%
GGTTTATTGCAGGATCCATT+GGG + chr4.1:19808307-19808326 MS.gene028458:intron 40.0%
GTATATCTTCGAGGACATGA+AGG + chr4.1:19810303-19810322 MS.gene028458:CDS 40.0%
GTCAATGAGAATTCCATTCC+TGG - chr4.1:19809876-19809895 None:intergenic 40.0%
TAGAAAGATGACTAGATCCC+TGG - chr4.1:19809839-19809858 None:intergenic 40.0%
TAGGTGTTAATCTCCTCGAT+AGG - chr4.1:19808803-19808822 None:intergenic 40.0%
TATGTTGGGCTCAAAGGTTA+TGG + chr4.1:19810703-19810722 MS.gene028458:CDS 40.0%
TCGAGGAGATTAACACCTAT+TGG + chr4.1:19808804-19808823 MS.gene028458:intron 40.0%
TCTAATAATGGCAGCACAGT+TGG + chr4.1:19807015-19807034 MS.gene028458:CDS 40.0%
TCTCTCTGGACTTCAAGAAT+TGG - chr4.1:19809349-19809368 None:intergenic 40.0%
TCTTGCAATGCAACAGATTG+AGG + chr4.1:19810260-19810279 MS.gene028458:CDS 40.0%
TGAAGACATTCGGAATGGAA+AGG + chr4.1:19806853-19806872 MS.gene028458:CDS 40.0%
TGAATCAGCACAGCTTAATG+CGG + chr4.1:19806712-19806731 MS.gene028458:CDS 40.0%
TGCTTATAACCTACAGGATG+AGG + chr4.1:19810356-19810375 MS.gene028458:CDS 40.0%
TGGATGTGATGTTCTTGTGA+GGG + chr4.1:19810170-19810189 MS.gene028458:CDS 40.0%
TGGTTTATTGCAGGATCCAT+TGG + chr4.1:19808306-19808325 MS.gene028458:intron 40.0%
TGTCTCACAGGAGACATATT+TGG + chr4.1:19810204-19810223 MS.gene028458:CDS 40.0%
TGTGAGGTTGTAGATGATGA+TGG + chr4.1:19807812-19807831 MS.gene028458:CDS 40.0%
TGTTAGGACCCAATATGAGA+GGG + chr4.1:19807953-19807972 MS.gene028458:intron 40.0%
TTGCAGATATTGAGGGACTT+GGG + chr4.1:19810640-19810659 MS.gene028458:intron 40.0%
TTTATTGTGAAGCACGGAAC+TGG + chr4.1:19807058-19807077 MS.gene028458:CDS 40.0%
! AATTTTCACGCTCTGCAAAC+TGG - chr4.1:19807865-19807884 None:intergenic 40.0%
! AGCGCAGTTAAATTTTTCCG+TGG + chr4.1:19808681-19808700 MS.gene028458:intron 40.0%
! ATGGTTTGTCCATTTCAGGT+AGG + chr4.1:19810722-19810741 MS.gene028458:CDS 40.0%
! ATTTTGTTCCTACGCAACTC+AGG + chr4.1:19807547-19807566 MS.gene028458:intron 40.0%
! CACTTAGCCTTTGTTATGGT+TGG + chr4.1:19810115-19810134 MS.gene028458:intron 40.0%
! CTCTTAGTGGATCCTATTTG+TGG - chr4.1:19809754-19809773 None:intergenic 40.0%
! CTGCAGTGCAAGGTATTTAA+TGG - chr4.1:19808637-19808656 None:intergenic 40.0%
! GGTTATGGTTTGTCCATTTC+AGG + chr4.1:19810718-19810737 MS.gene028458:CDS 40.0%
! GTGCTTGCTCCTAATTTTAG+AGG + chr4.1:19808489-19808508 MS.gene028458:intron 40.0%
! TCGACACTTAGCCTTTGTTA+TGG + chr4.1:19810111-19810130 MS.gene028458:intron 40.0%
! TGTTTGTGCTGTGTTACTGT+TGG + chr4.1:19808286-19808305 MS.gene028458:intron 40.0%
! TTCCTTTGATGGTCAACAGT+CGG + chr4.1:19807128-19807147 MS.gene028458:CDS 40.0%
! TTGAGCCCAACATATTTTGC+CGG - chr4.1:19810697-19810716 None:intergenic 40.0%
! TTGTGAGTTGAAACTCTCTC+TGG - chr4.1:19809363-19809382 None:intergenic 40.0%
! TTTTATATCCTGCCTGCTGA+GGG + chr4.1:19809293-19809312 MS.gene028458:intron 40.0%
! TTTTTATATCCTGCCTGCTG+AGG + chr4.1:19809292-19809311 MS.gene028458:intron 40.0%
!! TGTAGATGATGATGGTTCCA+TGG + chr4.1:19807820-19807839 MS.gene028458:CDS 40.0%
!!! GCCCCTATCTGAGATTTTTT+GGG - chr4.1:19809538-19809557 None:intergenic 40.0%
!!! GGTGCGTGCATTTTTTTATC+TGG + chr4.1:19807206-19807225 MS.gene028458:intron 40.0%
!!! TAGGTCACTTTTAGATGGGA+TGG + chr4.1:19808922-19808941 MS.gene028458:CDS 40.0%
!!! TCTTTTCTGGTTACCTATCG+AGG + chr4.1:19808787-19808806 MS.gene028458:intron 40.0%
!!! TTTTTTGGGACTTCTAGCCT+TGG - chr4.1:19809524-19809543 None:intergenic 40.0%
AACCTGTTGTTACATTGCCG+TGG + chr4.1:19809194-19809213 MS.gene028458:intron 45.0%
AACTCACGGGAAAAAGACGA+AGG - chr4.1:19809560-19809579 None:intergenic 45.0%
AAGCATGAAAGAGGAAGACC+TGG + chr4.1:19807093-19807112 MS.gene028458:CDS 45.0%
ACCTGTGGTGGTACCATATT+TGG - chr4.1:19807600-19807619 None:intergenic 45.0%
ATAACCTACAGGATGAGGGA+AGG + chr4.1:19810361-19810380 MS.gene028458:CDS 45.0%
ATACCGCATTGCGACATGAA+GGG - chr4.1:19806628-19806647 None:intergenic 45.0%
ATCTTCGAGGACATGAAGGA+AGG + chr4.1:19810307-19810326 MS.gene028458:CDS 45.0%
ATTCCCTTCATGTCGCAATG+CGG + chr4.1:19806622-19806641 MS.gene028458:CDS 45.0%
ATTCTGCAGCATTGTCCTGA+TGG + chr4.1:19809588-19809607 MS.gene028458:intron 45.0%
CAATCTTGTGGGCATTAGAG+TGG - chr4.1:19809797-19809816 None:intergenic 45.0%
CAATGCGATCCTACCTGAAA+TGG - chr4.1:19810734-19810753 None:intergenic 45.0%
CGAATGTCTTCAATAGCCTC+AGG - chr4.1:19806845-19806864 None:intergenic 45.0%
CTGTCACAGTGAATGCTGTA+CGG - chr4.1:19807171-19807190 None:intergenic 45.0%
GACATTCGGAATGGAAAGGT+CGG + chr4.1:19806857-19806876 MS.gene028458:intron 45.0%
GAGACATATTTGGATCTGCC+AGG + chr4.1:19810214-19810233 MS.gene028458:CDS 45.0%
GATAAACTAGTGGAACGTGC+TGG + chr4.1:19808851-19808870 MS.gene028458:CDS 45.0%
GATAAGTTCCTGAGTTGCGT+AGG - chr4.1:19807558-19807577 None:intergenic 45.0%
GCTTCGTGCTTATAACCTAC+AGG + chr4.1:19810350-19810369 MS.gene028458:CDS 45.0%
GGAAACCAAACGTGTGAAGA+TGG + chr4.1:19810789-19810808 MS.gene028458:CDS 45.0%
GGAGCATATTGCGATGGTAA+AGG + chr4.1:19808943-19808962 MS.gene028458:CDS 45.0%
GGATACTGTAGAAGCCAATG+AGG + chr4.1:19810383-19810402 MS.gene028458:CDS 45.0%
GGTTATAAGCACGAAGCTTG+TGG - chr4.1:19810347-19810366 None:intergenic 45.0%
GTAGAAGCCAATGAGGAGTT+GGG + chr4.1:19810390-19810409 MS.gene028458:CDS 45.0%
GTCTTCAATAGCCTCAGGTA+TGG - chr4.1:19806840-19806859 None:intergenic 45.0%
GTGAAGATGGGTCACATGTA+TGG + chr4.1:19810802-19810821 MS.gene028458:CDS 45.0%
GTGTGACTGCGGAAATCAAT+TGG + chr4.1:19810236-19810255 MS.gene028458:CDS 45.0%
GTTGATCTTGCAGTACTTGC+TGG + chr4.1:19807767-19807786 MS.gene028458:CDS 45.0%
GTTGTGTCGGAGCTTAACTT+TGG + chr4.1:19808179-19808198 MS.gene028458:intron 45.0%
GTTTCTGTTAGGACCAGAGT+AGG + chr4.1:19808138-19808157 MS.gene028458:intron 45.0%
TAACCTACAGGATGAGGGAA+GGG + chr4.1:19810362-19810381 MS.gene028458:CDS 45.0%
TACAGCATTCACTGTGACAG+TGG + chr4.1:19807171-19807190 MS.gene028458:CDS 45.0%
TATTTGTGGACCCTGGATCA+AGG - chr4.1:19809740-19809759 None:intergenic 45.0%
TCTATACCTGCCAGACCAAT+AGG - chr4.1:19808822-19808841 None:intergenic 45.0%
TCTATTTGGATGTGTAGCCC+AGG + chr4.1:19809855-19809874 MS.gene028458:intron 45.0%
TCTGAGTCAGTGAGTTGTGT+CGG + chr4.1:19808166-19808185 MS.gene028458:intron 45.0%
TCTTCGAGGACATGAAGGAA+GGG + chr4.1:19810308-19810327 MS.gene028458:CDS 45.0%
TGTAGAAGCCAATGAGGAGT+TGG + chr4.1:19810389-19810408 MS.gene028458:CDS 45.0%
TTAGCGGGAAAATATGGCCT+GGG - chr4.1:19807697-19807716 None:intergenic 45.0%
TTCCCGCTAAAATACAGGGA+AGG + chr4.1:19807707-19807726 MS.gene028458:CDS 45.0%
TTGATCCAGGGTCCACAAAT+AGG + chr4.1:19809739-19809758 MS.gene028458:intron 45.0%
TTTAGCGGGAAAATATGGCC+TGG - chr4.1:19807698-19807717 None:intergenic 45.0%
! AAGGAAGCTCTAATCTCTCC+AGG - chr4.1:19807114-19807133 None:intergenic 45.0%
! AGGTTTTGCTTCCATACCTG+AGG + chr4.1:19806826-19806845 MS.gene028458:CDS 45.0%
! ATTGGTCTGGCAGGTATAGA+AGG + chr4.1:19808822-19808841 MS.gene028458:intron 45.0%
! GACTCAAGGGAGTATGGAAT+TGG + chr4.1:19810423-19810442 MS.gene028458:CDS 45.0%
! GGCATTTTCTATAAGCCTGC+AGG + chr4.1:19810014-19810033 MS.gene028458:intron 45.0%
! GGTGTGTTGGTATATCTTCG+AGG + chr4.1:19810294-19810313 MS.gene028458:CDS 45.0%
! TCCTTTGATGGTCAACAGTC+GGG + chr4.1:19807129-19807148 MS.gene028458:CDS 45.0%
! TCTTGCAGTACTTGCTGGTT+TGG + chr4.1:19807772-19807791 MS.gene028458:CDS 45.0%
! TTAACACCTATTGGTCTGGC+AGG + chr4.1:19808813-19808832 MS.gene028458:intron 45.0%
!! CCACCTTCCCTGTATTTTAG+CGG - chr4.1:19807713-19807732 None:intergenic 45.0%
!! GAAGGAAGGGGTATTGGATT+GGG + chr4.1:19810321-19810340 MS.gene028458:CDS 45.0%
!! TGAAGGAAGGGGTATTGGAT+TGG + chr4.1:19810320-19810339 MS.gene028458:CDS 45.0%
!!! CACCTTCCCTGTATTTTAGC+GGG - chr4.1:19807712-19807731 None:intergenic 45.0%
!!! GGCCCCTATCTGAGATTTTT+TGG - chr4.1:19809539-19809558 None:intergenic 45.0%
!!! TGCCGATTTTCAAATCCTGC+AGG - chr4.1:19810032-19810051 None:intergenic 45.0%
!!! ATATAAAATTTAAAATTGAA+AGG - chr4.1:19810076-19810095 None:intergenic 5.0%
!!! TTTTTTTTTTTATTTTCTTT+AGG + chr4.1:19809946-19809965 MS.gene028458:intron 5.0%
AAATTGTCTGCCAGCTGCCA+AGG + chr4.1:19809504-19809523 MS.gene028458:intron 50.0%
AGCCACGGCAATGTAACAAC+AGG - chr4.1:19809199-19809218 None:intergenic 50.0%
AGGCAATCCCAACTCCTCAT+TGG - chr4.1:19810400-19810419 None:intergenic 50.0%
ATGCAACAGATTGAGGCTGC+TGG + chr4.1:19810267-19810286 MS.gene028458:CDS 50.0%
ATGCCTACACAAGTGCAGCT+AGG - chr4.1:19807340-19807359 None:intergenic 50.0%
CACGGTAGCAGACAACATGA+GGG - chr4.1:19808409-19808428 None:intergenic 50.0%
CAGAACTCTGCAAAGCCATC+AGG - chr4.1:19809606-19809625 None:intergenic 50.0%
CATACCGCATTGCGACATGA+AGG - chr4.1:19806629-19806648 None:intergenic 50.0%
CCATACTCCCTTGAGTCAAC+AGG - chr4.1:19810420-19810439 None:intergenic 50.0%
CCGCTAAAATACAGGGAAGG+TGG + chr4.1:19807710-19807729 MS.gene028458:CDS 50.0%
CTTCGAGGACATGAAGGAAG+GGG + chr4.1:19810309-19810328 MS.gene028458:CDS 50.0%
GACGAGGACAGAGAAAACGA+AGG + chr4.1:19806989-19807008 MS.gene028458:CDS 50.0%
GACTCAGAGGAATCCTACTC+TGG - chr4.1:19808154-19808173 None:intergenic 50.0%
GATGATTCCAGTACTGCTCC+TGG + chr4.1:19810868-19810887 MS.gene028458:CDS 50.0%
GATGGGTCACATGTATGGCT+TGG + chr4.1:19810807-19810826 MS.gene028458:CDS 50.0%
GCCAAATATGGTACCACCAC+AGG + chr4.1:19807596-19807615 MS.gene028458:CDS 50.0%
GGAGTATGGAATTGGTGCAC+AGG + chr4.1:19810431-19810450 MS.gene028458:CDS 50.0%
GGTGGTATCTTGAAGAGAGC+TGG + chr4.1:19807728-19807747 MS.gene028458:CDS 50.0%
GTGACCCATCTTCACACGTT+TGG - chr4.1:19810797-19810816 None:intergenic 50.0%
TAACAGGGTGACATTGGGGA+TGG + chr4.1:19810150-19810169 MS.gene028458:intron 50.0%
TATCCCTTCCCTCATCCTGT+AGG - chr4.1:19810368-19810387 None:intergenic 50.0%
TCACGGTAGCAGACAACATG+AGG - chr4.1:19808410-19808429 None:intergenic 50.0%
TCATGTGCGTGGCTCAGATT+TGG + chr4.1:19806577-19806596 MS.gene028458:CDS 50.0%
TCCCGACTGTTGACCATCAA+AGG - chr4.1:19807133-19807152 None:intergenic 50.0%
TCGGTACTCTGTCTCTCTGT+GGG + chr4.1:19806876-19806895 MS.gene028458:intron 50.0%
TCTGCAAACTGGCGAAGCTT+AGG - chr4.1:19807854-19807873 None:intergenic 50.0%
TGCCTACACAAGTGCAGCTA+GGG - chr4.1:19807339-19807358 None:intergenic 50.0%
TGGATCCTATTTGTGGACCC+TGG - chr4.1:19809747-19809766 None:intergenic 50.0%
TGGGATGGAGCATATTGCGA+TGG + chr4.1:19808937-19808956 MS.gene028458:CDS 50.0%
TTATGTGCCAGGAGCAGTAC+TGG - chr4.1:19810878-19810897 None:intergenic 50.0%
TTATTACACCCTCAGCAGGC+AGG - chr4.1:19809304-19809323 None:intergenic 50.0%
TTGATTTCCGCAGTCACACC+TGG - chr4.1:19810235-19810254 None:intergenic 50.0%
TTGGATGTGTAGCCCAGGAA+TGG + chr4.1:19809860-19809879 MS.gene028458:intron 50.0%
! GATACAGCTCTAACAGGCAG+TGG + chr4.1:19806758-19806777 MS.gene028458:CDS 50.0%
! GGACATGAAGGAAGGGGTAT+TGG + chr4.1:19810315-19810334 MS.gene028458:CDS 50.0%
! GGATAGGGCAACCACAGTTT+TGG + chr4.1:19807631-19807650 MS.gene028458:CDS 50.0%
! GGTAGTGGTTGTAGATGACG+AGG + chr4.1:19806973-19806992 MS.gene028458:CDS 50.0%
! GTACACTCAGAGTGTCTCAC+AGG + chr4.1:19810192-19810211 MS.gene028458:CDS 50.0%
! GTTAAAGCTGCGTTGACCTC+TGG + chr4.1:19806653-19806672 MS.gene028458:CDS 50.0%
!! ACTTGCTGGTTTGGATCCTG+TGG + chr4.1:19807781-19807800 MS.gene028458:CDS 50.0%
!! CCTGTTGACTCAAGGGAGTA+TGG + chr4.1:19810417-19810436 MS.gene028458:CDS 50.0%
!! GACACAACTCACTGACTCAG+AGG - chr4.1:19808167-19808186 None:intergenic 50.0%
!! GGGATTGCCTGTTGACTCAA+GGG + chr4.1:19810410-19810429 MS.gene028458:CDS 50.0%
!! TGGGATTGCCTGTTGACTCA+AGG + chr4.1:19810409-19810428 MS.gene028458:CDS 50.0%
!! TTTTAGGTCTCCTCCTCCAG+AGG - chr4.1:19806672-19806691 None:intergenic 50.0%
ACCTCACACAGAACTGCCAC+AGG - chr4.1:19807800-19807819 None:intergenic 55.0%
AGCACAGTTGGCAACACCTG+AGG + chr4.1:19807027-19807046 MS.gene028458:CDS 55.0%
CAGCTTAATGCGGTAGCGCT+TGG + chr4.1:19806722-19806741 MS.gene028458:CDS 55.0%
CCAAGTGATTTCAACCGCCC+AGG + chr4.1:19807677-19807696 MS.gene028458:CDS 55.0%
CCTGGGCGGTTGAAATCACT+TGG - chr4.1:19807680-19807699 None:intergenic 55.0%
GATGACTAGATCCCTGGGAC+TGG - chr4.1:19809833-19809852 None:intergenic 55.0%
GGACATTCATCTGCCTGCTC+AGG - chr4.1:19809673-19809692 None:intergenic 55.0%
GGATGCAAGGGCCAAAACTG+TGG - chr4.1:19807645-19807664 None:intergenic 55.0%
GTCGGTACTCTGTCTCTCTG+TGG + chr4.1:19806875-19806894 MS.gene028458:intron 55.0%
GTGAATGGCCCCCACATTGT+TGG - chr4.1:19808890-19808909 None:intergenic 55.0%
GTTGGCAACACCTGAGGCTA+TGG + chr4.1:19807033-19807052 MS.gene028458:CDS 55.0%
TCCTGTGGCAGTTCTGTGTG+AGG + chr4.1:19807796-19807815 MS.gene028458:CDS 55.0%
TGAAGTCTTGGCCAGTCCCA+GGG + chr4.1:19809819-19809838 MS.gene028458:intron 55.0%
TGGTACCACCACAGGTGTGT+CGG + chr4.1:19807604-19807623 MS.gene028458:CDS 55.0%
! AAAGCTGCGTTGACCTCTGG+AGG + chr4.1:19806656-19806675 MS.gene028458:CDS 55.0%
! GGGGCAGATACAGCTCTAAC+AGG + chr4.1:19806752-19806771 MS.gene028458:CDS 55.0%
!! AGGTGTGTCGGCTCAGGATA+GGG + chr4.1:19807616-19807635 MS.gene028458:CDS 55.0%
ATCCTGAGCCGACACACCTG+TGG - chr4.1:19807615-19807634 None:intergenic 60.0%
CAGATTGAGGCTGCTGGCAG+AGG + chr4.1:19810273-19810292 MS.gene028458:CDS 60.0%
CGCCCTAGCTGCACTTGTGT+AGG + chr4.1:19807334-19807353 MS.gene028458:intron 60.0%
CGGTAGCGCTTGGAACACTG+GGG + chr4.1:19806732-19806751 MS.gene028458:CDS 60.0%
GCGGGAAAATATGGCCTGGG+CGG - chr4.1:19807694-19807713 None:intergenic 60.0%
GCGGTAGCGCTTGGAACACT+GGG + chr4.1:19806731-19806750 MS.gene028458:CDS 60.0%
GGATCTGCCAGGTGTGACTG+CGG + chr4.1:19810225-19810244 MS.gene028458:CDS 60.0%
GGTAGCGCTTGGAACACTGG+GGG + chr4.1:19806733-19806752 MS.gene028458:CDS 60.0%
GTGAAGTCTTGGCCAGTCCC+AGG + chr4.1:19809818-19809837 MS.gene028458:intron 60.0%
TGCGGTAGCGCTTGGAACAC+TGG + chr4.1:19806730-19806749 MS.gene028458:CDS 60.0%
!! CAGGTGTGTCGGCTCAGGAT+AGG + chr4.1:19807615-19807634 MS.gene028458:CDS 60.0%
!! GGACTTCTAGCCTTGGCAGC+TGG - chr4.1:19809517-19809536 None:intergenic 60.0%
CTGAGCCGACACACCTGTGG+TGG - chr4.1:19807612-19807631 None:intergenic 65.0%
! GCTGCGTTGACCTCTGGAGG+AGG + chr4.1:19806659-19806678 MS.gene028458:CDS 65.0%
! GGCTGCTGGCAGAGGTGTGT+TGG + chr4.1:19810281-19810300 MS.gene028458:CDS 65.0%
!! CACCACAGGTGTGTCGGCTC+AGG + chr4.1:19807610-19807629 MS.gene028458:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 19806572 19810897 19806572 ID=MS.gene028458
chr4.1 mRNA 19806572 19810897 19806572 ID=MS.gene028458.t1;Parent=MS.gene028458
chr4.1 exon 19806572 19806874 19806572 ID=MS.gene028458.t1.exon1;Parent=MS.gene028458.t1
chr4.1 CDS 19806572 19806874 19806572 ID=cds.MS.gene028458.t1;Parent=MS.gene028458.t1
chr4.1 exon 19806971 19807192 19806971 ID=MS.gene028458.t1.exon2;Parent=MS.gene028458.t1
chr4.1 CDS 19806971 19807192 19806971 ID=cds.MS.gene028458.t1;Parent=MS.gene028458.t1
chr4.1 exon 19807593 19807915 19807593 ID=MS.gene028458.t1.exon3;Parent=MS.gene028458.t1
chr4.1 CDS 19807593 19807915 19807593 ID=cds.MS.gene028458.t1;Parent=MS.gene028458.t1
chr4.1 exon 19808835 19808964 19808835 ID=MS.gene028458.t1.exon4;Parent=MS.gene028458.t1
chr4.1 CDS 19808835 19808964 19808835 ID=cds.MS.gene028458.t1;Parent=MS.gene028458.t1
chr4.1 exon 19810156 19810452 19810156 ID=MS.gene028458.t1.exon5;Parent=MS.gene028458.t1
chr4.1 CDS 19810156 19810452 19810156 ID=cds.MS.gene028458.t1;Parent=MS.gene028458.t1
chr4.1 exon 19810646 19810897 19810646 ID=MS.gene028458.t1.exon6;Parent=MS.gene028458.t1
chr4.1 CDS 19810646 19810897 19810646 ID=cds.MS.gene028458.t1;Parent=MS.gene028458.t1
Gene Sequence

>MS.gene028458

ATGATTCATGTGCGTGGCTCAGATTTGGCATTTGTTCGGCTGAGCTCAAAATTCCCTTCATGTCGCAATGCGGTATGTAGAGTTAAAGCTGCGTTGACCTCTGGAGGAGGAGACCTAAAAAATGAAGATCTGGTTGGCGTTGAATCAGCACAGCTTAATGCGGTAGCGCTTGGAACACTGGGGGCAGATACAGCTCTAACAGGCAGTGGCTTTTCTGATGATAACGATGACTTCGATTCAGACAGTCCAACAAAAGGTTTTGCTTCCATACCTGAGGCTATTGAAGACATTCGGAATGGAAAGGTCGGTACTCTGTCTCTCTGTGGGTATTCTATATAAAAGTTTTGGTTTTGTTGCCTCCACTTAGATTTCCGTTATTAACTGACATTAGTACTTCAGATGGTAGTGGTTGTAGATGACGAGGACAGAGAAAACGAAGGAGATCTAATAATGGCAGCACAGTTGGCAACACCTGAGGCTATGGCTTTTATTGTGAAGCACGGAACTGGCATAGTTTGTATAAGCATGAAAGAGGAAGACCTGGAGAGATTAGAGCTTCCTTTGATGGTCAACAGTCGGGATAATGATGAGAAACTCCGTACAGCATTCACTGTGACAGTGGTATGTACAATTTGGTGCGTGCATTTTTTTATCTGGAGCTAGTTCTGTATCTTTCTGATCAAAACTCTTCCATTCTTACATCATCTAAAACACTATTTACTCACCTTCATGTGATGGTCAACTTTAGGGAATAATTTCTCTCGCCCTAGCTGCACTTGTGTAGGCATTAAGTTCGACAAAAAATCAGCGTGACTTCACTTTGTTGTATTTAATATCTTTTGTCTCCCAGTATGTAACAGACATTTACTTATTATATACTAGAATAGCATCATGTCATGTTTTAAAAAAAAAAAAAAATAGCATCATGTCAAAAACAGTTATTGAAATTTAATAAAATATAACTTTGTGGTAGAAATTTTGTTCCTACGCAACTCAGGAACTTATCAATGCAATTTTGTAGGATGCCAAATATGGTACCACCACAGGTGTGTCGGCTCAGGATAGGGCAACCACAGTTTTGGCCCTTGCATCCAAAGATTCAAAACCAAGTGATTTCAACCGCCCAGGCCATATTTTCCCGCTAAAATACAGGGAAGGTGGTATCTTGAAGAGAGCTGGACATACAGAAGCTTCAGTTGATCTTGCAGTACTTGCTGGTTTGGATCCTGTGGCAGTTCTGTGTGAGGTTGTAGATGATGATGGTTCCATGGCTAGATTACCTAAGCTTCGCCAGTTTGCAGAGCGTGAAAATTTGAAAATTATATCTATTGCTGACTTAATAAGGTACTCAATGTTGTAGCATGTTGCGAAATACGTTGTATGTTAGGACCCAATATGAGAGGGTTTTTAAGTAATTAGTAGGTGGCTAAGTAGGGTTAAGTAGATTATTAGCAAGTTTCTCATTAGGGTTAAATAATAAAAAGCTCACGAGGGTTAAATAATAGAATGTTCTCTTTATTTGTATATAAAGGGAAATTCTTGTGAGTTGTAGGTTTGACGGAATATGTTTCTGTTAGGACCAGAGTAGGATTCCTCTGAGTCAGTGAGTTGTGTCGGAGCTTAACTTTGGTAGTAGTTAGAGAAACCCTCTACTACTATTGTCATTACTATCAATAAAGCACCCTATTTTCCTTAATTGTCATCTATTTCTTCTTGTTTGTGCTGTGTTACTGTTGGTTTATTGCAGGATCCATTGGGTTCTACCATTGTATGCAATTTTTGTTGTCGGTCACGTTCATATTTTGCTTTCAGTTACAGCTAGCATAATTTAAATCCCTCATGTTGTCTGCTACCGTGATTTGTCTTTCAAAAATTCGAACTACATAACTAGAAATTCAATCAATTTGGTTTTTTGTGGTGCTTGCTCCTAATTTTAGAGGTTGCTATCAGTCAATTTTCATGATTGCTTATGTGTTAAGTTCTTTTTTCTACTTTGTGCATTTCACTGAATATATTTTTTTCTATACCATTACAAAAATTGAAATCCTATCTTGTTTATCTTCCATTAAATACCTTGCACTGCAGTTATTAAACAAAAAATCTCCTTTAAGCGCAGTTAAATTTTTCCGTGGTTATTTTGTCTTTATATGCCTCTATTTTTTGTTCCTTACCTGATTCATCTTTAGCTAATTTTTCTTCCTGGATTCTTTTTGTTTCTTTTCTGGTTACCTATCGAGGAGATTAACACCTATTGGTCTGGCAGGTATAGAAGGAAGAGAGATAAACTAGTGGAACGTGCTGGTGCTGCACTAATACCAACAATGTGGGGGCCATTCACAGCTAACTGTTATAGGTCACTTTTAGATGGGATGGAGCATATTGCGATGGTAAAGGTGAGAAATCGCGTGTCTATATTGAACTATATATATGGATAGTAATATGCATGAATATTTTTGATAGTTTAACTTTGATTTTAACTAAATGGATGAGAAAGCATAAGAGAGATACCAATATGGTAGAGCAATATGATTTAGCTAATTAGCACTTCTATGTTAAGCATACAACACTGCATTATTTTCTATTCTTCAGTCAAACCTTTTTTTTTAATCATATATTGATAATAACCTGTTGTTACATTGCCGTGGCTGTCAAAAAAATAAATAAATAAATAAAAATTGAGTCACATCGAGGCTGCTGTTTTCCATACTTTCTTTAGTTTTTTTTTATATCCTGCCTGCTGAGGGTGTAATAATAATAGTATGATACTAAGAAGCCCAATTCTTGAAGTCCAGAGAGAGTTTCAACTCACAACATTCCAATACATAACTTGTTTGATGAAGTCCCTACATTTGGAATAGAAGCTAAGCTATTGGCATAAAGGAAAATGACATACTTCCCTAGGATTGGCACCTTAAAATATCGAACTACTTACAAATTGTCTGCCAGCTGCCAAGGCTAGAAGTCCCAAAAAATCTCAGATAGGGGCCTTCGTCTTTTTCCCGTGAGTTAACTTGAAATTCTGCAGCATTGTCCTGATGGCTTTGCAGAGTTCTGATCCACAAATACTTTGGCTTCAACAAAATAAATGATATAGAATGCCTGAGCAGGCAGATGAATGTCCCTGAATTTTTTCAAAATGAATAGAGAAGAAAAAGGTAAAAAGAACCTTGATCCAGGGTCCACAAATAGGATCCACTAAGAGGTAAACTTTGTGTGTTTAGGCCACTCTAATGCCCACAAGATTGAGTGAAGTCTTGGCCAGTCCCAGGGATCTAGTCATCTTTCTATTTGGATGTGTAGCCCAGGAATGGAATTCTCATTGACTGAAATTGGGATGTCAGTCTACTTGTTATCCTTTAACTGACAAGATCAGTTTTTTTTTTTTATTTTCTTTAGGTGATAAATTGATGTACACCCCTTTTTTCAACATTTTTGCATTCAAGGCATTTTCTATAAGCCTGCAGGATTTGAAAATCGGCAAACTCTTCCAATTATCTTGAACCTTTCAATTTTAAATTTTATATTGCTTGATTCAATACTCGACACTTAGCCTTTGTTATGGTTGGACATTTCTTATTTAACAGGGTGACATTGGGGATGGATGTGATGTTCTTGTGAGGGTACACTCAGAGTGTCTCACAGGAGACATATTTGGATCTGCCAGGTGTGACTGCGGAAATCAATTGGCTCTTGCAATGCAACAGATTGAGGCTGCTGGCAGAGGTGTGTTGGTATATCTTCGAGGACATGAAGGAAGGGGTATTGGATTGGGCCACAAGCTTCGTGCTTATAACCTACAGGATGAGGGAAGGGATACTGTAGAAGCCAATGAGGAGTTGGGATTGCCTGTTGACTCAAGGGAGTATGGAATTGGTGCACAGGTAATTATAATAAAAATAATTAGTCGCTTGAATATTGAACATCTTATACTCAATTATTTTACTGTATTCAATTCATGGTGATTTACATGATTATTAAGTTCACTGGCATGCTATTGTCCATACAACATAGAACTAGATGTTTTAGGCAGTTGGATTCACTCATAATGGTTAGAATTTGAAATTGTAATTGCAGATATTGAGGGACTTGGGTGTTCGTTCTATGAAGCTAATGACAAACAATCCGGCAAAATATGTTGGGCTCAAAGGTTATGGTTTGTCCATTTCAGGTAGGATCGCATTGTTATCACTTATCACAAATGAAAACAGGAGATACTTGGAAACCAAACGTGTGAAGATGGGTCACATGTATGGCTTGGAATTTAACAGCAAATTGAATGGTAATGCCAGTAATATTGATGATTCCAGTACTGCTCCTGGCACATAA

Protein sequence

>MS.gene028458.t1

MIHVRGSDLAFVRLSSKFPSCRNAVCRVKAALTSGGGDLKNEDLVGVESAQLNAVALGTLGADTALTGSGFSDDNDDFDSDSPTKGFASIPEAIEDIRNGKMVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCISMKEEDLERLELPLMVNSRDNDEKLRTAFTVTVDAKYGTTTGVSAQDRATTVLALASKDSKPSDFNRPGHIFPLKYREGGILKRAGHTEASVDLAVLAGLDPVAVLCEVVDDDGSMARLPKLRQFAERENLKIISIADLIRYRRKRDKLVERAGAALIPTMWGPFTANCYRSLLDGMEHIAMVKGDIGDGCDVLVRVHSECLTGDIFGSARCDCGNQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDEGRDTVEANEELGLPVDSREYGIGAQILRDLGVRSMKLMTNNPAKYVGLKGYGLSISGRIALLSLITNENRRYLETKRVKMGHMYGLEFNSKLNGNASNIDDSSTAPGT