Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029365.t1 | XP_013470223.1 | 98 | 200 | 4 | 0 | 1 | 200 | 7 | 206 | 4.00E-102 | 380.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029365.t1 | Q9SX28 | 77.0 | 200 | 45 | 1 | 1 | 200 | 7 | 205 | 3.1e-79 | 296.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029365.t1 | I3SF71 | 98.0 | 200 | 4 | 0 | 1 | 200 | 7 | 206 | 2.9e-102 | 380.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76270 | MS.gene029365 | PPI |
| MS.gene029365 | MS.gene029368 | PPI |
| MS.gene029368 | MS.gene029365 | PPI |
| MS.gene029366 | MS.gene029365 | PPI |
| MS.gene029365 | MS.gene065100 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029365.t1 | MTR_1g111390 | 98.000 | 200 | 4 | 0 | 1 | 200 | 7 | 206 | 2.33e-141 | 394 |
| MS.gene029365.t1 | MTR_7g079850 | 43.434 | 198 | 99 | 1 | 2 | 199 | 76 | 260 | 1.22e-45 | 153 |
| MS.gene029365.t1 | MTR_1g046730 | 38.942 | 208 | 105 | 6 | 1 | 200 | 151 | 344 | 1.63e-30 | 115 |
| MS.gene029365.t1 | MTR_5g009810 | 32.057 | 209 | 116 | 4 | 1 | 200 | 138 | 329 | 7.29e-19 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029365.t1 | AT1G68650 | 77.000 | 200 | 45 | 1 | 1 | 200 | 7 | 205 | 3.30e-99 | 288 |
| MS.gene029365.t1 | AT1G25520 | 76.617 | 201 | 46 | 1 | 1 | 200 | 7 | 207 | 1.06e-98 | 286 |
| MS.gene029365.t1 | AT5G36290 | 41.709 | 199 | 98 | 2 | 4 | 199 | 87 | 270 | 3.69e-43 | 147 |
| MS.gene029365.t1 | AT5G36290 | 41.709 | 199 | 98 | 2 | 4 | 199 | 87 | 270 | 3.69e-43 | 147 |
| MS.gene029365.t1 | AT4G13590 | 38.863 | 211 | 101 | 5 | 1 | 200 | 145 | 338 | 5.54e-33 | 122 |
| MS.gene029365.t1 | AT4G13590 | 38.863 | 211 | 101 | 5 | 1 | 200 | 145 | 338 | 5.66e-33 | 122 |
| MS.gene029365.t1 | AT1G64150 | 32.558 | 215 | 104 | 4 | 1 | 199 | 158 | 347 | 3.04e-19 | 85.5 |
Find 55 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTGAAAGAGGCTATATT+TGG | 0.236172 | 1.4:-85334997 | MS.gene029365:CDS |
| TTTCTCTCCCATCTTGTTAC+AGG | 0.249070 | 1.4:-85334150 | MS.gene029365:intron |
| TTCTCTCTGTTCTTGTTGGT+TGG | 0.281934 | 1.4:-85335329 | MS.gene029365:CDS |
| AACCCATTTGGCGTGGTTCT+TGG | 0.294089 | 1.4:-85333871 | MS.gene029365:CDS |
| TGTACTTCTGCTGCTGTTAT+CGG | 0.295744 | 1.4:-85333560 | MS.gene029365:CDS |
| AAAAGAATGCTCACCAGATT+TGG | 0.305070 | 1.4:+85335300 | None:intergenic |
| ATTACGACGTTCTTATTCTT+CGG | 0.306446 | 1.4:-85335033 | MS.gene029365:CDS |
| CAAGATTGGGGTGAGGTAGA+AGG | 0.310224 | 1.4:-85332573 | MS.gene029365:CDS |
| ACAATTCTCTCTGTTCTTGT+TGG | 0.313902 | 1.4:-85335333 | MS.gene029365:CDS |
| TGGTTGGGCTGCTCCAAATC+TGG | 0.336034 | 1.4:-85335313 | MS.gene029365:intron |
| CCACGACGCCTTGTCTTAAC+AGG | 0.342518 | 1.4:-85335504 | MS.gene029365:CDS |
| TCTCTCTGTTCTTGTTGGTT+GGG | 0.349163 | 1.4:-85335328 | MS.gene029365:CDS |
| GGAAGTAATAAAACAAGATT+GGG | 0.356011 | 1.4:-85332586 | MS.gene029365:CDS |
| TTACGACGTTCTTATTCTTC+GGG | 0.364759 | 1.4:-85335032 | MS.gene029365:CDS |
| AAGATTGGGGTGAGGTAGAA+GGG | 0.385206 | 1.4:-85332572 | MS.gene029365:CDS |
| ATTGTAATTAGGACAAAGAT+TGG | 0.389163 | 1.4:-85334750 | MS.gene029365:intron |
| TATTCTTCGGGTTTGGACTT+TGG | 0.392999 | 1.4:-85335020 | MS.gene029365:CDS |
| CCTCCAAGAACCACGCCAAA+TGG | 0.394458 | 1.4:+85333868 | None:intergenic |
| ACGTTCTTATTCTTCGGGTT+TGG | 0.403780 | 1.4:-85335027 | MS.gene029365:CDS |
| AGGAAGTAATAAAACAAGAT+TGG | 0.418084 | 1.4:-85332587 | MS.gene029365:CDS |
| GGCTGAAGTTGAAGCTGAAC+TGG | 0.424673 | 1.4:-85334840 | MS.gene029365:intron |
| TCCAAATATAGCCTCTTTCA+AGG | 0.428412 | 1.4:+85334996 | None:intergenic |
| AGCTACAAAAGATACCAAAA+AGG | 0.435268 | 1.4:-85334713 | MS.gene029365:intron |
| GCTGCAGATGAAAACCCATT+TGG | 0.436487 | 1.4:-85333883 | MS.gene029365:CDS |
| TTATGCAGATCTCTCGTAGT+TGG | 0.455915 | 1.4:-85335065 | MS.gene029365:intron |
| TATGCAGATCTCTCGTAGTT+GGG | 0.473253 | 1.4:-85335064 | MS.gene029365:intron |
| CCATTTGGCGTGGTTCTTGG+AGG | 0.480629 | 1.4:-85333868 | MS.gene029365:CDS |
| TTCATCTGCAGCTAAACCTA+TGG | 0.483168 | 1.4:+85333894 | None:intergenic |
| ATTTATTACCTGTAACAAGA+TGG | 0.486365 | 1.4:+85334142 | None:intergenic |
| CATTTGGCGTGGTTCTTGGA+GGG | 0.488586 | 1.4:-85333867 | MS.gene029365:CDS |
| TTTGTTCAGTTGGCTACCAT+AGG | 0.495409 | 1.4:-85333910 | MS.gene029365:intron |
| TGGACTTTGGTCCTTGAAAG+AGG | 0.497549 | 1.4:-85335007 | MS.gene029365:CDS |
| AAAACCAAGCTTGTTTGTAT+GGG | 0.498552 | 1.4:-85332545 | MS.gene029365:CDS |
| CTCCAAGAACCACGCCAAAT+GGG | 0.499798 | 1.4:+85333869 | None:intergenic |
| TTTATTACCTGTAACAAGAT+GGG | 0.502150 | 1.4:+85334143 | None:intergenic |
| GGACAGGGAATCAGAGGAGT+TGG | 0.506438 | 1.4:-85334861 | MS.gene029365:intron |
| CTGTTAAGACAAGGCGTCGT+GGG | 0.520280 | 1.4:+85335505 | None:intergenic |
| AAAGAGGCTATATTTGGAGA+AGG | 0.530172 | 1.4:-85334991 | MS.gene029365:CDS |
| AAGAGGCTATATTTGGAGAA+GGG | 0.538449 | 1.4:-85334990 | MS.gene029365:intron |
| AGATTGGGGTGAGGTAGAAG+GGG | 0.542993 | 1.4:-85332571 | MS.gene029365:CDS |
| ACAACCCATACAAACAAGCT+TGG | 0.553522 | 1.4:+85332541 | None:intergenic |
| TGAATGGGGTGACAAGAGCC+AGG | 0.563011 | 1.4:-85334019 | MS.gene029365:intron |
| TTTGATGGACAGGGAATCAG+AGG | 0.572662 | 1.4:-85334867 | MS.gene029365:intron |
| TAATTAGGACAAAGATTGGA+AGG | 0.578900 | 1.4:-85334746 | MS.gene029365:intron |
| ACTTCTGCTGCTGTTATCGG+AGG | 0.588680 | 1.4:-85333557 | MS.gene029365:CDS |
| GATCTCAGAGAGAACGGTCA+TGG | 0.590501 | 1.4:+85336081 | None:intergenic |
| ATGACCGTTCTCTCTGAGAT+CGG | 0.592001 | 1.4:-85336079 | MS.gene029365:CDS |
| CCTGTTAAGACAAGGCGTCG+TGG | 0.599776 | 1.4:+85335504 | None:intergenic |
| CGAGGCAACCTGTTAAGACA+AGG | 0.611382 | 1.4:+85335496 | None:intergenic |
| ATCACCGATCTCAGAGAGAA+CGG | 0.615665 | 1.4:+85336075 | None:intergenic |
| AATAAAACAAGATTGGGGTG+AGG | 0.618298 | 1.4:-85332580 | MS.gene029365:CDS |
| CTTCTGCTGCTGTTATCGGA+GGG | 0.621384 | 1.4:-85333556 | MS.gene029365:CDS |
| AGATGAAAACCCATTTGGCG+TGG | 0.640914 | 1.4:-85333878 | MS.gene029365:CDS |
| GAAGTAATAAAACAAGATTG+GGG | 0.671838 | 1.4:-85332585 | MS.gene029365:CDS |
| TTCTTACTATCAAAGCTGCG+AGG | 0.724515 | 1.4:+85335478 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTAGTTGTTTATTAC+AGG | - | chr1.4:85335032-85335051 | MS.gene029365:CDS | 15.0% |
| !! | ATTATTAGTTGTTTATTACA+GGG | - | chr1.4:85335033-85335052 | MS.gene029365:CDS | 15.0% |
| !! | GAAATTACTTGAATTAAAAA+AGG | + | chr1.4:85335201-85335220 | None:intergenic | 15.0% |
| !! | TTCCTACATTAATTAAATTT+GGG | + | chr1.4:85335662-85335681 | None:intergenic | 15.0% |
| !!! | TTTCATTTTCTTGTATATAT+TGG | - | chr1.4:85334652-85334671 | MS.gene029365:intron | 15.0% |
| !! | AAAAACAAAGATAACAAATC+TGG | + | chr1.4:85333216-85333235 | None:intergenic | 20.0% |
| !! | AACTTATTCATACTTTGAAT+AGG | - | chr1.4:85334220-85334239 | MS.gene029365:intron | 20.0% |
| !! | AATAGCATGAAAATCAATAA+GGG | + | chr1.4:85333544-85333563 | None:intergenic | 20.0% |
| !! | AGATAACAAATATATCAAAC+AGG | - | chr1.4:85333003-85333022 | MS.gene029365:intron | 20.0% |
| !! | AGTAAATGAAAAAGAAGTAA+TGG | - | chr1.4:85335244-85335263 | MS.gene029365:intron | 20.0% |
| !! | ATCAAAGAAAAAAGATAATG+CGG | + | chr1.4:85333516-85333535 | None:intergenic | 20.0% |
| !! | ATTACTTGAATTAAAAAAGG+TGG | + | chr1.4:85335198-85335217 | None:intergenic | 20.0% |
| !! | ATTCAGTTACAATTCATTAT+TGG | - | chr1.4:85332792-85332811 | MS.gene029365:intron | 20.0% |
| !! | CAAATATATCTTTAACCATT+TGG | + | chr1.4:85334126-85334145 | None:intergenic | 20.0% |
| !! | CAAATGGTTAAAGATATATT+TGG | - | chr1.4:85334124-85334143 | MS.gene029365:intron | 20.0% |
| !! | CTTCCTACATTAATTAAATT+TGG | + | chr1.4:85335663-85335682 | None:intergenic | 20.0% |
| !! | CTTGTAAAATTTCGAATTAT+AGG | - | chr1.4:85333266-85333285 | MS.gene029365:intron | 20.0% |
| !! | GAGTTTCAATTTCAAATATT+AGG | - | chr1.4:85332849-85332868 | MS.gene029365:intron | 20.0% |
| !! | TAATAGCATGAAAATCAATA+AGG | + | chr1.4:85333545-85333564 | None:intergenic | 20.0% |
| !! | TATGACAAATAATGTGTATT+AGG | + | chr1.4:85334402-85334421 | None:intergenic | 20.0% |
| !! | TTAAAAAAGGTGGAAAAAAA+AGG | + | chr1.4:85335188-85335207 | None:intergenic | 20.0% |
| !! | TTATTAGTTGTTTATTACAG+GGG | - | chr1.4:85335034-85335053 | MS.gene029365:CDS | 20.0% |
| !! | TTCATTAGAAATGTATAATC+AGG | + | chr1.4:85333689-85333708 | None:intergenic | 20.0% |
| !! | TTCGTAATAAATTCATTTGA+TGG | - | chr1.4:85333745-85333764 | MS.gene029365:intron | 20.0% |
| !!! | AGTAGACAAAATATTTTCTA+TGG | + | chr1.4:85334085-85334104 | None:intergenic | 20.0% |
| !!! | CATTATTTGTCATATTTTTC+AGG | - | chr1.4:85334408-85334427 | MS.gene029365:intron | 20.0% |
| !!! | CTATAATTCGAAATTTTACA+AGG | + | chr1.4:85333268-85333287 | None:intergenic | 20.0% |
| !!! | GGAATTCTTTTTATTGTTTT+TGG | - | chr1.4:85335406-85335425 | MS.gene029365:intron | 20.0% |
| !!! | TAACTTTTTTTTTGTTCAGT+TGG | - | chr1.4:85334707-85334726 | MS.gene029365:intron | 20.0% |
| !!! | TATCTTTGTTTTTAAAGTAG+TGG | - | chr1.4:85333223-85333242 | MS.gene029365:intron | 20.0% |
| ! | AAAAAGGTGACAAAAACATA+TGG | + | chr1.4:85335172-85335191 | None:intergenic | 25.0% |
| ! | AAATGTTGAATACAGCATTT+AGG | + | chr1.4:85335366-85335385 | None:intergenic | 25.0% |
| ! | AACAAATATATCAAACAGGA+AGG | - | chr1.4:85333007-85333026 | MS.gene029365:intron | 25.0% |
| ! | AAGTGAAAAGGAATCAAATT+TGG | + | chr1.4:85334554-85334573 | None:intergenic | 25.0% |
| ! | ACAAATATATCAAACAGGAA+GGG | - | chr1.4:85333008-85333027 | MS.gene029365:intron | 25.0% |
| ! | AGGAAGTAATAAAACAAGAT+TGG | - | chr1.4:85336040-85336059 | MS.gene029365:intron | 25.0% |
| ! | ATGCCACAAAAAAACATAAA+CGG | - | chr1.4:85334437-85334456 | MS.gene029365:intron | 25.0% |
| ! | ATGTGAAAGTTAGCATAAAA+AGG | - | chr1.4:85335806-85335825 | MS.gene029365:intron | 25.0% |
| ! | ATTCTAATTTACTACACTAC+TGG | - | chr1.4:85335313-85335332 | MS.gene029365:intron | 25.0% |
| ! | ATTGTAATTAGGACAAAGAT+TGG | - | chr1.4:85333877-85333896 | MS.gene029365:CDS | 25.0% |
| ! | ATTTATTACCTGTAACAAGA+TGG | + | chr1.4:85334488-85334507 | None:intergenic | 25.0% |
| ! | CATAATTCCTAAAATTGAAG+GGG | - | chr1.4:85332897-85332916 | MS.gene029365:intron | 25.0% |
| ! | GAAAATAGTCATAATCTTGA+AGG | + | chr1.4:85334846-85334865 | None:intergenic | 25.0% |
| ! | GAAGTAATAAAACAAGATTG+GGG | - | chr1.4:85336042-85336061 | MS.gene029365:intron | 25.0% |
| ! | GAATTCAGTTAAATATTGCA+TGG | + | chr1.4:85334522-85334541 | None:intergenic | 25.0% |
| ! | GACCCAAATTTAATTAATGT+AGG | - | chr1.4:85335657-85335676 | MS.gene029365:intron | 25.0% |
| ! | GAGAAAAACTGAGATAAAAA+TGG | + | chr1.4:85334463-85334482 | None:intergenic | 25.0% |
| ! | GCATAATTCCTAAAATTGAA+GGG | - | chr1.4:85332896-85332915 | MS.gene029365:intron | 25.0% |
| ! | GGAAGTAATAAAACAAGATT+GGG | - | chr1.4:85336041-85336060 | MS.gene029365:intron | 25.0% |
| ! | TAAACCATAGACTCTTTAAA+AGG | + | chr1.4:85335608-85335627 | None:intergenic | 25.0% |
| ! | TAAATGCTGTATTCAACATT+TGG | - | chr1.4:85335365-85335384 | MS.gene029365:intron | 25.0% |
| ! | TATTAGTTGTTTATTACAGG+GGG | - | chr1.4:85335035-85335054 | MS.gene029365:CDS | 25.0% |
| ! | TCAAAGAAAAAAGATAATGC+GGG | + | chr1.4:85333515-85333534 | None:intergenic | 25.0% |
| ! | TCAGCATGAGTATATATTAT+AGG | - | chr1.4:85333469-85333488 | MS.gene029365:intron | 25.0% |
| ! | TGCATAATTCCTAAAATTGA+AGG | - | chr1.4:85332895-85332914 | MS.gene029365:intron | 25.0% |
| ! | TGTGATATTTGATTACCAAA+TGG | - | chr1.4:85334108-85334127 | MS.gene029365:intron | 25.0% |
| ! | TTGAGGTGAGAAAATAAATA+AGG | + | chr1.4:85332627-85332646 | None:intergenic | 25.0% |
| ! | TTGTCCTAATTACAATACAA+GGG | + | chr1.4:85333873-85333892 | None:intergenic | 25.0% |
| ! | TTTATTACCTGTAACAAGAT+GGG | + | chr1.4:85334487-85334506 | None:intergenic | 25.0% |
| ! | TTTGTCCTAATTACAATACA+AGG | + | chr1.4:85333874-85333893 | None:intergenic | 25.0% |
| !! | AAACCATAGACTCTTTAAAA+GGG | + | chr1.4:85335607-85335626 | None:intergenic | 25.0% |
| !! | AATAAATTCATTTGATGGAC+AGG | - | chr1.4:85333750-85333769 | MS.gene029365:intron | 25.0% |
| !! | AATTAATGTAGGAAGTTGAT+TGG | - | chr1.4:85335668-85335687 | MS.gene029365:intron | 25.0% |
| !! | AGATTATGACTATTTTCCTT+TGG | - | chr1.4:85334849-85334868 | MS.gene029365:CDS | 25.0% |
| !! | ATAAATTCATTTGATGGACA+GGG | - | chr1.4:85333751-85333770 | MS.gene029365:intron | 25.0% |
| !!! | CAGGTATTATTTTACCTTTT+TGG | + | chr1.4:85333931-85333950 | None:intergenic | 25.0% |
| !!! | GCATTTTCTATCACTTTTTT+TGG | - | chr1.4:85334585-85334604 | MS.gene029365:intron | 25.0% |
| !!! | GTTGGTTTTTCAACATTATT+TGG | - | chr1.4:85333809-85333828 | MS.gene029365:intron | 25.0% |
| !!! | TATCACTTTTTTTGGTGAAT+GGG | - | chr1.4:85334593-85334612 | MS.gene029365:intron | 25.0% |
| !!! | TGAATAGTTATTGAGTTGAT+TGG | + | chr1.4:85332718-85332737 | None:intergenic | 25.0% |
| AAAAGGAATCAAATTTGGCA+TGG | + | chr1.4:85334549-85334568 | None:intergenic | 30.0% | |
| AAAGATTGGAAGGCTAAAAA+TGG | - | chr1.4:85333891-85333910 | MS.gene029365:CDS | 30.0% | |
| AACACCCTTGTATTGTAATT+AGG | - | chr1.4:85333866-85333885 | MS.gene029365:CDS | 30.0% | |
| AAGATAAAGAGGTTAAGTGT+AGG | + | chr1.4:85335846-85335865 | None:intergenic | 30.0% | |
| AATGATGAAGTCTATGCTAT+TGG | - | chr1.4:85335455-85335474 | MS.gene029365:intron | 30.0% | |
| AGCTACAAAAGATACCAAAA+AGG | - | chr1.4:85333914-85333933 | MS.gene029365:intron | 30.0% | |
| ATTACGACGTTCTTATTCTT+CGG | - | chr1.4:85333594-85333613 | MS.gene029365:intron | 30.0% | |
| ATTGGTTAGTGATTATTCTC+AGG | - | chr1.4:85335473-85335492 | MS.gene029365:intron | 30.0% | |
| CAAATCTGGAAAAGAAAGAA+AGG | + | chr1.4:85333202-85333221 | None:intergenic | 30.0% | |
| CAGCACAGATTTAATTAAAC+AGG | + | chr1.4:85333950-85333969 | None:intergenic | 30.0% | |
| GAATAGATGCAACAATTTCT+AGG | - | chr1.4:85335278-85335297 | MS.gene029365:intron | 30.0% | |
| GTTAATGAAGAAACAAATGC+AGG | + | chr1.4:85334878-85334897 | None:intergenic | 30.0% | |
| TAAGAAATTTGTAGCACCTT+AGG | + | chr1.4:85335000-85335019 | None:intergenic | 30.0% | |
| TAATTAGGACAAAGATTGGA+AGG | - | chr1.4:85333881-85333900 | MS.gene029365:CDS | 30.0% | |
| TGATGCTTATTTCAAGATAC+TGG | - | chr1.4:85333089-85333108 | MS.gene029365:intron | 30.0% | |
| TGCTACAAATTTCTTAGAAG+AGG | - | chr1.4:85335004-85335023 | MS.gene029365:CDS | 30.0% | |
| ! | AAAAACCAAGCTTGTTTGTA+TGG | - | chr1.4:85336081-85336100 | MS.gene029365:CDS | 30.0% |
| ! | AAAACCAAGCTTGTTTGTAT+GGG | - | chr1.4:85336082-85336101 | MS.gene029365:CDS | 30.0% |
| ! | AGAAGTAATGGAAAACTTGA+TGG | - | chr1.4:85335256-85335275 | MS.gene029365:intron | 30.0% |
| ! | AGTAGTGCAATTGAAGATTT+TGG | + | chr1.4:85334277-85334296 | None:intergenic | 30.0% |
| ! | ATCTCAGATTTCTGAAAAAG+TGG | - | chr1.4:85335105-85335124 | MS.gene029365:intron | 30.0% |
| ! | ATTATCACCCCTTCAATTTT+AGG | + | chr1.4:85332907-85332926 | None:intergenic | 30.0% |
| !! | GTATAATCAGGTTGATATGA+GGG | + | chr1.4:85333677-85333696 | None:intergenic | 30.0% |
| !! | TGATGATTCTGAAGTTAAAC+CGG | + | chr1.4:85333356-85333375 | None:intergenic | 30.0% |
| !! | TGTATAATCAGGTTGATATG+AGG | + | chr1.4:85333678-85333697 | None:intergenic | 30.0% |
| !!! | ATCACTTTTTTTGGTGAATG+GGG | - | chr1.4:85334594-85334613 | MS.gene029365:intron | 30.0% |
| !!! | CTATCACTTTTTTTGGTGAA+TGG | - | chr1.4:85334592-85334611 | MS.gene029365:intron | 30.0% |
| AAAAGAATGCTCACCAGATT+TGG | + | chr1.4:85333330-85333349 | None:intergenic | 35.0% | |
| AAAGAGGCTATATTTGGAGA+AGG | - | chr1.4:85333636-85333655 | MS.gene029365:intron | 35.0% | |
| AAGAGGCTATATTTGGAGAA+GGG | - | chr1.4:85333637-85333656 | MS.gene029365:intron | 35.0% | |
| AATAAAACAAGATTGGGGTG+AGG | - | chr1.4:85336047-85336066 | MS.gene029365:intron | 35.0% | |
| ACAATTCTCTCTGTTCTTGT+TGG | - | chr1.4:85333294-85333313 | MS.gene029365:intron | 35.0% | |
| ACAGATATGTCTTATGCCTA+AGG | - | chr1.4:85334981-85335000 | MS.gene029365:intron | 35.0% | |
| AGAGTGTAGTGTTTGTTTAG+AGG | - | chr1.4:85334946-85334965 | MS.gene029365:intron | 35.0% | |
| ATGCATCAATAGATTGAGAG+AGG | + | chr1.4:85335869-85335888 | None:intergenic | 35.0% | |
| ATTGAGAGAGGAAGATAAAG+AGG | + | chr1.4:85335857-85335876 | None:intergenic | 35.0% | |
| GAATTTCCAATGCTTATTGC+TGG | - | chr1.4:85335893-85335912 | MS.gene029365:intron | 35.0% | |
| TAATTCATTATTTCCCCCCT+GGG | - | chr1.4:85335964-85335983 | MS.gene029365:intron | 35.0% | |
| TACACTCTTTCACATTTGCA+AGG | + | chr1.4:85334934-85334953 | None:intergenic | 35.0% | |
| TAGGAACTTCAAATCTTGCA+AGG | - | chr1.4:85334239-85334258 | MS.gene029365:intron | 35.0% | |
| TCCAAATATAGCCTCTTTCA+AGG | + | chr1.4:85333634-85333653 | None:intergenic | 35.0% | |
| TCCTTGAAAGAGGCTATATT+TGG | - | chr1.4:85333630-85333649 | MS.gene029365:intron | 35.0% | |
| TGAGATCAAAAGAGTGAACA+TGG | + | chr1.4:85333991-85334010 | None:intergenic | 35.0% | |
| TTAATTCATTATTTCCCCCC+TGG | - | chr1.4:85335963-85335982 | MS.gene029365:intron | 35.0% | |
| TTACGACGTTCTTATTCTTC+GGG | - | chr1.4:85333595-85333614 | MS.gene029365:intron | 35.0% | |
| TTCATCATTCGACTGAAGAA+AGG | + | chr1.4:85335444-85335463 | None:intergenic | 35.0% | |
| TTTATTACTTCCTACAACCC+AGG | + | chr1.4:85336033-85336052 | None:intergenic | 35.0% | |
| ! | GTTCTGTTGTTGTAGTTCTA+AGG | + | chr1.4:85334155-85334174 | None:intergenic | 35.0% |
| ! | GTTTTCTAACTATCCTTACC+TGG | + | chr1.4:85334629-85334648 | None:intergenic | 35.0% |
| !! | TCACCCTTTTAAAGAGTCTA+TGG | - | chr1.4:85335601-85335620 | MS.gene029365:intron | 35.0% |
| !!! | TAAGACTTTTTTTGCAGCTG+CGG | - | chr1.4:85332574-85332593 | MS.gene029365:CDS | 35.0% |
| !!! | TGGCCGTTTATGTTTTTTTG+TGG | + | chr1.4:85334443-85334462 | None:intergenic | 35.0% |
| AAACAAATGCAGGCAACCAA+AGG | + | chr1.4:85334868-85334887 | None:intergenic | 40.0% | |
| ACAACCCATACAAACAAGCT+TGG | + | chr1.4:85336089-85336108 | None:intergenic | 40.0% | |
| ACTGCAAGTACGTGTTGAAA+AGG | + | chr1.4:85335700-85335719 | None:intergenic | 40.0% | |
| ATGGTGTCTAAGGACTAAGT+TGG | - | chr1.4:85335987-85336006 | MS.gene029365:intron | 40.0% | |
| ATTCCACCAGCAATAAGCAT+TGG | + | chr1.4:85335902-85335921 | None:intergenic | 40.0% | |
| CGACTGAAGAAAGGAATGAT+TGG | + | chr1.4:85335435-85335454 | None:intergenic | 40.0% | |
| CTTGTTACAGTGGTTGAGAT+TGG | - | chr1.4:85335529-85335548 | MS.gene029365:intron | 40.0% | |
| GATAGAAAATGCCTGCAGAA+TGG | + | chr1.4:85334577-85334596 | None:intergenic | 40.0% | |
| GATCAAAAGAGTGAACATGG+AGG | + | chr1.4:85333988-85334007 | None:intergenic | 40.0% | |
| GTATTCAACATTTGGCAGGT+TGG | - | chr1.4:85335373-85335392 | MS.gene029365:intron | 40.0% | |
| TATCAAACAGGAAGGGCTAA+TGG | - | chr1.4:85333015-85333034 | MS.gene029365:intron | 40.0% | |
| TATGCAGATCTCTCGTAGTT+GGG | - | chr1.4:85333563-85333582 | MS.gene029365:CDS | 40.0% | |
| TCAACACGTACTTGCAGTAA+CGG | - | chr1.4:85335702-85335721 | MS.gene029365:intron | 40.0% | |
| TGCTGTATTCAACATTTGGC+AGG | - | chr1.4:85335369-85335388 | MS.gene029365:intron | 40.0% | |
| TGTACTTCTGCTGCTGTTAT+CGG | - | chr1.4:85335067-85335086 | MS.gene029365:intron | 40.0% | |
| TGTTATCTTATCGTGACTCG+TGG | - | chr1.4:85333409-85333428 | MS.gene029365:intron | 40.0% | |
| TTAAGTGTAGGCACATGGAA+TGG | + | chr1.4:85335834-85335853 | None:intergenic | 40.0% | |
| TTATGCAGATCTCTCGTAGT+TGG | - | chr1.4:85333562-85333581 | MS.gene029365:CDS | 40.0% | |
| TTCATCTGCAGCTAAACCTA+TGG | + | chr1.4:85334736-85334755 | None:intergenic | 40.0% | |
| TTCTCTCTGTTCTTGTTGGT+TGG | - | chr1.4:85333298-85333317 | MS.gene029365:intron | 40.0% | |
| TTCTTACTATCAAAGCTGCG+AGG | + | chr1.4:85333152-85333171 | None:intergenic | 40.0% | |
| TTTCCAATGCTTATTGCTGG+TGG | - | chr1.4:85335896-85335915 | MS.gene029365:intron | 40.0% | |
| TTTCTCTCCCATCTTGTTAC+AGG | - | chr1.4:85334477-85334496 | MS.gene029365:intron | 40.0% | |
| TTTGTTCAGTTGGCTACCAT+AGG | - | chr1.4:85334717-85334736 | MS.gene029365:CDS | 40.0% | |
| ! | AAGAGAGTTTTCCCTTGACA+GGG | - | chr1.4:85335766-85335785 | MS.gene029365:intron | 40.0% |
| ! | ACGTTCTTATTCTTCGGGTT+TGG | - | chr1.4:85333600-85333619 | MS.gene029365:intron | 40.0% |
| ! | AGAATGAAAGCTTTGACCCA+AGG | + | chr1.4:85335579-85335598 | None:intergenic | 40.0% |
| ! | AGCAAACATGCTTGTTACAG+TGG | - | chr1.4:85335519-85335538 | MS.gene029365:CDS | 40.0% |
| ! | TATTCTTCGGGTTTGGACTT+TGG | - | chr1.4:85333607-85333626 | MS.gene029365:intron | 40.0% |
| ! | TCTCTCTGTTCTTGTTGGTT+GGG | - | chr1.4:85333299-85333318 | MS.gene029365:intron | 40.0% |
| !! | TGCAGTAACGGATTCTCTAT+GGG | - | chr1.4:85335714-85335733 | MS.gene029365:intron | 40.0% |
| !! | TTGCAGTAACGGATTCTCTA+TGG | - | chr1.4:85335713-85335732 | MS.gene029365:intron | 40.0% |
| !!! | TGGTGAGCATTCTTTTTTGC+CGG | - | chr1.4:85333334-85333353 | MS.gene029365:intron | 40.0% |
| AAGATTGGGGTGAGGTAGAA+GGG | - | chr1.4:85336055-85336074 | MS.gene029365:CDS | 45.0% | |
| AGAGGTTAAGTGTAGGCACA+TGG | + | chr1.4:85335839-85335858 | None:intergenic | 45.0% | |
| AGAGTGTGATATCTGAGCTG+AGG | + | chr1.4:85332654-85332673 | None:intergenic | 45.0% | |
| AGATGAAAACCCATTTGGCG+TGG | - | chr1.4:85334749-85334768 | MS.gene029365:intron | 45.0% | |
| ATCACCGATCTCAGAGAGAA+CGG | + | chr1.4:85332555-85332574 | None:intergenic | 45.0% | |
| ATGACCGCACATCGTCTTAA+GGG | + | chr1.4:85334040-85334059 | None:intergenic | 45.0% | |
| ATTTCACACAACCCCTGTCA+AGG | + | chr1.4:85335781-85335800 | None:intergenic | 45.0% | |
| CCTGCAGAATGGAAGTGAAA+AGG | + | chr1.4:85334566-85334585 | None:intergenic | 45.0% | |
| GAAGTTGAAGCTGAACTGGT+TGG | - | chr1.4:85333791-85333810 | MS.gene029365:intron | 45.0% | |
| GCTGCAGATGAAAACCCATT+TGG | - | chr1.4:85334744-85334763 | MS.gene029365:intron | 45.0% | |
| TATGACCGCACATCGTCTTA+AGG | + | chr1.4:85334041-85334060 | None:intergenic | 45.0% | |
| TGGACTTTGGTCCTTGAAAG+AGG | - | chr1.4:85333620-85333639 | MS.gene029365:intron | 45.0% | |
| TTGGAGGGATTCTGTGAGTT+TGG | - | chr1.4:85334775-85334794 | MS.gene029365:intron | 45.0% | |
| TTTCACACAACCCCTGTCAA+GGG | + | chr1.4:85335780-85335799 | None:intergenic | 45.0% | |
| ! | AGAGAGTTTTCCCTTGACAG+GGG | - | chr1.4:85335767-85335786 | MS.gene029365:intron | 45.0% |
| ! | ATGAAAGCTTTGACCCAAGG+TGG | + | chr1.4:85335576-85335595 | None:intergenic | 45.0% |
| ! | CCTTTTCACTTCCATTCTGC+AGG | - | chr1.4:85334563-85334582 | MS.gene029365:intron | 45.0% |
| ! | GAAGAGAGTTTTCCCTTGAC+AGG | - | chr1.4:85335765-85335784 | MS.gene029365:intron | 45.0% |
| ! | TTTGATGGACAGGGAATCAG+AGG | - | chr1.4:85333760-85333779 | MS.gene029365:intron | 45.0% |
| !! | ATGACCGTTCTCTCTGAGAT+CGG | - | chr1.4:85332548-85332567 | MS.gene029365:CDS | 45.0% |
| AACCCATTTGGCGTGGTTCT+TGG | - | chr1.4:85334756-85334775 | MS.gene029365:intron | 50.0% | |
| AAGAGCTTGCCTTTCCACCT+TGG | - | chr1.4:85335559-85335578 | MS.gene029365:intron | 50.0% | |
| ACTGTGAAAATGACCCTGCC+TGG | - | chr1.4:85336012-85336031 | MS.gene029365:intron | 50.0% | |
| ACTTCTGCTGCTGTTATCGG+AGG | - | chr1.4:85335070-85335089 | MS.gene029365:intron | 50.0% | |
| AGAGCTTGCCTTTCCACCTT+GGG | - | chr1.4:85335560-85335579 | MS.gene029365:intron | 50.0% | |
| AGATTGGGGTGAGGTAGAAG+GGG | - | chr1.4:85336056-85336075 | MS.gene029365:CDS | 50.0% | |
| AGTCCTTAGACACCATCCCA+GGG | + | chr1.4:85335983-85336002 | None:intergenic | 50.0% | |
| ATCTGAGCTGAGGTAGCTTG+AGG | + | chr1.4:85332644-85332663 | None:intergenic | 50.0% | |
| CAAGATTGGGGTGAGGTAGA+AGG | - | chr1.4:85336054-85336073 | MS.gene029365:CDS | 50.0% | |
| CAGTCCCTTAAGACGATGTG+CGG | - | chr1.4:85334033-85334052 | MS.gene029365:CDS | 50.0% | |
| CATTTGGCGTGGTTCTTGGA+GGG | - | chr1.4:85334760-85334779 | MS.gene029365:intron | 50.0% | |
| CGAGGCAACCTGTTAAGACA+AGG | + | chr1.4:85333134-85333153 | None:intergenic | 50.0% | |
| CTCCAAGAACCACGCCAAAT+GGG | + | chr1.4:85334761-85334780 | None:intergenic | 50.0% | |
| CTGTGAAAATGACCCTGCCT+GGG | - | chr1.4:85336013-85336032 | MS.gene029365:intron | 50.0% | |
| CTTCTGCTGCTGTTATCGGA+GGG | - | chr1.4:85335071-85335090 | MS.gene029365:intron | 50.0% | |
| GATCTCAGAGAGAACGGTCA+TGG | + | chr1.4:85332549-85332568 | None:intergenic | 50.0% | |
| GGCTGAAGTTGAAGCTGAAC+TGG | - | chr1.4:85333787-85333806 | MS.gene029365:intron | 50.0% | |
| GGGTTGTGCTTGAATGCTTG+AGG | - | chr1.4:85336102-85336121 | MS.gene029365:CDS | 50.0% | |
| TACTTCCTACAACCCAGGCA+GGG | + | chr1.4:85336028-85336047 | None:intergenic | 50.0% | |
| TAGTCCTTAGACACCATCCC+AGG | + | chr1.4:85335984-85336003 | None:intergenic | 50.0% | |
| TCATTATTTCCCCCCTGGGA+TGG | - | chr1.4:85335968-85335987 | MS.gene029365:intron | 50.0% | |
| TTACTTCCTACAACCCAGGC+AGG | + | chr1.4:85336029-85336048 | None:intergenic | 50.0% | |
| ! | AGCTTTGACCCAAGGTGGAA+AGG | + | chr1.4:85335571-85335590 | None:intergenic | 50.0% |
| ! | ATTTGGCAGGTTGGACTCTC+AGG | - | chr1.4:85335382-85335401 | MS.gene029365:intron | 50.0% |
| ! | GGTGGAAAGGCAAGCTCTTT+TGG | + | chr1.4:85335558-85335577 | None:intergenic | 50.0% |
| !! | CTGTTAAGACAAGGCGTCGT+GGG | + | chr1.4:85333125-85333144 | None:intergenic | 50.0% |
| AATGACCCTGCCTGGGTTGT+AGG | - | chr1.4:85336020-85336039 | MS.gene029365:intron | 55.0% | |
| CCACGACGCCTTGTCTTAAC+AGG | - | chr1.4:85333123-85333142 | MS.gene029365:intron | 55.0% | |
| CCATTTGGCGTGGTTCTTGG+AGG | - | chr1.4:85334759-85334778 | MS.gene029365:intron | 55.0% | |
| CCTCCAAGAACCACGCCAAA+TGG | + | chr1.4:85334762-85334781 | None:intergenic | 55.0% | |
| GGACAGGGAATCAGAGGAGT+TGG | - | chr1.4:85333766-85333785 | MS.gene029365:intron | 55.0% | |
| GTCCTTAGACACCATCCCAG+GGG | + | chr1.4:85335982-85336001 | None:intergenic | 55.0% | |
| TCCTTAGACACCATCCCAGG+GGG | + | chr1.4:85335981-85336000 | None:intergenic | 55.0% | |
| TGAATGGGGTGACAAGAGCC+AGG | - | chr1.4:85334608-85334627 | MS.gene029365:intron | 55.0% | |
| TGGTTGGGCTGCTCCAAATC+TGG | - | chr1.4:85333314-85333333 | MS.gene029365:intron | 55.0% | |
| !! | CCTGTTAAGACAAGGCGTCG+TGG | + | chr1.4:85333126-85333145 | None:intergenic | 55.0% |
| CCTTAGACACCATCCCAGGG+GGG | + | chr1.4:85335980-85335999 | None:intergenic | 60.0% | |
| GGGGTGACAAGAGCCAGGTA+AGG | - | chr1.4:85334613-85334632 | MS.gene029365:intron | 60.0% | |
| ! | TGGCAGGTTGGACTCTCAGG+TGG | - | chr1.4:85335385-85335404 | MS.gene029365:intron | 60.0% |
| CCCCCCTGGGATGGTGTCTA+AGG | - | chr1.4:85335977-85335996 | MS.gene029365:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 85332527 | 85336122 | 85332527 | ID=MS.gene029365 |
| chr1.4 | mRNA | 85332527 | 85336122 | 85332527 | ID=MS.gene029365.t1;Parent=MS.gene029365 |
| chr1.4 | exon | 85336054 | 85336122 | 85336054 | ID=MS.gene029365.t1.exon1;Parent=MS.gene029365.t1 |
| chr1.4 | CDS | 85336054 | 85336122 | 85336054 | ID=cds.MS.gene029365.t1;Parent=MS.gene029365.t1 |
| chr1.4 | exon | 85335485 | 85335544 | 85335485 | ID=MS.gene029365.t1.exon2;Parent=MS.gene029365.t1 |
| chr1.4 | CDS | 85335485 | 85335544 | 85335485 | ID=cds.MS.gene029365.t1;Parent=MS.gene029365.t1 |
| chr1.4 | exon | 85335314 | 85335361 | 85335314 | ID=MS.gene029365.t1.exon3;Parent=MS.gene029365.t1 |
| chr1.4 | CDS | 85335314 | 85335361 | 85335314 | ID=cds.MS.gene029365.t1;Parent=MS.gene029365.t1 |
| chr1.4 | exon | 85334991 | 85335079 | 85334991 | ID=MS.gene029365.t1.exon4;Parent=MS.gene029365.t1 |
| chr1.4 | CDS | 85334991 | 85335079 | 85334991 | ID=cds.MS.gene029365.t1;Parent=MS.gene029365.t1 |
| chr1.4 | exon | 85334841 | 85334877 | 85334841 | ID=MS.gene029365.t1.exon5;Parent=MS.gene029365.t1 |
| chr1.4 | CDS | 85334841 | 85334877 | 85334841 | ID=cds.MS.gene029365.t1;Parent=MS.gene029365.t1 |
| chr1.4 | exon | 85334714 | 85334761 | 85334714 | ID=MS.gene029365.t1.exon6;Parent=MS.gene029365.t1 |
| chr1.4 | CDS | 85334714 | 85334761 | 85334714 | ID=cds.MS.gene029365.t1;Parent=MS.gene029365.t1 |
| chr1.4 | exon | 85334151 | 85334219 | 85334151 | ID=MS.gene029365.t1.exon7;Parent=MS.gene029365.t1 |
| chr1.4 | CDS | 85334151 | 85334219 | 85334151 | ID=cds.MS.gene029365.t1;Parent=MS.gene029365.t1 |
| chr1.4 | exon | 85334020 | 85334064 | 85334020 | ID=MS.gene029365.t1.exon8;Parent=MS.gene029365.t1 |
| chr1.4 | CDS | 85334020 | 85334064 | 85334020 | ID=cds.MS.gene029365.t1;Parent=MS.gene029365.t1 |
| chr1.4 | exon | 85333862 | 85333923 | 85333862 | ID=MS.gene029365.t1.exon9;Parent=MS.gene029365.t1 |
| chr1.4 | CDS | 85333862 | 85333923 | 85333862 | ID=cds.MS.gene029365.t1;Parent=MS.gene029365.t1 |
| chr1.4 | exon | 85333523 | 85333595 | 85333523 | ID=MS.gene029365.t1.exon10;Parent=MS.gene029365.t1 |
| chr1.4 | CDS | 85333523 | 85333595 | 85333523 | ID=cds.MS.gene029365.t1;Parent=MS.gene029365.t1 |
| chr1.4 | exon | 85332527 | 85332607 | 85332527 | ID=MS.gene029365.t1.exon11;Parent=MS.gene029365.t1 |
| chr1.4 | CDS | 85332527 | 85332607 | 85332527 | ID=cds.MS.gene029365.t1;Parent=MS.gene029365.t1 |
| Gene Sequence |
| Protein sequence |
