Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76270.t1 | XP_013470223.1 | 97.4 | 227 | 6 | 0 | 1 | 227 | 1 | 227 | 5.40E-115 | 423.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76270.t1 | Q9SX28 | 75.4 | 228 | 55 | 1 | 1 | 228 | 1 | 227 | 2.0e-89 | 330.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76270.t1 | I3SF71 | 97.4 | 227 | 6 | 0 | 1 | 227 | 1 | 227 | 3.9e-115 | 423.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050119 | MS.gene76270 | 0.805108 | 1.57E-49 | -1.69E-46 |
| MS.gene057750 | MS.gene76270 | 0.802234 | 6.18E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene76270 | 0.801105 | 1.05E-48 | -1.69E-46 |
| MS.gene059128 | MS.gene76270 | 0.808714 | 2.70E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76270 | MS.gene029365 | PPI |
| MS.gene029366 | MS.gene76270 | PPI |
| MS.gene76270 | MS.gene065100 | PPI |
| MS.gene76270 | MS.gene029368 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76270.t1 | MTR_1g111390 | 97.357 | 227 | 6 | 0 | 1 | 227 | 1 | 227 | 4.71e-160 | 442 |
| MS.gene76270.t1 | MTR_7g079850 | 42.273 | 220 | 114 | 1 | 4 | 223 | 72 | 278 | 2.69e-50 | 165 |
| MS.gene76270.t1 | MTR_1g046730 | 40.000 | 225 | 113 | 6 | 7 | 223 | 151 | 361 | 1.11e-36 | 132 |
| MS.gene76270.t1 | MTR_5g009810 | 32.883 | 222 | 123 | 4 | 7 | 219 | 138 | 342 | 2.04e-23 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76270.t1 | AT1G25520 | 76.419 | 229 | 53 | 1 | 1 | 228 | 1 | 229 | 9.99e-116 | 330 |
| MS.gene76270.t1 | AT1G68650 | 75.439 | 228 | 55 | 1 | 1 | 228 | 1 | 227 | 5.98e-114 | 325 |
| MS.gene76270.t1 | AT5G36290 | 40.625 | 224 | 115 | 2 | 3 | 223 | 80 | 288 | 1.73e-48 | 161 |
| MS.gene76270.t1 | AT5G36290 | 40.625 | 224 | 115 | 2 | 3 | 223 | 80 | 288 | 1.73e-48 | 161 |
| MS.gene76270.t1 | AT4G13590 | 39.732 | 224 | 115 | 5 | 7 | 223 | 145 | 355 | 3.55e-39 | 139 |
| MS.gene76270.t1 | AT4G13590 | 39.732 | 224 | 115 | 5 | 7 | 223 | 145 | 355 | 3.99e-39 | 138 |
| MS.gene76270.t1 | AT1G64150 | 32.766 | 235 | 117 | 4 | 1 | 219 | 152 | 361 | 6.62e-24 | 98.2 |
Find 51 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTGAAAGAGGCTATATT+TGG | 0.236172 | 1.1:+78623603 | MS.gene76270:CDS |
| TTTCTCTCCCATCTTGTTAC+AGG | 0.249070 | 1.1:+78624451 | MS.gene76270:CDS |
| TTCTCTCTGTTCTTGTTGGT+TGG | 0.281934 | 1.1:+78623271 | MS.gene76270:CDS |
| AACCCATTTGGCGTGGTTCT+TGG | 0.294089 | 1.1:+78624730 | MS.gene76270:CDS |
| TGTACTTCTGCTGCTGTTAT+CGG | 0.295744 | 1.1:+78625041 | MS.gene76270:CDS |
| AAAAGAATGCTCACCAGATT+TGG | 0.305070 | 1.1:-78623300 | None:intergenic |
| ATTACGACGTTCTTATTCTT+CGG | 0.306446 | 1.1:+78623567 | MS.gene76270:CDS |
| ACAATTCTCTCTGTTCTTGT+TGG | 0.313902 | 1.1:+78623267 | MS.gene76270:CDS |
| TGGTTGGGCTGCTCCAAATC+TGG | 0.336034 | 1.1:+78623287 | MS.gene76270:CDS |
| CCACGACGCCTTGTCTTAAC+AGG | 0.342518 | 1.1:+78623093 | MS.gene76270:CDS |
| TCTCTCTGTTCTTGTTGGTT+GGG | 0.349163 | 1.1:+78623272 | MS.gene76270:CDS |
| ATTTGGCAGGTTGGACTCTC+AGG | 0.356838 | 1.1:+78625357 | MS.gene76270:intron |
| TTACGACGTTCTTATTCTTC+GGG | 0.364759 | 1.1:+78623568 | MS.gene76270:CDS |
| ATTGTAATTAGGACAAAGAT+TGG | 0.389163 | 1.1:+78623850 | MS.gene76270:intron |
| TATTCTTCGGGTTTGGACTT+TGG | 0.392999 | 1.1:+78623580 | MS.gene76270:CDS |
| CCTCCAAGAACCACGCCAAA+TGG | 0.394458 | 1.1:-78624733 | None:intergenic |
| ACGTTCTTATTCTTCGGGTT+TGG | 0.403780 | 1.1:+78623573 | MS.gene76270:CDS |
| GGCTGAAGTTGAAGCTGAAC+TGG | 0.424673 | 1.1:+78623760 | MS.gene76270:CDS |
| TCCAAATATAGCCTCTTTCA+AGG | 0.428412 | 1.1:-78623604 | None:intergenic |
| AGCTACAAAAGATACCAAAA+AGG | 0.435268 | 1.1:+78623887 | MS.gene76270:CDS |
| GCTGCAGATGAAAACCCATT+TGG | 0.436487 | 1.1:+78624718 | MS.gene76270:CDS |
| TTATGCAGATCTCTCGTAGT+TGG | 0.455915 | 1.1:+78623535 | MS.gene76270:intron |
| TATGCAGATCTCTCGTAGTT+GGG | 0.473253 | 1.1:+78623536 | MS.gene76270:intron |
| CGACTGAAGAAAGGAATGAT+TGG | 0.477906 | 1.1:-78625407 | None:intergenic |
| CCATTTGGCGTGGTTCTTGG+AGG | 0.480629 | 1.1:+78624733 | MS.gene76270:CDS |
| TTCATCTGCAGCTAAACCTA+TGG | 0.483168 | 1.1:-78624707 | None:intergenic |
| ATTTATTACCTGTAACAAGA+TGG | 0.486365 | 1.1:-78624459 | None:intergenic |
| CATTTGGCGTGGTTCTTGGA+GGG | 0.488586 | 1.1:+78624734 | MS.gene76270:CDS |
| TTTGTTCAGTTGGCTACCAT+AGG | 0.495409 | 1.1:+78624691 | MS.gene76270:intron |
| TGGACTTTGGTCCTTGAAAG+AGG | 0.497549 | 1.1:+78623593 | MS.gene76270:CDS |
| CTCCAAGAACCACGCCAAAT+GGG | 0.499798 | 1.1:-78624732 | None:intergenic |
| AAATATGAGCTCAATTGTTC+AGG | 0.500477 | 1.1:+78622398 | None:intergenic |
| TTTATTACCTGTAACAAGAT+GGG | 0.502150 | 1.1:-78624458 | None:intergenic |
| GGACAGGGAATCAGAGGAGT+TGG | 0.506438 | 1.1:+78623739 | MS.gene76270:intron |
| TTCATCATTCGACTGAAGAA+AGG | 0.517530 | 1.1:-78625416 | None:intergenic |
| CTGTTAAGACAAGGCGTCGT+GGG | 0.520280 | 1.1:-78623092 | None:intergenic |
| AAAGAGGCTATATTTGGAGA+AGG | 0.530172 | 1.1:+78623609 | MS.gene76270:CDS |
| AAGAGGCTATATTTGGAGAA+GGG | 0.538449 | 1.1:+78623610 | MS.gene76270:CDS |
| TGAATGGGGTGACAAGAGCC+AGG | 0.563011 | 1.1:+78624582 | MS.gene76270:CDS |
| TAATTAGGACAAAGATTGGA+AGG | 0.578900 | 1.1:+78623854 | MS.gene76270:intron |
| TTTGATGGACAGGGAATCAG+AGG | 0.584441 | 1.1:+78623733 | MS.gene76270:intron |
| ACTTCTGCTGCTGTTATCGG+AGG | 0.588680 | 1.1:+78625044 | MS.gene76270:CDS |
| GATCTCAGAGAGAACGGTCA+TGG | 0.590501 | 1.1:-78622523 | None:intergenic |
| ATGACCGTTCTCTCTGAGAT+CGG | 0.592001 | 1.1:+78622525 | MS.gene76270:CDS |
| CCTGTTAAGACAAGGCGTCG+TGG | 0.599776 | 1.1:-78623093 | None:intergenic |
| CGAGGCAACCTGTTAAGACA+AGG | 0.611382 | 1.1:-78623101 | None:intergenic |
| ATCACCGATCTCAGAGAGAA+CGG | 0.615665 | 1.1:-78622529 | None:intergenic |
| TGGCAGGTTGGACTCTCAGG+TGG | 0.615800 | 1.1:+78625360 | MS.gene76270:intron |
| CTTCTGCTGCTGTTATCGGA+GGG | 0.621384 | 1.1:+78625045 | MS.gene76270:CDS |
| AGATGAAAACCCATTTGGCG+TGG | 0.640914 | 1.1:+78624723 | MS.gene76270:CDS |
| TTCTTACTATCAAAGCTGCG+AGG | 0.719466 | 1.1:-78623119 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTAGTTGTTTATTAC+AGG | + | chr1.1:78625006-78625025 | MS.gene76270:intron | 15.0% |
| !! | ATTATTAGTTGTTTATTACA+GGG | + | chr1.1:78625007-78625026 | MS.gene76270:intron | 15.0% |
| !! | GAAATTACTTGAATTAAAAA+AGG | - | chr1.1:78625175-78625194 | None:intergenic | 15.0% |
| !!! | TTTCATTTTCTTGTATATAT+TGG | + | chr1.1:78624626-78624645 | MS.gene76270:intron | 15.0% |
| !! | AAAAACAAAGATAACAAATC+TGG | - | chr1.1:78623189-78623208 | None:intergenic | 20.0% |
| !! | AAACAGAAAATGAAAAAATG+AGG | - | chr1.1:78622448-78622467 | None:intergenic | 20.0% |
| !! | AACTTATTCATACTTTGAAT+AGG | + | chr1.1:78624194-78624213 | MS.gene76270:intron | 20.0% |
| !! | AATAGCATGAAAATCAATAA+GGG | - | chr1.1:78623517-78623536 | None:intergenic | 20.0% |
| !! | AGATAACAAATATATCAAAC+AGG | + | chr1.1:78622968-78622987 | MS.gene76270:intron | 20.0% |
| !! | AGTAAATGAAAAAGAAGTAA+TGG | + | chr1.1:78625218-78625237 | MS.gene76270:intron | 20.0% |
| !! | ATCAAAGAAAAAAGATAATG+CGG | - | chr1.1:78623489-78623508 | None:intergenic | 20.0% |
| !! | ATTACTTGAATTAAAAAAGG+TGG | - | chr1.1:78625172-78625191 | None:intergenic | 20.0% |
| !! | ATTCAGTTACAATTCATTAT+TGG | + | chr1.1:78622757-78622776 | MS.gene76270:intron | 20.0% |
| !! | CAAATATATCTTTAACCATT+TGG | - | chr1.1:78624100-78624119 | None:intergenic | 20.0% |
| !! | CAAATGGTTAAAGATATATT+TGG | + | chr1.1:78624098-78624117 | MS.gene76270:intron | 20.0% |
| !! | CTTGTAAAATTTCGAATTAT+AGG | + | chr1.1:78623239-78623258 | MS.gene76270:intron | 20.0% |
| !! | GAGTTTCAATTTCAAATATT+AGG | + | chr1.1:78622814-78622833 | MS.gene76270:intron | 20.0% |
| !! | TAATAGCATGAAAATCAATA+AGG | - | chr1.1:78623518-78623537 | None:intergenic | 20.0% |
| !! | TATGACAAATAATGTGTATT+AGG | - | chr1.1:78624376-78624395 | None:intergenic | 20.0% |
| !! | TTAAAAAAGGTGGAAAAAAA+AGG | - | chr1.1:78625162-78625181 | None:intergenic | 20.0% |
| !! | TTATTAGTTGTTTATTACAG+GGG | + | chr1.1:78625008-78625027 | MS.gene76270:intron | 20.0% |
| !! | TTCATTAGAAATGTATAATC+AGG | - | chr1.1:78623662-78623681 | None:intergenic | 20.0% |
| !!! | AGGTATTATTTTTACCTTTT+TGG | - | chr1.1:78623904-78623923 | None:intergenic | 20.0% |
| !!! | AGTAGACAAAATATTTTCTA+TGG | - | chr1.1:78624059-78624078 | None:intergenic | 20.0% |
| !!! | ATCTCATTTTGATTTTGATT+AGG | + | chr1.1:78622482-78622501 | MS.gene76270:intron | 20.0% |
| !!! | CATTATTTGTCATATTTTTC+AGG | + | chr1.1:78624382-78624401 | MS.gene76270:intron | 20.0% |
| !!! | CTATAATTCGAAATTTTACA+AGG | - | chr1.1:78623241-78623260 | None:intergenic | 20.0% |
| !!! | GGAATTCTTTTTATTGTTTT+TGG | + | chr1.1:78625381-78625400 | MS.gene76270:CDS | 20.0% |
| !!! | TAACTTTTTTTTTGTTCAGT+TGG | + | chr1.1:78624681-78624700 | MS.gene76270:intron | 20.0% |
| !!! | TATCTTTGTTTTTAAAGTAG+TGG | + | chr1.1:78623196-78623215 | MS.gene76270:intron | 20.0% |
| !!! | TCTCATTTTGATTTTGATTA+GGG | + | chr1.1:78622483-78622502 | MS.gene76270:intron | 20.0% |
| ! | AAAAAGGTGACAAAAACATA+TGG | - | chr1.1:78625146-78625165 | None:intergenic | 25.0% |
| ! | AAATGTTGAATACAGCATTT+AGG | - | chr1.1:78625341-78625360 | None:intergenic | 25.0% |
| ! | AACAAATATATCAAACAGGA+AGG | + | chr1.1:78622972-78622991 | MS.gene76270:intron | 25.0% |
| ! | AAGTGAAAAGGAATCAAATT+TGG | - | chr1.1:78624528-78624547 | None:intergenic | 25.0% |
| ! | AATAGATGCAAACAATTTCT+AGG | + | chr1.1:78625253-78625272 | MS.gene76270:intron | 25.0% |
| ! | AATGAGGTGAAATAATTGAT+AGG | - | chr1.1:78622432-78622451 | None:intergenic | 25.0% |
| ! | ACAAATATATCAAACAGGAA+GGG | + | chr1.1:78622973-78622992 | MS.gene76270:intron | 25.0% |
| ! | ATGCCACAAAAAAACATAAA+CGG | + | chr1.1:78624411-78624430 | MS.gene76270:CDS | 25.0% |
| ! | ATTGTAATTAGGACAAAGAT+TGG | + | chr1.1:78623850-78623869 | MS.gene76270:intron | 25.0% |
| ! | ATTTATTACCTGTAACAAGA+TGG | - | chr1.1:78624462-78624481 | None:intergenic | 25.0% |
| ! | CATAATTCCTAAAATTGAAG+GGG | + | chr1.1:78622862-78622881 | MS.gene76270:intron | 25.0% |
| ! | GAAAATAGTCATAATCTTGA+AGG | - | chr1.1:78624820-78624839 | None:intergenic | 25.0% |
| ! | GAATTCAGTTAAATATTGCA+TGG | - | chr1.1:78624496-78624515 | None:intergenic | 25.0% |
| ! | GAGAAAAACTGAGATAAAAA+TGG | - | chr1.1:78624437-78624456 | None:intergenic | 25.0% |
| ! | GCATAATTCCTAAAATTGAA+GGG | + | chr1.1:78622861-78622880 | MS.gene76270:intron | 25.0% |
| ! | TAAATGCTGTATTCAACATT+TGG | + | chr1.1:78625340-78625359 | MS.gene76270:intron | 25.0% |
| ! | TATTAGTTGTTTATTACAGG+GGG | + | chr1.1:78625009-78625028 | MS.gene76270:intron | 25.0% |
| ! | TCAAAGAAAAAAGATAATGC+GGG | - | chr1.1:78623488-78623507 | None:intergenic | 25.0% |
| ! | TCAGCATGAGTATATATTAT+AGG | + | chr1.1:78623442-78623461 | MS.gene76270:intron | 25.0% |
| ! | TGCATAATTCCTAAAATTGA+AGG | + | chr1.1:78622860-78622879 | MS.gene76270:intron | 25.0% |
| ! | TGTGATATTTGATTACCAAA+TGG | + | chr1.1:78624082-78624101 | MS.gene76270:intron | 25.0% |
| ! | TTCGTAATAAATTCGTTTGA+TGG | + | chr1.1:78623718-78623737 | MS.gene76270:intron | 25.0% |
| ! | TTGAGGTGAGAAAATAAATA+AGG | - | chr1.1:78622600-78622619 | None:intergenic | 25.0% |
| ! | TTGTCCTAATTACAATACAA+GGG | - | chr1.1:78623846-78623865 | None:intergenic | 25.0% |
| ! | TTTATTACCTGTAACAAGAT+GGG | - | chr1.1:78624461-78624480 | None:intergenic | 25.0% |
| ! | TTTGTCCTAATTACAATACA+AGG | - | chr1.1:78623847-78623866 | None:intergenic | 25.0% |
| !! | AGATTATGACTATTTTCCTT+TGG | + | chr1.1:78624823-78624842 | MS.gene76270:intron | 25.0% |
| !!! | GCATTTTCTATCACTTTTTT+TGG | + | chr1.1:78624559-78624578 | MS.gene76270:CDS | 25.0% |
| !!! | GTTGGTTTTTCAACATTATT+TGG | + | chr1.1:78623782-78623801 | MS.gene76270:intron | 25.0% |
| !!! | TATCACTTTTTTTGGTGAAT+GGG | + | chr1.1:78624567-78624586 | MS.gene76270:CDS | 25.0% |
| !!! | TGAATAGTTATTGAGTTGAT+TGG | - | chr1.1:78622691-78622710 | None:intergenic | 25.0% |
| AAAGATTGGAAGGCTAAAAA+TGG | + | chr1.1:78623864-78623883 | MS.gene76270:CDS | 30.0% | |
| AACACCCTTGTATTGTAATT+AGG | + | chr1.1:78623839-78623858 | MS.gene76270:intron | 30.0% | |
| AGCTACAAAAGATACCAAAA+AGG | + | chr1.1:78623887-78623906 | MS.gene76270:CDS | 30.0% | |
| ATTACGACGTTCTTATTCTT+CGG | + | chr1.1:78623567-78623586 | MS.gene76270:CDS | 30.0% | |
| ATTCTAATTTACCACACTAC+TGG | + | chr1.1:78625288-78625307 | MS.gene76270:intron | 30.0% | |
| CAAATCTGGAAAAGAAAGAA+AGG | - | chr1.1:78623175-78623194 | None:intergenic | 30.0% | |
| GTATAATCAGGTTAAGATGA+GGG | - | chr1.1:78623650-78623669 | None:intergenic | 30.0% | |
| GTTAATGAAGAAACAAATGC+AGG | - | chr1.1:78624852-78624871 | None:intergenic | 30.0% | |
| GTTTCTTGAATATCTATGCT+AGG | + | chr1.1:78624158-78624177 | MS.gene76270:intron | 30.0% | |
| TAAGAAATTTGTAGCACCTT+AGG | - | chr1.1:78624974-78624993 | None:intergenic | 30.0% | |
| TAATTAGGACAAAGATTGGA+AGG | + | chr1.1:78623854-78623873 | MS.gene76270:intron | 30.0% | |
| TGATGCTTATTTCAAGATAC+TGG | + | chr1.1:78623059-78623078 | MS.gene76270:intron | 30.0% | |
| TGCTACAAATTTCTTAGAAG+AGG | + | chr1.1:78624978-78624997 | MS.gene76270:intron | 30.0% | |
| TGTATAATCAGGTTAAGATG+AGG | - | chr1.1:78623651-78623670 | None:intergenic | 30.0% | |
| ! | AATAAATTCGTTTGATGGAC+AGG | + | chr1.1:78623723-78623742 | MS.gene76270:intron | 30.0% |
| ! | AGTAGTGCAATTGAAGATTT+TGG | - | chr1.1:78624251-78624270 | None:intergenic | 30.0% |
| ! | ATAAATTCGTTTGATGGACA+GGG | + | chr1.1:78623724-78623743 | MS.gene76270:intron | 30.0% |
| ! | ATCTCAGATTTCTGAAAAAG+TGG | + | chr1.1:78625079-78625098 | MS.gene76270:CDS | 30.0% |
| ! | ATTATCACCCCTTCAATTTT+AGG | - | chr1.1:78622872-78622891 | None:intergenic | 30.0% |
| !! | TGATGATTCTGAAGTTAAAC+CGG | - | chr1.1:78623329-78623348 | None:intergenic | 30.0% |
| !!! | ATCACTTTTTTTGGTGAATG+GGG | + | chr1.1:78624568-78624587 | MS.gene76270:CDS | 30.0% |
| !!! | CTATCACTTTTTTTGGTGAA+TGG | + | chr1.1:78624566-78624585 | MS.gene76270:CDS | 30.0% |
| AAAAGAATGCTCACCAGATT+TGG | - | chr1.1:78623303-78623322 | None:intergenic | 35.0% | |
| AAAGAGGCTATATTTGGAGA+AGG | + | chr1.1:78623609-78623628 | MS.gene76270:CDS | 35.0% | |
| AAGAGGCTATATTTGGAGAA+GGG | + | chr1.1:78623610-78623629 | MS.gene76270:CDS | 35.0% | |
| ACAATTCTCTCTGTTCTTGT+TGG | + | chr1.1:78623267-78623286 | MS.gene76270:CDS | 35.0% | |
| ACAGATATGTCTTATGCCTA+AGG | + | chr1.1:78624955-78624974 | MS.gene76270:intron | 35.0% | |
| AGAGTGTAGTGTTTGTTTAG+AGG | + | chr1.1:78624920-78624939 | MS.gene76270:intron | 35.0% | |
| CAGCACAGATTTAATTAGAC+AGG | - | chr1.1:78623924-78623943 | None:intergenic | 35.0% | |
| CTTAATCTTTACCAGTAGTG+TGG | - | chr1.1:78625302-78625321 | None:intergenic | 35.0% | |
| TACACTCTTTCACATTTGCA+AGG | - | chr1.1:78624908-78624927 | None:intergenic | 35.0% | |
| TAGGAACTTCAAATCTTGCA+AGG | + | chr1.1:78624213-78624232 | MS.gene76270:intron | 35.0% | |
| TCCAAATATAGCCTCTTTCA+AGG | - | chr1.1:78623607-78623626 | None:intergenic | 35.0% | |
| TCCTTGAAAGAGGCTATATT+TGG | + | chr1.1:78623603-78623622 | MS.gene76270:CDS | 35.0% | |
| TGAGATCAAAAGAGTGAACA+TGG | - | chr1.1:78623965-78623984 | None:intergenic | 35.0% | |
| TTACGACGTTCTTATTCTTC+GGG | + | chr1.1:78623568-78623587 | MS.gene76270:CDS | 35.0% | |
| ! | AGAAGTAATGGAGAACTTGA+TGG | + | chr1.1:78625230-78625249 | MS.gene76270:intron | 35.0% |
| ! | GTTCTGTTGTTGTAGTTCTA+AGG | - | chr1.1:78624129-78624148 | None:intergenic | 35.0% |
| ! | GTTTTCTAACTATCCTTACC+TGG | - | chr1.1:78624603-78624622 | None:intergenic | 35.0% |
| !!! | TAAGACTTTTTTTGCAGCTG+CGG | + | chr1.1:78622551-78622570 | MS.gene76270:CDS | 35.0% |
| !!! | TGGCCGTTTATGTTTTTTTG+TGG | - | chr1.1:78624417-78624436 | None:intergenic | 35.0% |
| AAACAAATGCAGGCAACCAA+AGG | - | chr1.1:78624842-78624861 | None:intergenic | 40.0% | |
| CGACTGAAGAAAGGAATGAT+TGG | - | chr1.1:78625410-78625429 | None:intergenic | 40.0% | |
| GATAGAAAATGCCTGCAGAA+TGG | - | chr1.1:78624551-78624570 | None:intergenic | 40.0% | |
| GATCAAAAGAGTGAACATGG+AGG | - | chr1.1:78623962-78623981 | None:intergenic | 40.0% | |
| GTATTCAACATTTGGCAGGT+TGG | + | chr1.1:78625348-78625367 | MS.gene76270:intron | 40.0% | |
| TATCAAACAGGAAGGGCTAA+TGG | + | chr1.1:78622980-78622999 | MS.gene76270:intron | 40.0% | |
| TATGCAGATCTCTCGTAGTT+GGG | + | chr1.1:78623536-78623555 | MS.gene76270:intron | 40.0% | |
| TGCTGTATTCAACATTTGGC+AGG | + | chr1.1:78625344-78625363 | MS.gene76270:intron | 40.0% | |
| TGTACTTCTGCTGCTGTTAT+CGG | + | chr1.1:78625041-78625060 | MS.gene76270:CDS | 40.0% | |
| TGTTATCTTATCGTGACTCG+TGG | + | chr1.1:78623382-78623401 | MS.gene76270:intron | 40.0% | |
| TTATGCAGATCTCTCGTAGT+TGG | + | chr1.1:78623535-78623554 | MS.gene76270:intron | 40.0% | |
| TTCATCTGCAGCTAAACCTA+TGG | - | chr1.1:78624710-78624729 | None:intergenic | 40.0% | |
| TTCTCTCTGTTCTTGTTGGT+TGG | + | chr1.1:78623271-78623290 | MS.gene76270:CDS | 40.0% | |
| TTCTTACTATCAAAGCTGCG+AGG | - | chr1.1:78623122-78623141 | None:intergenic | 40.0% | |
| TTTCTCTCCCATCTTGTTAC+AGG | + | chr1.1:78624451-78624470 | MS.gene76270:CDS | 40.0% | |
| TTTGTTCAGTTGGCTACCAT+AGG | + | chr1.1:78624691-78624710 | MS.gene76270:intron | 40.0% | |
| ! | ACGTTCTTATTCTTCGGGTT+TGG | + | chr1.1:78623573-78623592 | MS.gene76270:CDS | 40.0% |
| ! | TATTCTTCGGGTTTGGACTT+TGG | + | chr1.1:78623580-78623599 | MS.gene76270:CDS | 40.0% |
| ! | TCTCTCTGTTCTTGTTGGTT+GGG | + | chr1.1:78623272-78623291 | MS.gene76270:CDS | 40.0% |
| !!! | TGGTGAGCATTCTTTTTTGC+CGG | + | chr1.1:78623307-78623326 | MS.gene76270:intron | 40.0% |
| AGAGTGTGATATCTGAGCTG+AGG | - | chr1.1:78622627-78622646 | None:intergenic | 45.0% | |
| AGATGAAAACCCATTTGGCG+TGG | + | chr1.1:78624723-78624742 | MS.gene76270:CDS | 45.0% | |
| ATCACCGATCTCAGAGAGAA+CGG | - | chr1.1:78622532-78622551 | None:intergenic | 45.0% | |
| ATGACCGCACATCGTCTTAA+GGG | - | chr1.1:78624014-78624033 | None:intergenic | 45.0% | |
| CCTGCAGAATGGAAGTGAAA+AGG | - | chr1.1:78624540-78624559 | None:intergenic | 45.0% | |
| GAAGTTGAAGCTGAACTGGT+TGG | + | chr1.1:78623764-78623783 | MS.gene76270:intron | 45.0% | |
| GCTGCAGATGAAAACCCATT+TGG | + | chr1.1:78624718-78624737 | MS.gene76270:CDS | 45.0% | |
| TATGACCGCACATCGTCTTA+AGG | - | chr1.1:78624015-78624034 | None:intergenic | 45.0% | |
| TGGACTTTGGTCCTTGAAAG+AGG | + | chr1.1:78623593-78623612 | MS.gene76270:CDS | 45.0% | |
| TTGGAGGGATTCTGTGAGTT+TGG | + | chr1.1:78624749-78624768 | MS.gene76270:intron | 45.0% | |
| ! | CCTTTTCACTTCCATTCTGC+AGG | + | chr1.1:78624537-78624556 | MS.gene76270:intron | 45.0% |
| ! | TTTGATGGACAGGGAATCAG+AGG | + | chr1.1:78623733-78623752 | MS.gene76270:intron | 45.0% |
| !! | ATGACCGTTCTCTCTGAGAT+CGG | + | chr1.1:78622525-78622544 | MS.gene76270:CDS | 45.0% |
| AACCCATTTGGCGTGGTTCT+TGG | + | chr1.1:78624730-78624749 | MS.gene76270:CDS | 50.0% | |
| ACTTCTGCTGCTGTTATCGG+AGG | + | chr1.1:78625044-78625063 | MS.gene76270:CDS | 50.0% | |
| ATCTGAGCTGAGGTAGCTTG+AGG | - | chr1.1:78622617-78622636 | None:intergenic | 50.0% | |
| CAGTCCCTTAAGACGATGTG+CGG | + | chr1.1:78624007-78624026 | MS.gene76270:intron | 50.0% | |
| CATTTGGCGTGGTTCTTGGA+GGG | + | chr1.1:78624734-78624753 | MS.gene76270:CDS | 50.0% | |
| CGAGGCAACCTGTTAAGACA+AGG | - | chr1.1:78623104-78623123 | None:intergenic | 50.0% | |
| CTCCAAGAACCACGCCAAAT+GGG | - | chr1.1:78624735-78624754 | None:intergenic | 50.0% | |
| CTTCTGCTGCTGTTATCGGA+GGG | + | chr1.1:78625045-78625064 | MS.gene76270:CDS | 50.0% | |
| GATCTCAGAGAGAACGGTCA+TGG | - | chr1.1:78622526-78622545 | None:intergenic | 50.0% | |
| GGCTGAAGTTGAAGCTGAAC+TGG | + | chr1.1:78623760-78623779 | MS.gene76270:CDS | 50.0% | |
| ! | ATTTGGCAGGTTGGACTCTC+AGG | + | chr1.1:78625357-78625376 | MS.gene76270:intron | 50.0% |
| !! | CTGTTAAGACAAGGCGTCGT+GGG | - | chr1.1:78623095-78623114 | None:intergenic | 50.0% |
| CCACGACGCCTTGTCTTAAC+AGG | + | chr1.1:78623093-78623112 | MS.gene76270:CDS | 55.0% | |
| CCATTTGGCGTGGTTCTTGG+AGG | + | chr1.1:78624733-78624752 | MS.gene76270:CDS | 55.0% | |
| CCTCCAAGAACCACGCCAAA+TGG | - | chr1.1:78624736-78624755 | None:intergenic | 55.0% | |
| GGACAGGGAATCAGAGGAGT+TGG | + | chr1.1:78623739-78623758 | MS.gene76270:intron | 55.0% | |
| TGAATGGGGTGACAAGAGCC+AGG | + | chr1.1:78624582-78624601 | MS.gene76270:CDS | 55.0% | |
| TGGTTGGGCTGCTCCAAATC+TGG | + | chr1.1:78623287-78623306 | MS.gene76270:CDS | 55.0% | |
| !! | CCTGTTAAGACAAGGCGTCG+TGG | - | chr1.1:78623096-78623115 | None:intergenic | 55.0% |
| GGGGTGACAAGAGCCAGGTA+AGG | + | chr1.1:78624587-78624606 | MS.gene76270:intron | 60.0% | |
| ! | TGGCAGGTTGGACTCTCAGG+TGG | + | chr1.1:78625360-78625379 | MS.gene76270:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 78622402 | 78625434 | 78622402 | ID=MS.gene76270 |
| chr1.1 | mRNA | 78622402 | 78625434 | 78622402 | ID=MS.gene76270.t1;Parent=MS.gene76270 |
| chr1.1 | exon | 78622402 | 78622419 | 78622402 | ID=MS.gene76270.t1.exon1;Parent=MS.gene76270.t1 |
| chr1.1 | CDS | 78622402 | 78622419 | 78622402 | ID=cds.MS.gene76270.t1;Parent=MS.gene76270.t1 |
| chr1.1 | exon | 78622504 | 78622572 | 78622504 | ID=MS.gene76270.t1.exon2;Parent=MS.gene76270.t1 |
| chr1.1 | CDS | 78622504 | 78622572 | 78622504 | ID=cds.MS.gene76270.t1;Parent=MS.gene76270.t1 |
| chr1.1 | exon | 78623075 | 78623134 | 78623075 | ID=MS.gene76270.t1.exon3;Parent=MS.gene76270.t1 |
| chr1.1 | CDS | 78623075 | 78623134 | 78623075 | ID=cds.MS.gene76270.t1;Parent=MS.gene76270.t1 |
| chr1.1 | exon | 78623261 | 78623308 | 78623261 | ID=MS.gene76270.t1.exon4;Parent=MS.gene76270.t1 |
| chr1.1 | CDS | 78623261 | 78623308 | 78623261 | ID=cds.MS.gene76270.t1;Parent=MS.gene76270.t1 |
| chr1.1 | exon | 78623543 | 78623631 | 78623543 | ID=MS.gene76270.t1.exon5;Parent=MS.gene76270.t1 |
| chr1.1 | CDS | 78623543 | 78623631 | 78623543 | ID=cds.MS.gene76270.t1;Parent=MS.gene76270.t1 |
| chr1.1 | exon | 78623745 | 78623781 | 78623745 | ID=MS.gene76270.t1.exon6;Parent=MS.gene76270.t1 |
| chr1.1 | CDS | 78623745 | 78623781 | 78623745 | ID=cds.MS.gene76270.t1;Parent=MS.gene76270.t1 |
| chr1.1 | exon | 78623861 | 78623908 | 78623861 | ID=MS.gene76270.t1.exon7;Parent=MS.gene76270.t1 |
| chr1.1 | CDS | 78623861 | 78623908 | 78623861 | ID=cds.MS.gene76270.t1;Parent=MS.gene76270.t1 |
| chr1.1 | exon | 78624404 | 78624472 | 78624404 | ID=MS.gene76270.t1.exon8;Parent=MS.gene76270.t1 |
| chr1.1 | CDS | 78624404 | 78624472 | 78624404 | ID=cds.MS.gene76270.t1;Parent=MS.gene76270.t1 |
| chr1.1 | exon | 78624559 | 78624603 | 78624559 | ID=MS.gene76270.t1.exon9;Parent=MS.gene76270.t1 |
| chr1.1 | CDS | 78624559 | 78624603 | 78624559 | ID=cds.MS.gene76270.t1;Parent=MS.gene76270.t1 |
| chr1.1 | exon | 78624700 | 78624761 | 78624700 | ID=MS.gene76270.t1.exon10;Parent=MS.gene76270.t1 |
| chr1.1 | CDS | 78624700 | 78624761 | 78624700 | ID=cds.MS.gene76270.t1;Parent=MS.gene76270.t1 |
| chr1.1 | exon | 78625028 | 78625100 | 78625028 | ID=MS.gene76270.t1.exon11;Parent=MS.gene76270.t1 |
| chr1.1 | CDS | 78625028 | 78625100 | 78625028 | ID=cds.MS.gene76270.t1;Parent=MS.gene76270.t1 |
| chr1.1 | exon | 78625366 | 78625434 | 78625366 | ID=MS.gene76270.t1.exon12;Parent=MS.gene76270.t1 |
| chr1.1 | CDS | 78625366 | 78625434 | 78625366 | ID=cds.MS.gene76270.t1;Parent=MS.gene76270.t1 |
| Gene Sequence |
| Protein sequence |
