Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029366.t1 | XP_013470223.1 | 97.3 | 221 | 6 | 0 | 1 | 221 | 7 | 227 | 2.40E-112 | 414.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029366.t1 | Q9SX28 | 76.1 | 222 | 52 | 1 | 1 | 222 | 7 | 227 | 1.0e-87 | 324.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029366.t1 | I3SF71 | 97.3 | 221 | 6 | 0 | 1 | 221 | 7 | 227 | 1.8e-112 | 414.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene029366 | MS.gene76270 | PPI |
| MS.gene029366 | MS.gene065100 | PPI |
| MS.gene029366 | MS.gene029365 | PPI |
| MS.gene029366 | MS.gene029368 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029366.t1 | MTR_1g111390 | 97.285 | 221 | 6 | 0 | 1 | 221 | 7 | 227 | 1.59e-155 | 430 |
| MS.gene029366.t1 | MTR_7g079850 | 43.056 | 216 | 110 | 1 | 2 | 217 | 76 | 278 | 2.61e-50 | 165 |
| MS.gene029366.t1 | MTR_1g046730 | 40.000 | 225 | 113 | 6 | 1 | 217 | 151 | 361 | 1.17e-36 | 132 |
| MS.gene029366.t1 | MTR_5g009810 | 32.883 | 222 | 123 | 4 | 1 | 213 | 138 | 342 | 2.39e-23 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029366.t1 | AT1G25520 | 76.682 | 223 | 51 | 1 | 1 | 222 | 7 | 229 | 6.48e-112 | 320 |
| MS.gene029366.t1 | AT1G68650 | 76.126 | 222 | 52 | 1 | 1 | 222 | 7 | 227 | 3.34e-111 | 318 |
| MS.gene029366.t1 | AT5G36290 | 41.475 | 217 | 109 | 2 | 4 | 217 | 87 | 288 | 2.42e-48 | 160 |
| MS.gene029366.t1 | AT5G36290 | 41.475 | 217 | 109 | 2 | 4 | 217 | 87 | 288 | 2.42e-48 | 160 |
| MS.gene029366.t1 | AT4G13590 | 39.732 | 224 | 115 | 5 | 1 | 217 | 145 | 355 | 4.20e-39 | 138 |
| MS.gene029366.t1 | AT4G13590 | 39.732 | 224 | 115 | 5 | 1 | 217 | 145 | 355 | 4.48e-39 | 138 |
| MS.gene029366.t1 | AT1G64150 | 33.188 | 229 | 112 | 4 | 1 | 213 | 158 | 361 | 1.92e-23 | 97.1 |
Find 50 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTGAAAGAGGCTATATT+TGG | 0.236172 | 1.4:+85147331 | MS.gene029366:CDS |
| TTTCTCTCCCATCTTGTTAC+AGG | 0.249070 | 1.4:+85148178 | MS.gene029366:CDS |
| TTCTCTCTGTTCTTGTTGGT+TGG | 0.281934 | 1.4:+85146999 | MS.gene029366:CDS |
| AACCCATTTGGCGTGGTTCT+TGG | 0.294089 | 1.4:+85148457 | MS.gene029366:CDS |
| TGTACTTCTGCTGCTGTTAT+CGG | 0.295744 | 1.4:+85148768 | MS.gene029366:CDS |
| AAAAGAATGCTCACCAGATT+TGG | 0.305070 | 1.4:-85147028 | None:intergenic |
| ATTACGACGTTCTTATTCTT+CGG | 0.306446 | 1.4:+85147295 | MS.gene029366:CDS |
| ACAATTCTCTCTGTTCTTGT+TGG | 0.313902 | 1.4:+85146995 | MS.gene029366:CDS |
| TGGTTGGGCTGCTCCAAATC+TGG | 0.336034 | 1.4:+85147015 | MS.gene029366:CDS |
| CCACGACGCCTTGTCTTAAC+AGG | 0.342518 | 1.4:+85146824 | MS.gene029366:CDS |
| TCTCTCTGTTCTTGTTGGTT+GGG | 0.349163 | 1.4:+85147000 | MS.gene029366:CDS |
| ATTTGGCAGGTTGGACTCTC+AGG | 0.356838 | 1.4:+85149083 | MS.gene029366:intron |
| TTACGACGTTCTTATTCTTC+GGG | 0.364759 | 1.4:+85147296 | MS.gene029366:CDS |
| ATTGTAATTAGGACAAAGAT+TGG | 0.389163 | 1.4:+85147578 | MS.gene029366:intron |
| TATTCTTCGGGTTTGGACTT+TGG | 0.392999 | 1.4:+85147308 | MS.gene029366:CDS |
| CCTCCAAGAACCACGCCAAA+TGG | 0.394458 | 1.4:-85148460 | None:intergenic |
| ACGTTCTTATTCTTCGGGTT+TGG | 0.403780 | 1.4:+85147301 | MS.gene029366:CDS |
| GGCTGAAGTTGAAGCTGAAC+TGG | 0.424673 | 1.4:+85147488 | MS.gene029366:CDS |
| TCCAAATATAGCCTCTTTCA+AGG | 0.428412 | 1.4:-85147332 | None:intergenic |
| AGCTACAAAAGATACCAAAA+AGG | 0.435268 | 1.4:+85147615 | MS.gene029366:CDS |
| GCTGCAGATGAAAACCCATT+TGG | 0.436487 | 1.4:+85148445 | MS.gene029366:CDS |
| TTATGCAGATCTCTCGTAGT+TGG | 0.455915 | 1.4:+85147263 | MS.gene029366:intron |
| TATGCAGATCTCTCGTAGTT+GGG | 0.473253 | 1.4:+85147264 | MS.gene029366:intron |
| CGACTGAAGAAAGGAATGAT+TGG | 0.477906 | 1.4:-85149133 | None:intergenic |
| CCATTTGGCGTGGTTCTTGG+AGG | 0.480629 | 1.4:+85148460 | MS.gene029366:CDS |
| TTCATCTGCAGCTAAACCTA+TGG | 0.483168 | 1.4:-85148434 | None:intergenic |
| ATTTATTACCTGTAACAAGA+TGG | 0.486365 | 1.4:-85148186 | None:intergenic |
| CATTTGGCGTGGTTCTTGGA+GGG | 0.488586 | 1.4:+85148461 | MS.gene029366:CDS |
| TTTGTTCAGTTGGCTACCAT+AGG | 0.495409 | 1.4:+85148418 | MS.gene029366:intron |
| TGGACTTTGGTCCTTGAAAG+AGG | 0.497549 | 1.4:+85147321 | MS.gene029366:CDS |
| CTCCAAGAACCACGCCAAAT+GGG | 0.499798 | 1.4:-85148459 | None:intergenic |
| TTTATTACCTGTAACAAGAT+GGG | 0.502150 | 1.4:-85148185 | None:intergenic |
| GGACAGGGAATCAGAGGAGT+TGG | 0.506438 | 1.4:+85147467 | MS.gene029366:intron |
| TTCATCATTCGACTGAAGAA+AGG | 0.517530 | 1.4:-85149142 | None:intergenic |
| CTGTTAAGACAAGGCGTCGT+GGG | 0.520280 | 1.4:-85146823 | None:intergenic |
| AAAGAGGCTATATTTGGAGA+AGG | 0.530172 | 1.4:+85147337 | MS.gene029366:CDS |
| AAGAGGCTATATTTGGAGAA+GGG | 0.538449 | 1.4:+85147338 | MS.gene029366:CDS |
| TGAATGGGGTGACAAGAGCC+AGG | 0.563011 | 1.4:+85148309 | MS.gene029366:CDS |
| TTTGATGGACAGGGAATCAG+AGG | 0.572662 | 1.4:+85147461 | MS.gene029366:intron |
| TAATTAGGACAAAGATTGGA+AGG | 0.578900 | 1.4:+85147582 | MS.gene029366:intron |
| ACTTCTGCTGCTGTTATCGG+AGG | 0.588680 | 1.4:+85148771 | MS.gene029366:CDS |
| GATCTCAGAGAGAACGGTCA+TGG | 0.590501 | 1.4:-85146247 | None:intergenic |
| ATGACCGTTCTCTCTGAGAT+CGG | 0.592001 | 1.4:+85146249 | MS.gene029366:CDS |
| CCTGTTAAGACAAGGCGTCG+TGG | 0.599776 | 1.4:-85146824 | None:intergenic |
| CGAGGCAACCTGTTAAGACA+AGG | 0.611382 | 1.4:-85146832 | None:intergenic |
| ATCACCGATCTCAGAGAGAA+CGG | 0.615665 | 1.4:-85146253 | None:intergenic |
| TGGCAGGTTGGACTCTCAGG+TGG | 0.615800 | 1.4:+85149086 | MS.gene029366:intron |
| CTTCTGCTGCTGTTATCGGA+GGG | 0.621384 | 1.4:+85148772 | MS.gene029366:CDS |
| AGATGAAAACCCATTTGGCG+TGG | 0.640914 | 1.4:+85148450 | MS.gene029366:CDS |
| TTCTTACTATCAAAGCTGCG+AGG | 0.724515 | 1.4:-85146850 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTAGTTGTTTATTAC+AGG | + | chr1.4:85148733-85148752 | MS.gene029366:intron | 15.0% |
| !! | ATTATTAGTTGTTTATTACA+GGG | + | chr1.4:85148734-85148753 | MS.gene029366:intron | 15.0% |
| !! | GAAATTACTTGAATTAAAAA+AGG | - | chr1.4:85148902-85148921 | None:intergenic | 15.0% |
| !!! | TTTCATTTTCTTGTATATAT+TGG | + | chr1.4:85148353-85148372 | MS.gene029366:intron | 15.0% |
| !! | AAAAACAAAGATAACAAATC+TGG | - | chr1.4:85146917-85146936 | None:intergenic | 20.0% |
| !! | AACTTATTCATACTTTGAAT+AGG | + | chr1.4:85147921-85147940 | MS.gene029366:intron | 20.0% |
| !! | AATAGCATGAAAATCAATAA+GGG | - | chr1.4:85147245-85147264 | None:intergenic | 20.0% |
| !! | AGATAACAAATATATCAAAC+AGG | + | chr1.4:85146704-85146723 | MS.gene029366:intron | 20.0% |
| !! | AGTAAATGAAAAAGAAGTAA+TGG | + | chr1.4:85148945-85148964 | MS.gene029366:intron | 20.0% |
| !! | ATCAAAGAAAAAAGATAATG+CGG | - | chr1.4:85147217-85147236 | None:intergenic | 20.0% |
| !! | ATTACTTGAATTAAAAAAGG+TGG | - | chr1.4:85148899-85148918 | None:intergenic | 20.0% |
| !! | ATTCAGTTACAATTCATTAT+TGG | + | chr1.4:85146493-85146512 | MS.gene029366:intron | 20.0% |
| !! | CAAATATATCTTTAACCATT+TGG | - | chr1.4:85147827-85147846 | None:intergenic | 20.0% |
| !! | CAAATGGTTAAAGATATATT+TGG | + | chr1.4:85147825-85147844 | MS.gene029366:intron | 20.0% |
| !! | CTTGTAAAATTTCGAATTAT+AGG | + | chr1.4:85146967-85146986 | MS.gene029366:intron | 20.0% |
| !! | GAGTTTCAATTTCAAATATT+AGG | + | chr1.4:85146550-85146569 | MS.gene029366:intron | 20.0% |
| !! | TAATAGCATGAAAATCAATA+AGG | - | chr1.4:85147246-85147265 | None:intergenic | 20.0% |
| !! | TATGACAAATAATGTGTATT+AGG | - | chr1.4:85148103-85148122 | None:intergenic | 20.0% |
| !! | TTAAAAAAGGTGGAAAAAAA+AGG | - | chr1.4:85148889-85148908 | None:intergenic | 20.0% |
| !! | TTATTAGTTGTTTATTACAG+GGG | + | chr1.4:85148735-85148754 | MS.gene029366:intron | 20.0% |
| !! | TTCATTAGAAATGTATAATC+AGG | - | chr1.4:85147390-85147409 | None:intergenic | 20.0% |
| !! | TTCGTAATAAATTCATTTGA+TGG | + | chr1.4:85147446-85147465 | MS.gene029366:intron | 20.0% |
| !!! | AGTAGACAAAATATTTTCTA+TGG | - | chr1.4:85147786-85147805 | None:intergenic | 20.0% |
| !!! | CATTATTTGTCATATTTTTC+AGG | + | chr1.4:85148109-85148128 | MS.gene029366:intron | 20.0% |
| !!! | CTATAATTCGAAATTTTACA+AGG | - | chr1.4:85146969-85146988 | None:intergenic | 20.0% |
| !!! | GGAATTCTTTTTATTGTTTT+TGG | + | chr1.4:85149107-85149126 | MS.gene029366:CDS | 20.0% |
| !!! | TAACTTTTTTTTTGTTCAGT+TGG | + | chr1.4:85148408-85148427 | MS.gene029366:intron | 20.0% |
| !!! | TATCTTTGTTTTTAAAGTAG+TGG | + | chr1.4:85146924-85146943 | MS.gene029366:intron | 20.0% |
| ! | AAAAAGGTGACAAAAACATA+TGG | - | chr1.4:85148873-85148892 | None:intergenic | 25.0% |
| ! | AAATGTTGAATACAGCATTT+AGG | - | chr1.4:85149067-85149086 | None:intergenic | 25.0% |
| ! | AACAAATATATCAAACAGGA+AGG | + | chr1.4:85146708-85146727 | MS.gene029366:intron | 25.0% |
| ! | AAGTGAAAAGGAATCAAATT+TGG | - | chr1.4:85148255-85148274 | None:intergenic | 25.0% |
| ! | ACAAATATATCAAACAGGAA+GGG | + | chr1.4:85146709-85146728 | MS.gene029366:intron | 25.0% |
| ! | ATGCCACAAAAAAACATAAA+CGG | + | chr1.4:85148138-85148157 | MS.gene029366:CDS | 25.0% |
| ! | ATTCTAATTTACTACACTAC+TGG | + | chr1.4:85149014-85149033 | MS.gene029366:intron | 25.0% |
| ! | ATTGTAATTAGGACAAAGAT+TGG | + | chr1.4:85147578-85147597 | MS.gene029366:intron | 25.0% |
| ! | ATTTATTACCTGTAACAAGA+TGG | - | chr1.4:85148189-85148208 | None:intergenic | 25.0% |
| ! | CATAATTCCTAAAATTGAAG+GGG | + | chr1.4:85146598-85146617 | MS.gene029366:intron | 25.0% |
| ! | GAAAATAGTCATAATCTTGA+AGG | - | chr1.4:85148547-85148566 | None:intergenic | 25.0% |
| ! | GAATTCAGTTAAATATTGCA+TGG | - | chr1.4:85148223-85148242 | None:intergenic | 25.0% |
| ! | GAGAAAAACTGAGATAAAAA+TGG | - | chr1.4:85148164-85148183 | None:intergenic | 25.0% |
| ! | GCATAATTCCTAAAATTGAA+GGG | + | chr1.4:85146597-85146616 | MS.gene029366:intron | 25.0% |
| ! | TAAATGCTGTATTCAACATT+TGG | + | chr1.4:85149066-85149085 | MS.gene029366:intron | 25.0% |
| ! | TATTAGTTGTTTATTACAGG+GGG | + | chr1.4:85148736-85148755 | MS.gene029366:intron | 25.0% |
| ! | TCAAAGAAAAAAGATAATGC+GGG | - | chr1.4:85147216-85147235 | None:intergenic | 25.0% |
| ! | TCAGCATGAGTATATATTAT+AGG | + | chr1.4:85147170-85147189 | MS.gene029366:intron | 25.0% |
| ! | TGCATAATTCCTAAAATTGA+AGG | + | chr1.4:85146596-85146615 | MS.gene029366:intron | 25.0% |
| ! | TGTGATATTTGATTACCAAA+TGG | + | chr1.4:85147809-85147828 | MS.gene029366:intron | 25.0% |
| ! | TTGAGGTGAGAAAATAAATA+AGG | - | chr1.4:85146328-85146347 | None:intergenic | 25.0% |
| ! | TTGTCCTAATTACAATACAA+GGG | - | chr1.4:85147574-85147593 | None:intergenic | 25.0% |
| ! | TTTATTACCTGTAACAAGAT+GGG | - | chr1.4:85148188-85148207 | None:intergenic | 25.0% |
| ! | TTTGTCCTAATTACAATACA+AGG | - | chr1.4:85147575-85147594 | None:intergenic | 25.0% |
| !! | AATAAATTCATTTGATGGAC+AGG | + | chr1.4:85147451-85147470 | MS.gene029366:intron | 25.0% |
| !! | AGATTATGACTATTTTCCTT+TGG | + | chr1.4:85148550-85148569 | MS.gene029366:intron | 25.0% |
| !! | ATAAATTCATTTGATGGACA+GGG | + | chr1.4:85147452-85147471 | MS.gene029366:intron | 25.0% |
| !!! | CAGGTATTATTTTACCTTTT+TGG | - | chr1.4:85147632-85147651 | None:intergenic | 25.0% |
| !!! | GCATTTTCTATCACTTTTTT+TGG | + | chr1.4:85148286-85148305 | MS.gene029366:CDS | 25.0% |
| !!! | GTTGGTTTTTCAACATTATT+TGG | + | chr1.4:85147510-85147529 | MS.gene029366:intron | 25.0% |
| !!! | TATCACTTTTTTTGGTGAAT+GGG | + | chr1.4:85148294-85148313 | MS.gene029366:CDS | 25.0% |
| !!! | TGAATAGTTATTGAGTTGAT+TGG | - | chr1.4:85146419-85146438 | None:intergenic | 25.0% |
| AAAAGGAATCAAATTTGGCA+TGG | - | chr1.4:85148250-85148269 | None:intergenic | 30.0% | |
| AAAGATTGGAAGGCTAAAAA+TGG | + | chr1.4:85147592-85147611 | MS.gene029366:CDS | 30.0% | |
| AACACCCTTGTATTGTAATT+AGG | + | chr1.4:85147567-85147586 | MS.gene029366:intron | 30.0% | |
| AGCTACAAAAGATACCAAAA+AGG | + | chr1.4:85147615-85147634 | MS.gene029366:CDS | 30.0% | |
| ATTACGACGTTCTTATTCTT+CGG | + | chr1.4:85147295-85147314 | MS.gene029366:CDS | 30.0% | |
| CAAATCTGGAAAAGAAAGAA+AGG | - | chr1.4:85146903-85146922 | None:intergenic | 30.0% | |
| CAGCACAGATTTAATTAAAC+AGG | - | chr1.4:85147651-85147670 | None:intergenic | 30.0% | |
| GAATAGATGCAACAATTTCT+AGG | + | chr1.4:85148979-85148998 | MS.gene029366:intron | 30.0% | |
| GTTAATGAAGAAACAAATGC+AGG | - | chr1.4:85148579-85148598 | None:intergenic | 30.0% | |
| TAAGAAATTTGTAGCACCTT+AGG | - | chr1.4:85148701-85148720 | None:intergenic | 30.0% | |
| TAATTAGGACAAAGATTGGA+AGG | + | chr1.4:85147582-85147601 | MS.gene029366:intron | 30.0% | |
| TGATGCTTATTTCAAGATAC+TGG | + | chr1.4:85146790-85146809 | MS.gene029366:intron | 30.0% | |
| TGCTACAAATTTCTTAGAAG+AGG | + | chr1.4:85148705-85148724 | MS.gene029366:intron | 30.0% | |
| ! | AGAAGTAATGGAAAACTTGA+TGG | + | chr1.4:85148957-85148976 | MS.gene029366:intron | 30.0% |
| ! | AGTAGTGCAATTGAAGATTT+TGG | - | chr1.4:85147978-85147997 | None:intergenic | 30.0% |
| ! | ATCTCAGATTTCTGAAAAAG+TGG | + | chr1.4:85148806-85148825 | MS.gene029366:CDS | 30.0% |
| ! | ATTATCACCCCTTCAATTTT+AGG | - | chr1.4:85146608-85146627 | None:intergenic | 30.0% |
| !! | GTATAATCAGGTTGATATGA+GGG | - | chr1.4:85147378-85147397 | None:intergenic | 30.0% |
| !! | TGATGATTCTGAAGTTAAAC+CGG | - | chr1.4:85147057-85147076 | None:intergenic | 30.0% |
| !! | TGTATAATCAGGTTGATATG+AGG | - | chr1.4:85147379-85147398 | None:intergenic | 30.0% |
| !!! | ATCACTTTTTTTGGTGAATG+GGG | + | chr1.4:85148295-85148314 | MS.gene029366:CDS | 30.0% |
| !!! | CTATCACTTTTTTTGGTGAA+TGG | + | chr1.4:85148293-85148312 | MS.gene029366:CDS | 30.0% |
| AAAAGAATGCTCACCAGATT+TGG | - | chr1.4:85147031-85147050 | None:intergenic | 35.0% | |
| AAAGAGGCTATATTTGGAGA+AGG | + | chr1.4:85147337-85147356 | MS.gene029366:CDS | 35.0% | |
| AAGAGGCTATATTTGGAGAA+GGG | + | chr1.4:85147338-85147357 | MS.gene029366:CDS | 35.0% | |
| ACAATTCTCTCTGTTCTTGT+TGG | + | chr1.4:85146995-85147014 | MS.gene029366:CDS | 35.0% | |
| ACAGATATGTCTTATGCCTA+AGG | + | chr1.4:85148682-85148701 | MS.gene029366:intron | 35.0% | |
| AGAGTGTAGTGTTTGTTTAG+AGG | + | chr1.4:85148647-85148666 | MS.gene029366:intron | 35.0% | |
| TACACTCTTTCACATTTGCA+AGG | - | chr1.4:85148635-85148654 | None:intergenic | 35.0% | |
| TAGGAACTTCAAATCTTGCA+AGG | + | chr1.4:85147940-85147959 | MS.gene029366:intron | 35.0% | |
| TCCAAATATAGCCTCTTTCA+AGG | - | chr1.4:85147335-85147354 | None:intergenic | 35.0% | |
| TCCTTGAAAGAGGCTATATT+TGG | + | chr1.4:85147331-85147350 | MS.gene029366:CDS | 35.0% | |
| TGAGATCAAAAGAGTGAACA+TGG | - | chr1.4:85147692-85147711 | None:intergenic | 35.0% | |
| TTACGACGTTCTTATTCTTC+GGG | + | chr1.4:85147296-85147315 | MS.gene029366:CDS | 35.0% | |
| ! | GTTCTGTTGTTGTAGTTCTA+AGG | - | chr1.4:85147856-85147875 | None:intergenic | 35.0% |
| ! | GTTTTCTAACTATCCTTACC+TGG | - | chr1.4:85148330-85148349 | None:intergenic | 35.0% |
| !!! | TAAGACTTTTTTTGCAGCTG+CGG | + | chr1.4:85146275-85146294 | MS.gene029366:CDS | 35.0% |
| !!! | TGGCCGTTTATGTTTTTTTG+TGG | - | chr1.4:85148144-85148163 | None:intergenic | 35.0% |
| AAACAAATGCAGGCAACCAA+AGG | - | chr1.4:85148569-85148588 | None:intergenic | 40.0% | |
| CGACTGAAGAAAGGAATGAT+TGG | - | chr1.4:85149136-85149155 | None:intergenic | 40.0% | |
| GATAGAAAATGCCTGCAGAA+TGG | - | chr1.4:85148278-85148297 | None:intergenic | 40.0% | |
| GATCAAAAGAGTGAACATGG+AGG | - | chr1.4:85147689-85147708 | None:intergenic | 40.0% | |
| GTATTCAACATTTGGCAGGT+TGG | + | chr1.4:85149074-85149093 | MS.gene029366:intron | 40.0% | |
| TATCAAACAGGAAGGGCTAA+TGG | + | chr1.4:85146716-85146735 | MS.gene029366:intron | 40.0% | |
| TATGCAGATCTCTCGTAGTT+GGG | + | chr1.4:85147264-85147283 | MS.gene029366:intron | 40.0% | |
| TGCTGTATTCAACATTTGGC+AGG | + | chr1.4:85149070-85149089 | MS.gene029366:intron | 40.0% | |
| TGTACTTCTGCTGCTGTTAT+CGG | + | chr1.4:85148768-85148787 | MS.gene029366:CDS | 40.0% | |
| TGTTATCTTATCGTGACTCG+TGG | + | chr1.4:85147110-85147129 | MS.gene029366:intron | 40.0% | |
| TTATGCAGATCTCTCGTAGT+TGG | + | chr1.4:85147263-85147282 | MS.gene029366:intron | 40.0% | |
| TTCATCTGCAGCTAAACCTA+TGG | - | chr1.4:85148437-85148456 | None:intergenic | 40.0% | |
| TTCCTTTCTTCAGTCGAATG+AGG | + | chr1.4:85149140-85149159 | MS.gene029366:CDS | 40.0% | |
| TTCTCTCTGTTCTTGTTGGT+TGG | + | chr1.4:85146999-85147018 | MS.gene029366:CDS | 40.0% | |
| TTCTTACTATCAAAGCTGCG+AGG | - | chr1.4:85146853-85146872 | None:intergenic | 40.0% | |
| TTTCTCTCCCATCTTGTTAC+AGG | + | chr1.4:85148178-85148197 | MS.gene029366:CDS | 40.0% | |
| TTTGTTCAGTTGGCTACCAT+AGG | + | chr1.4:85148418-85148437 | MS.gene029366:intron | 40.0% | |
| ! | ACGTTCTTATTCTTCGGGTT+TGG | + | chr1.4:85147301-85147320 | MS.gene029366:CDS | 40.0% |
| ! | TATTCTTCGGGTTTGGACTT+TGG | + | chr1.4:85147308-85147327 | MS.gene029366:CDS | 40.0% |
| ! | TCTCTCTGTTCTTGTTGGTT+GGG | + | chr1.4:85147000-85147019 | MS.gene029366:CDS | 40.0% |
| !!! | TGGTGAGCATTCTTTTTTGC+CGG | + | chr1.4:85147035-85147054 | MS.gene029366:intron | 40.0% |
| AGAGTGTGATATCTGAGCTG+AGG | - | chr1.4:85146355-85146374 | None:intergenic | 45.0% | |
| AGATGAAAACCCATTTGGCG+TGG | + | chr1.4:85148450-85148469 | MS.gene029366:CDS | 45.0% | |
| ATCACCGATCTCAGAGAGAA+CGG | - | chr1.4:85146256-85146275 | None:intergenic | 45.0% | |
| ATGACCGCACATCGTCTTAA+GGG | - | chr1.4:85147741-85147760 | None:intergenic | 45.0% | |
| CCTGCAGAATGGAAGTGAAA+AGG | - | chr1.4:85148267-85148286 | None:intergenic | 45.0% | |
| GAAGTTGAAGCTGAACTGGT+TGG | + | chr1.4:85147492-85147511 | MS.gene029366:intron | 45.0% | |
| GCTGCAGATGAAAACCCATT+TGG | + | chr1.4:85148445-85148464 | MS.gene029366:CDS | 45.0% | |
| TATGACCGCACATCGTCTTA+AGG | - | chr1.4:85147742-85147761 | None:intergenic | 45.0% | |
| TGGACTTTGGTCCTTGAAAG+AGG | + | chr1.4:85147321-85147340 | MS.gene029366:CDS | 45.0% | |
| TTGGAGGGATTCTGTGAGTT+TGG | + | chr1.4:85148476-85148495 | MS.gene029366:intron | 45.0% | |
| ! | CCTTTTCACTTCCATTCTGC+AGG | + | chr1.4:85148264-85148283 | MS.gene029366:intron | 45.0% |
| ! | TTTGATGGACAGGGAATCAG+AGG | + | chr1.4:85147461-85147480 | MS.gene029366:intron | 45.0% |
| !! | ATGACCGTTCTCTCTGAGAT+CGG | + | chr1.4:85146249-85146268 | MS.gene029366:CDS | 45.0% |
| AACCCATTTGGCGTGGTTCT+TGG | + | chr1.4:85148457-85148476 | MS.gene029366:CDS | 50.0% | |
| ACTTCTGCTGCTGTTATCGG+AGG | + | chr1.4:85148771-85148790 | MS.gene029366:CDS | 50.0% | |
| ATCTGAGCTGAGGTAGCTTG+AGG | - | chr1.4:85146345-85146364 | None:intergenic | 50.0% | |
| CAGTCCCTTAAGACGATGTG+CGG | + | chr1.4:85147734-85147753 | MS.gene029366:intron | 50.0% | |
| CATTTGGCGTGGTTCTTGGA+GGG | + | chr1.4:85148461-85148480 | MS.gene029366:CDS | 50.0% | |
| CGAGGCAACCTGTTAAGACA+AGG | - | chr1.4:85146835-85146854 | None:intergenic | 50.0% | |
| CTCCAAGAACCACGCCAAAT+GGG | - | chr1.4:85148462-85148481 | None:intergenic | 50.0% | |
| CTTCTGCTGCTGTTATCGGA+GGG | + | chr1.4:85148772-85148791 | MS.gene029366:CDS | 50.0% | |
| GATCTCAGAGAGAACGGTCA+TGG | - | chr1.4:85146250-85146269 | None:intergenic | 50.0% | |
| GGCTGAAGTTGAAGCTGAAC+TGG | + | chr1.4:85147488-85147507 | MS.gene029366:CDS | 50.0% | |
| ! | ATTTGGCAGGTTGGACTCTC+AGG | + | chr1.4:85149083-85149102 | MS.gene029366:intron | 50.0% |
| !! | CTGTTAAGACAAGGCGTCGT+GGG | - | chr1.4:85146826-85146845 | None:intergenic | 50.0% |
| CCACGACGCCTTGTCTTAAC+AGG | + | chr1.4:85146824-85146843 | MS.gene029366:CDS | 55.0% | |
| CCATTTGGCGTGGTTCTTGG+AGG | + | chr1.4:85148460-85148479 | MS.gene029366:CDS | 55.0% | |
| CCTCCAAGAACCACGCCAAA+TGG | - | chr1.4:85148463-85148482 | None:intergenic | 55.0% | |
| GGACAGGGAATCAGAGGAGT+TGG | + | chr1.4:85147467-85147486 | MS.gene029366:intron | 55.0% | |
| TGAATGGGGTGACAAGAGCC+AGG | + | chr1.4:85148309-85148328 | MS.gene029366:CDS | 55.0% | |
| TGGTTGGGCTGCTCCAAATC+TGG | + | chr1.4:85147015-85147034 | MS.gene029366:CDS | 55.0% | |
| !! | CCTGTTAAGACAAGGCGTCG+TGG | - | chr1.4:85146827-85146846 | None:intergenic | 55.0% |
| GGGGTGACAAGAGCCAGGTA+AGG | + | chr1.4:85148314-85148333 | MS.gene029366:intron | 60.0% | |
| ! | TGGCAGGTTGGACTCTCAGG+TGG | + | chr1.4:85149086-85149105 | MS.gene029366:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 85146228 | 85149160 | 85146228 | ID=MS.gene029366 |
| chr1.4 | mRNA | 85146228 | 85149160 | 85146228 | ID=MS.gene029366.t1;Parent=MS.gene029366 |
| chr1.4 | exon | 85146228 | 85146296 | 85146228 | ID=MS.gene029366.t1.exon1;Parent=MS.gene029366.t1 |
| chr1.4 | CDS | 85146228 | 85146296 | 85146228 | ID=cds.MS.gene029366.t1;Parent=MS.gene029366.t1 |
| chr1.4 | exon | 85146806 | 85146865 | 85146806 | ID=MS.gene029366.t1.exon2;Parent=MS.gene029366.t1 |
| chr1.4 | CDS | 85146806 | 85146865 | 85146806 | ID=cds.MS.gene029366.t1;Parent=MS.gene029366.t1 |
| chr1.4 | exon | 85146989 | 85147036 | 85146989 | ID=MS.gene029366.t1.exon3;Parent=MS.gene029366.t1 |
| chr1.4 | CDS | 85146989 | 85147036 | 85146989 | ID=cds.MS.gene029366.t1;Parent=MS.gene029366.t1 |
| chr1.4 | exon | 85147271 | 85147359 | 85147271 | ID=MS.gene029366.t1.exon4;Parent=MS.gene029366.t1 |
| chr1.4 | CDS | 85147271 | 85147359 | 85147271 | ID=cds.MS.gene029366.t1;Parent=MS.gene029366.t1 |
| chr1.4 | exon | 85147473 | 85147509 | 85147473 | ID=MS.gene029366.t1.exon5;Parent=MS.gene029366.t1 |
| chr1.4 | CDS | 85147473 | 85147509 | 85147473 | ID=cds.MS.gene029366.t1;Parent=MS.gene029366.t1 |
| chr1.4 | exon | 85147589 | 85147636 | 85147589 | ID=MS.gene029366.t1.exon6;Parent=MS.gene029366.t1 |
| chr1.4 | CDS | 85147589 | 85147636 | 85147589 | ID=cds.MS.gene029366.t1;Parent=MS.gene029366.t1 |
| chr1.4 | exon | 85148131 | 85148199 | 85148131 | ID=MS.gene029366.t1.exon7;Parent=MS.gene029366.t1 |
| chr1.4 | CDS | 85148131 | 85148199 | 85148131 | ID=cds.MS.gene029366.t1;Parent=MS.gene029366.t1 |
| chr1.4 | exon | 85148286 | 85148330 | 85148286 | ID=MS.gene029366.t1.exon8;Parent=MS.gene029366.t1 |
| chr1.4 | CDS | 85148286 | 85148330 | 85148286 | ID=cds.MS.gene029366.t1;Parent=MS.gene029366.t1 |
| chr1.4 | exon | 85148427 | 85148488 | 85148427 | ID=MS.gene029366.t1.exon9;Parent=MS.gene029366.t1 |
| chr1.4 | CDS | 85148427 | 85148488 | 85148427 | ID=cds.MS.gene029366.t1;Parent=MS.gene029366.t1 |
| chr1.4 | exon | 85148755 | 85148827 | 85148755 | ID=MS.gene029366.t1.exon10;Parent=MS.gene029366.t1 |
| chr1.4 | CDS | 85148755 | 85148827 | 85148755 | ID=cds.MS.gene029366.t1;Parent=MS.gene029366.t1 |
| chr1.4 | exon | 85149092 | 85149160 | 85149092 | ID=MS.gene029366.t1.exon11;Parent=MS.gene029366.t1 |
| chr1.4 | CDS | 85149092 | 85149160 | 85149092 | ID=cds.MS.gene029366.t1;Parent=MS.gene029366.t1 |
| Gene Sequence |
| Protein sequence |
