Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065100.t1 | XP_013470223.1 | 97.4 | 227 | 6 | 0 | 1 | 227 | 1 | 227 | 5.40E-115 | 423.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065100.t1 | Q9SX28 | 75.4 | 228 | 55 | 1 | 1 | 228 | 1 | 227 | 2.0e-89 | 330.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065100.t1 | I3SF71 | 97.4 | 227 | 6 | 0 | 1 | 227 | 1 | 227 | 3.9e-115 | 423.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene029368 | MS.gene065100 | PPI |
| MS.gene029366 | MS.gene065100 | PPI |
| MS.gene76270 | MS.gene065100 | PPI |
| MS.gene029365 | MS.gene065100 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065100.t1 | MTR_1g111390 | 97.357 | 227 | 6 | 0 | 1 | 227 | 1 | 227 | 4.71e-160 | 442 |
| MS.gene065100.t1 | MTR_7g079850 | 42.273 | 220 | 114 | 1 | 4 | 223 | 72 | 278 | 2.69e-50 | 165 |
| MS.gene065100.t1 | MTR_1g046730 | 40.000 | 225 | 113 | 6 | 7 | 223 | 151 | 361 | 1.11e-36 | 132 |
| MS.gene065100.t1 | MTR_5g009810 | 32.883 | 222 | 123 | 4 | 7 | 219 | 138 | 342 | 2.04e-23 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065100.t1 | AT1G25520 | 76.419 | 229 | 53 | 1 | 1 | 228 | 1 | 229 | 9.99e-116 | 330 |
| MS.gene065100.t1 | AT1G68650 | 75.439 | 228 | 55 | 1 | 1 | 228 | 1 | 227 | 5.98e-114 | 325 |
| MS.gene065100.t1 | AT5G36290 | 40.625 | 224 | 115 | 2 | 3 | 223 | 80 | 288 | 1.73e-48 | 161 |
| MS.gene065100.t1 | AT5G36290 | 40.625 | 224 | 115 | 2 | 3 | 223 | 80 | 288 | 1.73e-48 | 161 |
| MS.gene065100.t1 | AT4G13590 | 39.732 | 224 | 115 | 5 | 7 | 223 | 145 | 355 | 3.55e-39 | 139 |
| MS.gene065100.t1 | AT4G13590 | 39.732 | 224 | 115 | 5 | 7 | 223 | 145 | 355 | 3.99e-39 | 138 |
| MS.gene065100.t1 | AT1G64150 | 32.766 | 235 | 117 | 4 | 1 | 219 | 152 | 361 | 6.62e-24 | 98.2 |
Find 51 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCTCCCATCTTGTTAC+AGG | 0.249070 | 1.2:+82482628 | MS.gene065100:CDS |
| AAAAGAATGCCCACCAGATT+TGG | 0.278704 | 1.2:-82481472 | None:intergenic |
| TTCTCTCTGTTCTTGTTGGT+TGG | 0.281934 | 1.2:+82481443 | MS.gene065100:CDS |
| AACCCATTTGGCGTGGTTCT+TGG | 0.294089 | 1.2:+82482908 | MS.gene065100:CDS |
| TGTACTTCTGCTGCTGTTAT+CGG | 0.295744 | 1.2:+82483219 | MS.gene065100:CDS |
| TCCTTGAAAGAGGCTATATT+TGG | 0.298402 | 1.2:+82481775 | MS.gene065100:CDS |
| ATTACGACGTTCTTATTCTT+CGG | 0.306446 | 1.2:+82481739 | MS.gene065100:CDS |
| ACAATTCTCTCTGTTCTTGT+TGG | 0.313902 | 1.2:+82481439 | MS.gene065100:CDS |
| TGGTTGGGCTGCTCCAAATC+TGG | 0.326375 | 1.2:+82481459 | MS.gene065100:CDS |
| CCACGACGCCTTGTCTTAAC+AGG | 0.342518 | 1.2:+82481245 | MS.gene065100:CDS |
| TCTCTCTGTTCTTGTTGGTT+GGG | 0.349163 | 1.2:+82481444 | MS.gene065100:CDS |
| ATTTGGCAGGTTGGACTCTC+AGG | 0.356838 | 1.2:+82483535 | MS.gene065100:intron |
| TTACGACGTTCTTATTCTTC+GGG | 0.364759 | 1.2:+82481740 | MS.gene065100:CDS |
| ATTGTAATTAGGACAAAGAT+TGG | 0.389163 | 1.2:+82482023 | MS.gene065100:intron |
| CCTCCAAGAACCACGCCAAA+TGG | 0.394458 | 1.2:-82482911 | None:intergenic |
| ACGTTCTTATTCTTCGGGTT+TGG | 0.403780 | 1.2:+82481745 | MS.gene065100:CDS |
| GGCTGAAGTTGAAGCTGAAC+TGG | 0.424673 | 1.2:+82481933 | MS.gene065100:CDS |
| TCCAAATATAGCCTCTTTCA+AGG | 0.428412 | 1.2:-82481776 | None:intergenic |
| AGCTACAAAAGATACCAAAA+AGG | 0.435268 | 1.2:+82482060 | MS.gene065100:CDS |
| GCTGCAGATGAAAACCCATT+TGG | 0.436487 | 1.2:+82482896 | MS.gene065100:CDS |
| TTATGCAGATCTCTCGTAGT+TGG | 0.455915 | 1.2:+82481707 | MS.gene065100:intron |
| AAATATGAGCTCAATTGTTC+AGG | 0.472397 | 1.2:+82480507 | None:intergenic |
| TATGCAGATCTCTCGTAGTT+GGG | 0.473253 | 1.2:+82481708 | MS.gene065100:intron |
| CGACTGAAGAAAGGAATGAT+TGG | 0.477906 | 1.2:-82483585 | None:intergenic |
| CCATTTGGCGTGGTTCTTGG+AGG | 0.480629 | 1.2:+82482911 | MS.gene065100:CDS |
| TTCATCTGCAGCTAAACCTA+TGG | 0.483168 | 1.2:-82482885 | None:intergenic |
| ATTTATTACCTGTAACAAGA+TGG | 0.486365 | 1.2:-82482636 | None:intergenic |
| CATTTGGCGTGGTTCTTGGA+GGG | 0.488586 | 1.2:+82482912 | MS.gene065100:CDS |
| TTTGTTCAGTTGGCTACCAT+AGG | 0.495409 | 1.2:+82482869 | MS.gene065100:intron |
| CTCCAAGAACCACGCCAAAT+GGG | 0.499798 | 1.2:-82482910 | None:intergenic |
| TTTATTACCTGTAACAAGAT+GGG | 0.502150 | 1.2:-82482635 | None:intergenic |
| GGACAGGGAATCAGAGGAGT+TGG | 0.506438 | 1.2:+82481912 | MS.gene065100:intron |
| TGGACTGTGGTCCTTGAAAG+AGG | 0.506920 | 1.2:+82481765 | MS.gene065100:CDS |
| TTCATCATTCGACTGAAGAA+AGG | 0.517530 | 1.2:-82483594 | None:intergenic |
| CTGTTAAGACAAGGCGTCGT+GGG | 0.520280 | 1.2:-82481244 | None:intergenic |
| AAAGAGGCTATATTTGGAGA+AGG | 0.530172 | 1.2:+82481781 | MS.gene065100:CDS |
| AAGAGGCTATATTTGGAGAA+GGG | 0.538449 | 1.2:+82481782 | MS.gene065100:CDS |
| TATTCTTCGGGTTTGGACTG+TGG | 0.555058 | 1.2:+82481752 | MS.gene065100:CDS |
| TGAATGGGGTGACAAGAGCC+AGG | 0.563011 | 1.2:+82482759 | MS.gene065100:CDS |
| TTTGATGGACAGGGAATCAG+AGG | 0.572662 | 1.2:+82481906 | MS.gene065100:intron |
| TAATTAGGACAAAGATTGGA+AGG | 0.578900 | 1.2:+82482027 | MS.gene065100:intron |
| ACTTCTGCTGCTGTTATCGG+AGG | 0.588680 | 1.2:+82483222 | MS.gene065100:CDS |
| CCTGTTAAGACAAGGCGTCG+TGG | 0.599776 | 1.2:-82481245 | None:intergenic |
| ATCACCGATCTCAGATAGAA+CGG | 0.607330 | 1.2:-82480643 | None:intergenic |
| CGAGGCAACCTGTTAAGACA+AGG | 0.611382 | 1.2:-82481253 | None:intergenic |
| GATCTCAGATAGAACGGTCA+TGG | 0.612801 | 1.2:-82480637 | None:intergenic |
| TGGCAGGTTGGACTCTCAGG+TGG | 0.615800 | 1.2:+82483538 | MS.gene065100:intron |
| CTTCTGCTGCTGTTATCGGA+GGG | 0.621384 | 1.2:+82483223 | MS.gene065100:CDS |
| AGATGAAAACCCATTTGGCG+TGG | 0.640914 | 1.2:+82482901 | MS.gene065100:CDS |
| ATGACCGTTCTATCTGAGAT+CGG | 0.650836 | 1.2:+82480639 | MS.gene065100:CDS |
| TTCTTACTATCAAAGCTGCG+AGG | 0.724515 | 1.2:-82481271 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATAATTGAAAAAACA+AGG | - | chr1.2:82480702-82480721 | None:intergenic | 10.0% |
| !!! | ATTTTTATATTTGTTTGATT+AGG | + | chr1.2:82480596-82480615 | MS.gene065100:intron | 10.0% |
| !!! | TTTTTATATTTGTTTGATTA+GGG | + | chr1.2:82480597-82480616 | MS.gene065100:intron | 10.0% |
| !! | AATTATTAGTTGTTTATTAC+AGG | + | chr1.2:82483184-82483203 | MS.gene065100:intron | 15.0% |
| !! | ATTATTAGTTGTTTATTACA+GGG | + | chr1.2:82483185-82483204 | MS.gene065100:intron | 15.0% |
| !! | GAAATTACTTGAATTAAAAA+AGG | - | chr1.2:82483353-82483372 | None:intergenic | 15.0% |
| !!! | ATTAAATAATATTGACTGTT+TGG | + | chr1.2:82481183-82481202 | MS.gene065100:intron | 15.0% |
| !!! | CTATAATTCAAAATTTTACA+AGG | - | chr1.2:82481413-82481432 | None:intergenic | 15.0% |
| !!! | CTTGTAAAATTTTGAATTAT+AGG | + | chr1.2:82481411-82481430 | MS.gene065100:intron | 15.0% |
| !!! | TTTCATTTTCTTGTATATAT+TGG | + | chr1.2:82482803-82482822 | MS.gene065100:intron | 15.0% |
| !! | AAAAACAAAGATAACAAATC+TGG | - | chr1.2:82481349-82481368 | None:intergenic | 20.0% |
| !! | AAACAGAAAATGAAAAATTG+AGG | - | chr1.2:82480557-82480576 | None:intergenic | 20.0% |
| !! | AACTTATTCATACTTTGAAT+AGG | + | chr1.2:82482371-82482390 | MS.gene065100:intron | 20.0% |
| !! | AGTAAATGAAAAAGAAGTAA+TGG | + | chr1.2:82483396-82483415 | MS.gene065100:intron | 20.0% |
| !! | ATTACTTGAATTAAAAAAGG+TGG | - | chr1.2:82483350-82483369 | None:intergenic | 20.0% |
| !! | CAAATATATCTTTAACCATT+TGG | - | chr1.2:82482277-82482296 | None:intergenic | 20.0% |
| !! | CAAATGGTTAAAGATATATT+TGG | + | chr1.2:82482275-82482294 | MS.gene065100:intron | 20.0% |
| !! | GTATAATTCCTGAAATTAAA+GGG | + | chr1.2:82481042-82481061 | MS.gene065100:intron | 20.0% |
| !! | TATAATTCCTGAAATTAAAG+GGG | + | chr1.2:82481043-82481062 | MS.gene065100:intron | 20.0% |
| !! | TATGACAAATAATGTGTATT+AGG | - | chr1.2:82482553-82482572 | None:intergenic | 20.0% |
| !! | TCAGCATGAATATATATTAT+AGG | + | chr1.2:82481614-82481633 | MS.gene065100:intron | 20.0% |
| !! | TCATTATTAGTAAAACTTCA+TGG | + | chr1.2:82480938-82480957 | MS.gene065100:intron | 20.0% |
| !! | TGTATAATTCCTGAAATTAA+AGG | + | chr1.2:82481041-82481060 | MS.gene065100:intron | 20.0% |
| !! | TTAAAAAAGGTGGAAAAAAA+AGG | - | chr1.2:82483340-82483359 | None:intergenic | 20.0% |
| !! | TTATTAGTTGTTTATTACAG+GGG | + | chr1.2:82483186-82483205 | MS.gene065100:intron | 20.0% |
| !! | TTCATTAGAAATGTATAATC+AGG | - | chr1.2:82481834-82481853 | None:intergenic | 20.0% |
| !! | TTCCTAATAAATTCATTTGA+TGG | + | chr1.2:82481891-82481910 | MS.gene065100:intron | 20.0% |
| !!! | AACTTTTTTTTTTGTTCAGT+TGG | + | chr1.2:82482859-82482878 | MS.gene065100:intron | 20.0% |
| !!! | AGTAGACAAAATATTTTCTA+TGG | - | chr1.2:82482236-82482255 | None:intergenic | 20.0% |
| !!! | CATTATTTGTCATATTTTTC+AGG | + | chr1.2:82482559-82482578 | MS.gene065100:intron | 20.0% |
| !!! | GGAATTCTTTTTATTGTTTT+TGG | + | chr1.2:82483559-82483578 | MS.gene065100:CDS | 20.0% |
| !!! | TATCTTTGTTTTTAAAGTAG+TGG | + | chr1.2:82481356-82481375 | MS.gene065100:intron | 20.0% |
| !!! | TTTTTAAAGTAGTGGTATTT+TGG | + | chr1.2:82481364-82481383 | MS.gene065100:intron | 20.0% |
| ! | AAAAAGGTGACAAAAACATA+TGG | - | chr1.2:82483324-82483343 | None:intergenic | 25.0% |
| ! | AAATGTTGAATACAGCATTT+AGG | - | chr1.2:82483519-82483538 | None:intergenic | 25.0% |
| ! | AAGTGAAAAGGAATCAAATT+TGG | - | chr1.2:82482705-82482724 | None:intergenic | 25.0% |
| ! | AATAGATGCAAACAATTTCT+AGG | + | chr1.2:82483431-82483450 | MS.gene065100:intron | 25.0% |
| ! | AATAGCACGAAAATCAATAA+GGG | - | chr1.2:82481689-82481708 | None:intergenic | 25.0% |
| ! | ATGCCACAAAAAAACATAAA+CGG | + | chr1.2:82482588-82482607 | MS.gene065100:CDS | 25.0% |
| ! | ATTGAGGTGAAATAATTGAT+AGG | - | chr1.2:82480541-82480560 | None:intergenic | 25.0% |
| ! | ATTGTAATTAGGACAAAGAT+TGG | + | chr1.2:82482023-82482042 | MS.gene065100:intron | 25.0% |
| ! | ATTTATTACCTGTAACAAGA+TGG | - | chr1.2:82482639-82482658 | None:intergenic | 25.0% |
| ! | GAAAATAGTCATAATCTTGA+AGG | - | chr1.2:82482998-82483017 | None:intergenic | 25.0% |
| ! | GAATTCAGTTAAATATTGCA+TGG | - | chr1.2:82482673-82482692 | None:intergenic | 25.0% |
| ! | GAGAAAAACTGAGATAAAAA+TGG | - | chr1.2:82482614-82482633 | None:intergenic | 25.0% |
| ! | GTCCATCAAATGAATTTATT+AGG | - | chr1.2:82481896-82481915 | None:intergenic | 25.0% |
| ! | TAAATGCTGTATTCAACATT+TGG | + | chr1.2:82483518-82483537 | MS.gene065100:intron | 25.0% |
| ! | TAATAGCACGAAAATCAATA+AGG | - | chr1.2:82481690-82481709 | None:intergenic | 25.0% |
| ! | TATTAGTTGTTTATTACAGG+GGG | + | chr1.2:82483187-82483206 | MS.gene065100:intron | 25.0% |
| ! | TGTGATATTTGATTACCAAA+TGG | + | chr1.2:82482259-82482278 | MS.gene065100:intron | 25.0% |
| ! | TTGTCCTAATTACAATACAA+GGG | - | chr1.2:82482019-82482038 | None:intergenic | 25.0% |
| ! | TTTATTACCTGTAACAAGAT+GGG | - | chr1.2:82482638-82482657 | None:intergenic | 25.0% |
| ! | TTTGTCCTAATTACAATACA+AGG | - | chr1.2:82482020-82482039 | None:intergenic | 25.0% |
| !! | AATAAATTCATTTGATGGAC+AGG | + | chr1.2:82481896-82481915 | MS.gene065100:intron | 25.0% |
| !! | AGATTATGACTATTTTCCTT+TGG | + | chr1.2:82483001-82483020 | MS.gene065100:intron | 25.0% |
| !! | ATAAATTCATTTGATGGACA+GGG | + | chr1.2:82481897-82481916 | MS.gene065100:intron | 25.0% |
| !!! | CAGGTATTATTTTACCTTTT+TGG | - | chr1.2:82482077-82482096 | None:intergenic | 25.0% |
| !!! | GCATTTTCTATCACTTTTTT+TGG | + | chr1.2:82482736-82482755 | MS.gene065100:CDS | 25.0% |
| !!! | GTTGGTTTTTCAACATTATT+TGG | + | chr1.2:82481955-82481974 | MS.gene065100:intron | 25.0% |
| !!! | GTTTTTGTTTTTGTTGTCTT+GGG | + | chr1.2:82481154-82481173 | MS.gene065100:intron | 25.0% |
| !!! | TATCACTTTTTTTGGTGAAT+GGG | + | chr1.2:82482744-82482763 | MS.gene065100:CDS | 25.0% |
| !!! | TGAATAGTTATTGAGTTGAT+TGG | - | chr1.2:82480827-82480846 | None:intergenic | 25.0% |
| AAAGATTGGAAGGCTAAAAA+TGG | + | chr1.2:82482037-82482056 | MS.gene065100:CDS | 30.0% | |
| AACACCCTTGTATTGTAATT+AGG | + | chr1.2:82482012-82482031 | MS.gene065100:intron | 30.0% | |
| AGCTACAAAAGATACCAAAA+AGG | + | chr1.2:82482060-82482079 | MS.gene065100:CDS | 30.0% | |
| ATCAAAGAAAAAGGATCATG+CGG | - | chr1.2:82481661-82481680 | None:intergenic | 30.0% | |
| ATTACGACGTTCTTATTCTT+CGG | + | chr1.2:82481739-82481758 | MS.gene065100:CDS | 30.0% | |
| ATTCTAATTTACCACACTAC+TGG | + | chr1.2:82483466-82483485 | MS.gene065100:intron | 30.0% | |
| ATTTGATGCTTTCTTGCTAA+TGG | + | chr1.2:82481132-82481151 | MS.gene065100:intron | 30.0% | |
| GTTAATGAAGAAACAAATGC+AGG | - | chr1.2:82483030-82483049 | None:intergenic | 30.0% | |
| TAAGAAATTTGTAGCACCTT+AGG | - | chr1.2:82483152-82483171 | None:intergenic | 30.0% | |
| TAATTAGGACAAAGATTGGA+AGG | + | chr1.2:82482027-82482046 | MS.gene065100:intron | 30.0% | |
| TGATGCTTATTTCAAGATAC+TGG | + | chr1.2:82481211-82481230 | MS.gene065100:intron | 30.0% | |
| TGCTACAAATTTCTTAGAAG+AGG | + | chr1.2:82483156-82483175 | MS.gene065100:intron | 30.0% | |
| ! | AGAAGTAATGGAAAACTTGA+TGG | + | chr1.2:82483408-82483427 | MS.gene065100:intron | 30.0% |
| ! | AGTAGTGCAATTGAAGATTT+TGG | - | chr1.2:82482428-82482447 | None:intergenic | 30.0% |
| ! | ATCTCAGATTTCTGAAAAAG+TGG | + | chr1.2:82483257-82483276 | MS.gene065100:CDS | 30.0% |
| !! | GTATAATCAGGTTGATATGA+GGG | - | chr1.2:82481822-82481841 | None:intergenic | 30.0% |
| !! | TGATGATTCTGAAGTTAAAC+CGG | - | chr1.2:82481501-82481520 | None:intergenic | 30.0% |
| !! | TGTATAATCAGGTTGATATG+AGG | - | chr1.2:82481823-82481842 | None:intergenic | 30.0% |
| !!! | ATCACTTTTTTTGGTGAATG+GGG | + | chr1.2:82482745-82482764 | MS.gene065100:CDS | 30.0% |
| !!! | CTATCACTTTTTTTGGTGAA+TGG | + | chr1.2:82482743-82482762 | MS.gene065100:CDS | 30.0% |
| !!! | GGTTTTTGTTTTTGTTGTCT+TGG | + | chr1.2:82481153-82481172 | MS.gene065100:intron | 30.0% |
| AAAGAGGCTATATTTGGAGA+AGG | + | chr1.2:82481781-82481800 | MS.gene065100:CDS | 35.0% | |
| AAGAGGCTATATTTGGAGAA+GGG | + | chr1.2:82481782-82481801 | MS.gene065100:CDS | 35.0% | |
| ACAATTCTCTCTGTTCTTGT+TGG | + | chr1.2:82481439-82481458 | MS.gene065100:CDS | 35.0% | |
| ACAGATATGTCTTATGCCTA+AGG | + | chr1.2:82483133-82483152 | MS.gene065100:intron | 35.0% | |
| AGAGTGTAGTGTTTGTTTAG+AGG | + | chr1.2:82483098-82483117 | MS.gene065100:intron | 35.0% | |
| AGAGTGTGATATGATATCTG+AGG | - | chr1.2:82480749-82480768 | None:intergenic | 35.0% | |
| AGGGAGGAAATCAAAGAAAA+AGG | - | chr1.2:82481670-82481689 | None:intergenic | 35.0% | |
| ATCAAAAGAGTGAAACATGG+AGG | - | chr1.2:82482138-82482157 | None:intergenic | 35.0% | |
| CAGCACAGATTTAATTAGAC+AGG | - | chr1.2:82482096-82482115 | None:intergenic | 35.0% | |
| CTTAATCTTTACCAGTAGTG+TGG | - | chr1.2:82483480-82483499 | None:intergenic | 35.0% | |
| GAGATCAAAAGAGTGAAACA+TGG | - | chr1.2:82482141-82482160 | None:intergenic | 35.0% | |
| GAGTGCAAAAAAACTCAACT+CGG | - | chr1.2:82481870-82481889 | None:intergenic | 35.0% | |
| GGCGTTATTTAACTCTTGTT+TGG | + | chr1.2:82481635-82481654 | MS.gene065100:intron | 35.0% | |
| TACACTCTTTCACATTTGCA+AGG | - | chr1.2:82483086-82483105 | None:intergenic | 35.0% | |
| TAGGAACTTCAAATCTTGCA+AGG | + | chr1.2:82482390-82482409 | MS.gene065100:intron | 35.0% | |
| TCCAAATATAGCCTCTTTCA+AGG | - | chr1.2:82481779-82481798 | None:intergenic | 35.0% | |
| TCCTTGAAAGAGGCTATATT+TGG | + | chr1.2:82481775-82481794 | MS.gene065100:CDS | 35.0% | |
| TGTTATCTTATCGTGACTTG+TGG | + | chr1.2:82481554-82481573 | MS.gene065100:intron | 35.0% | |
| TTACGACGTTCTTATTCTTC+GGG | + | chr1.2:82481740-82481759 | MS.gene065100:CDS | 35.0% | |
| ! | ATTAGCACCCCTTTAATTTC+AGG | - | chr1.2:82481053-82481072 | None:intergenic | 35.0% |
| ! | GTTCTGTTGTTGTAGTTCTA+AGG | - | chr1.2:82482306-82482325 | None:intergenic | 35.0% |
| ! | GTTTTCTAACTATCCTTACC+TGG | - | chr1.2:82482780-82482799 | None:intergenic | 35.0% |
| !! | ATAACAGCTCTGAACGATAT+AGG | - | chr1.2:82481540-82481559 | None:intergenic | 35.0% |
| !!! | TAAGACTTTTTTTGCAGCTG+CGG | + | chr1.2:82480665-82480684 | MS.gene065100:CDS | 35.0% |
| !!! | TGGCCGTTTATGTTTTTTTG+TGG | - | chr1.2:82482594-82482613 | None:intergenic | 35.0% |
| AAAAGAATGCCCACCAGATT+TGG | - | chr1.2:82481475-82481494 | None:intergenic | 40.0% | |
| AAACAAATGCAGGCAACCAA+AGG | - | chr1.2:82483020-82483039 | None:intergenic | 40.0% | |
| ACAACACTTCCAGCAAAGTT+AGG | - | chr1.2:82480965-82480984 | None:intergenic | 40.0% | |
| AGCACGAAAATCAATAAGGG+AGG | - | chr1.2:82481686-82481705 | None:intergenic | 40.0% | |
| ATCACCGATCTCAGATAGAA+CGG | - | chr1.2:82480646-82480665 | None:intergenic | 40.0% | |
| CAACACTTCCAGCAAAGTTA+GGG | - | chr1.2:82480964-82480983 | None:intergenic | 40.0% | |
| CGACTGAAGAAAGGAATGAT+TGG | - | chr1.2:82483588-82483607 | None:intergenic | 40.0% | |
| GATAGAAAATGCCTGCAGAA+TGG | - | chr1.2:82482728-82482747 | None:intergenic | 40.0% | |
| GTATTCAACATTTGGCAGGT+TGG | + | chr1.2:82483526-82483545 | MS.gene065100:intron | 40.0% | |
| TATGCAGATCTCTCGTAGTT+GGG | + | chr1.2:82481708-82481727 | MS.gene065100:intron | 40.0% | |
| TGCTGTATTCAACATTTGGC+AGG | + | chr1.2:82483522-82483541 | MS.gene065100:intron | 40.0% | |
| TGTACTTCTGCTGCTGTTAT+CGG | + | chr1.2:82483219-82483238 | MS.gene065100:CDS | 40.0% | |
| TTATGCAGATCTCTCGTAGT+TGG | + | chr1.2:82481707-82481726 | MS.gene065100:intron | 40.0% | |
| TTCATCTGCAGCTAAACCTA+TGG | - | chr1.2:82482888-82482907 | None:intergenic | 40.0% | |
| TTCTCTCTGTTCTTGTTGGT+TGG | + | chr1.2:82481443-82481462 | MS.gene065100:CDS | 40.0% | |
| TTCTTACTATCAAAGCTGCG+AGG | - | chr1.2:82481274-82481293 | None:intergenic | 40.0% | |
| TTTCTCTCCCATCTTGTTAC+AGG | + | chr1.2:82482628-82482647 | MS.gene065100:CDS | 40.0% | |
| TTTGTTCAGTTGGCTACCAT+AGG | + | chr1.2:82482869-82482888 | MS.gene065100:intron | 40.0% | |
| ! | ACGTTCTTATTCTTCGGGTT+TGG | + | chr1.2:82481745-82481764 | MS.gene065100:CDS | 40.0% |
| ! | ATGACCGTTCTATCTGAGAT+CGG | + | chr1.2:82480639-82480658 | MS.gene065100:CDS | 40.0% |
| ! | TCTCTCTGTTCTTGTTGGTT+GGG | + | chr1.2:82481444-82481463 | MS.gene065100:CDS | 40.0% |
| !! | ATCTGAGGTAGTTTGAGTTG+AGG | - | chr1.2:82480734-82480753 | None:intergenic | 40.0% |
| AGATGAAAACCCATTTGGCG+TGG | + | chr1.2:82482901-82482920 | MS.gene065100:CDS | 45.0% | |
| ATGACCGCACATCGTCTTAA+GGG | - | chr1.2:82482191-82482210 | None:intergenic | 45.0% | |
| CCTGCAGAATGGAAGTGAAA+AGG | - | chr1.2:82482717-82482736 | None:intergenic | 45.0% | |
| GAAGTTGAAGCTGAACTGGT+TGG | + | chr1.2:82481937-82481956 | MS.gene065100:intron | 45.0% | |
| GATCTCAGATAGAACGGTCA+TGG | - | chr1.2:82480640-82480659 | None:intergenic | 45.0% | |
| GCTGCAGATGAAAACCCATT+TGG | + | chr1.2:82482896-82482915 | MS.gene065100:CDS | 45.0% | |
| TATGACCGCACATCGTCTTA+AGG | - | chr1.2:82482192-82482211 | None:intergenic | 45.0% | |
| TTGGAGGGATTCTGTGAGTT+TGG | + | chr1.2:82482927-82482946 | MS.gene065100:intron | 45.0% | |
| ! | CCTTTTCACTTCCATTCTGC+AGG | + | chr1.2:82482714-82482733 | MS.gene065100:intron | 45.0% |
| ! | TATTCTTCGGGTTTGGACTG+TGG | + | chr1.2:82481752-82481771 | MS.gene065100:CDS | 45.0% |
| ! | TTTGATGGACAGGGAATCAG+AGG | + | chr1.2:82481906-82481925 | MS.gene065100:intron | 45.0% |
| !!! | TGGTGGGCATTCTTTTTTGC+CGG | + | chr1.2:82481479-82481498 | MS.gene065100:intron | 45.0% |
| AACCCATTTGGCGTGGTTCT+TGG | + | chr1.2:82482908-82482927 | MS.gene065100:CDS | 50.0% | |
| ACTTCTGCTGCTGTTATCGG+AGG | + | chr1.2:82483222-82483241 | MS.gene065100:CDS | 50.0% | |
| CAGTCCCTTAAGACGATGTG+CGG | + | chr1.2:82482184-82482203 | MS.gene065100:intron | 50.0% | |
| CATTTGGCGTGGTTCTTGGA+GGG | + | chr1.2:82482912-82482931 | MS.gene065100:CDS | 50.0% | |
| CGAGGCAACCTGTTAAGACA+AGG | - | chr1.2:82481256-82481275 | None:intergenic | 50.0% | |
| CTCCAAGAACCACGCCAAAT+GGG | - | chr1.2:82482913-82482932 | None:intergenic | 50.0% | |
| CTTCATGGCCCTAACTTTGC+TGG | + | chr1.2:82480953-82480972 | MS.gene065100:intron | 50.0% | |
| CTTCTGCTGCTGTTATCGGA+GGG | + | chr1.2:82483223-82483242 | MS.gene065100:CDS | 50.0% | |
| GGCTGAAGTTGAAGCTGAAC+TGG | + | chr1.2:82481933-82481952 | MS.gene065100:CDS | 50.0% | |
| TGGACTGTGGTCCTTGAAAG+AGG | + | chr1.2:82481765-82481784 | MS.gene065100:CDS | 50.0% | |
| ! | ATTTGGCAGGTTGGACTCTC+AGG | + | chr1.2:82483535-82483554 | MS.gene065100:intron | 50.0% |
| !! | CTGTTAAGACAAGGCGTCGT+GGG | - | chr1.2:82481247-82481266 | None:intergenic | 50.0% |
| CCACGACGCCTTGTCTTAAC+AGG | + | chr1.2:82481245-82481264 | MS.gene065100:CDS | 55.0% | |
| CCATTTGGCGTGGTTCTTGG+AGG | + | chr1.2:82482911-82482930 | MS.gene065100:CDS | 55.0% | |
| CCTCCAAGAACCACGCCAAA+TGG | - | chr1.2:82482914-82482933 | None:intergenic | 55.0% | |
| GGACAGGGAATCAGAGGAGT+TGG | + | chr1.2:82481912-82481931 | MS.gene065100:intron | 55.0% | |
| TGAATGGGGTGACAAGAGCC+AGG | + | chr1.2:82482759-82482778 | MS.gene065100:CDS | 55.0% | |
| TGGGCTGCTCCAAATCTGGT+GGG | + | chr1.2:82481463-82481482 | MS.gene065100:intron | 55.0% | |
| TGGTTGGGCTGCTCCAAATC+TGG | + | chr1.2:82481459-82481478 | MS.gene065100:CDS | 55.0% | |
| TTGGGCTGCTCCAAATCTGG+TGG | + | chr1.2:82481462-82481481 | MS.gene065100:intron | 55.0% | |
| !! | CCTGTTAAGACAAGGCGTCG+TGG | - | chr1.2:82481248-82481267 | None:intergenic | 55.0% |
| GGGGTGACAAGAGCCAGGTA+AGG | + | chr1.2:82482764-82482783 | MS.gene065100:intron | 60.0% | |
| ! | TGGCAGGTTGGACTCTCAGG+TGG | + | chr1.2:82483538-82483557 | MS.gene065100:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 82480511 | 82483612 | 82480511 | ID=MS.gene065100 |
| chr1.2 | mRNA | 82480511 | 82483612 | 82480511 | ID=MS.gene065100.t1;Parent=MS.gene065100 |
| chr1.2 | exon | 82480511 | 82480528 | 82480511 | ID=MS.gene065100.t1.exon1;Parent=MS.gene065100.t1 |
| chr1.2 | CDS | 82480511 | 82480528 | 82480511 | ID=cds.MS.gene065100.t1;Parent=MS.gene065100.t1 |
| chr1.2 | exon | 82480618 | 82480686 | 82480618 | ID=MS.gene065100.t1.exon2;Parent=MS.gene065100.t1 |
| chr1.2 | CDS | 82480618 | 82480686 | 82480618 | ID=cds.MS.gene065100.t1;Parent=MS.gene065100.t1 |
| chr1.2 | exon | 82481227 | 82481286 | 82481227 | ID=MS.gene065100.t1.exon3;Parent=MS.gene065100.t1 |
| chr1.2 | CDS | 82481227 | 82481286 | 82481227 | ID=cds.MS.gene065100.t1;Parent=MS.gene065100.t1 |
| chr1.2 | exon | 82481433 | 82481480 | 82481433 | ID=MS.gene065100.t1.exon4;Parent=MS.gene065100.t1 |
| chr1.2 | CDS | 82481433 | 82481480 | 82481433 | ID=cds.MS.gene065100.t1;Parent=MS.gene065100.t1 |
| chr1.2 | exon | 82481715 | 82481803 | 82481715 | ID=MS.gene065100.t1.exon5;Parent=MS.gene065100.t1 |
| chr1.2 | CDS | 82481715 | 82481803 | 82481715 | ID=cds.MS.gene065100.t1;Parent=MS.gene065100.t1 |
| chr1.2 | exon | 82481918 | 82481954 | 82481918 | ID=MS.gene065100.t1.exon6;Parent=MS.gene065100.t1 |
| chr1.2 | CDS | 82481918 | 82481954 | 82481918 | ID=cds.MS.gene065100.t1;Parent=MS.gene065100.t1 |
| chr1.2 | exon | 82482034 | 82482081 | 82482034 | ID=MS.gene065100.t1.exon7;Parent=MS.gene065100.t1 |
| chr1.2 | CDS | 82482034 | 82482081 | 82482034 | ID=cds.MS.gene065100.t1;Parent=MS.gene065100.t1 |
| chr1.2 | exon | 82482581 | 82482649 | 82482581 | ID=MS.gene065100.t1.exon8;Parent=MS.gene065100.t1 |
| chr1.2 | CDS | 82482581 | 82482649 | 82482581 | ID=cds.MS.gene065100.t1;Parent=MS.gene065100.t1 |
| chr1.2 | exon | 82482736 | 82482780 | 82482736 | ID=MS.gene065100.t1.exon9;Parent=MS.gene065100.t1 |
| chr1.2 | CDS | 82482736 | 82482780 | 82482736 | ID=cds.MS.gene065100.t1;Parent=MS.gene065100.t1 |
| chr1.2 | exon | 82482878 | 82482939 | 82482878 | ID=MS.gene065100.t1.exon10;Parent=MS.gene065100.t1 |
| chr1.2 | CDS | 82482878 | 82482939 | 82482878 | ID=cds.MS.gene065100.t1;Parent=MS.gene065100.t1 |
| chr1.2 | exon | 82483206 | 82483278 | 82483206 | ID=MS.gene065100.t1.exon11;Parent=MS.gene065100.t1 |
| chr1.2 | CDS | 82483206 | 82483278 | 82483206 | ID=cds.MS.gene065100.t1;Parent=MS.gene065100.t1 |
| chr1.2 | exon | 82483544 | 82483612 | 82483544 | ID=MS.gene065100.t1.exon12;Parent=MS.gene065100.t1 |
| chr1.2 | CDS | 82483544 | 82483612 | 82483544 | ID=cds.MS.gene065100.t1;Parent=MS.gene065100.t1 |
| Gene Sequence |
| Protein sequence |
