Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029368.t1 | XP_013470223.1 | 93.5 | 200 | 12 | 1 | 1 | 200 | 7 | 205 | 1.40E-95 | 359 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029368.t1 | Q9SX28 | 73.5 | 200 | 51 | 2 | 1 | 200 | 7 | 204 | 1.7e-73 | 276.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029368.t1 | I3SF71 | 93.5 | 200 | 12 | 1 | 1 | 200 | 7 | 205 | 1.0e-95 | 359.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene029368 | MS.gene065100 | PPI |
| MS.gene029365 | MS.gene029368 | PPI |
| MS.gene029368 | MS.gene029365 | PPI |
| MS.gene029366 | MS.gene029368 | PPI |
| MS.gene76270 | MS.gene029368 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029368.t1 | MTR_1g111390 | 93.500 | 200 | 12 | 1 | 1 | 200 | 7 | 205 | 4.37e-122 | 345 |
| MS.gene029368.t1 | MTR_7g079850 | 40.704 | 199 | 104 | 2 | 2 | 200 | 76 | 260 | 3.41e-38 | 133 |
| MS.gene029368.t1 | MTR_1g046730 | 36.538 | 208 | 109 | 7 | 1 | 200 | 151 | 343 | 6.07e-24 | 97.4 |
| MS.gene029368.t1 | MTR_5g009810 | 29.187 | 209 | 121 | 5 | 1 | 200 | 138 | 328 | 1.42e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029368.t1 | AT1G68650 | 73.500 | 200 | 51 | 2 | 1 | 200 | 7 | 204 | 4.13e-91 | 266 |
| MS.gene029368.t1 | AT1G25520 | 73.134 | 201 | 52 | 2 | 1 | 200 | 7 | 206 | 2.11e-90 | 265 |
| MS.gene029368.t1 | AT5G36290 | 39.000 | 200 | 103 | 3 | 4 | 200 | 87 | 270 | 1.20e-35 | 127 |
| MS.gene029368.t1 | AT5G36290 | 39.000 | 200 | 103 | 3 | 4 | 200 | 87 | 270 | 1.20e-35 | 127 |
| MS.gene029368.t1 | AT4G13590 | 36.493 | 211 | 105 | 6 | 1 | 200 | 145 | 337 | 2.27e-26 | 103 |
| MS.gene029368.t1 | AT4G13590 | 36.493 | 211 | 105 | 6 | 1 | 200 | 145 | 337 | 2.54e-26 | 103 |
| MS.gene029368.t1 | AT1G64150 | 30.093 | 216 | 109 | 5 | 1 | 200 | 158 | 347 | 2.44e-13 | 67.8 |
Find 45 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTGAAAGAGGCTATATT+TGG | 0.236172 | 1.4:-85168567 | MS.gene029368:CDS |
| TTTCTCTCCCATCTTGTTAC+AGG | 0.249070 | 1.4:-85167720 | MS.gene029368:intron |
| TTCTCTCTGTTCTTGTTGGT+TGG | 0.281934 | 1.4:-85168899 | MS.gene029368:CDS |
| AACCCATTTGGCGTGGTTCT+TGG | 0.294089 | 1.4:-85167441 | MS.gene029368:CDS |
| TGTACTTCTGCTGCTGTTAT+CGG | 0.295744 | 1.4:-85167130 | MS.gene029368:CDS |
| AAAAGAATGCTCACCAGATT+TGG | 0.305070 | 1.4:+85168870 | None:intergenic |
| ATTACGACGTTCTTATTCTT+CGG | 0.306446 | 1.4:-85168603 | MS.gene029368:CDS |
| ACAATTCTCTCTGTTCTTGT+TGG | 0.313902 | 1.4:-85168903 | MS.gene029368:CDS |
| CCACGACGCCTTGTCTTAAC+AGG | 0.314905 | 1.4:-85169074 | MS.gene029368:CDS |
| TGGTTGGGCTGCTCCAAATC+TGG | 0.336034 | 1.4:-85168883 | MS.gene029368:intron |
| TCTCTCTGTTCTTGTTGGTT+GGG | 0.349163 | 1.4:-85168898 | MS.gene029368:CDS |
| TTACGACGTTCTTATTCTTC+GGG | 0.364759 | 1.4:-85168602 | MS.gene029368:CDS |
| ATTGTAATTAGGACAAAGAT+TGG | 0.389163 | 1.4:-85168320 | MS.gene029368:intron |
| TATTCTTCGGGTTTGGACTT+TGG | 0.392999 | 1.4:-85168590 | MS.gene029368:CDS |
| CCTCCAAGAACCACGCCAAA+TGG | 0.394458 | 1.4:+85167438 | None:intergenic |
| ACGTTCTTATTCTTCGGGTT+TGG | 0.403780 | 1.4:-85168597 | MS.gene029368:CDS |
| GGCTGAAGTTGAAGCTGAAC+TGG | 0.424673 | 1.4:-85168410 | MS.gene029368:intron |
| TCCAAATATAGCCTCTTTCA+AGG | 0.428412 | 1.4:+85168566 | None:intergenic |
| AGCTACAAAAGATACCAAAA+AGG | 0.435268 | 1.4:-85168283 | MS.gene029368:intron |
| GCTGCAGATGAAAACCCATT+TGG | 0.436487 | 1.4:-85167453 | MS.gene029368:CDS |
| TTATGCAGATCTCTCGTAGT+TGG | 0.455915 | 1.4:-85168635 | MS.gene029368:intron |
| TATGCAGATCTCTCGTAGTT+GGG | 0.473253 | 1.4:-85168634 | MS.gene029368:intron |
| CCATTTGGCGTGGTTCTTGG+AGG | 0.480629 | 1.4:-85167438 | MS.gene029368:CDS |
| TTCATCTGCAGCTAAACCTA+TGG | 0.483168 | 1.4:+85167464 | None:intergenic |
| ATTTATTACCTGTAACAAGA+TGG | 0.486365 | 1.4:+85167712 | None:intergenic |
| CATTTGGCGTGGTTCTTGGA+GGG | 0.488586 | 1.4:-85167437 | MS.gene029368:CDS |
| TTTGTTCAGTTGGCTACCAT+AGG | 0.495409 | 1.4:-85167480 | MS.gene029368:intron |
| TGGACTTTGGTCCTTGAAAG+AGG | 0.497549 | 1.4:-85168577 | MS.gene029368:CDS |
| CTCCAAGAACCACGCCAAAT+GGG | 0.499798 | 1.4:+85167439 | None:intergenic |
| TTTATTACCTGTAACAAGAT+GGG | 0.502150 | 1.4:+85167713 | None:intergenic |
| GGACAGGGAATCAGAGGAGT+TGG | 0.506438 | 1.4:-85168431 | MS.gene029368:intron |
| AAAGAGGCTATATTTGGAGA+AGG | 0.530172 | 1.4:-85168561 | MS.gene029368:CDS |
| AAGAGGCTATATTTGGAGAA+GGG | 0.538449 | 1.4:-85168560 | MS.gene029368:intron |
| TGAATGGGGTGACAAGAGCC+AGG | 0.563011 | 1.4:-85167589 | MS.gene029368:intron |
| TTTGATGGACAGGGAATCAG+AGG | 0.572662 | 1.4:-85168437 | MS.gene029368:intron |
| TAATTAGGACAAAGATTGGA+AGG | 0.578900 | 1.4:-85168316 | MS.gene029368:intron |
| ACTTCTGCTGCTGTTATCGG+AGG | 0.588680 | 1.4:-85167127 | MS.gene029368:CDS |
| GATCTCAGAGAGAACGGTCA+TGG | 0.590501 | 1.4:+85169649 | None:intergenic |
| ATGACCGTTCTCTCTGAGAT+CGG | 0.592001 | 1.4:-85169647 | MS.gene029368:CDS |
| CGAGGCAACCTGTTAAGACA+AGG | 0.611382 | 1.4:+85169066 | None:intergenic |
| ATCACCGATCTCAGAGAGAA+CGG | 0.615665 | 1.4:+85169643 | None:intergenic |
| CTTCTGCTGCTGTTATCGGA+GGG | 0.621384 | 1.4:-85167126 | MS.gene029368:CDS |
| AGATGAAAACCCATTTGGCG+TGG | 0.640914 | 1.4:-85167448 | MS.gene029368:CDS |
| CCTGTTAAGACAAGGCGTCG+TGG | 0.660714 | 1.4:+85169074 | None:intergenic |
| TTCTTACTATCAAAGCTGCG+AGG | 0.724515 | 1.4:+85169048 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTAGTTGTTTATTAC+AGG | - | chr1.4:85169597-85169616 | MS.gene029368:intron | 15.0% |
| !! | ATTATTAGTTGTTTATTACA+GGG | - | chr1.4:85169598-85169617 | MS.gene029368:intron | 15.0% |
| !!! | TTTCATTTTCTTGTATATAT+TGG | - | chr1.4:85169217-85169236 | MS.gene029368:intron | 15.0% |
| !! | AAAAACAAAGATAACAAATC+TGG | + | chr1.4:85167781-85167800 | None:intergenic | 20.0% |
| !! | AACTTATTCATACTTTGAAT+AGG | - | chr1.4:85168785-85168804 | MS.gene029368:intron | 20.0% |
| !! | AATAGCATGAAAATCAATAA+GGG | + | chr1.4:85168109-85168128 | None:intergenic | 20.0% |
| !! | AGATAACAAATATATCAAAC+AGG | - | chr1.4:85167569-85167588 | MS.gene029368:intron | 20.0% |
| !! | ATCAAAGAAAAAAGATAATG+CGG | + | chr1.4:85168081-85168100 | None:intergenic | 20.0% |
| !! | ATTCAGTTACAATTCATTAT+TGG | - | chr1.4:85167358-85167377 | MS.gene029368:intron | 20.0% |
| !! | CAAATATATCTTTAACCATT+TGG | + | chr1.4:85168691-85168710 | None:intergenic | 20.0% |
| !! | CAAATGGTTAAAGATATATT+TGG | - | chr1.4:85168689-85168708 | MS.gene029368:intron | 20.0% |
| !! | CTTGTAAAATTTCGAATTAT+AGG | - | chr1.4:85167831-85167850 | MS.gene029368:intron | 20.0% |
| !! | GAGTTTCAATTTCAAATATT+AGG | - | chr1.4:85167415-85167434 | MS.gene029368:intron | 20.0% |
| !! | TAATAGCATGAAAATCAATA+AGG | + | chr1.4:85168110-85168129 | None:intergenic | 20.0% |
| !! | TATGACAAATAATGTGTATT+AGG | + | chr1.4:85168967-85168986 | None:intergenic | 20.0% |
| !! | TTATTAGTTGTTTATTACAG+GGG | - | chr1.4:85169599-85169618 | MS.gene029368:intron | 20.0% |
| !! | TTCATTAGAAATGTATAATC+AGG | + | chr1.4:85168254-85168273 | None:intergenic | 20.0% |
| !! | TTCGTAATAAATTCATTTGA+TGG | - | chr1.4:85168310-85168329 | MS.gene029368:CDS | 20.0% |
| !!! | AGTAGACAAAATATTTTCTA+TGG | + | chr1.4:85168650-85168669 | None:intergenic | 20.0% |
| !!! | CATTATTTGTCATATTTTTC+AGG | - | chr1.4:85168973-85168992 | MS.gene029368:intron | 20.0% |
| !!! | CTATAATTCGAAATTTTACA+AGG | + | chr1.4:85167833-85167852 | None:intergenic | 20.0% |
| !!! | TAACTTTTTTTTTGTTCAGT+TGG | - | chr1.4:85169272-85169291 | MS.gene029368:intron | 20.0% |
| !!! | TATCTTTGTTTTTAAAGTAG+TGG | - | chr1.4:85167788-85167807 | MS.gene029368:intron | 20.0% |
| !!! | TGAATATTTATTGAGTTGAT+TGG | + | chr1.4:85167285-85167304 | None:intergenic | 20.0% |
| ! | AACAAATATATCAAACAGGA+AGG | - | chr1.4:85167573-85167592 | MS.gene029368:intron | 25.0% |
| ! | AAGTGAAAAGGAATCAAATT+TGG | + | chr1.4:85169119-85169138 | None:intergenic | 25.0% |
| ! | ACAAATATATCAAACAGGAA+GGG | - | chr1.4:85167574-85167593 | MS.gene029368:intron | 25.0% |
| ! | ATGCCACAAAAAAACATAAA+CGG | - | chr1.4:85169002-85169021 | MS.gene029368:intron | 25.0% |
| ! | ATTGTAATTAGGACAAAGAT+TGG | - | chr1.4:85168442-85168461 | MS.gene029368:intron | 25.0% |
| ! | ATTTATTACCTGTAACAAGA+TGG | + | chr1.4:85169053-85169072 | None:intergenic | 25.0% |
| ! | CATAATTCCTAAAATTGAAG+GGG | - | chr1.4:85167463-85167482 | MS.gene029368:CDS | 25.0% |
| ! | GAAAATAGTCATAATCTTGA+AGG | + | chr1.4:85169411-85169430 | None:intergenic | 25.0% |
| ! | GAATTCAGTTAAATATTGCA+TGG | + | chr1.4:85169087-85169106 | None:intergenic | 25.0% |
| ! | GAGAAAAACTGAGATAAAAA+TGG | + | chr1.4:85169028-85169047 | None:intergenic | 25.0% |
| ! | GCATAATTCCTAAAATTGAA+GGG | - | chr1.4:85167462-85167481 | MS.gene029368:CDS | 25.0% |
| ! | TATTAGTTGTTTATTACAGG+GGG | - | chr1.4:85169600-85169619 | MS.gene029368:intron | 25.0% |
| ! | TCAAAGAAAAAAGATAATGC+GGG | + | chr1.4:85168080-85168099 | None:intergenic | 25.0% |
| ! | TCAGCATGAGTATATATTAT+AGG | - | chr1.4:85168034-85168053 | MS.gene029368:intron | 25.0% |
| ! | TGCATAATTCCTAAAATTGA+AGG | - | chr1.4:85167461-85167480 | MS.gene029368:CDS | 25.0% |
| ! | TGTGATATTTGATTACCAAA+TGG | - | chr1.4:85168673-85168692 | MS.gene029368:intron | 25.0% |
| ! | TTGAGGTGAGAAAATAAATA+AGG | + | chr1.4:85167194-85167213 | None:intergenic | 25.0% |
| ! | TTGTCCTAATTACAATACAA+GGG | + | chr1.4:85168438-85168457 | None:intergenic | 25.0% |
| ! | TTTATTACCTGTAACAAGAT+GGG | + | chr1.4:85169052-85169071 | None:intergenic | 25.0% |
| ! | TTTGTCCTAATTACAATACA+AGG | + | chr1.4:85168439-85168458 | None:intergenic | 25.0% |
| !! | AATAAATTCATTTGATGGAC+AGG | - | chr1.4:85168315-85168334 | MS.gene029368:intron | 25.0% |
| !! | AGATTATGACTATTTTCCTT+TGG | - | chr1.4:85169414-85169433 | MS.gene029368:intron | 25.0% |
| !! | ATAAATTCATTTGATGGACA+GGG | - | chr1.4:85168316-85168335 | MS.gene029368:intron | 25.0% |
| !!! | CAGGTATTATTTTACCTTTT+TGG | + | chr1.4:85168496-85168515 | None:intergenic | 25.0% |
| !!! | GCATTTTCTATCACTTTTTT+TGG | - | chr1.4:85169150-85169169 | MS.gene029368:intron | 25.0% |
| !!! | GTTGGTTTTTCAACATTATT+TGG | - | chr1.4:85168374-85168393 | MS.gene029368:intron | 25.0% |
| !!! | TATCACTTTTTTTGGTGAAT+GGG | - | chr1.4:85169158-85169177 | MS.gene029368:intron | 25.0% |
| AAAAGGAATCAAATTTGGCA+TGG | + | chr1.4:85169114-85169133 | None:intergenic | 30.0% | |
| AAAGATTGGAAGGCTAAAAA+TGG | - | chr1.4:85168456-85168475 | MS.gene029368:intron | 30.0% | |
| AACACCCTTGTATTGTAATT+AGG | - | chr1.4:85168431-85168450 | MS.gene029368:intron | 30.0% | |
| AGCTACAAAAGATACCAAAA+AGG | - | chr1.4:85168479-85168498 | MS.gene029368:intron | 30.0% | |
| ATTACGACGTTCTTATTCTT+CGG | - | chr1.4:85168159-85168178 | MS.gene029368:intron | 30.0% | |
| CAAATCTGGAAAAGAAAGAA+AGG | + | chr1.4:85167767-85167786 | None:intergenic | 30.0% | |
| CAGCACAGATTTAATTAAAC+AGG | + | chr1.4:85168515-85168534 | None:intergenic | 30.0% | |
| GTTAATGAAGAAACAAATGC+AGG | + | chr1.4:85169443-85169462 | None:intergenic | 30.0% | |
| TAAGAAATTTGTAGCACCTT+AGG | + | chr1.4:85169565-85169584 | None:intergenic | 30.0% | |
| TAATTAGGACAAAGATTGGA+AGG | - | chr1.4:85168446-85168465 | MS.gene029368:intron | 30.0% | |
| TGATGCTTATTTCAAGATAC+TGG | - | chr1.4:85167655-85167674 | MS.gene029368:intron | 30.0% | |
| TGCTACAAATTTCTTAGAAG+AGG | - | chr1.4:85169569-85169588 | MS.gene029368:intron | 30.0% | |
| ! | AGTAGTGCAATTGAAGATTT+TGG | + | chr1.4:85168842-85168861 | None:intergenic | 30.0% |
| ! | ATCTCAGATTCTGAAAAAGT+GGG | - | chr1.4:85169670-85169689 | MS.gene029368:CDS | 30.0% |
| ! | ATTATCACCCCTTCAATTTT+AGG | + | chr1.4:85167473-85167492 | None:intergenic | 30.0% |
| !! | GTATAATCAGGTTGATATGA+GGG | + | chr1.4:85168242-85168261 | None:intergenic | 30.0% |
| !! | TGATGATTCTGAAGTTAAAC+CGG | + | chr1.4:85167921-85167940 | None:intergenic | 30.0% |
| !! | TGTATAATCAGGTTGATATG+AGG | + | chr1.4:85168243-85168262 | None:intergenic | 30.0% |
| !!! | ATCACTTTTTTTGGTGAATG+GGG | - | chr1.4:85169159-85169178 | MS.gene029368:intron | 30.0% |
| !!! | CTATCACTTTTTTTGGTGAA+TGG | - | chr1.4:85169157-85169176 | MS.gene029368:intron | 30.0% |
| AAAAGAATGCTCACCAGATT+TGG | + | chr1.4:85167895-85167914 | None:intergenic | 35.0% | |
| AAAGAGGCTATATTTGGAGA+AGG | - | chr1.4:85168201-85168220 | MS.gene029368:intron | 35.0% | |
| AAGAGGCTATATTTGGAGAA+GGG | - | chr1.4:85168202-85168221 | MS.gene029368:intron | 35.0% | |
| ACAATTCTCTCTGTTCTTGT+TGG | - | chr1.4:85167859-85167878 | MS.gene029368:intron | 35.0% | |
| ACAGATATGTCTTATGCCTA+AGG | - | chr1.4:85169546-85169565 | MS.gene029368:intron | 35.0% | |
| AGAGTGTAGTGTTTGTTTAG+AGG | - | chr1.4:85169511-85169530 | MS.gene029368:intron | 35.0% | |
| TACACTCTTTCACATTTGCA+AGG | + | chr1.4:85169499-85169518 | None:intergenic | 35.0% | |
| TAGGAACTTCAAATCTTGCA+AGG | - | chr1.4:85168804-85168823 | MS.gene029368:intron | 35.0% | |
| TCCAAATATAGCCTCTTTCA+AGG | + | chr1.4:85168199-85168218 | None:intergenic | 35.0% | |
| TCCTTGAAAGAGGCTATATT+TGG | - | chr1.4:85168195-85168214 | MS.gene029368:intron | 35.0% | |
| TGAGATCAAAAGAGTGAACA+TGG | + | chr1.4:85168556-85168575 | None:intergenic | 35.0% | |
| TTACGACGTTCTTATTCTTC+GGG | - | chr1.4:85168160-85168179 | MS.gene029368:intron | 35.0% | |
| ! | CATCTCAGATTCTGAAAAAG+TGG | - | chr1.4:85169669-85169688 | MS.gene029368:CDS | 35.0% |
| ! | GTTCTGTTGTTGTAGTTCTA+AGG | + | chr1.4:85168720-85168739 | None:intergenic | 35.0% |
| ! | GTTTTCTAACTATCCTTACC+TGG | + | chr1.4:85169194-85169213 | None:intergenic | 35.0% |
| !!! | TAAGACTTTTTTTGCAGCTG+CGG | - | chr1.4:85167141-85167160 | MS.gene029368:CDS | 35.0% |
| !!! | TGGCCGTTTATGTTTTTTTG+TGG | + | chr1.4:85169008-85169027 | None:intergenic | 35.0% |
| AAACAAATGCAGGCAACCAA+AGG | + | chr1.4:85169433-85169452 | None:intergenic | 40.0% | |
| GATAGAAAATGCCTGCAGAA+TGG | + | chr1.4:85169142-85169161 | None:intergenic | 40.0% | |
| GATCAAAAGAGTGAACATGG+AGG | + | chr1.4:85168553-85168572 | None:intergenic | 40.0% | |
| TATCAAACAGGAAGGGCTAA+TGG | - | chr1.4:85167581-85167600 | MS.gene029368:intron | 40.0% | |
| TATGCAGATCTCTCGTAGTT+GGG | - | chr1.4:85168128-85168147 | MS.gene029368:intron | 40.0% | |
| TGTACTTCTGCTGCTGTTAT+CGG | - | chr1.4:85169632-85169651 | MS.gene029368:CDS | 40.0% | |
| TGTTATCTTATCGTGACTCG+TGG | - | chr1.4:85167974-85167993 | MS.gene029368:intron | 40.0% | |
| TTATGCAGATCTCTCGTAGT+TGG | - | chr1.4:85168127-85168146 | MS.gene029368:intron | 40.0% | |
| TTCATCTGCAGCTAAACCTA+TGG | + | chr1.4:85169301-85169320 | None:intergenic | 40.0% | |
| TTCTCTCTGTTCTTGTTGGT+TGG | - | chr1.4:85167863-85167882 | MS.gene029368:intron | 40.0% | |
| TTCTTACTATCAAAGCTGCG+AGG | + | chr1.4:85167717-85167736 | None:intergenic | 40.0% | |
| TTTCTCTCCCATCTTGTTAC+AGG | - | chr1.4:85169042-85169061 | MS.gene029368:intron | 40.0% | |
| TTTGTTCAGTTGGCTACCAT+AGG | - | chr1.4:85169282-85169301 | MS.gene029368:intron | 40.0% | |
| ! | ACGTTCTTATTCTTCGGGTT+TGG | - | chr1.4:85168165-85168184 | MS.gene029368:intron | 40.0% |
| ! | TATTCTTCGGGTTTGGACTT+TGG | - | chr1.4:85168172-85168191 | MS.gene029368:intron | 40.0% |
| ! | TCTCTCTGTTCTTGTTGGTT+GGG | - | chr1.4:85167864-85167883 | MS.gene029368:intron | 40.0% |
| !!! | TGGTGAGCATTCTTTTTTGC+CGG | - | chr1.4:85167899-85167918 | MS.gene029368:intron | 40.0% |
| AGAGTGTGATATCTGAGCTG+AGG | + | chr1.4:85167221-85167240 | None:intergenic | 45.0% | |
| AGATGAAAACCCATTTGGCG+TGG | - | chr1.4:85169314-85169333 | MS.gene029368:intron | 45.0% | |
| ATCACCGATCTCAGAGAGAA+CGG | + | chr1.4:85167122-85167141 | None:intergenic | 45.0% | |
| ATGACCGCACATCGTCTTAA+GGG | + | chr1.4:85168605-85168624 | None:intergenic | 45.0% | |
| CCTGCAGAATGGAAGTGAAA+AGG | + | chr1.4:85169131-85169150 | None:intergenic | 45.0% | |
| GAAGTTGAAGCTGAACTGGT+TGG | - | chr1.4:85168356-85168375 | MS.gene029368:intron | 45.0% | |
| GCTGCAGATGAAAACCCATT+TGG | - | chr1.4:85169309-85169328 | MS.gene029368:intron | 45.0% | |
| TATGACCGCACATCGTCTTA+AGG | + | chr1.4:85168606-85168625 | None:intergenic | 45.0% | |
| TGGACTTTGGTCCTTGAAAG+AGG | - | chr1.4:85168185-85168204 | MS.gene029368:intron | 45.0% | |
| TTGGAGGGATTCTGTGAGTT+TGG | - | chr1.4:85169340-85169359 | MS.gene029368:intron | 45.0% | |
| ! | CCTTTTCACTTCCATTCTGC+AGG | - | chr1.4:85169128-85169147 | MS.gene029368:intron | 45.0% |
| ! | TTTGATGGACAGGGAATCAG+AGG | - | chr1.4:85168325-85168344 | MS.gene029368:intron | 45.0% |
| !! | ATGACCGTTCTCTCTGAGAT+CGG | - | chr1.4:85167115-85167134 | MS.gene029368:CDS | 45.0% |
| AACCCATTTGGCGTGGTTCT+TGG | - | chr1.4:85169321-85169340 | MS.gene029368:intron | 50.0% | |
| ACTTCTGCTGCTGTTATCGG+AGG | - | chr1.4:85169635-85169654 | MS.gene029368:CDS | 50.0% | |
| ATCTGAGCTGAGGTAGCTTG+AGG | + | chr1.4:85167211-85167230 | None:intergenic | 50.0% | |
| CAGTCCCTTAAGACGATGTG+CGG | - | chr1.4:85168598-85168617 | MS.gene029368:CDS | 50.0% | |
| CATTTGGCGTGGTTCTTGGA+GGG | - | chr1.4:85169325-85169344 | MS.gene029368:intron | 50.0% | |
| CGAGGCAACCTGTTAAGACA+AGG | + | chr1.4:85167699-85167718 | None:intergenic | 50.0% | |
| CTCCAAGAACCACGCCAAAT+GGG | + | chr1.4:85169326-85169345 | None:intergenic | 50.0% | |
| CTTCTGCTGCTGTTATCGGA+GGG | - | chr1.4:85169636-85169655 | MS.gene029368:CDS | 50.0% | |
| GATCTCAGAGAGAACGGTCA+TGG | + | chr1.4:85167116-85167135 | None:intergenic | 50.0% | |
| GGCTGAAGTTGAAGCTGAAC+TGG | - | chr1.4:85168352-85168371 | MS.gene029368:intron | 50.0% | |
| CCACGACGCCTTGTCTTAAC+AGG | - | chr1.4:85167688-85167707 | MS.gene029368:intron | 55.0% | |
| CCATTTGGCGTGGTTCTTGG+AGG | - | chr1.4:85169324-85169343 | MS.gene029368:intron | 55.0% | |
| CCTCCAAGAACCACGCCAAA+TGG | + | chr1.4:85169327-85169346 | None:intergenic | 55.0% | |
| GGACAGGGAATCAGAGGAGT+TGG | - | chr1.4:85168331-85168350 | MS.gene029368:intron | 55.0% | |
| TGAATGGGGTGACAAGAGCC+AGG | - | chr1.4:85169173-85169192 | MS.gene029368:intron | 55.0% | |
| TGGTTGGGCTGCTCCAAATC+TGG | - | chr1.4:85167879-85167898 | MS.gene029368:intron | 55.0% | |
| !! | CCTGTTAAGACAAGGCGTCG+TGG | + | chr1.4:85167691-85167710 | None:intergenic | 55.0% |
| GGGGTGACAAGAGCCAGGTA+AGG | - | chr1.4:85169178-85169197 | MS.gene029368:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 85167094 | 85169690 | 85167094 | ID=MS.gene029368 |
| chr1.4 | mRNA | 85167094 | 85169690 | 85167094 | ID=MS.gene029368.t1;Parent=MS.gene029368 |
| chr1.4 | exon | 85169618 | 85169690 | 85169618 | ID=MS.gene029368.t1.exon1;Parent=MS.gene029368.t1 |
| chr1.4 | CDS | 85169618 | 85169690 | 85169618 | ID=cds.MS.gene029368.t1;Parent=MS.gene029368.t1 |
| chr1.4 | exon | 85169055 | 85169113 | 85169055 | ID=MS.gene029368.t1.exon2;Parent=MS.gene029368.t1 |
| chr1.4 | CDS | 85169055 | 85169113 | 85169055 | ID=cds.MS.gene029368.t1;Parent=MS.gene029368.t1 |
| chr1.4 | exon | 85168884 | 85168931 | 85168884 | ID=MS.gene029368.t1.exon3;Parent=MS.gene029368.t1 |
| chr1.4 | CDS | 85168884 | 85168931 | 85168884 | ID=cds.MS.gene029368.t1;Parent=MS.gene029368.t1 |
| chr1.4 | exon | 85168561 | 85168649 | 85168561 | ID=MS.gene029368.t1.exon4;Parent=MS.gene029368.t1 |
| chr1.4 | CDS | 85168561 | 85168649 | 85168561 | ID=cds.MS.gene029368.t1;Parent=MS.gene029368.t1 |
| chr1.4 | exon | 85168411 | 85168447 | 85168411 | ID=MS.gene029368.t1.exon5;Parent=MS.gene029368.t1 |
| chr1.4 | CDS | 85168411 | 85168447 | 85168411 | ID=cds.MS.gene029368.t1;Parent=MS.gene029368.t1 |
| chr1.4 | exon | 85168284 | 85168331 | 85168284 | ID=MS.gene029368.t1.exon6;Parent=MS.gene029368.t1 |
| chr1.4 | CDS | 85168284 | 85168331 | 85168284 | ID=cds.MS.gene029368.t1;Parent=MS.gene029368.t1 |
| chr1.4 | exon | 85167721 | 85167789 | 85167721 | ID=MS.gene029368.t1.exon7;Parent=MS.gene029368.t1 |
| chr1.4 | CDS | 85167721 | 85167789 | 85167721 | ID=cds.MS.gene029368.t1;Parent=MS.gene029368.t1 |
| chr1.4 | exon | 85167590 | 85167634 | 85167590 | ID=MS.gene029368.t1.exon8;Parent=MS.gene029368.t1 |
| chr1.4 | CDS | 85167590 | 85167634 | 85167590 | ID=cds.MS.gene029368.t1;Parent=MS.gene029368.t1 |
| chr1.4 | exon | 85167432 | 85167493 | 85167432 | ID=MS.gene029368.t1.exon9;Parent=MS.gene029368.t1 |
| chr1.4 | CDS | 85167432 | 85167493 | 85167432 | ID=cds.MS.gene029368.t1;Parent=MS.gene029368.t1 |
| chr1.4 | exon | 85167094 | 85167165 | 85167094 | ID=MS.gene029368.t1.exon10;Parent=MS.gene029368.t1 |
| chr1.4 | CDS | 85167094 | 85167165 | 85167094 | ID=cds.MS.gene029368.t1;Parent=MS.gene029368.t1 |
| Gene Sequence |
| Protein sequence |
