AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029377

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029377.t1 MTR_1g111280 97.093 344 10 0 1 344 1 344 0.0 699
MS.gene029377.t1 MTR_7g406880 55.780 346 134 8 13 342 7 349 9.93e-127 367
MS.gene029377.t1 MTR_4g050140 37.231 325 184 9 25 342 4 315 1.07e-62 202
MS.gene029377.t1 MTR_4g086510 36.810 326 185 8 24 342 6 317 9.88e-59 192
MS.gene029377.t1 MTR_7g107040 37.003 327 179 10 26 342 7 316 2.09e-57 189
MS.gene029377.t1 MTR_6g464510 34.706 340 194 8 16 343 4 327 2.29e-57 189
MS.gene029377.t1 MTR_0007s0520 38.614 303 164 6 34 325 21 312 6.05e-57 188
MS.gene029377.t1 MTR_1g102170 36.190 315 181 7 24 329 27 330 6.29e-57 188
MS.gene029377.t1 MTR_1g012430 39.789 284 151 9 25 303 2 270 5.35e-56 185
MS.gene029377.t1 MTR_3g101420 36.050 319 176 9 27 331 8 312 6.17e-56 185
MS.gene029377.t1 MTR_8g035520 36.909 317 181 7 34 343 21 325 3.00e-55 184
MS.gene029377.t1 MTR_7g056207 34.831 356 197 11 8 344 12 351 6.33e-55 183
MS.gene029377.t1 MTR_6g464320 35.443 316 171 7 41 343 31 326 2.27e-54 181
MS.gene029377.t1 MTR_6g464120 38.276 290 159 5 39 319 29 307 4.02e-54 186
MS.gene029377.t1 MTR_6g464280 36.508 315 167 7 42 343 31 325 6.15e-54 180
MS.gene029377.t1 MTR_1g102160 33.951 324 182 8 34 342 19 325 5.24e-52 175
MS.gene029377.t1 MTR_8g035540 34.688 320 186 8 34 342 9 316 8.13e-51 172
MS.gene029377.t1 MTR_1g105020 32.390 318 196 9 28 335 10 318 2.52e-48 165
MS.gene029377.t1 MTR_4g086480 33.775 302 180 5 26 319 12 301 3.67e-48 165
MS.gene029377.t1 MTR_4g086470 33.813 278 169 4 29 303 14 279 1.21e-45 158
MS.gene029377.t1 MTR_8g035500 33.442 308 183 10 34 329 12 309 1.52e-45 158
MS.gene029377.t1 MTR_3g012440 32.919 322 183 10 22 320 3 314 1.40e-44 156
MS.gene029377.t1 MTR_6g065120 34.783 299 161 11 57 338 54 335 3.48e-42 150
MS.gene029377.t1 MTR_6g065400 32.450 302 173 9 52 338 48 333 9.50e-42 149
MS.gene029377.t1 MTR_8g040860 32.000 325 199 10 26 339 16 329 3.12e-41 147
MS.gene029377.t1 MTR_1g089310 38.115 244 130 6 81 321 98 323 4.56e-41 147
MS.gene029377.t1 MTR_6g065270 33.775 302 165 11 56 338 50 335 4.80e-41 147
MS.gene029377.t1 MTR_1g089310 38.115 244 130 6 81 321 114 339 4.87e-41 147
MS.gene029377.t1 MTR_3g450680 31.818 330 202 11 23 339 13 332 5.71e-41 146
MS.gene029377.t1 MTR_5g005850 33.548 310 180 13 26 321 13 310 8.91e-41 145
MS.gene029377.t1 MTR_6g065430 35.472 265 149 8 61 318 58 307 1.52e-40 145
MS.gene029377.t1 MTR_6g065110 32.581 310 179 10 46 340 42 336 3.82e-40 144
MS.gene029377.t1 MTR_6g065370 30.795 302 178 9 52 338 48 333 7.36e-40 144
MS.gene029377.t1 MTR_1g082210 32.154 311 169 9 51 342 53 340 1.14e-39 143
MS.gene029377.t1 MTR_7g093950 34.962 266 151 6 81 342 99 346 2.22e-39 142
MS.gene029377.t1 MTR_4g086540 30.341 323 187 9 24 342 16 304 2.61e-37 136
MS.gene029377.t1 MTR_1g104930 34.164 281 174 7 26 303 12 284 4.00e-36 133
MS.gene029377.t1 MTR_6g065340 31.667 300 162 9 52 338 59 328 2.37e-35 131
MS.gene029377.t1 MTR_5g005900 33.677 291 167 11 26 302 9 287 2.37e-35 131
MS.gene029377.t1 MTR_5g005920 28.402 338 212 10 15 335 2 326 2.50e-35 131
MS.gene029377.t1 MTR_7g051020 32.390 318 199 10 26 335 12 321 2.08e-34 129
MS.gene029377.t1 MTR_1g104933 34.507 284 165 8 26 303 10 278 1.73e-30 118
MS.gene029377.t1 MTR_0007s0480 41.250 160 83 4 174 325 2 158 1.05e-21 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029377.t1 AT5G16080 53.916 332 140 6 15 342 19 341 9.03e-117 342
MS.gene029377.t1 AT1G68620 51.090 321 139 5 26 342 23 329 1.39e-113 333
MS.gene029377.t1 AT5G62180 36.304 303 165 8 39 325 21 311 8.56e-55 182
MS.gene029377.t1 AT3G63010 37.091 275 133 8 68 321 69 324 1.47e-46 162
MS.gene029377.t1 AT2G45600 34.915 295 173 8 57 342 31 315 8.62e-46 159
MS.gene029377.t1 AT1G19190 33.974 312 177 11 34 333 13 307 7.26e-45 156
MS.gene029377.t1 AT2G45610 31.153 321 197 8 34 343 17 324 7.65e-45 156
MS.gene029377.t1 AT5G06570 37.748 302 172 8 26 318 25 319 1.67e-44 156
MS.gene029377.t1 AT5G06570 37.748 302 172 8 26 318 25 319 1.67e-44 156
MS.gene029377.t1 AT5G06570 37.417 302 173 8 26 318 10 304 1.73e-44 155
MS.gene029377.t1 AT5G06570 37.417 302 173 8 26 318 10 304 1.73e-44 155
MS.gene029377.t1 AT3G05120 30.952 336 188 8 25 342 32 341 1.94e-44 156
MS.gene029377.t1 AT5G27320 33.981 309 165 9 51 342 53 339 3.36e-43 152
MS.gene029377.t1 AT2G03550 33.441 311 185 9 33 336 12 307 9.29e-43 150
MS.gene029377.t1 AT3G48700 31.629 313 189 8 24 320 3 306 6.20e-42 149
MS.gene029377.t1 AT3G48690 33.218 289 175 9 24 303 3 282 8.50e-41 145
MS.gene029377.t1 AT5G23530 34.028 288 169 8 61 343 60 331 4.79e-40 144
MS.gene029377.t1 AT1G47480 30.063 316 188 9 36 342 18 309 1.49e-38 139
MS.gene029377.t1 AT1G49650 30.935 278 174 7 33 303 68 334 1.60e-38 141
MS.gene029377.t1 AT1G49660 35.294 204 121 3 24 222 3 200 6.29e-38 138
MS.gene029377.t1 AT1G49640 35.714 196 108 5 33 222 13 196 7.95e-36 132
MS.gene029377.t1 AT5G14310 29.856 278 156 7 79 321 140 413 1.05e-26 110
MS.gene029377.t1 AT3G27320 29.032 279 161 7 77 321 120 395 2.52e-23 100
MS.gene029377.t1 AT3G27320 29.032 279 161 7 77 321 152 427 3.09e-23 100

Find 61 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAGACCCTTTAAATTTAA+AGG 0.113115 1.4:+84911335 None:intergenic
TCTAAGGCCTTTAAATTTAA+AGG 0.122353 1.4:-84911342 MS.gene029377:CDS
TAGCAGCTTCAGATACTTAT+TGG 0.192800 1.4:-84911229 MS.gene029377:CDS
GTGTAATCCATTGGTGAAAA+TGG 0.278139 1.4:-84911165 MS.gene029377:CDS
TTGACAGTGTTACAAACATT+TGG 0.291499 1.4:-84911745 MS.gene029377:CDS
TTCACATGAATCTATCCTTT+TGG 0.311453 1.4:+84911373 None:intergenic
CCTGAGATTTACTTAGAATC+TGG 0.322976 1.4:+84910994 None:intergenic
GTTGAATGTGAAGTGTTTAA+AGG 0.324790 1.4:-84911032 MS.gene029377:CDS
TCTGTTGTTGAGGAAATTAA+AGG 0.325362 1.4:-84911875 MS.gene029377:CDS
TGGGATAAGGTTTAGGTTTG+AGG 0.343721 1.4:+84911934 None:intergenic
CATGTTGTGGGATAAGGTTT+AGG 0.353922 1.4:+84911927 None:intergenic
CTAAGGCCTTTAAATTTAAA+GGG 0.355632 1.4:-84911341 MS.gene029377:CDS
CATGTGAAGGTGCATTTCTA+AGG 0.401620 1.4:-84911358 MS.gene029377:CDS
TGACAGTGTTACAAACATTT+GGG 0.402530 1.4:-84911744 MS.gene029377:CDS
AAATGCATGGAACAATTATC+TGG 0.405311 1.4:-84911266 MS.gene029377:CDS
CATGGTGGTGGTTTCTGTGT+TGG 0.410665 1.4:-84911665 MS.gene029377:CDS
TTTGAGGTAAGAGCAGTCAT+AGG 0.413432 1.4:+84911950 None:intergenic
GATAAGAGTTGTTCAAATGA+TGG 0.417122 1.4:-84910964 MS.gene029377:CDS
TCTGTGTTGGTTCTGCAGCT+TGG 0.430002 1.4:-84911652 MS.gene029377:CDS
TGTGATGCTTTAGGAAGAAC+AGG 0.432736 1.4:-84911062 MS.gene029377:CDS
GCTATGCTATCTTCAAAAGT+TGG 0.433482 1.4:-84911608 MS.gene029377:CDS
TGGCGATTGGCATTACCATA+TGG 0.434796 1.4:-84911209 MS.gene029377:CDS
AAGAACCTTGGTGTTGTTGA+TGG 0.457967 1.4:+84911897 None:intergenic
ATAGCATAGCAAGAAATTCA+TGG 0.460707 1.4:+84911621 None:intergenic
CTACCAGCACCTTATGATGA+TGG 0.461625 1.4:-84911539 MS.gene029377:CDS
TTCAGATACTTATTGGCGAT+TGG 0.468433 1.4:-84911222 MS.gene029377:CDS
CCAAGGTTCTTCTGTTGTTG+AGG 0.469139 1.4:-84911885 MS.gene029377:CDS
TGTGAAGTGTTTAAAGGTGT+TGG 0.470256 1.4:-84911026 MS.gene029377:CDS
CCAGATTCTAAGTAAATCTC+AGG 0.474814 1.4:-84910994 MS.gene029377:CDS
CTTTAGGAAGAACAGGTACA+AGG 0.492026 1.4:-84911055 MS.gene029377:CDS
TGATCACGATCTTCACCATA+TGG 0.493029 1.4:+84911194 None:intergenic
ATCTGAGATGGATATATTGA+AGG 0.500971 1.4:-84911102 MS.gene029377:CDS
CTAATTAAAGTACACAAAGA+TGG 0.506796 1.4:-84911851 MS.gene029377:CDS
GTGACACATGGAACAATGTT+GGG 0.516249 1.4:+84911815 None:intergenic
TATATTGAAGGATAGGAACT+TGG 0.516422 1.4:-84911090 MS.gene029377:CDS
AGATGGATATATTGAAGGAT+AGG 0.521304 1.4:-84911097 MS.gene029377:CDS
GCATTTAAACCATCATCATA+AGG 0.523827 1.4:+84911530 None:intergenic
TCATCATAAGGTGCTGGTAG+AGG 0.523884 1.4:+84911542 None:intergenic
TAGCTTATAATGTTGCCAAA+AGG 0.527439 1.4:-84911388 MS.gene029377:CDS
GGATTGTGTCAAATCATTCA+TGG 0.528865 1.4:-84910943 MS.gene029377:CDS
TTCTTAGGAGGTGATAGTGC+AGG 0.529844 1.4:-84911419 MS.gene029377:CDS
AGTGACACATGGAACAATGT+TGG 0.542629 1.4:+84911814 None:intergenic
AAACCATCATCATAAGGTGC+TGG 0.546605 1.4:+84911536 None:intergenic
CCTCAACAACAGAAGAACCT+TGG 0.574186 1.4:+84911885 None:intergenic
TCAGATATACACACCAACAT+AGG 0.575792 1.4:+84911119 None:intergenic
GCTACTGATGATGCCTATGT+TGG 0.579488 1.4:-84911132 MS.gene029377:CDS
ATGAGAGTAGTGAATTTGAA+TGG 0.584788 1.4:-84911472 MS.gene029377:CDS
AACATTATCAGAGAAATGCA+TGG 0.593132 1.4:-84911279 MS.gene029377:CDS
AAAAGGATAGATTCATGTGA+AGG 0.595074 1.4:-84911371 MS.gene029377:CDS
TTCACCAATGGATTACACCA+TGG 0.598695 1.4:+84911170 None:intergenic
GTTGGTGTGTATATCTGAGA+TGG 0.604384 1.4:-84911114 MS.gene029377:CDS
TCATCCATGGTGTAATCCAT+TGG 0.611826 1.4:-84911174 MS.gene029377:CDS
CTAAACCTTATCCCACAACA+TGG 0.621453 1.4:-84911926 MS.gene029377:CDS
TAATCCATTGGTGAAAATGG+AGG 0.623717 1.4:-84911162 MS.gene029377:CDS
CCATGAAAATACACTAACAA+AGG 0.627388 1.4:+84911683 None:intergenic
GTGAAGATCGTGATCATCCA+TGG 0.631742 1.4:-84911187 MS.gene029377:CDS
CATAGATCAGAAGTGACACA+TGG 0.632301 1.4:+84911803 None:intergenic
TTTAGGAAGAACAGGTACAA+GGG 0.650756 1.4:-84911054 MS.gene029377:CDS
TTAGGAGGTGATAGTGCAGG+TGG 0.653434 1.4:-84911416 MS.gene029377:CDS
AGAGTAGTGAATTTGAATGG+TGG 0.668440 1.4:-84911469 MS.gene029377:CDS
ATGGTTTAAATGCACTAATG+TGG 0.680277 1.4:-84911520 MS.gene029377:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGACCCTTTAAATTTAA+AGG + chr1.4:84911550-84911569 None:intergenic 20.0%
!!! ATTTTGATACAACCATTTTT+TGG - chr1.4:84911568-84911587 MS.gene029377:CDS 20.0%
!!! CTTGAAGTTACATTTATTTT+TGG + chr1.4:84911106-84911125 None:intergenic 20.0%
! CTAAGGCCTTTAAATTTAAA+GGG - chr1.4:84911541-84911560 MS.gene029377:CDS 25.0%
! CTAATTAAAGTACACAAAGA+TGG - chr1.4:84911031-84911050 MS.gene029377:CDS 25.0%
!! AACTTTTCTAATGTCTTCTT+AGG - chr1.4:84911448-84911467 MS.gene029377:CDS 25.0%
!! TCTAAGGCCTTTAAATTTAA+AGG - chr1.4:84911540-84911559 MS.gene029377:CDS 25.0%
!!! AGTTTTTTTGTGTTGGAATT+TGG + chr1.4:84911178-84911197 None:intergenic 25.0%
AAAAGGATAGATTCATGTGA+AGG - chr1.4:84911511-84911530 MS.gene029377:CDS 30.0%
AAATGCATGGAACAATTATC+TGG - chr1.4:84911616-84911635 MS.gene029377:CDS 30.0%
AACATTATCAGAGAAATGCA+TGG - chr1.4:84911603-84911622 MS.gene029377:CDS 30.0%
AGATGGATATATTGAAGGAT+AGG - chr1.4:84911785-84911804 MS.gene029377:CDS 30.0%
ATAGCATAGCAAGAAATTCA+TGG + chr1.4:84911264-84911283 None:intergenic 30.0%
ATGAGAGTAGTGAATTTGAA+TGG - chr1.4:84911410-84911429 MS.gene029377:CDS 30.0%
ATGGTTTAAATGCACTAATG+TGG - chr1.4:84911362-84911381 MS.gene029377:CDS 30.0%
CCATGAAAATACACTAACAA+AGG + chr1.4:84911202-84911221 None:intergenic 30.0%
GATAAGAGTTGTTCAAATGA+TGG - chr1.4:84911918-84911937 MS.gene029377:CDS 30.0%
GCATTTAAACCATCATCATA+AGG + chr1.4:84911355-84911374 None:intergenic 30.0%
TAGCTTATAATGTTGCCAAA+AGG - chr1.4:84911494-84911513 MS.gene029377:CDS 30.0%
TATATTGAAGGATAGGAACT+TGG - chr1.4:84911792-84911811 MS.gene029377:CDS 30.0%
TCTGTTGTTGAGGAAATTAA+AGG - chr1.4:84911007-84911026 MS.gene029377:CDS 30.0%
TGACAGTGTTACAAACATTT+GGG - chr1.4:84911138-84911157 MS.gene029377:CDS 30.0%
TTGACAGTGTTACAAACATT+TGG - chr1.4:84911137-84911156 MS.gene029377:CDS 30.0%
! ATCTGAGATGGATATATTGA+AGG - chr1.4:84911780-84911799 MS.gene029377:CDS 30.0%
! CCTTTGTTAGTGTATTTTCA+TGG - chr1.4:84911199-84911218 MS.gene029377:CDS 30.0%
! CTTTCTTTTCCACCAAAAAA+TGG + chr1.4:84911583-84911602 None:intergenic 30.0%
! GTTGAATGTGAAGTGTTTAA+AGG - chr1.4:84911850-84911869 MS.gene029377:CDS 30.0%
! TTCACATGAATCTATCCTTT+TGG + chr1.4:84911512-84911531 None:intergenic 30.0%
! TTGTTAGTGTATTTTCATGG+TGG - chr1.4:84911202-84911221 MS.gene029377:CDS 30.0%
! TTTTCTAATGTCTTCTTAGG+AGG - chr1.4:84911451-84911470 MS.gene029377:CDS 30.0%
!!! CAAAGGTAGTTTTTTTGTGT+TGG + chr1.4:84911185-84911204 None:intergenic 30.0%
!!! TTGATACAACCATTTTTTGG+TGG - chr1.4:84911571-84911590 MS.gene029377:CDS 30.0%
AAAAACCATCAACAACACCA+AGG - chr1.4:84910980-84910999 MS.gene029377:CDS 35.0%
AGAGTAGTGAATTTGAATGG+TGG - chr1.4:84911413-84911432 MS.gene029377:CDS 35.0%
CCAGATTCTAAGTAAATCTC+AGG - chr1.4:84911888-84911907 MS.gene029377:CDS 35.0%
CCTGAGATTTACTTAGAATC+TGG + chr1.4:84911891-84911910 None:intergenic 35.0%
GCTATGCTATCTTCAAAAGT+TGG - chr1.4:84911274-84911293 MS.gene029377:CDS 35.0%
GGATTGTGTCAAATCATTCA+TGG - chr1.4:84911939-84911958 MS.gene029377:CDS 35.0%
GTGTAATCCATTGGTGAAAA+TGG - chr1.4:84911717-84911736 MS.gene029377:CDS 35.0%
TAATCCATTGGTGAAAATGG+AGG - chr1.4:84911720-84911739 MS.gene029377:CDS 35.0%
TAGCAGCTTCAGATACTTAT+TGG - chr1.4:84911653-84911672 MS.gene029377:CDS 35.0%
TCAGATATACACACCAACAT+AGG + chr1.4:84911766-84911785 None:intergenic 35.0%
TTCAGATACTTATTGGCGAT+TGG - chr1.4:84911660-84911679 MS.gene029377:CDS 35.0%
TTTAGGAAGAACAGGTACAA+GGG - chr1.4:84911828-84911847 MS.gene029377:CDS 35.0%
! AATTCCTCCATTTTCACCAA+TGG + chr1.4:84911727-84911746 None:intergenic 35.0%
! GATGGTTTTTACCATGTTGT+GGG + chr1.4:84910970-84910989 None:intergenic 35.0%
! TGATGGTTTTTACCATGTTG+TGG + chr1.4:84910971-84910990 None:intergenic 35.0%
! TGTGAAGTGTTTAAAGGTGT+TGG - chr1.4:84911856-84911875 MS.gene029377:CDS 35.0%
! TTAGTGTATTTTCATGGTGG+TGG - chr1.4:84911205-84911224 MS.gene029377:CDS 35.0%
! TTTTACCATGTTGTGGGATA+AGG + chr1.4:84910964-84910983 None:intergenic 35.0%
!! TTGGAGTTTTGTGATGCTTT+AGG - chr1.4:84911811-84911830 MS.gene029377:CDS 35.0%
AAACCATCATCATAAGGTGC+TGG + chr1.4:84911349-84911368 None:intergenic 40.0%
AGTGACACATGGAACAATGT+TGG + chr1.4:84911071-84911090 None:intergenic 40.0%
CATAGATCAGAAGTGACACA+TGG + chr1.4:84911082-84911101 None:intergenic 40.0%
CATGTTGTGGGATAAGGTTT+AGG + chr1.4:84910958-84910977 None:intergenic 40.0%
CTAAACCTTATCCCACAACA+TGG - chr1.4:84910956-84910975 MS.gene029377:CDS 40.0%
GTGACACATGGAACAATGTT+GGG + chr1.4:84911070-84911089 None:intergenic 40.0%
GTTGGTGTGTATATCTGAGA+TGG - chr1.4:84911768-84911787 MS.gene029377:CDS 40.0%
TCATCCATGGTGTAATCCAT+TGG - chr1.4:84911708-84911727 MS.gene029377:CDS 40.0%
TGATCACGATCTTCACCATA+TGG + chr1.4:84911691-84911710 None:intergenic 40.0%
! CATGTGAAGGTGCATTTCTA+AGG - chr1.4:84911524-84911543 MS.gene029377:CDS 40.0%
! CTTTAGGAAGAACAGGTACA+AGG - chr1.4:84911827-84911846 MS.gene029377:CDS 40.0%
! TGGGATAAGGTTTAGGTTTG+AGG + chr1.4:84910951-84910970 None:intergenic 40.0%
!! AAGAACCTTGGTGTTGTTGA+TGG + chr1.4:84910988-84911007 None:intergenic 40.0%
!! TGTGATGCTTTAGGAAGAAC+AGG - chr1.4:84911820-84911839 MS.gene029377:CDS 40.0%
!! TTCACCAATGGATTACACCA+TGG + chr1.4:84911715-84911734 None:intergenic 40.0%
CCAAGGTTCTTCTGTTGTTG+AGG - chr1.4:84910997-84911016 MS.gene029377:CDS 45.0%
CCTCAACAACAGAAGAACCT+TGG + chr1.4:84911000-84911019 None:intergenic 45.0%
CTACCAGCACCTTATGATGA+TGG - chr1.4:84911343-84911362 MS.gene029377:CDS 45.0%
GTGAAGATCGTGATCATCCA+TGG - chr1.4:84911695-84911714 MS.gene029377:CDS 45.0%
TGGCGATTGGCATTACCATA+TGG - chr1.4:84911673-84911692 MS.gene029377:CDS 45.0%
! GCTACTGATGATGCCTATGT+TGG - chr1.4:84911750-84911769 MS.gene029377:CDS 45.0%
! TTCTTAGGAGGTGATAGTGC+AGG - chr1.4:84911463-84911482 MS.gene029377:CDS 45.0%
!! TCATCATAAGGTGCTGGTAG+AGG + chr1.4:84911343-84911362 None:intergenic 45.0%
! TTAGGAGGTGATAGTGCAGG+TGG - chr1.4:84911466-84911485 MS.gene029377:CDS 50.0%
!! CATGGTGGTGGTTTCTGTGT+TGG - chr1.4:84911217-84911236 MS.gene029377:CDS 50.0%
!! TCTGTGTTGGTTCTGCAGCT+TGG - chr1.4:84911230-84911249 MS.gene029377:CDS 50.0%
!!! GGTGCTGGTAGAGGATTTTC+TGG + chr1.4:84911334-84911353 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 84910935 84911969 84910935 ID=MS.gene029377
chr1.4 mRNA 84910935 84911969 84910935 ID=MS.gene029377.t1;Parent=MS.gene029377
chr1.4 exon 84910935 84911969 84910935 ID=MS.gene029377.t1.exon1;Parent=MS.gene029377.t1
chr1.4 CDS 84910935 84911969 84910935 ID=cds.MS.gene029377.t1;Parent=MS.gene029377.t1
Gene Sequence

>MS.gene029377

ATGACTGCTCTTACCTCAAACCTAAACCTTATCCCACAACATGGTAAAAACCATCAACAACACCAAGGTTCTTCTGTTGTTGAGGAAATTAAAGGTCTAATTAAAGTACACAAAGATGGATATATAGAACGACCCAACATTGTTCCATGTGTCACTTCTGATCTATGTCCAAAAATAAATGTAACTTCAAGAGACATTATCATTGACAGTGTTACAAACATTTGGGCACGTTTCTATGTTCCAAATTCCAACACAAAAAAACTACCTTTGTTAGTGTATTTTCATGGTGGTGGTTTCTGTGTTGGTTCTGCAGCTTGGAGTTGCTACCATGAATTTCTTGCTATGCTATCTTCAAAAGTTGGTTGCTTGATAATGTCAGTTAACTATAGATTAGCACCAGAAAATCCTCTACCAGCACCTTATGATGATGGTTTAAATGCACTAATGTGGTTGAAAAAACAATTTTTATATCAAAATGAGAGTAGTGAATTTGAATGGTGGACTAAAAAATGCAACTTTTCTAATGTCTTCTTAGGAGGTGATAGTGCAGGTGGTAACATAGCTTATAATGTTGCCAAAAGGATAGATTCATGTGAAGGTGCATTTCTAAGGCCTTTAAATTTAAAGGGTCTTATTTTGATACAACCATTTTTTGGTGGAAAAGAAAGAACATTATCAGAGAAATGCATGGAACAATTATCTGGTTCTGCTTTGAATTTAGCAGCTTCAGATACTTATTGGCGATTGGCATTACCATATGGTGAAGATCGTGATCATCCATGGTGTAATCCATTGGTGAAAATGGAGGAATTGAAGCTACTGATGATGCCTATGTTGGTGTGTATATCTGAGATGGATATATTGAAGGATAGGAACTTGGAGTTTTGTGATGCTTTAGGAAGAACAGGTACAAGGGTTGAATGTGAAGTGTTTAAAGGTGTTGGACATGCTTTCCAGATTCTAAGTAAATCTCAGGTCTCTAAGATAAGAGTTGTTCAAATGATGGATTGTGTCAAATCATTCATGGCTCTTTGA
Protein sequence

>MS.gene029377.t1

MTALTSNLNLIPQHGKNHQQHQGSSVVEEIKGLIKVHKDGYIERPNIVPCVTSDLCPKINVTSRDIIIDSVTNIWARFYVPNSNTKKLPLLVYFHGGGFCVGSAAWSCYHEFLAMLSSKVGCLIMSVNYRLAPENPLPAPYDDGLNALMWLKKQFLYQNESSEFEWWTKKCNFSNVFLGGDSAGGNIAYNVAKRIDSCEGAFLRPLNLKGLILIQPFFGGKERTLSEKCMEQLSGSALNLAASDTYWRLALPYGEDRDHPWCNPLVKMEELKLLMMPMLVCISEMDILKDRNLEFCDALGRTGTRVECEVFKGVGHAFQILSKSQVSKIRVVQMMDCVKSFMAL