AlfalfaGEDB | MS.gene44055

M. sativa cultivar XinJiangDaYe / MS.gene44055

KEGG: K14493
GO: GO:0003674 GO:0003824 GO:0016787
PFAM: PF07859.16

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44055.t1	XP_024638169.1	99.4	334	2	0	1	334	1	334	2.70E-195	691

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44055.t1	Q940G6	77.9	330	72	1	4	333	15	343	1.9e-157	556.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44055.t1	G7I7F8	99.1	333	3	0	2	334	13	345	1.6e-194	688.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene44055	0.825708	4.04E-54	-1.69E-46
MS.gene049153	MS.gene44055	0.81177	5.93E-51	-1.69E-46
MS.gene049260	MS.gene44055	0.855851	4.78E-62	-1.69E-46
MS.gene049297	MS.gene44055	0.810948	8.94E-51	-1.69E-46
MS.gene049346	MS.gene44055	0.806675	7.33E-50	-1.69E-46
MS.gene049758	MS.gene44055	0.80472	1.89E-49	-1.69E-46
MS.gene050128	MS.gene44055	0.815014	1.15E-51	-1.69E-46
MS.gene050301	MS.gene44055	0.823608	1.26E-53	-1.69E-46
MS.gene050642	MS.gene44055	0.806365	8.52E-50	-1.69E-46
MS.gene051253	MS.gene44055	0.817348	3.45E-52	-1.69E-46
MS.gene051582	MS.gene44055	0.809157	2.17E-50	-1.69E-46
MS.gene051789	MS.gene44055	0.800444	1.44E-48	-1.69E-46
MS.gene051860	MS.gene44055	0.816014	6.88E-52	-1.69E-46
MS.gene052176	MS.gene44055	0.80626	8.97E-50	-1.69E-46
MS.gene052178	MS.gene44055	0.816864	4.44E-52	-1.69E-46
MS.gene053074	MS.gene44055	0.801834	7.47E-49	-1.69E-46
MS.gene053204	MS.gene44055	0.801535	8.60E-49	-1.69E-46
MS.gene053555	MS.gene44055	0.834735	2.52E-56	-1.69E-46
MS.gene053836	MS.gene44055	0.838351	3.03E-57	-1.69E-46
MS.gene053928	MS.gene44055	0.812222	4.73E-51	-1.69E-46
MS.gene054010	MS.gene44055	0.837689	4.48E-57	-1.69E-46
MS.gene054011	MS.gene44055	0.843953	1.02E-58	-1.69E-46
MS.gene054012	MS.gene44055	0.848874	4.64E-60	-1.69E-46
MS.gene054013	MS.gene44055	0.843773	1.14E-58	-1.69E-46
MS.gene054183	MS.gene44055	0.831947	1.25E-55	-1.69E-46
MS.gene054214	MS.gene44055	0.831744	1.40E-55	-1.69E-46
MS.gene054473	MS.gene44055	0.833603	4.85E-56	-1.69E-46
MS.gene054942	MS.gene44055	0.810316	1.22E-50	-1.69E-46
MS.gene054983	MS.gene44055	0.81104	8.54E-51	-1.69E-46
MS.gene055356	MS.gene44055	0.830027	3.70E-55	-1.69E-46
MS.gene055358	MS.gene44055	0.829885	4.01E-55	-1.69E-46
MS.gene055428	MS.gene44055	0.820965	5.19E-53	-1.69E-46
MS.gene055604	MS.gene44055	0.860491	1.99E-63	-1.69E-46
MS.gene056723	MS.gene44055	0.83371	4.56E-56	-1.69E-46
MS.gene056772	MS.gene44055	0.847629	1.03E-59	-1.69E-46
MS.gene056902	MS.gene44055	0.820277	7.47E-53	-1.69E-46
MS.gene05702	MS.gene44055	0.800973	1.12E-48	-1.69E-46
MS.gene057121	MS.gene44055	0.809921	1.49E-50	-1.69E-46
MS.gene057469	MS.gene44055	0.827021	1.97E-54	-1.69E-46
MS.gene057639	MS.gene44055	0.834828	2.39E-56	-1.69E-46
MS.gene057690	MS.gene44055	0.800908	1.16E-48	-1.69E-46
MS.gene057752	MS.gene44055	0.813999	1.93E-51	-1.69E-46
MS.gene058002	MS.gene44055	0.828603	8.20E-55	-1.69E-46
MS.gene05811	MS.gene44055	0.809297	2.03E-50	-1.69E-46
MS.gene058142	MS.gene44055	0.847078	1.45E-59	-1.69E-46
MS.gene058749	MS.gene44055	0.802586	5.23E-49	-1.69E-46
MS.gene059006	MS.gene44055	0.822319	2.52E-53	-1.69E-46
MS.gene059011	MS.gene44055	0.80118	1.02E-48	-1.69E-46
MS.gene059128	MS.gene44055	0.808229	3.43E-50	-1.69E-46
MS.gene059247	MS.gene44055	0.822317	2.53E-53	-1.69E-46
MS.gene05984	MS.gene44055	0.815383	9.51E-52	-1.69E-46
MS.gene061049	MS.gene44055	0.826288	2.95E-54	-1.69E-46
MS.gene061112	MS.gene44055	0.800526	1.38E-48	-1.69E-46
MS.gene061114	MS.gene44055	-0.810983	8.79E-51	-1.69E-46
MS.gene061265	MS.gene44055	0.802039	6.78E-49	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene44055	MS.gene029377	PPI
MS.gene97877	MS.gene44055	PPI
MS.gene44055	MS.gene068472	PPI
MS.gene068475	MS.gene44055	PPI
MS.gene44055	MS.gene068460	PPI
MS.gene018032	MS.gene44055	PPI
MS.gene93628	MS.gene44055	PPI
MS.gene44055	MS.gene068477	PPI
MS.gene062658	MS.gene44055	PPI
MS.gene065106	MS.gene44055	PPI
MS.gene44055	MS.gene062670	PPI
MS.gene44055	MS.gene04666	PPI
MS.gene44055	MS.gene54227	PPI
MS.gene062655	MS.gene44055	PPI
MS.gene042778	MS.gene44055	PPI
MS.gene042786	MS.gene44055	PPI
MS.gene44055	MS.gene52704	PPI
MS.gene062660	MS.gene44055	PPI
MS.gene44055	MS.gene005657	PPI
MS.gene44055	MS.gene07155	PPI
MS.gene062669	MS.gene44055	PPI
MS.gene44055	MS.gene93630	PPI
MS.gene44055	MS.gene069338	PPI
MS.gene44055	MS.gene042779	PPI
MS.gene76276	MS.gene44055	PPI
MS.gene44055	MS.gene042787	PPI
MS.gene04666	MS.gene44055	PPI
MS.gene44055	MS.gene21543	PPI
MS.gene44055	MS.gene055956	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44055.t1	MTR_1g082210	99.099	333	3	0	2	334	13	345	0.0	682
MS.gene44055.t1	MTR_1g089310	72.072	333	91	2	2	333	13	344	0.0	512
MS.gene44055.t1	MTR_1g089310	72.072	333	91	2	2	333	29	360	0.0	512
MS.gene44055.t1	MTR_7g093950	71.681	339	88	6	2	333	13	350	6.59e-179	499
MS.gene44055.t1	MTR_6g065400	40.909	330	188	2	4	330	9	334	1.66e-83	256
MS.gene44055.t1	MTR_6g065110	39.583	336	196	2	2	334	8	339	1.91e-79	246
MS.gene44055.t1	MTR_6g065120	40.836	311	176	3	24	330	30	336	5.74e-79	244
MS.gene44055.t1	MTR_6g065370	39.091	330	194	2	4	330	9	334	3.30e-77	240
MS.gene44055.t1	MTR_6g065270	35.714	336	210	2	1	330	1	336	5.25e-74	232
MS.gene44055.t1	MTR_6g065430	38.065	310	176	3	25	329	29	327	5.28e-67	214
MS.gene44055.t1	MTR_6g065340	35.045	331	189	4	6	330	19	329	8.82e-63	203
MS.gene44055.t1	MTR_4g050140	34.843	287	160	5	56	329	43	315	1.02e-46	160
MS.gene44055.t1	MTR_7g406880	32.468	308	170	8	50	330	54	350	2.27e-41	147
MS.gene44055.t1	MTR_1g111280	31.310	313	175	8	42	332	51	345	1.05e-38	140
MS.gene44055.t1	MTR_7g107040	31.142	289	167	7	56	331	45	314	8.25e-38	137
MS.gene44055.t1	MTR_3g101420	29.373	303	169	7	42	333	32	300	8.27e-37	134
MS.gene44055.t1	MTR_8g035540	29.573	328	191	9	27	334	14	321	4.91e-36	133
MS.gene44055.t1	MTR_1g102170	33.223	301	175	9	21	311	37	321	1.02e-35	132
MS.gene44055.t1	MTR_1g012430	33.212	274	158	7	27	294	16	270	2.67e-35	130
MS.gene44055.t1	MTR_7g056207	31.046	306	182	8	42	334	65	354	3.23e-35	131
MS.gene44055.t1	MTR_8g035520	30.462	325	184	9	26	331	25	326	1.80e-34	129
MS.gene44055.t1	MTR_8g035500	31.613	310	178	10	14	310	8	296	8.11e-34	127
MS.gene44055.t1	MTR_6g464120	33.884	242	134	7	21	253	23	247	1.03e-33	130
MS.gene44055.t1	MTR_6g464510	30.065	306	177	9	21	309	22	307	1.45e-33	126
MS.gene44055.t1	MTR_1g102160	32.270	282	163	7	27	294	24	291	1.51e-33	126
MS.gene44055.t1	MTR_3g012440	32.627	236	148	3	86	311	80	314	4.42e-33	125
MS.gene44055.t1	MTR_4g086510	30.132	302	182	8	42	330	33	318	5.30e-33	124
MS.gene44055.t1	MTR_0007s0520	32.883	222	127	5	42	254	38	246	3.15e-32	122
MS.gene44055.t1	MTR_6g464320	30.033	303	186	9	20	308	15	305	3.84e-31	120
MS.gene44055.t1	MTR_6g022710	31.660	259	136	4	94	312	160	417	4.11e-30	119
MS.gene44055.t1	MTR_4g086480	27.575	301	186	10	42	329	37	318	8.89e-30	116
MS.gene44055.t1	MTR_6g464280	30.769	234	143	6	26	252	23	244	1.43e-29	115
MS.gene44055.t1	MTR_3g450680	28.221	326	188	11	27	329	29	331	2.95e-29	115
MS.gene44055.t1	MTR_4g086470	29.658	263	156	8	42	294	36	279	1.01e-27	110
MS.gene44055.t1	MTR_4g086540	28.617	311	172	11	27	328	31	300	1.06e-27	110
MS.gene44055.t1	MTR_1g105020	28.956	297	169	9	27	303	21	295	5.18e-26	105
MS.gene44055.t1	MTR_5g005920	27.742	310	189	10	14	304	9	302	1.14e-25	105
MS.gene44055.t1	MTR_7g051020	31.343	268	149	8	54	304	48	297	8.85e-25	102
MS.gene44055.t1	MTR_5g005900	26.403	303	181	9	12	296	12	290	1.10e-24	102
MS.gene44055.t1	MTR_8g040860	26.230	305	190	9	43	330	43	329	1.13e-24	102
MS.gene44055.t1	MTR_5g005850	26.780	295	177	9	27	303	26	299	6.79e-24	100
MS.gene44055.t1	MTR_1g104933	31.641	256	137	8	54	294	46	278	1.35e-23	99.4
MS.gene44055.t1	MTR_1g104930	31.359	287	151	11	27	294	25	284	2.03e-23	99.0
MS.gene44055.t1	MTR_6g065470	35.461	141	72	4	22	158	37	162	1.64e-15	73.6
MS.gene44055.t1	MTR_0007s0480	37.079	89	49	1	172	253	3	91	5.23e-12	63.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44055.t1	AT5G27320	77.410	332	74	1	2	333	13	343	0.0	555
MS.gene44055.t1	AT3G05120	76.276	333	78	1	2	333	13	345	0.0	546
MS.gene44055.t1	AT3G63010	69.880	332	97	3	2	331	13	343	1.07e-177	496
MS.gene44055.t1	AT5G23530	36.499	337	187	6	2	330	10	327	2.44e-68	217
MS.gene44055.t1	AT1G68620	35.887	248	138	5	51	291	57	290	1.18e-41	148
MS.gene44055.t1	AT5G62180	33.449	287	172	7	21	297	15	292	1.34e-41	147
MS.gene44055.t1	AT5G06570	33.651	315	170	8	36	331	48	342	1.07e-40	145
MS.gene44055.t1	AT5G06570	33.651	315	170	8	36	331	48	342	1.07e-40	145
MS.gene44055.t1	AT5G06570	33.651	315	170	8	36	331	33	327	1.08e-40	145
MS.gene44055.t1	AT5G06570	33.651	315	170	8	36	331	33	327	1.08e-40	145
MS.gene44055.t1	AT5G16080	32.000	300	166	8	42	325	53	330	2.24e-37	137
MS.gene44055.t1	AT1G47480	30.420	286	174	6	22	303	16	280	3.06e-36	133
MS.gene44055.t1	AT1G19190	32.039	309	172	11	42	333	30	317	2.13e-34	128
MS.gene44055.t1	AT2G03550	31.230	317	180	10	28	330	19	311	2.32e-34	128
MS.gene44055.t1	AT2G45600	33.585	265	144	7	54	301	39	288	6.88e-34	127
MS.gene44055.t1	AT2G45610	31.757	296	172	9	21	301	16	296	9.61e-34	127
MS.gene44055.t1	AT3G48700	33.231	325	163	13	39	332	27	328	1.38e-33	126
MS.gene44055.t1	AT3G48690	32.234	273	151	7	39	294	27	282	3.17e-33	125
MS.gene44055.t1	AT5G14310	31.439	264	135	4	94	312	151	413	1.40e-32	126
MS.gene44055.t1	AT3G27320	33.080	263	131	5	94	312	134	395	1.95e-30	120
MS.gene44055.t1	AT3G27320	33.080	263	131	5	94	312	166	427	2.94e-30	120
MS.gene44055.t1	AT1G49650	30.798	263	158	7	42	294	86	334	2.68e-29	115
MS.gene44055.t1	AT1G49640	29.020	255	165	5	43	293	32	274	9.83e-27	107
MS.gene44055.t1	AT1G49660	29.502	261	161	5	42	292	30	277	1.12e-26	107

Find 91 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAGAGAAATGCTCATTATT+TGG	0.229509	1.3:-57898945	None:intergenic
CCATCAAGGCTTCGACCTTT+TGG	0.246635	1.3:-57898774	None:intergenic
TTGTCGTCTCGGTGAATTAT+AGG	0.247260	1.3:+57898394	MS.gene44055:CDS
ATGGGTGGAAAGCTGTTAAA+TGG	0.260029	1.3:+57898454	MS.gene44055:CDS
AAGAGTCTTGTGGTGGTTGC+TGG	0.278599	1.3:+57898810	MS.gene44055:CDS
TGATCTCTGTCTTCCCCTTC+AGG	0.298031	1.3:-57898729	None:intergenic
TGCTGGTTTGGATCTTGTTC+AGG	0.302371	1.3:+57898827	MS.gene44055:CDS
ATTGTATGCTAACTTGAAAT+TGG	0.306162	1.3:-57898049	None:intergenic
TCTTGTGGTGGTTGCTGGTT+TGG	0.332790	1.3:+57898815	MS.gene44055:CDS
TCCAGCTTTCTCAAGTCCTT+TGG	0.334783	1.3:-57898868	None:intergenic
TCCACAGGATTCGCATTTGC+TGG	0.346221	1.3:-57898135	None:intergenic
AGCATCGGACTCTGGGATTC+CGG	0.346427	1.3:+57898581	MS.gene44055:CDS
GCAACCACCACAAGACTCTT+AGG	0.357754	1.3:-57898807	None:intergenic
ATAGGCGTGCGCCTGAAAAT+AGG	0.363489	1.3:+57898412	MS.gene44055:CDS
CTTGTTCAGGATTGGCAATT+GGG	0.363782	1.3:+57898840	MS.gene44055:CDS
TCTTGTTCAGGATTGGCAAT+TGG	0.368427	1.3:+57898839	MS.gene44055:CDS
ATACTGCTAAACCCTTTGTT+TGG	0.396562	1.3:+57898615	MS.gene44055:CDS
GACTCTGGGATTCCGGTGTT+GGG	0.401673	1.3:+57898588	MS.gene44055:CDS
TTCTCGAGCAAGCCACGGTT+GGG	0.404625	1.3:+57898910	MS.gene44055:CDS
GGACTCTGGGATTCCGGTGT+TGG	0.405337	1.3:+57898587	MS.gene44055:CDS
GGAAGAACCTCAGCAGTAAC+AGG	0.409700	1.3:-57898270	None:intergenic
GTTTGGATCTTGTTCAGGAT+TGG	0.415765	1.3:+57898832	MS.gene44055:CDS
GAATCCGAAAAGCGTCTTGA+TGG	0.417426	1.3:+57898654	MS.gene44055:CDS
TGAAAGATAGAGACTGGTAT+TGG	0.418998	1.3:+57898694	MS.gene44055:CDS
TGTTGTTCTTCTCCCTCAAC+AGG	0.421393	1.3:-57898222	None:intergenic
CATCACGCGTGTAACCCTTT+TGG	0.421489	1.3:+57898750	MS.gene44055:CDS
CGAATCTACCGTCCTGTTGA+GGG	0.426280	1.3:+57898210	MS.gene44055:CDS
CCAAAAGGTCGAAGCCTTGA+TGG	0.429491	1.3:+57898774	MS.gene44055:CDS
TGCTAAACCCTTTGTTTGGC+GGG	0.429653	1.3:+57898619	MS.gene44055:CDS
GCATTGAAAGCATCGGACTC+TGG	0.434852	1.3:+57898573	MS.gene44055:CDS
ATCAAAACCCACATGTTCAA+TGG	0.451446	1.3:-57898024	None:intergenic
CCTGTTGTCATGTTCTTCCA+CGG	0.459630	1.3:+57898291	MS.gene44055:CDS
TATCCTTGCGCTTATGAAGA+TGG	0.468068	1.3:+57898435	MS.gene44055:CDS
TTTCTCGAGCAAGCCACGGT+TGG	0.476045	1.3:+57898909	MS.gene44055:CDS
TGGGTGGAAAGCTGTTAAAT+GGG	0.477103	1.3:+57898455	MS.gene44055:CDS
CTACATGGTTGGTGATAGCT+CGG	0.486021	1.3:+57898527	MS.gene44055:CDS
TTGTAATGCTGTTGTCGTCT+CGG	0.487442	1.3:+57898383	MS.gene44055:CDS
CTTTCTTCCCCGCCAAACAA+AGG	0.487810	1.3:-57898627	None:intergenic
CTGCTAAACCCTTTGTTTGG+CGG	0.491910	1.3:+57898618	MS.gene44055:CDS
GTAGATTCGAGTAAGGAGAT+TGG	0.497470	1.3:-57898196	None:intergenic
CATTGAAAGCATCGGACTCT+GGG	0.497517	1.3:+57898574	MS.gene44055:CDS
TGGAACTTTCAACCGTGACT+TGG	0.499887	1.3:+57898089	MS.gene44055:CDS
CCGTGGAAGAACATGACAAC+AGG	0.502089	1.3:-57898291	None:intergenic
GCCAAAGGACTTGAGAAAGC+TGG	0.509171	1.3:+57898867	MS.gene44055:CDS
TTTCTTCCCCGCCAAACAAA+GGG	0.509175	1.3:-57898626	None:intergenic
TGCCTTTCCTAAGAGTCTTG+TGG	0.514282	1.3:+57898800	MS.gene44055:CDS
AATCTTCTCCGTCGTCCTGA+TGG	0.518337	1.3:+57898069	MS.gene44055:CDS
CAAAAGGTCGAAGCCTTGAT+GGG	0.521272	1.3:+57898775	MS.gene44055:CDS
TAGATAAAATTTGATGCAGA+TGG	0.524069	1.3:+57897996	None:intergenic
TGATACATTGTGTCGTCGAT+TGG	0.529626	1.3:+57898353	MS.gene44055:CDS
AATGGGTTAACTCTAGAACT+TGG	0.530294	1.3:+57898472	MS.gene44055:CDS
TCGAATCTACCGTCCTGTTG+AGG	0.542489	1.3:+57898209	MS.gene44055:CDS
TCACGGTTGAAAGTTCCATC+AGG	0.545176	1.3:-57898084	None:intergenic
ACTTGGCAGAGTTTCTTGAT+CGG	0.546431	1.3:+57898106	MS.gene44055:CDS
ATCCTTGCGCTTATGAAGAT+GGG	0.546497	1.3:+57898436	MS.gene44055:CDS
AATCCGAAAAGCGTCTTGAT+GGG	0.557814	1.3:+57898655	MS.gene44055:CDS
TCAGAGTGAAAGATAGAGAC+TGG	0.557918	1.3:+57898688	MS.gene44055:CDS
AGCAGTATATTTCCCAACAC+CGG	0.572967	1.3:-57898600	None:intergenic
CAGGACGGTAGATTCGAGTA+AGG	0.573555	1.3:-57898203	None:intergenic
TAGGAAAGGCAACCCCATCA+AGG	0.574933	1.3:-57898788	None:intergenic
CACCCATCTTCATAAGCGCA+AGG	0.575641	1.3:-57898438	None:intergenic
AAGGTTCATATCTACATGGT+TGG	0.580511	1.3:+57898516	MS.gene44055:CDS
ATAAAATTTGATGCAGATGG+TGG	0.580628	1.3:+57897999	None:intergenic
TGAGCATTTCTCTGTTGTCA+TGG	0.580679	1.3:+57898953	MS.gene44055:CDS
CTTTCCTAAGAGTCTTGTGG+TGG	0.585467	1.3:+57898803	MS.gene44055:CDS
ATGGTTGGTGATAGCTCGGG+CGG	0.594503	1.3:+57898531	MS.gene44055:CDS
TACATGGTTGGTGATAGCTC+GGG	0.594607	1.3:+57898528	MS.gene44055:CDS
ACATTGTGTCGTCGATTGGT+TGG	0.596982	1.3:+57898357	MS.gene44055:CDS
CAGCAGTAACAGGCTTCTCA+AGG	0.598120	1.3:-57898260	None:intergenic
TGGTGGTTCCATTGAACATG+TGG	0.598890	1.3:+57898016	MS.gene44055:CDS
TGAGAAGCCTGTTACTGCTG+AGG	0.600623	1.3:+57898263	MS.gene44055:CDS
GCTATTTCTCGAGCAAGCCA+CGG	0.605537	1.3:+57898905	MS.gene44055:CDS
CCATGTTGCATTGAAAGCAT+CGG	0.608422	1.3:+57898566	MS.gene44055:CDS
GCTAAACCCTTTGTTTGGCG+GGG	0.608927	1.3:+57898620	MS.gene44055:CDS
AAAGAGAAAACACCATCCAC+AGG	0.610297	1.3:-57898150	None:intergenic
CAAGAAACTCTGCCAAGTCA+CGG	0.617005	1.3:-57898101	None:intergenic
TGAAAGTTCCATCAGGACGA+CGG	0.623383	1.3:-57898077	None:intergenic
TAGCAAGGTTCATATCTACA+TGG	0.626488	1.3:+57898512	MS.gene44055:CDS
GTTCTTCTCCCTCAACAGGA+CGG	0.631361	1.3:-57898218	None:intergenic
TGGCAATTGGGATATGCCAA+AGG	0.633591	1.3:+57898852	MS.gene44055:CDS
CTTGCGCTTATGAAGATGGG+TGG	0.634175	1.3:+57898439	MS.gene44055:CDS
TCCAGCAAATGCGAATCCTG+TGG	0.635598	1.3:+57898134	MS.gene44055:CDS
CACCACAAGACTCTTAGGAA+AGG	0.635838	1.3:-57898802	None:intergenic
CCGATGCTTTCAATGCAACA+TGG	0.638442	1.3:-57898566	None:intergenic
GGTGGTTCCATTGAACATGT+GGG	0.653078	1.3:+57898017	MS.gene44055:CDS
AAAAGGTCGAAGCCTTGATG+GGG	0.659766	1.3:+57898776	MS.gene44055:CDS
TGGTTGGTGATAGCTCGGGC+GGG	0.665839	1.3:+57898532	MS.gene44055:CDS
GTTGTCATGTTCTTCCACGG+TGG	0.676583	1.3:+57898294	MS.gene44055:CDS
GCAAATGCGAATCCTGTGGA+TGG	0.677631	1.3:+57898138	MS.gene44055:CDS
TAGCAAGTAAAACCCAACCG+TGG	0.774514	1.3:-57898922	None:intergenic
AATGTGCAAAACTTCCACCG+TGG	0.777602	1.3:-57898308	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	ATTGTATGCTAACTTGAAAT+TGG	-	chr1.3:57898052-57898071	None:intergenic	25.0%
!!	CTTTTGATGTTATTGTTGAT+CGG	+	chr1.3:57898169-57898188	MS.gene44055:CDS	25.0%
!!	TTTTGATGTTATTGTTGATC+GGG	+	chr1.3:57898170-57898189	MS.gene44055:CDS	25.0%
	ACAGAGAAATGCTCATTATT+TGG	-	chr1.3:57898948-57898967	None:intergenic	30.0%
	AAGGTTCATATCTACATGGT+TGG	+	chr1.3:57898516-57898535	MS.gene44055:CDS	35.0%
	ATACTGCTAAACCCTTTGTT+TGG	+	chr1.3:57898615-57898634	MS.gene44055:CDS	35.0%
	ATCAAAACCCACATGTTCAA+TGG	-	chr1.3:57898027-57898046	None:intergenic	35.0%
	GCAGAGTAAAAAAGATAGCA+AGG	+	chr1.3:57898497-57898516	MS.gene44055:CDS	35.0%
	TAGCAAGGTTCATATCTACA+TGG	+	chr1.3:57898512-57898531	MS.gene44055:CDS	35.0%
	TGAAAGATAGAGACTGGTAT+TGG	+	chr1.3:57898694-57898713	MS.gene44055:CDS	35.0%
!	TGGAAGTTTTGCACATTCTT+CGG	+	chr1.3:57898314-57898333	MS.gene44055:CDS	35.0%
!!	AATGGGTTAACTCTAGAACT+TGG	+	chr1.3:57898472-57898491	MS.gene44055:CDS	35.0%
	AAAGAGAAAACACCATCCAC+AGG	-	chr1.3:57898153-57898172	None:intergenic	40.0%
	ACTTGGCAGAGTTTCTTGAT+CGG	+	chr1.3:57898106-57898125	MS.gene44055:CDS	40.0%
	AGCAGTATATTTCCCAACAC+CGG	-	chr1.3:57898603-57898622	None:intergenic	40.0%
	ATCCTTGCGCTTATGAAGAT+GGG	+	chr1.3:57898436-57898455	MS.gene44055:CDS	40.0%
	ATGGGTGGAAAGCTGTTAAA+TGG	+	chr1.3:57898454-57898473	MS.gene44055:CDS	40.0%
	GTAGATTCGAGTAAGGAGAT+TGG	-	chr1.3:57898199-57898218	None:intergenic	40.0%
	GTTTGGATCTTGTTCAGGAT+TGG	+	chr1.3:57898832-57898851	MS.gene44055:CDS	40.0%
	TATCCTTGCGCTTATGAAGA+TGG	+	chr1.3:57898435-57898454	MS.gene44055:CDS	40.0%
	TCAGAGTGAAAGATAGAGAC+TGG	+	chr1.3:57898688-57898707	MS.gene44055:CDS	40.0%
	TGAGCATTTCTCTGTTGTCA+TGG	+	chr1.3:57898953-57898972	MS.gene44055:CDS	40.0%
	TGATACATTGTGTCGTCGAT+TGG	+	chr1.3:57898353-57898372	MS.gene44055:CDS	40.0%
	TGGGTGGAAAGCTGTTAAAT+GGG	+	chr1.3:57898455-57898474	MS.gene44055:CDS	40.0%
	TTGTAATGCTGTTGTCGTCT+CGG	+	chr1.3:57898383-57898402	MS.gene44055:CDS	40.0%
	TTGTCGTCTCGGTGAATTAT+AGG	+	chr1.3:57898394-57898413	MS.gene44055:CDS	40.0%
!	CCATGTTGCATTGAAAGCAT+CGG	+	chr1.3:57898566-57898585	MS.gene44055:CDS	40.0%
!	CTTGTTCAGGATTGGCAATT+GGG	+	chr1.3:57898840-57898859	MS.gene44055:CDS	40.0%
!	TCTTGTTCAGGATTGGCAAT+TGG	+	chr1.3:57898839-57898858	MS.gene44055:CDS	40.0%
!	TGTAACCCTTTTGGTCCAAA+AGG	+	chr1.3:57898759-57898778	MS.gene44055:CDS	40.0%
!	TTCGACCTTTTGGACCAAAA+GGG	-	chr1.3:57898767-57898786	None:intergenic	40.0%
!!	AATCCGAAAAGCGTCTTGAT+GGG	+	chr1.3:57898655-57898674	MS.gene44055:CDS	40.0%
	AAAAGGTCGAAGCCTTGATG+GGG	+	chr1.3:57898776-57898795	MS.gene44055:CDS	45.0%
	AATGTGCAAAACTTCCACCG+TGG	-	chr1.3:57898311-57898330	None:intergenic	45.0%
	CAAAAGGTCGAAGCCTTGAT+GGG	+	chr1.3:57898775-57898794	MS.gene44055:CDS	45.0%
	CAAGAAACTCTGCCAAGTCA+CGG	-	chr1.3:57898104-57898123	None:intergenic	45.0%
	CACCACAAGACTCTTAGGAA+AGG	-	chr1.3:57898805-57898824	None:intergenic	45.0%
	CCGATGCTTTCAATGCAACA+TGG	-	chr1.3:57898569-57898588	None:intergenic	45.0%
	CCTGTTGTCATGTTCTTCCA+CGG	+	chr1.3:57898291-57898310	MS.gene44055:CDS	45.0%
	GGTGGTTCCATTGAACATGT+GGG	+	chr1.3:57898017-57898036	MS.gene44055:CDS	45.0%
	TAGCAAGTAAAACCCAACCG+TGG	-	chr1.3:57898925-57898944	None:intergenic	45.0%
	TCACGGTTGAAAGTTCCATC+AGG	-	chr1.3:57898087-57898106	None:intergenic	45.0%
	TCCAGCTTTCTCAAGTCCTT+TGG	-	chr1.3:57898871-57898890	None:intergenic	45.0%
	TGAAAGTTCCATCAGGACGA+CGG	-	chr1.3:57898080-57898099	None:intergenic	45.0%
	TGCCTTTCCTAAGAGTCTTG+TGG	+	chr1.3:57898800-57898819	MS.gene44055:CDS	45.0%
	TGGAACTTTCAACCGTGACT+TGG	+	chr1.3:57898089-57898108	MS.gene44055:CDS	45.0%
	TGGCAATTGGGATATGCCAA+AGG	+	chr1.3:57898852-57898871	MS.gene44055:CDS	45.0%
	TGGTGGTTCCATTGAACATG+TGG	+	chr1.3:57898016-57898035	MS.gene44055:CDS	45.0%
	TGTTGTTCTTCTCCCTCAAC+AGG	-	chr1.3:57898225-57898244	None:intergenic	45.0%
	TTTCTTCCCCGCCAAACAAA+GGG	-	chr1.3:57898629-57898648	None:intergenic	45.0%
!	ACATTGTGTCGTCGATTGGT+TGG	+	chr1.3:57898357-57898376	MS.gene44055:CDS	45.0%
!	CTGCTAAACCCTTTGTTTGG+CGG	+	chr1.3:57898618-57898637	MS.gene44055:CDS	45.0%
!	CTTCGACCTTTTGGACCAAA+AGG	-	chr1.3:57898768-57898787	None:intergenic	45.0%
!	CTTTCCTAAGAGTCTTGTGG+TGG	+	chr1.3:57898803-57898822	MS.gene44055:CDS	45.0%
!	GAGAGCTTTTCTTCCTGAAG+GGG	+	chr1.3:57898716-57898735	MS.gene44055:CDS	45.0%
!	GCGCAAGGATACCTATTTTC+AGG	-	chr1.3:57898426-57898445	None:intergenic	45.0%
!	GGAGAGCTTTTCTTCCTGAA+GGG	+	chr1.3:57898715-57898734	MS.gene44055:CDS	45.0%
!	TCTCCCATCAAGACGCTTTT+CGG	-	chr1.3:57898661-57898680	None:intergenic	45.0%
!	TGCTAAACCCTTTGTTTGGC+GGG	+	chr1.3:57898619-57898638	MS.gene44055:CDS	45.0%
!	TGGAGAGCTTTTCTTCCTGA+AGG	+	chr1.3:57898714-57898733	MS.gene44055:CDS	45.0%
!!	CATTGAAAGCATCGGACTCT+GGG	+	chr1.3:57898574-57898593	MS.gene44055:CDS	45.0%
!!	CTACATGGTTGGTGATAGCT+CGG	+	chr1.3:57898527-57898546	MS.gene44055:CDS	45.0%
!!	GAATCCGAAAAGCGTCTTGA+TGG	+	chr1.3:57898654-57898673	MS.gene44055:CDS	45.0%
!!	TACATGGTTGGTGATAGCTC+GGG	+	chr1.3:57898528-57898547	MS.gene44055:CDS	45.0%
!!	TGCTGGTTTGGATCTTGTTC+AGG	+	chr1.3:57898827-57898846	MS.gene44055:CDS	45.0%
	AATCTTCTCCGTCGTCCTGA+TGG	+	chr1.3:57898069-57898088	MS.gene44055:CDS	50.0%
	ATAGGCGTGCGCCTGAAAAT+AGG	+	chr1.3:57898412-57898431	MS.gene44055:CDS	50.0%
	CACCCATCTTCATAAGCGCA+AGG	-	chr1.3:57898441-57898460	None:intergenic	50.0%
	CAGCAGTAACAGGCTTCTCA+AGG	-	chr1.3:57898263-57898282	None:intergenic	50.0%
	CAGGACGGTAGATTCGAGTA+AGG	-	chr1.3:57898206-57898225	None:intergenic	50.0%
	CCAAAAGGTCGAAGCCTTGA+TGG	+	chr1.3:57898774-57898793	MS.gene44055:CDS	50.0%
	CCGTGGAAGAACATGACAAC+AGG	-	chr1.3:57898294-57898313	None:intergenic	50.0%
	CGAATCTACCGTCCTGTTGA+GGG	+	chr1.3:57898210-57898229	MS.gene44055:CDS	50.0%
	CTTGCGCTTATGAAGATGGG+TGG	+	chr1.3:57898439-57898458	MS.gene44055:CDS	50.0%
	CTTTCTTCCCCGCCAAACAA+AGG	-	chr1.3:57898630-57898649	None:intergenic	50.0%
	GCAAATGCGAATCCTGTGGA+TGG	+	chr1.3:57898138-57898157	MS.gene44055:CDS	50.0%
	GCAACCACCACAAGACTCTT+AGG	-	chr1.3:57898810-57898829	None:intergenic	50.0%
	GCCAAAGGACTTGAGAAAGC+TGG	+	chr1.3:57898867-57898886	MS.gene44055:CDS	50.0%
	GGAAGAACCTCAGCAGTAAC+AGG	-	chr1.3:57898273-57898292	None:intergenic	50.0%
	GTTCTTCTCCCTCAACAGGA+CGG	-	chr1.3:57898221-57898240	None:intergenic	50.0%
	GTTGTCATGTTCTTCCACGG+TGG	+	chr1.3:57898294-57898313	MS.gene44055:CDS	50.0%
	TAGGAAAGGCAACCCCATCA+AGG	-	chr1.3:57898791-57898810	None:intergenic	50.0%
	TCCACAGGATTCGCATTTGC+TGG	-	chr1.3:57898138-57898157	None:intergenic	50.0%
	TCCAGCAAATGCGAATCCTG+TGG	+	chr1.3:57898134-57898153	MS.gene44055:CDS	50.0%
	TCGAATCTACCGTCCTGTTG+AGG	+	chr1.3:57898209-57898228	MS.gene44055:CDS	50.0%
	TGAGAAGCCTGTTACTGCTG+AGG	+	chr1.3:57898263-57898282	MS.gene44055:CDS	50.0%
	TGATCTCTGTCTTCCCCTTC+AGG	-	chr1.3:57898732-57898751	None:intergenic	50.0%
!	AAGAGTCTTGTGGTGGTTGC+TGG	+	chr1.3:57898810-57898829	MS.gene44055:CDS	50.0%
!	CATCACGCGTGTAACCCTTT+TGG	+	chr1.3:57898750-57898769	MS.gene44055:CDS	50.0%
!	CCATCAAGGCTTCGACCTTT+TGG	-	chr1.3:57898777-57898796	None:intergenic	50.0%
!	GCTAAACCCTTTGTTTGGCG+GGG	+	chr1.3:57898620-57898639	MS.gene44055:CDS	50.0%
!	TCTTGTGGTGGTTGCTGGTT+TGG	+	chr1.3:57898815-57898834	MS.gene44055:CDS	50.0%
!!	GCATTGAAAGCATCGGACTC+TGG	+	chr1.3:57898573-57898592	MS.gene44055:CDS	50.0%
!!	GCTATTTCTCGAGCAAGCCA+CGG	+	chr1.3:57898905-57898924	MS.gene44055:CDS	50.0%
	TTCTCGAGCAAGCCACGGTT+GGG	+	chr1.3:57898910-57898929	MS.gene44055:CDS	55.0%
	TTTCTCGAGCAAGCCACGGT+TGG	+	chr1.3:57898909-57898928	MS.gene44055:CDS	55.0%
!!	AGCATCGGACTCTGGGATTC+CGG	+	chr1.3:57898581-57898600	MS.gene44055:CDS	55.0%
!!	ATGGTTGGTGATAGCTCGGG+CGG	+	chr1.3:57898531-57898550	MS.gene44055:CDS	55.0%
!!	GACTCTGGGATTCCGGTGTT+GGG	+	chr1.3:57898588-57898607	MS.gene44055:CDS	55.0%
!!	GGACTCTGGGATTCCGGTGT+TGG	+	chr1.3:57898587-57898606	MS.gene44055:CDS	60.0%
!!	TGGTTGGTGATAGCTCGGGC+GGG	+	chr1.3:57898532-57898551	MS.gene44055:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	57898009	57899013	57898009	ID=MS.gene44055
chr1.3	mRNA	57898009	57899013	57898009	ID=MS.gene44055.t1;Parent=MS.gene44055
chr1.3	exon	57898009	57899013	57898009	ID=MS.gene44055.t1.exon1;Parent=MS.gene44055.t1
chr1.3	CDS	57898009	57899013	57898009	ID=cds.MS.gene44055.t1;Parent=MS.gene44055.t1

Gene Sequence

>MS.gene44055

ATGCAGATGGTGGTTCCATTGAACATGTGGGTTTTGATCTCCAATTTCAAGTTAGCATACAATCTTCTCCGTCGTCCTGATGGAACTTTCAACCGTGACTTGGCAGAGTTTCTTGATCGGAAAGTTCCAGCAAATGCGAATCCTGTGGATGGTGTTTTCTCTTTTGATGTTATTGTTGATCGGGAAACCAATCTCCTTACTCGAATCTACCGTCCTGTTGAGGGAGAAGAACAACATGTGAACATTGTTGACCTTGAGAAGCCTGTTACTGCTGAGGTTCTTCCTGTTGTCATGTTCTTCCACGGTGGAAGTTTTGCACATTCTTCGGCTAACAGTGCTATTTATGATACATTGTGTCGTCGATTGGTTGGTATTTGTAATGCTGTTGTCGTCTCGGTGAATTATAGGCGTGCGCCTGAAAATAGGTATCCTTGCGCTTATGAAGATGGGTGGAAAGCTGTTAAATGGGTTAACTCTAGAACTTGGCTGCAGAGTAAAAAAGATAGCAAGGTTCATATCTACATGGTTGGTGATAGCTCGGGCGGGAACATTGTGCACCATGTTGCATTGAAAGCATCGGACTCTGGGATTCCGGTGTTGGGAAATATACTGCTAAACCCTTTGTTTGGCGGGGAAGAAAGAACAGAATCCGAAAAGCGTCTTGATGGGAGATATTTTGTCAGAGTGAAAGATAGAGACTGGTATTGGAGAGCTTTTCTTCCTGAAGGGGAAGACAGAGATCATCACGCGTGTAACCCTTTTGGTCCAAAAGGTCGAAGCCTTGATGGGGTTGCCTTTCCTAAGAGTCTTGTGGTGGTTGCTGGTTTGGATCTTGTTCAGGATTGGCAATTGGGATATGCCAAAGGACTTGAGAAAGCTGGACAAAATGTGAAGTTGCTATTTCTCGAGCAAGCCACGGTTGGGTTTTACTTGCTACCAAATAATGAGCATTTCTCTGTTGTCATGGATGAGATAAAACATTTTGTCAACTCTGACTGTTCATAG

Protein sequence

>MS.gene44055.t1

MQMVVPLNMWVLISNFKLAYNLLRRPDGTFNRDLAEFLDRKVPANANPVDGVFSFDVIVDRETNLLTRIYRPVEGEEQHVNIVDLEKPVTAEVLPVVMFFHGGSFAHSSANSAIYDTLCRRLVGICNAVVVSVNYRRAPENRYPCAYEDGWKAVKWVNSRTWLQSKKDSKVHIYMVGDSSGGNIVHHVALKASDSGIPVLGNILLNPLFGGEERTESEKRLDGRYFVRVKDRDWYWRAFLPEGEDRDHHACNPFGPKGRSLDGVAFPKSLVVVAGLDLVQDWQLGYAKGLEKAGQNVKLLFLEQATVGFYLLPNNEHFSVVMDEIKHFVNSDCS