AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005188

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005188.t1 MTR_1g082210 99.099 333 3 0 2 334 13 345 0.0 682
MS.gene005188.t1 MTR_1g089310 72.072 333 91 2 2 333 29 360 0.0 511
MS.gene005188.t1 MTR_1g089310 72.072 333 91 2 2 333 13 344 0.0 510
MS.gene005188.t1 MTR_7g093950 71.681 339 88 6 2 333 13 350 1.27e-178 498
MS.gene005188.t1 MTR_6g065400 40.909 330 188 2 4 330 9 334 1.43e-83 256
MS.gene005188.t1 MTR_6g065110 39.583 336 196 2 2 334 8 339 1.51e-79 246
MS.gene005188.t1 MTR_6g065120 40.836 311 176 3 24 330 30 336 4.88e-79 245
MS.gene005188.t1 MTR_6g065370 39.091 330 194 2 4 330 9 334 3.80e-77 240
MS.gene005188.t1 MTR_6g065270 35.714 336 210 2 1 330 1 336 3.88e-74 232
MS.gene005188.t1 MTR_6g065430 38.065 310 176 4 25 329 29 327 4.70e-66 211
MS.gene005188.t1 MTR_6g065340 35.045 331 189 4 6 330 19 329 9.40e-63 203
MS.gene005188.t1 MTR_4g050140 35.417 288 157 6 56 329 43 315 2.59e-46 159
MS.gene005188.t1 MTR_7g406880 32.792 308 169 7 50 330 54 350 5.80e-43 152
MS.gene005188.t1 MTR_1g111280 31.629 313 174 8 42 332 51 345 3.08e-39 142
MS.gene005188.t1 MTR_7g107040 30.690 290 167 7 56 331 45 314 3.21e-37 136
MS.gene005188.t1 MTR_3g101420 29.703 303 168 7 42 333 32 300 3.47e-37 135
MS.gene005188.t1 MTR_8g035540 29.878 328 190 9 27 334 14 321 6.92e-37 135
MS.gene005188.t1 MTR_1g102170 33.555 301 174 9 21 311 37 321 2.74e-36 134
MS.gene005188.t1 MTR_1g012430 32.117 274 161 6 27 294 16 270 7.16e-36 132
MS.gene005188.t1 MTR_7g056207 31.373 306 181 8 42 334 65 354 2.03e-35 132
MS.gene005188.t1 MTR_8g035520 30.769 325 183 9 26 331 25 326 2.71e-35 131
MS.gene005188.t1 MTR_1g102160 32.979 282 161 8 27 294 24 291 4.48e-34 127
MS.gene005188.t1 MTR_6g464510 30.065 306 177 9 21 309 22 307 6.24e-34 127
MS.gene005188.t1 MTR_6g464120 34.298 242 133 7 21 253 23 247 7.64e-34 130
MS.gene005188.t1 MTR_8g035500 31.613 310 178 10 14 310 8 296 2.68e-33 125
MS.gene005188.t1 MTR_4g086510 30.464 302 181 8 42 330 33 318 3.61e-33 125
MS.gene005188.t1 MTR_3g012440 32.627 236 148 3 86 311 80 314 1.33e-32 124
MS.gene005188.t1 MTR_6g464320 30.363 303 185 9 20 308 15 305 4.95e-32 122
MS.gene005188.t1 MTR_0007s0520 32.883 222 127 5 42 254 38 246 1.11e-31 121
MS.gene005188.t1 MTR_6g022710 31.660 259 136 4 94 312 160 417 2.00e-30 120
MS.gene005188.t1 MTR_4g086480 28.477 302 182 11 42 329 37 318 4.16e-30 117
MS.gene005188.t1 MTR_6g464280 30.769 234 143 6 26 252 23 244 6.28e-30 116
MS.gene005188.t1 MTR_3g450680 28.221 326 188 11 27 329 29 331 8.28e-29 114
MS.gene005188.t1 MTR_4g086470 30.682 264 152 9 42 294 36 279 5.62e-28 111
MS.gene005188.t1 MTR_4g086540 28.939 311 171 11 27 328 31 300 6.02e-28 111
MS.gene005188.t1 MTR_1g105020 29.630 297 167 9 27 303 21 295 6.82e-27 108
MS.gene005188.t1 MTR_5g005920 28.387 310 187 10 14 304 9 302 9.22e-27 108
MS.gene005188.t1 MTR_5g005900 26.403 303 181 9 12 296 12 290 2.55e-25 104
MS.gene005188.t1 MTR_7g051020 31.716 268 148 8 54 304 48 297 6.61e-25 103
MS.gene005188.t1 MTR_1g104930 32.056 287 149 11 27 294 25 284 2.58e-24 101
MS.gene005188.t1 MTR_8g040860 26.230 305 190 9 43 330 43 329 2.85e-24 101
MS.gene005188.t1 MTR_5g005850 27.119 295 176 9 27 303 26 299 5.56e-24 100
MS.gene005188.t1 MTR_1g104933 32.031 256 136 8 54 294 46 278 1.39e-23 99.4
MS.gene005188.t1 MTR_6g065470 35.461 141 72 4 22 158 37 162 1.60e-15 73.6
MS.gene005188.t1 MTR_0007s0480 37.079 89 49 1 172 253 3 91 1.43e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005188.t1 AT5G27320 77.410 332 74 1 2 333 13 343 0.0 555
MS.gene005188.t1 AT3G05120 76.276 333 78 1 2 333 13 345 0.0 546
MS.gene005188.t1 AT3G63010 69.578 332 98 3 2 331 13 343 1.20e-176 494
MS.gene005188.t1 AT5G23530 36.202 337 188 6 2 330 10 327 1.77e-67 215
MS.gene005188.t1 AT5G62180 33.449 287 172 7 21 297 15 292 6.70e-42 148
MS.gene005188.t1 AT1G68620 36.290 248 137 5 51 291 57 290 7.82e-42 148
MS.gene005188.t1 AT5G06570 33.651 315 170 8 36 331 48 342 3.43e-40 144
MS.gene005188.t1 AT5G06570 33.651 315 170 8 36 331 48 342 3.43e-40 144
MS.gene005188.t1 AT5G06570 33.651 315 170 8 36 331 33 327 3.44e-40 144
MS.gene005188.t1 AT5G06570 33.651 315 170 8 36 331 33 327 3.44e-40 144
MS.gene005188.t1 AT5G16080 31.667 300 167 8 42 325 53 330 2.59e-37 137
MS.gene005188.t1 AT1G47480 30.420 286 174 6 22 303 16 280 6.91e-36 132
MS.gene005188.t1 AT2G45610 32.095 296 171 9 21 301 16 296 1.47e-34 129
MS.gene005188.t1 AT2G45600 33.585 265 144 7 54 301 39 288 3.69e-34 128
MS.gene005188.t1 AT2G03550 31.230 317 180 10 28 330 19 311 4.32e-34 127
MS.gene005188.t1 AT1G19190 32.039 309 172 11 42 333 30 317 6.69e-34 127
MS.gene005188.t1 AT3G48700 33.231 325 163 13 39 332 27 328 2.49e-33 125
MS.gene005188.t1 AT5G14310 31.439 264 135 4 94 312 151 413 6.42e-33 127
MS.gene005188.t1 AT3G48690 32.234 273 151 7 39 294 27 282 6.74e-33 124
MS.gene005188.t1 AT3G27320 33.080 263 131 5 94 312 134 395 4.30e-31 122
MS.gene005188.t1 AT3G27320 33.080 263 131 5 94 312 166 427 7.58e-31 121
MS.gene005188.t1 AT1G49650 30.798 263 158 7 42 294 86 334 8.58e-29 114
MS.gene005188.t1 AT1G49660 30.038 263 157 6 42 292 30 277 2.40e-26 107
MS.gene005188.t1 AT1G49640 29.020 255 165 5 43 293 32 274 2.56e-26 106

Find 91 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAGAGAAATGCTCATTATT+TGG 0.229509 1.4:-66488642 None:intergenic
CCATCAAGGCTTCGACCTTT+TGG 0.246635 1.4:-66488471 None:intergenic
TTGTCGTCTCGGTGAATTAT+AGG 0.247260 1.4:+66488091 MS.gene005188:CDS
ATGGGTGGAAAGCTGTTAAA+TGG 0.260029 1.4:+66488151 MS.gene005188:CDS
AAGAGTCTTGTGGTGGTTGC+TGG 0.278599 1.4:+66488507 MS.gene005188:CDS
TGATCTCTGTCTTCCCCTTC+AGG 0.298031 1.4:-66488426 None:intergenic
TGCTGGTTTGGATCTTGTTC+AGG 0.302371 1.4:+66488524 MS.gene005188:CDS
ATTGTATGCTAACTTGAAAT+TGG 0.306162 1.4:-66487746 None:intergenic
TCTTGTGGTGGTTGCTGGTT+TGG 0.332790 1.4:+66488512 MS.gene005188:CDS
TCCAGCTTTCTCAAGTCCTT+TGG 0.334783 1.4:-66488565 None:intergenic
TCCACAGGATTCGCATTTGC+TGG 0.346221 1.4:-66487832 None:intergenic
AGCATTGGACTCTGGGATTC+CGG 0.350883 1.4:+66488278 MS.gene005188:CDS
GCAACCACCACAAGACTCTT+AGG 0.357754 1.4:-66488504 None:intergenic
ATAGGCGTGCGCCTGAAAAT+AGG 0.363489 1.4:+66488109 MS.gene005188:CDS
CTTGTTCAGGATTGGCAATT+GGG 0.363782 1.4:+66488537 MS.gene005188:CDS
TCTTGTTCAGGATTGGCAAT+TGG 0.368427 1.4:+66488536 MS.gene005188:CDS
GACTCTGGGATTCCGGTGTT+GGG 0.383791 1.4:+66488285 MS.gene005188:CDS
CATTGAAAGCATTGGACTCT+GGG 0.392347 1.4:+66488271 MS.gene005188:CDS
GGACTCTGGGATTCCGGTGT+TGG 0.395996 1.4:+66488284 MS.gene005188:CDS
ATACTGCTAAACCCTTTGTT+TGG 0.396562 1.4:+66488312 MS.gene005188:CDS
TTCTCGAGCAAGCCACGGTT+GGG 0.404625 1.4:+66488607 MS.gene005188:CDS
GGAAGAACCTCAGCAGTAAC+AGG 0.409700 1.4:-66487967 None:intergenic
GTTTGGATCTTGTTCAGGAT+TGG 0.415765 1.4:+66488529 MS.gene005188:CDS
GAATCCGAAAAGCGTCTTGA+TGG 0.417426 1.4:+66488351 MS.gene005188:CDS
TGAAAGATAGAGACTGGTAT+TGG 0.418998 1.4:+66488391 MS.gene005188:CDS
TGTTGTTCTTCTCCCTCAAC+AGG 0.421393 1.4:-66487919 None:intergenic
CATCACGCGTGTAACCCTTT+TGG 0.421489 1.4:+66488447 MS.gene005188:CDS
CCAAAAGGTCGAAGCCTTGA+TGG 0.429491 1.4:+66488471 MS.gene005188:CDS
TGCTAAACCCTTTGTTTGGC+GGG 0.429653 1.4:+66488316 MS.gene005188:CDS
ATCAAAACCCACATGTTCAA+TGG 0.451446 1.4:-66487721 None:intergenic
CGAATCTACCGTCCTGTTGA+GGG 0.455724 1.4:+66487907 MS.gene005188:CDS
CCTGTTGTCATGTTCTTCCA+CGG 0.459630 1.4:+66487988 MS.gene005188:CDS
TATCCTTGCGCTTATGAAGA+TGG 0.468068 1.4:+66488132 MS.gene005188:CDS
GCATTGAAAGCATTGGACTC+TGG 0.474324 1.4:+66488270 MS.gene005188:CDS
TTTCTCGAGCAAGCCACGGT+TGG 0.476045 1.4:+66488606 MS.gene005188:CDS
TGGGTGGAAAGCTGTTAAAT+GGG 0.477103 1.4:+66488152 MS.gene005188:CDS
CTACATGGTTGGTGATAGCT+CGG 0.486021 1.4:+66488224 MS.gene005188:CDS
TTGTAATGCTGTTGTCGTCT+CGG 0.487442 1.4:+66488080 MS.gene005188:CDS
GTAGATTCGAGCAAGGAGAT+TGG 0.487775 1.4:-66487893 None:intergenic
CTTTCTTCCCCGCCAAACAA+AGG 0.487810 1.4:-66488324 None:intergenic
CTGCTAAACCCTTTGTTTGG+CGG 0.491910 1.4:+66488315 MS.gene005188:CDS
TGGAACTTTCAACCGTGACT+TGG 0.499887 1.4:+66487786 MS.gene005188:CDS
CCGTGGAAGAACATGACAAC+AGG 0.502089 1.4:-66487988 None:intergenic
GCCAAAGGACTTGAGAAAGC+TGG 0.509171 1.4:+66488564 MS.gene005188:CDS
TTTCTTCCCCGCCAAACAAA+GGG 0.509175 1.4:-66488323 None:intergenic
TGCCTTTCCTAAGAGTCTTG+TGG 0.514282 1.4:+66488497 MS.gene005188:CDS
AATCTTCTCCGTCGTCCTGA+TGG 0.518337 1.4:+66487766 MS.gene005188:CDS
TCGAATCTACCGTCCTGTTG+AGG 0.518981 1.4:+66487906 MS.gene005188:CDS
CAAAAGGTCGAAGCCTTGAT+GGG 0.521272 1.4:+66488472 MS.gene005188:CDS
TAGATAAAATTTGATGCAGA+TGG 0.524069 1.4:+66487693 None:intergenic
TGATACATTGTGTCGTCGAT+TGG 0.529626 1.4:+66488050 MS.gene005188:CDS
CCATGTTGCATTGAAAGCAT+TGG 0.529699 1.4:+66488263 MS.gene005188:CDS
AATGGGTTAACTCTAGAACT+TGG 0.530294 1.4:+66488169 MS.gene005188:CDS
TCACGGTTGAAAGTTCCATC+AGG 0.545176 1.4:-66487781 None:intergenic
ACTTGGCAGAGTTTCTTGAT+CGG 0.546431 1.4:+66487803 MS.gene005188:CDS
ATCCTTGCGCTTATGAAGAT+GGG 0.546497 1.4:+66488133 MS.gene005188:CDS
AATCCGAAAAGCGTCTTGAT+GGG 0.557814 1.4:+66488352 MS.gene005188:CDS
TCAGAGTGAAAGATAGAGAC+TGG 0.557918 1.4:+66488385 MS.gene005188:CDS
AGCAGTATATTTCCCAACAC+CGG 0.572967 1.4:-66488297 None:intergenic
TAGGAAAGGCAACCCCATCA+AGG 0.574933 1.4:-66488485 None:intergenic
CACCCATCTTCATAAGCGCA+AGG 0.575641 1.4:-66488135 None:intergenic
AAGGTTCATATCTACATGGT+TGG 0.580511 1.4:+66488213 MS.gene005188:CDS
ATAAAATTTGATGCAGATGG+TGG 0.580628 1.4:+66487696 None:intergenic
TGAGCATTTCTCTGTTGTCA+TGG 0.580679 1.4:+66488650 MS.gene005188:CDS
CTTTCCTAAGAGTCTTGTGG+TGG 0.585467 1.4:+66488500 MS.gene005188:CDS
ATGGTTGGTGATAGCTCGGG+CGG 0.594503 1.4:+66488228 MS.gene005188:CDS
TACATGGTTGGTGATAGCTC+GGG 0.594607 1.4:+66488225 MS.gene005188:CDS
ACATTGTGTCGTCGATTGGT+TGG 0.596982 1.4:+66488054 MS.gene005188:CDS
CAGCAGTAACAGGCTTCTCA+AGG 0.598120 1.4:-66487957 None:intergenic
TGGTGGTTCCATTGAACATG+TGG 0.598890 1.4:+66487713 MS.gene005188:CDS
TGAGAAGCCTGTTACTGCTG+AGG 0.600623 1.4:+66487960 MS.gene005188:CDS
GCTATTTCTCGAGCAAGCCA+CGG 0.605537 1.4:+66488602 MS.gene005188:CDS
GCTAAACCCTTTGTTTGGCG+GGG 0.608927 1.4:+66488317 MS.gene005188:CDS
AAAGAGAAAACACCATCCAC+AGG 0.610297 1.4:-66487847 None:intergenic
CAAGAAACTCTGCCAAGTCA+CGG 0.617005 1.4:-66487798 None:intergenic
TGAAAGTTCCATCAGGACGA+CGG 0.623383 1.4:-66487774 None:intergenic
TAGCAAGGTTCATATCTACA+TGG 0.626488 1.4:+66488209 MS.gene005188:CDS
GTTCTTCTCCCTCAACAGGA+CGG 0.631361 1.4:-66487915 None:intergenic
TGGCAATTGGGATATGCCAA+AGG 0.633591 1.4:+66488549 MS.gene005188:CDS
CTTGCGCTTATGAAGATGGG+TGG 0.634175 1.4:+66488136 MS.gene005188:CDS
TCCAGCAAATGCGAATCCTG+TGG 0.635598 1.4:+66487831 MS.gene005188:CDS
CACCACAAGACTCTTAGGAA+AGG 0.635838 1.4:-66488499 None:intergenic
CCAATGCTTTCAATGCAACA+TGG 0.638442 1.4:-66488263 None:intergenic
GGTGGTTCCATTGAACATGT+GGG 0.653078 1.4:+66487714 MS.gene005188:CDS
AAAAGGTCGAAGCCTTGATG+GGG 0.659766 1.4:+66488473 MS.gene005188:CDS
TGGTTGGTGATAGCTCGGGC+GGG 0.665839 1.4:+66488229 MS.gene005188:CDS
GTTGTCATGTTCTTCCACGG+TGG 0.676583 1.4:+66487991 MS.gene005188:CDS
GCAAATGCGAATCCTGTGGA+TGG 0.677631 1.4:+66487835 MS.gene005188:CDS
CAGGACGGTAGATTCGAGCA+AGG 0.690434 1.4:-66487900 None:intergenic
TAGCAAGTAAAACCCAACCG+TGG 0.774514 1.4:-66488619 None:intergenic
AATGTGCAAAACTTCCACCG+TGG 0.777602 1.4:-66488005 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATTGTATGCTAACTTGAAAT+TGG - chr1.4:66487749-66487768 None:intergenic 25.0%
!! CTTTTGATGTTATTGTTGAT+CGG + chr1.4:66487866-66487885 MS.gene005188:CDS 25.0%
!! TTTTGATGTTATTGTTGATC+GGG + chr1.4:66487867-66487886 MS.gene005188:CDS 25.0%
ACAGAGAAATGCTCATTATT+TGG - chr1.4:66488645-66488664 None:intergenic 30.0%
AAGGTTCATATCTACATGGT+TGG + chr1.4:66488213-66488232 MS.gene005188:CDS 35.0%
ATACTGCTAAACCCTTTGTT+TGG + chr1.4:66488312-66488331 MS.gene005188:CDS 35.0%
ATCAAAACCCACATGTTCAA+TGG - chr1.4:66487724-66487743 None:intergenic 35.0%
GCAGAGTAAAAAAGATAGCA+AGG + chr1.4:66488194-66488213 MS.gene005188:CDS 35.0%
TAGCAAGGTTCATATCTACA+TGG + chr1.4:66488209-66488228 MS.gene005188:CDS 35.0%
TGAAAGATAGAGACTGGTAT+TGG + chr1.4:66488391-66488410 MS.gene005188:CDS 35.0%
! TGGAAGTTTTGCACATTCTT+CGG + chr1.4:66488011-66488030 MS.gene005188:CDS 35.0%
!! AATGGGTTAACTCTAGAACT+TGG + chr1.4:66488169-66488188 MS.gene005188:CDS 35.0%
AAAGAGAAAACACCATCCAC+AGG - chr1.4:66487850-66487869 None:intergenic 40.0%
ACTTGGCAGAGTTTCTTGAT+CGG + chr1.4:66487803-66487822 MS.gene005188:CDS 40.0%
AGCAGTATATTTCCCAACAC+CGG - chr1.4:66488300-66488319 None:intergenic 40.0%
ATCCTTGCGCTTATGAAGAT+GGG + chr1.4:66488133-66488152 MS.gene005188:CDS 40.0%
ATGGGTGGAAAGCTGTTAAA+TGG + chr1.4:66488151-66488170 MS.gene005188:CDS 40.0%
CCAATGCTTTCAATGCAACA+TGG - chr1.4:66488266-66488285 None:intergenic 40.0%
GTTTGGATCTTGTTCAGGAT+TGG + chr1.4:66488529-66488548 MS.gene005188:CDS 40.0%
TATCCTTGCGCTTATGAAGA+TGG + chr1.4:66488132-66488151 MS.gene005188:CDS 40.0%
TCAGAGTGAAAGATAGAGAC+TGG + chr1.4:66488385-66488404 MS.gene005188:CDS 40.0%
TGAGCATTTCTCTGTTGTCA+TGG + chr1.4:66488650-66488669 MS.gene005188:CDS 40.0%
TGATACATTGTGTCGTCGAT+TGG + chr1.4:66488050-66488069 MS.gene005188:CDS 40.0%
TGGGTGGAAAGCTGTTAAAT+GGG + chr1.4:66488152-66488171 MS.gene005188:CDS 40.0%
TTGTAATGCTGTTGTCGTCT+CGG + chr1.4:66488080-66488099 MS.gene005188:CDS 40.0%
TTGTCGTCTCGGTGAATTAT+AGG + chr1.4:66488091-66488110 MS.gene005188:CDS 40.0%
! CCATGTTGCATTGAAAGCAT+TGG + chr1.4:66488263-66488282 MS.gene005188:CDS 40.0%
! CTTGTTCAGGATTGGCAATT+GGG + chr1.4:66488537-66488556 MS.gene005188:CDS 40.0%
! TCTTGTTCAGGATTGGCAAT+TGG + chr1.4:66488536-66488555 MS.gene005188:CDS 40.0%
! TGTAACCCTTTTGGTCCAAA+AGG + chr1.4:66488456-66488475 MS.gene005188:CDS 40.0%
! TTCGACCTTTTGGACCAAAA+GGG - chr1.4:66488464-66488483 None:intergenic 40.0%
!! AATCCGAAAAGCGTCTTGAT+GGG + chr1.4:66488352-66488371 MS.gene005188:CDS 40.0%
!! CATTGAAAGCATTGGACTCT+GGG + chr1.4:66488271-66488290 MS.gene005188:CDS 40.0%
AAAAGGTCGAAGCCTTGATG+GGG + chr1.4:66488473-66488492 MS.gene005188:CDS 45.0%
AATGTGCAAAACTTCCACCG+TGG - chr1.4:66488008-66488027 None:intergenic 45.0%
CAAAAGGTCGAAGCCTTGAT+GGG + chr1.4:66488472-66488491 MS.gene005188:CDS 45.0%
CAAGAAACTCTGCCAAGTCA+CGG - chr1.4:66487801-66487820 None:intergenic 45.0%
CACCACAAGACTCTTAGGAA+AGG - chr1.4:66488502-66488521 None:intergenic 45.0%
CCTGTTGTCATGTTCTTCCA+CGG + chr1.4:66487988-66488007 MS.gene005188:CDS 45.0%
GGTGGTTCCATTGAACATGT+GGG + chr1.4:66487714-66487733 MS.gene005188:CDS 45.0%
GTAGATTCGAGCAAGGAGAT+TGG - chr1.4:66487896-66487915 None:intergenic 45.0%
TAGCAAGTAAAACCCAACCG+TGG - chr1.4:66488622-66488641 None:intergenic 45.0%
TCACGGTTGAAAGTTCCATC+AGG - chr1.4:66487784-66487803 None:intergenic 45.0%
TCCAGCTTTCTCAAGTCCTT+TGG - chr1.4:66488568-66488587 None:intergenic 45.0%
TGAAAGTTCCATCAGGACGA+CGG - chr1.4:66487777-66487796 None:intergenic 45.0%
TGCCTTTCCTAAGAGTCTTG+TGG + chr1.4:66488497-66488516 MS.gene005188:CDS 45.0%
TGGAACTTTCAACCGTGACT+TGG + chr1.4:66487786-66487805 MS.gene005188:CDS 45.0%
TGGCAATTGGGATATGCCAA+AGG + chr1.4:66488549-66488568 MS.gene005188:CDS 45.0%
TGGTGGTTCCATTGAACATG+TGG + chr1.4:66487713-66487732 MS.gene005188:CDS 45.0%
TGTTGTTCTTCTCCCTCAAC+AGG - chr1.4:66487922-66487941 None:intergenic 45.0%
TTTCTTCCCCGCCAAACAAA+GGG - chr1.4:66488326-66488345 None:intergenic 45.0%
! ACATTGTGTCGTCGATTGGT+TGG + chr1.4:66488054-66488073 MS.gene005188:CDS 45.0%
! CTGCTAAACCCTTTGTTTGG+CGG + chr1.4:66488315-66488334 MS.gene005188:CDS 45.0%
! CTTCGACCTTTTGGACCAAA+AGG - chr1.4:66488465-66488484 None:intergenic 45.0%
! CTTTCCTAAGAGTCTTGTGG+TGG + chr1.4:66488500-66488519 MS.gene005188:CDS 45.0%
! GAGAGCTTTTCTTCCTGAAG+GGG + chr1.4:66488413-66488432 MS.gene005188:CDS 45.0%
! GCGCAAGGATACCTATTTTC+AGG - chr1.4:66488123-66488142 None:intergenic 45.0%
! GGAGAGCTTTTCTTCCTGAA+GGG + chr1.4:66488412-66488431 MS.gene005188:CDS 45.0%
! TCTCCCATCAAGACGCTTTT+CGG - chr1.4:66488358-66488377 None:intergenic 45.0%
! TGCTAAACCCTTTGTTTGGC+GGG + chr1.4:66488316-66488335 MS.gene005188:CDS 45.0%
! TGGAGAGCTTTTCTTCCTGA+AGG + chr1.4:66488411-66488430 MS.gene005188:CDS 45.0%
!! CTACATGGTTGGTGATAGCT+CGG + chr1.4:66488224-66488243 MS.gene005188:CDS 45.0%
!! GAATCCGAAAAGCGTCTTGA+TGG + chr1.4:66488351-66488370 MS.gene005188:CDS 45.0%
!! GCATTGAAAGCATTGGACTC+TGG + chr1.4:66488270-66488289 MS.gene005188:CDS 45.0%
!! TACATGGTTGGTGATAGCTC+GGG + chr1.4:66488225-66488244 MS.gene005188:CDS 45.0%
!! TGCTGGTTTGGATCTTGTTC+AGG + chr1.4:66488524-66488543 MS.gene005188:CDS 45.0%
AATCTTCTCCGTCGTCCTGA+TGG + chr1.4:66487766-66487785 MS.gene005188:CDS 50.0%
ATAGGCGTGCGCCTGAAAAT+AGG + chr1.4:66488109-66488128 MS.gene005188:CDS 50.0%
CACCCATCTTCATAAGCGCA+AGG - chr1.4:66488138-66488157 None:intergenic 50.0%
CAGCAGTAACAGGCTTCTCA+AGG - chr1.4:66487960-66487979 None:intergenic 50.0%
CCAAAAGGTCGAAGCCTTGA+TGG + chr1.4:66488471-66488490 MS.gene005188:CDS 50.0%
CCGTGGAAGAACATGACAAC+AGG - chr1.4:66487991-66488010 None:intergenic 50.0%
CGAATCTACCGTCCTGTTGA+GGG + chr1.4:66487907-66487926 MS.gene005188:CDS 50.0%
CTTGCGCTTATGAAGATGGG+TGG + chr1.4:66488136-66488155 MS.gene005188:CDS 50.0%
CTTTCTTCCCCGCCAAACAA+AGG - chr1.4:66488327-66488346 None:intergenic 50.0%
GCAAATGCGAATCCTGTGGA+TGG + chr1.4:66487835-66487854 MS.gene005188:CDS 50.0%
GCAACCACCACAAGACTCTT+AGG - chr1.4:66488507-66488526 None:intergenic 50.0%
GCCAAAGGACTTGAGAAAGC+TGG + chr1.4:66488564-66488583 MS.gene005188:CDS 50.0%
GGAAGAACCTCAGCAGTAAC+AGG - chr1.4:66487970-66487989 None:intergenic 50.0%
GTTCTTCTCCCTCAACAGGA+CGG - chr1.4:66487918-66487937 None:intergenic 50.0%
GTTGTCATGTTCTTCCACGG+TGG + chr1.4:66487991-66488010 MS.gene005188:CDS 50.0%
TAGGAAAGGCAACCCCATCA+AGG - chr1.4:66488488-66488507 None:intergenic 50.0%
TCCACAGGATTCGCATTTGC+TGG - chr1.4:66487835-66487854 None:intergenic 50.0%
TCCAGCAAATGCGAATCCTG+TGG + chr1.4:66487831-66487850 MS.gene005188:CDS 50.0%
TCGAATCTACCGTCCTGTTG+AGG + chr1.4:66487906-66487925 MS.gene005188:CDS 50.0%
TGAGAAGCCTGTTACTGCTG+AGG + chr1.4:66487960-66487979 MS.gene005188:CDS 50.0%
TGATCTCTGTCTTCCCCTTC+AGG - chr1.4:66488429-66488448 None:intergenic 50.0%
! AAGAGTCTTGTGGTGGTTGC+TGG + chr1.4:66488507-66488526 MS.gene005188:CDS 50.0%
! CATCACGCGTGTAACCCTTT+TGG + chr1.4:66488447-66488466 MS.gene005188:CDS 50.0%
! CCATCAAGGCTTCGACCTTT+TGG - chr1.4:66488474-66488493 None:intergenic 50.0%
! GCTAAACCCTTTGTTTGGCG+GGG + chr1.4:66488317-66488336 MS.gene005188:CDS 50.0%
! TCTTGTGGTGGTTGCTGGTT+TGG + chr1.4:66488512-66488531 MS.gene005188:CDS 50.0%
!! AGCATTGGACTCTGGGATTC+CGG + chr1.4:66488278-66488297 MS.gene005188:CDS 50.0%
!! GCTATTTCTCGAGCAAGCCA+CGG + chr1.4:66488602-66488621 MS.gene005188:CDS 50.0%
CAGGACGGTAGATTCGAGCA+AGG - chr1.4:66487903-66487922 None:intergenic 55.0%
TTCTCGAGCAAGCCACGGTT+GGG + chr1.4:66488607-66488626 MS.gene005188:CDS 55.0%
TTTCTCGAGCAAGCCACGGT+TGG + chr1.4:66488606-66488625 MS.gene005188:CDS 55.0%
!! ATGGTTGGTGATAGCTCGGG+CGG + chr1.4:66488228-66488247 MS.gene005188:CDS 55.0%
!! GACTCTGGGATTCCGGTGTT+GGG + chr1.4:66488285-66488304 MS.gene005188:CDS 55.0%
!! GGACTCTGGGATTCCGGTGT+TGG + chr1.4:66488284-66488303 MS.gene005188:CDS 60.0%
!! TGGTTGGTGATAGCTCGGGC+GGG + chr1.4:66488229-66488248 MS.gene005188:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 66487706 66488710 66487706 ID=MS.gene005188
chr1.4 mRNA 66487706 66488710 66487706 ID=MS.gene005188.t1;Parent=MS.gene005188
chr1.4 exon 66487706 66488710 66487706 ID=MS.gene005188.t1.exon1;Parent=MS.gene005188.t1
chr1.4 CDS 66487706 66488710 66487706 ID=cds.MS.gene005188.t1;Parent=MS.gene005188.t1
Gene Sequence

>MS.gene005188

ATGCAGATGGTGGTTCCATTGAACATGTGGGTTTTGATCTCCAATTTCAAGTTAGCATACAATCTTCTCCGTCGTCCTGATGGAACTTTCAACCGTGACTTGGCAGAGTTTCTTGATCGGAAAGTTCCAGCAAATGCGAATCCTGTGGATGGTGTTTTCTCTTTTGATGTTATTGTTGATCGGGAAACCAATCTCCTTGCTCGAATCTACCGTCCTGTTGAGGGAGAAGAACAACATGTGAACATTGTTGACCTTGAGAAGCCTGTTACTGCTGAGGTTCTTCCTGTTGTCATGTTCTTCCACGGTGGAAGTTTTGCACATTCTTCGGCTAACAGTGCTATTTATGATACATTGTGTCGTCGATTGGTTGGTATTTGTAATGCTGTTGTCGTCTCGGTGAATTATAGGCGTGCGCCTGAAAATAGGTATCCTTGCGCTTATGAAGATGGGTGGAAAGCTGTTAAATGGGTTAACTCTAGAACTTGGCTGCAGAGTAAAAAAGATAGCAAGGTTCATATCTACATGGTTGGTGATAGCTCGGGCGGGAACATTGTGCACCATGTTGCATTGAAAGCATTGGACTCTGGGATTCCGGTGTTGGGAAATATACTGCTAAACCCTTTGTTTGGCGGGGAAGAAAGAACAGAATCCGAAAAGCGTCTTGATGGGAGATATTTTGTCAGAGTGAAAGATAGAGACTGGTATTGGAGAGCTTTTCTTCCTGAAGGGGAAGACAGAGATCATCACGCGTGTAACCCTTTTGGTCCAAAAGGTCGAAGCCTTGATGGGGTTGCCTTTCCTAAGAGTCTTGTGGTGGTTGCTGGTTTGGATCTTGTTCAGGATTGGCAATTGGGATATGCCAAAGGACTTGAGAAAGCTGGACAAAATGTGAAGTTGCTATTTCTCGAGCAAGCCACGGTTGGGTTTTACTTGCTACCAAATAATGAGCATTTCTCTGTTGTCATGGATGAGATAAAACATTTTGTCAACTCTGACTGTTCATAG
Protein sequence

>MS.gene005188.t1

MQMVVPLNMWVLISNFKLAYNLLRRPDGTFNRDLAEFLDRKVPANANPVDGVFSFDVIVDRETNLLARIYRPVEGEEQHVNIVDLEKPVTAEVLPVVMFFHGGSFAHSSANSAIYDTLCRRLVGICNAVVVSVNYRRAPENRYPCAYEDGWKAVKWVNSRTWLQSKKDSKVHIYMVGDSSGGNIVHHVALKALDSGIPVLGNILLNPLFGGEERTESEKRLDGRYFVRVKDRDWYWRAFLPEGEDRDHHACNPFGPKGRSLDGVAFPKSLVVVAGLDLVQDWQLGYAKGLEKAGQNVKLLFLEQATVGFYLLPNNEHFSVVMDEIKHFVNSDCS