Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029421.t1 | XP_003592638.2 | 99.5 | 790 | 4 | 0 | 2 | 791 | 5 | 794 | 0.00E+00 | 1597.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029421.t1 | P52780 | 86.8 | 786 | 103 | 1 | 6 | 791 | 10 | 794 | 0.0e+00 | 1400.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029421.t1 | G7ICA2 | 99.5 | 790 | 4 | 0 | 2 | 791 | 5 | 794 | 0.0e+00 | 1597.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene061256 | MS.gene029421 | PPI |
| MS.gene26848 | MS.gene029421 | PPI |
| MS.gene80766 | MS.gene029421 | PPI |
| MS.gene031761 | MS.gene029421 | PPI |
| MS.gene68406 | MS.gene029421 | PPI |
| MS.gene030099 | MS.gene029421 | PPI |
| MS.gene029421 | MS.gene065875 | PPI |
| MS.gene052373 | MS.gene029421 | PPI |
| MS.gene037771 | MS.gene029421 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029421.t1 | MTR_1g110430 | 99.494 | 790 | 4 | 0 | 2 | 791 | 5 | 794 | 0.0 | 1628 |
| MS.gene029421.t1 | MTR_1g085150 | 32.271 | 502 | 323 | 7 | 266 | 766 | 225 | 710 | 1.18e-67 | 238 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029421.t1 | AT1G25350 | 76.366 | 787 | 183 | 2 | 8 | 791 | 9 | 795 | 0.0 | 1268 |
| MS.gene029421.t1 | AT1G25350 | 74.874 | 792 | 191 | 3 | 8 | 791 | 9 | 800 | 0.0 | 1241 |
| MS.gene029421.t1 | AT5G26710 | 33.665 | 502 | 316 | 9 | 266 | 766 | 212 | 697 | 1.29e-70 | 246 |
| MS.gene029421.t1 | AT5G19720 | 56.923 | 195 | 58 | 2 | 598 | 791 | 1 | 170 | 8.85e-68 | 222 |
| MS.gene029421.t1 | AT1G68325 | 58.904 | 73 | 23 | 1 | 718 | 790 | 31 | 96 | 7.28e-22 | 91.3 |
Find 173 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGCGATGTTTATTGATTT+TGG | 0.078301 | 1.4:+84269833 | MS.gene029421:intron |
| ATAACTTCAGTGCACTTTAT+AGG | 0.185994 | 1.4:-84277272 | None:intergenic |
| AGATTCAATGATTCTGAAAT+TGG | 0.239159 | 1.4:-84271799 | None:intergenic |
| TGAAGTATTTGAGGAGAATA+AGG | 0.245021 | 1.4:+84268562 | MS.gene029421:CDS |
| CCTTATTGCATATCGAATTA+AGG | 0.252842 | 1.4:+84271915 | MS.gene029421:CDS |
| TATAATTTACCGTGTAAATA+AGG | 0.262860 | 1.4:-84267249 | None:intergenic |
| ATGAGACTATTCTTGAAATT+CGG | 0.263391 | 1.4:+84277309 | MS.gene029421:CDS |
| CGGCTAAATCATACAATTCT+TGG | 0.286989 | 1.4:-84271291 | None:intergenic |
| CCTAATGGATATTTGCATAT+TGG | 0.298235 | 1.4:+84269712 | MS.gene029421:CDS |
| CTATAGTAAGGGTGGAAAAT+AGG | 0.314797 | 1.4:+84277940 | MS.gene029421:CDS |
| TGAGACTATTCTTGAAATTC+GGG | 0.346853 | 1.4:+84277310 | MS.gene029421:CDS |
| AGAATAGTACCATCGCTAAA+AGG | 0.349411 | 1.4:-84269607 | None:intergenic |
| CCTTAATTCGATATGCAATA+AGG | 0.350425 | 1.4:-84271915 | None:intergenic |
| CTGAGGAGATAAAGGAGTAT+AGG | 0.353345 | 1.4:+84271743 | MS.gene029421:CDS |
| CGGTTTCCTCCCGAGCCTAA+TGG | 0.353730 | 1.4:+84269697 | MS.gene029421:CDS |
| TGAGGAGATAAAGGAGTATA+GGG | 0.362415 | 1.4:+84271744 | MS.gene029421:CDS |
| CGATGCTGTAAGGCATTTCC+AGG | 0.362741 | 1.4:-84267748 | None:intergenic |
| TTGAAGTCAGGCTGTTTGAT+AGG | 0.371366 | 1.4:+84277508 | MS.gene029421:CDS |
| TTGATAGGGTGTTCTCCATT+GGG | 0.373984 | 1.4:+84277449 | MS.gene029421:intron |
| GGATCATCAGCTTGGGCATC+AGG | 0.376841 | 1.4:-84275880 | None:intergenic |
| CGCGCCGTGCTTCATACTAT+TGG | 0.385788 | 1.4:+84272737 | MS.gene029421:CDS |
| ATTGATAGGGTGTTCTCCAT+TGG | 0.386993 | 1.4:+84277448 | MS.gene029421:intron |
| GTATTTACCAACCTTATGTA+TGG | 0.387845 | 1.4:+84272776 | MS.gene029421:CDS |
| GAGGTAATTCCAAATGCATT+TGG | 0.388200 | 1.4:+84277697 | MS.gene029421:CDS |
| TATTGGTTGTTGCATGCATT+AGG | 0.389406 | 1.4:+84272754 | MS.gene029421:CDS |
| TGATGACATTAGCTGGTTTA+CGG | 0.390710 | 1.4:+84272996 | MS.gene029421:CDS |
| TTGTGCTTATGTTGATCATC+AGG | 0.392938 | 1.4:+84271333 | MS.gene029421:CDS |
| CTTCCCTAACATGATATTCA+AGG | 0.397704 | 1.4:-84275673 | None:intergenic |
| AATGGATTGAGATCTTCTTC+TGG | 0.398450 | 1.4:-84269128 | None:intergenic |
| AATATATACAACGTTGGAAA+AGG | 0.399492 | 1.4:-84277088 | None:intergenic |
| CATTACCTAATCTTTCAAAC+TGG | 0.409686 | 1.4:-84277759 | None:intergenic |
| TGCAAAATTATATGAGCTAC+TGG | 0.410648 | 1.4:+84268912 | MS.gene029421:CDS |
| AAAGATTCAAAAGATTATTA+CGG | 0.410890 | 1.4:+84277132 | MS.gene029421:CDS |
| AGCTGTTAATGAAGTATTTG+AGG | 0.411819 | 1.4:+84268553 | MS.gene029421:CDS |
| AATAAGGTTTCCAACAGTTC+GGG | 0.413362 | 1.4:-84267233 | None:intergenic |
| AAATAAGGTTTCCAACAGTT+CGG | 0.414367 | 1.4:-84267234 | None:intergenic |
| TTACTAGTTGGTGAGTTACT+TGG | 0.414784 | 1.4:+84268733 | MS.gene029421:intron |
| CACTCCGTGATGCAAAAGTT+GGG | 0.415700 | 1.4:+84277728 | MS.gene029421:CDS |
| GAGGGCAGACCAAATGCATT+TGG | 0.419936 | 1.4:-84277706 | None:intergenic |
| ATTTCTTGCCAATACGGGTT+CGG | 0.420438 | 1.4:+84268037 | MS.gene029421:CDS |
| ACTATCATTTCTTGCCAATA+CGG | 0.420572 | 1.4:+84268031 | MS.gene029421:CDS |
| GTCGCCTTGAATATCATGTT+AGG | 0.427051 | 1.4:+84275669 | MS.gene029421:CDS |
| GTAGACACCTGAGGAGATAA+AGG | 0.427662 | 1.4:+84271735 | MS.gene029421:intron |
| CTATACTCCTTTATCTCCTC+AGG | 0.428879 | 1.4:-84271742 | None:intergenic |
| GACAAGCATTTGAAAGCAAC+AGG | 0.432915 | 1.4:+84269658 | MS.gene029421:CDS |
| CTTGAATATTCCCATACATA+AGG | 0.434106 | 1.4:-84272787 | None:intergenic |
| AGTTTCCAGTTTGAAAGATT+AGG | 0.434602 | 1.4:+84277754 | MS.gene029421:CDS |
| ACGTGCGAAAGAGGCTTCCA+TGG | 0.435748 | 1.4:+84268758 | MS.gene029421:CDS |
| CTTCAAATTTATTCACATCC+AGG | 0.441234 | 1.4:-84268064 | None:intergenic |
| GATTATTACGGCCTTGCTCC+TGG | 0.443530 | 1.4:+84277144 | MS.gene029421:CDS |
| CCAATATGCAAATATCCATT+AGG | 0.445438 | 1.4:-84269712 | None:intergenic |
| AAACTCACCTCTACTTTAGC+AGG | 0.448864 | 1.4:-84268988 | None:intergenic |
| ATCCTGCCGAACTTGACAAT+TGG | 0.449418 | 1.4:+84277647 | MS.gene029421:CDS |
| CTTATGTATGGGAATATTCA+AGG | 0.450934 | 1.4:+84272788 | MS.gene029421:CDS |
| TCCATTGAAGCTTAATCGCC+TGG | 0.452017 | 1.4:+84272934 | MS.gene029421:intron |
| TTTGAAGAAGCGTGTGGAGT+TGG | 0.453075 | 1.4:+84268080 | MS.gene029421:CDS |
| TCACTCCGTGATGCAAAAGT+TGG | 0.455130 | 1.4:+84277727 | MS.gene029421:CDS |
| GTGGATAACGGCGGTGAGAT+TGG | 0.455593 | 1.4:-84267185 | None:intergenic |
| ACAGCATCGACCAACATTGC+TGG | 0.456248 | 1.4:+84267762 | MS.gene029421:CDS |
| CAGTGAGCATAATCATAACT+TGG | 0.456666 | 1.4:-84272054 | None:intergenic |
| AAAGATAACCAACCTCTGAT+AGG | 0.457491 | 1.4:-84277536 | None:intergenic |
| TAACAGAACTGTCACATTGA+AGG | 0.458470 | 1.4:+84277913 | MS.gene029421:CDS |
| GAACTACGCTATCGAACAAA+TGG | 0.464729 | 1.4:+84268596 | MS.gene029421:CDS |
| ATCCATTGAAGGTTGAAGTC+AGG | 0.465275 | 1.4:+84277496 | MS.gene029421:CDS |
| ATTGAAGGACAGCTATAGTA+AGG | 0.465317 | 1.4:+84277928 | MS.gene029421:CDS |
| GCCAAGCCAATTGTCAAGTT+CGG | 0.467361 | 1.4:-84277653 | None:intergenic |
| AGCCTGACTTCAACCTTCAA+TGG | 0.471327 | 1.4:-84277498 | None:intergenic |
| GTTACCGAAAAGTGGGTTGA+TGG | 0.476547 | 1.4:+84272956 | MS.gene029421:CDS |
| CTATCATTTCTTGCCAATAC+GGG | 0.481213 | 1.4:+84268032 | MS.gene029421:CDS |
| CCTCGCCTGATGACATTAGC+TGG | 0.482367 | 1.4:+84272989 | MS.gene029421:CDS |
| CAATGTTGGTCGATGCTGTA+AGG | 0.483343 | 1.4:-84267758 | None:intergenic |
| TACTTGGGCACGTGCGAAAG+AGG | 0.484463 | 1.4:+84268749 | MS.gene029421:CDS |
| GAAATTGGTCTGTCCCTCCA+TGG | 0.485714 | 1.4:-84271784 | None:intergenic |
| GCCGAACTTGACAATTGGCT+TGG | 0.487061 | 1.4:+84277652 | MS.gene029421:CDS |
| AGCCAATTGTCAAGTTCGGC+AGG | 0.490419 | 1.4:-84277649 | None:intergenic |
| AATGGATCAACTTCATGAGC+AGG | 0.491526 | 1.4:-84277480 | None:intergenic |
| AACGGCAGCCTCGTGGATAA+CGG | 0.493801 | 1.4:-84267197 | None:intergenic |
| TGATAGGCTGTTCCTATCAG+AGG | 0.496046 | 1.4:+84277524 | MS.gene029421:CDS |
| TGAAGAAATTGTCCAGTGGA+TGG | 0.496361 | 1.4:+84271153 | MS.gene029421:CDS |
| GGTGACTTTGTTATTAGCAA+TGG | 0.497008 | 1.4:-84267161 | None:intergenic |
| TGCAAATATCCATTAGGCTC+GGG | 0.498380 | 1.4:-84269706 | None:intergenic |
| AGCAGATGGATCATCAGCTT+GGG | 0.498557 | 1.4:-84275887 | None:intergenic |
| TGAAGCTAACTCAACAATTG+AGG | 0.500307 | 1.4:+84275840 | MS.gene029421:CDS |
| CAATACGGGTTCGGAAAACC+TGG | 0.501361 | 1.4:+84268046 | MS.gene029421:CDS |
| ATATATACAACGTTGGAAAA+GGG | 0.501618 | 1.4:-84277087 | None:intergenic |
| GTAAACCAGCTAATGTCATC+AGG | 0.504398 | 1.4:-84272994 | None:intergenic |
| TACTAGTTGGTGAGTTACTT+GGG | 0.509631 | 1.4:+84268734 | MS.gene029421:intron |
| TTTACTCCGCACCCTCATGC+TGG | 0.516515 | 1.4:+84272012 | MS.gene029421:CDS |
| CTGAGTATCGCAGATTTGCC+AGG | 0.517883 | 1.4:-84277162 | None:intergenic |
| AAGCAGATGGATCATCAGCT+TGG | 0.520046 | 1.4:-84275888 | None:intergenic |
| TCATGAAGTTGATCCATTGA+AGG | 0.520442 | 1.4:+84277485 | MS.gene029421:CDS |
| ATCGCCTGGTTACCGAAAAG+TGG | 0.520705 | 1.4:+84272948 | MS.gene029421:CDS |
| TTGTCTCCAGCATGAGGGTG+CGG | 0.520931 | 1.4:-84272018 | None:intergenic |
| TAGCTGGTTTACGGCGTAGA+GGG | 0.525572 | 1.4:+84273005 | MS.gene029421:CDS |
| GAGGAATTGGAATCACTAGA+AGG | 0.525621 | 1.4:+84273059 | MS.gene029421:CDS |
| ACCCTCATGCTGGAGACAAA+TGG | 0.525756 | 1.4:+84272022 | MS.gene029421:CDS |
| ATGGTTTCCATCCCATCCAC+TGG | 0.525936 | 1.4:-84271165 | None:intergenic |
| ATGCAAATATCCATTAGGCT+CGG | 0.528175 | 1.4:-84269707 | None:intergenic |
| AACAGTTCGGGTGCAGCCAT+CGG | 0.529593 | 1.4:-84267221 | None:intergenic |
| CGTTGTATATATTGAACGTA+CGG | 0.530723 | 1.4:+84277098 | MS.gene029421:CDS |
| GATGGCTGCACCCGAACTGT+TGG | 0.531877 | 1.4:+84267223 | MS.gene029421:CDS |
| TCGGGTGCAGCCATCGGTAA+CGG | 0.532486 | 1.4:-84267215 | None:intergenic |
| TAGTCCAGAGGAAAATTTGA+AGG | 0.536130 | 1.4:+84269163 | MS.gene029421:CDS |
| AGAAGAAATTGAACAGTCCA+TGG | 0.538575 | 1.4:+84271767 | MS.gene029421:CDS |
| AATATTCCCATACATAAGGT+TGG | 0.540298 | 1.4:-84272783 | None:intergenic |
| TATTTACCAACCTTATGTAT+GGG | 0.540656 | 1.4:+84272777 | MS.gene029421:CDS |
| TCGCCTTGAATATCATGTTA+GGG | 0.540818 | 1.4:+84275670 | MS.gene029421:CDS |
| CAAAACAGCTCCTCGAACAA+TGG | 0.541666 | 1.4:+84275703 | MS.gene029421:CDS |
| CGAAAAGTGGGTTGATGGGT+GGG | 0.548227 | 1.4:+84272961 | MS.gene029421:CDS |
| AGACGTGGTCTTGTAGAAGA+AGG | 0.551914 | 1.4:+84271835 | MS.gene029421:CDS |
| ACAACATATTCCAGCAATGT+TGG | 0.552257 | 1.4:-84267772 | None:intergenic |
| CTGGCAAATCTGCGATACTC+AGG | 0.553968 | 1.4:+84277163 | MS.gene029421:CDS |
| CACTGTTATGTCGAAGCGCA+AGG | 0.554048 | 1.4:+84272825 | MS.gene029421:CDS |
| CCGAAAAGTGGGTTGATGGG+TGG | 0.554800 | 1.4:+84272960 | MS.gene029421:CDS |
| CACGAGGCTGCCGTTACCGA+TGG | 0.559303 | 1.4:+84267205 | MS.gene029421:CDS |
| GGTTGTCTTGCACCCACTCA+AGG | 0.560414 | 1.4:+84275724 | MS.gene029421:CDS |
| GGCTGATGCAAAAGCTGTCA+AGG | 0.561646 | 1.4:+84268780 | MS.gene029421:CDS |
| TGTTGGAAACCTTATTTACA+CGG | 0.564262 | 1.4:+84267240 | MS.gene029421:CDS |
| TCTGAACCCTCATTCAAAAG+AGG | 0.564421 | 1.4:+84277678 | MS.gene029421:CDS |
| GGATTGAGATCTTCTTCTGG+TGG | 0.565763 | 1.4:-84269125 | None:intergenic |
| CGTGCGAAAGAGGCTTCCAT+GGG | 0.566216 | 1.4:+84268759 | MS.gene029421:CDS |
| AACAGACAAAATACCTTGAG+TGG | 0.566641 | 1.4:-84275737 | None:intergenic |
| GATGGGATGGAAACCATTCA+AGG | 0.570675 | 1.4:+84271171 | MS.gene029421:CDS |
| ATTACCTTGTAGAAAGCAGA+TGG | 0.572394 | 1.4:-84275901 | None:intergenic |
| TGATCCATCTGCTTTCTACA+AGG | 0.576675 | 1.4:+84275897 | MS.gene029421:CDS |
| TGCAAGACAACCATTGTTCG+AGG | 0.578367 | 1.4:-84275713 | None:intergenic |
| CACCATTTGTCTCCAGCATG+AGG | 0.578697 | 1.4:-84272024 | None:intergenic |
| GAAGGAAGATATCTTAGAGA+AGG | 0.581067 | 1.4:+84267081 | MS.gene029421:intron |
| TGATATATGTGCAGGTGTTG+AGG | 0.586897 | 1.4:+84268508 | MS.gene029421:intron |
| TCGCCTGGTTACCGAAAAGT+GGG | 0.588105 | 1.4:+84272949 | MS.gene029421:CDS |
| GAGCAGGTTGTGCAACCCAA+TGG | 0.588412 | 1.4:-84277464 | None:intergenic |
| TTACCGAAAAGTGGGTTGAT+GGG | 0.590330 | 1.4:+84272957 | MS.gene029421:CDS |
| GGAATATGTTGTTTCATCCA+AGG | 0.591177 | 1.4:+84267783 | MS.gene029421:CDS |
| AAATTGTCCAGTGGATGGGA+TGG | 0.593412 | 1.4:+84271158 | MS.gene029421:CDS |
| TTTGCATATTGGTCATGCCA+AGG | 0.597648 | 1.4:+84269723 | MS.gene029421:CDS |
| TCGCAGATTTGCCAGGAGCA+AGG | 0.603339 | 1.4:-84277155 | None:intergenic |
| GCCGTGGAGCTCATAAGAAG+AGG | 0.606247 | 1.4:+84271310 | MS.gene029421:CDS |
| AAGGACAGCTATAGTAAGGG+TGG | 0.606859 | 1.4:+84277932 | MS.gene029421:CDS |
| GTCTTGCTTCATTCGCAGTG+TGG | 0.607399 | 1.4:-84271863 | None:intergenic |
| GAAGAAATTGTCCAGTGGAT+GGG | 0.608057 | 1.4:+84271154 | MS.gene029421:CDS |
| AGAGAAACCTGCTAAAGTAG+AGG | 0.608147 | 1.4:+84268981 | MS.gene029421:CDS |
| GAAATTGAACAGTCCATGGA+GGG | 0.611407 | 1.4:+84271771 | MS.gene029421:CDS |
| AATAAATTTGAAGAAGCGTG+TGG | 0.620386 | 1.4:+84268074 | MS.gene029421:CDS |
| TTTGATATTCCCTAGTCCAG+AGG | 0.621334 | 1.4:+84269151 | MS.gene029421:CDS |
| AGTGAGCATAATCATAACTT+GGG | 0.623564 | 1.4:-84272053 | None:intergenic |
| GGGTTGGCAAAAGACAGAGA+TGG | 0.630895 | 1.4:+84269854 | MS.gene029421:CDS |
| AAGCATTTGAAAGCAACAGG+TGG | 0.630979 | 1.4:+84269661 | MS.gene029421:CDS |
| ACCATTTGTCTCCAGCATGA+GGG | 0.632136 | 1.4:-84272023 | None:intergenic |
| GAGATGGAGGTTGCTACCTG+AGG | 0.632641 | 1.4:+84269870 | MS.gene029421:CDS |
| CAGGTTGCAACAAAATACCC+TGG | 0.634042 | 1.4:+84267730 | MS.gene029421:intron |
| ACTCCGTGATGCAAAAGTTG+GGG | 0.634974 | 1.4:+84277729 | MS.gene029421:CDS |
| AGCATTTGAAAGCAACAGGT+GGG | 0.637401 | 1.4:+84269662 | MS.gene029421:CDS |
| CATCGGTAACGGCAGCCTCG+TGG | 0.638213 | 1.4:-84267204 | None:intergenic |
| ACCTCTTCTTATGAGCTCCA+CGG | 0.641721 | 1.4:-84271311 | None:intergenic |
| AAATATCCATTAGGCTCGGG+AGG | 0.644834 | 1.4:-84269703 | None:intergenic |
| CCAGCTAATGTCATCAGGCG+AGG | 0.651747 | 1.4:-84272989 | None:intergenic |
| ACAACCAATAGTATGAAGCA+CGG | 0.653300 | 1.4:-84272741 | None:intergenic |
| TTGGCAAAAGACAGAGATGG+AGG | 0.655596 | 1.4:+84269857 | MS.gene029421:CDS |
| TTGAAGGACAGCTATAGTAA+GGG | 0.656111 | 1.4:+84277929 | MS.gene029421:CDS |
| ACAGACAAAATACCTTGAGT+GGG | 0.656269 | 1.4:-84275736 | None:intergenic |
| GATAACGGCGGTGAGATTGG+TGG | 0.656822 | 1.4:-84267182 | None:intergenic |
| TTAGCTGGTTTACGGCGTAG+AGG | 0.660909 | 1.4:+84273004 | MS.gene029421:CDS |
| AGAATTGTATGATTTAGCCG+TGG | 0.661708 | 1.4:+84271294 | MS.gene029421:CDS |
| TGATTATGCTCACTGCATCG+TGG | 0.676182 | 1.4:+84272062 | MS.gene029421:CDS |
| AGAAATTGAACAGTCCATGG+AGG | 0.677303 | 1.4:+84271770 | MS.gene029421:CDS |
| ACGTTCAATATATACAACGT+TGG | 0.685014 | 1.4:-84277094 | None:intergenic |
| ATCATTGCAGGTGAAAACAA+CGG | 0.687951 | 1.4:+84267992 | MS.gene029421:intron |
| GATGCTGTAAGGCATTTCCA+GGG | 0.696093 | 1.4:-84267747 | None:intergenic |
| ACATTGAAGAAATTGTCCAG+TGG | 0.705711 | 1.4:+84271149 | MS.gene029421:CDS |
| GGCAGCCTCGTGGATAACGG+CGG | 0.708962 | 1.4:-84267194 | None:intergenic |
| GCAAAATTATATGAGCTACT+GGG | 0.716316 | 1.4:+84268913 | MS.gene029421:CDS |
| TCTCACCGCCGTTATCCACG+AGG | 0.734573 | 1.4:+84267189 | MS.gene029421:CDS |
| GATTTGGTTGTAGACACCTG+AGG | 0.739238 | 1.4:+84271726 | MS.gene029421:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 84266906 | 84277961 | 84266906 | ID=MS.gene029421 |
| chr1.4 | mRNA | 84266906 | 84277961 | 84266906 | ID=MS.gene029421.t1;Parent=MS.gene029421 |
| chr1.4 | exon | 84266906 | 84266908 | 84266906 | ID=MS.gene029421.t1.exon1;Parent=MS.gene029421.t1 |
| chr1.4 | CDS | 84266906 | 84266908 | 84266906 | ID=cds.MS.gene029421.t1;Parent=MS.gene029421.t1 |
| chr1.4 | exon | 84267085 | 84267261 | 84267085 | ID=MS.gene029421.t1.exon2;Parent=MS.gene029421.t1 |
| chr1.4 | CDS | 84267085 | 84267261 | 84267085 | ID=cds.MS.gene029421.t1;Parent=MS.gene029421.t1 |
| chr1.4 | exon | 84267733 | 84267804 | 84267733 | ID=MS.gene029421.t1.exon3;Parent=MS.gene029421.t1 |
| chr1.4 | CDS | 84267733 | 84267804 | 84267733 | ID=cds.MS.gene029421.t1;Parent=MS.gene029421.t1 |
| chr1.4 | exon | 84268002 | 84268101 | 84268002 | ID=MS.gene029421.t1.exon4;Parent=MS.gene029421.t1 |
| chr1.4 | CDS | 84268002 | 84268101 | 84268002 | ID=cds.MS.gene029421.t1;Parent=MS.gene029421.t1 |
| chr1.4 | exon | 84268522 | 84268617 | 84268522 | ID=MS.gene029421.t1.exon5;Parent=MS.gene029421.t1 |
| chr1.4 | CDS | 84268522 | 84268617 | 84268522 | ID=cds.MS.gene029421.t1;Parent=MS.gene029421.t1 |
| chr1.4 | exon | 84268740 | 84268801 | 84268740 | ID=MS.gene029421.t1.exon6;Parent=MS.gene029421.t1 |
| chr1.4 | CDS | 84268740 | 84268801 | 84268740 | ID=cds.MS.gene029421.t1;Parent=MS.gene029421.t1 |
| chr1.4 | exon | 84268901 | 84269002 | 84268901 | ID=MS.gene029421.t1.exon7;Parent=MS.gene029421.t1 |
| chr1.4 | CDS | 84268901 | 84269002 | 84268901 | ID=cds.MS.gene029421.t1;Parent=MS.gene029421.t1 |
| chr1.4 | exon | 84269092 | 84269184 | 84269092 | ID=MS.gene029421.t1.exon8;Parent=MS.gene029421.t1 |
| chr1.4 | CDS | 84269092 | 84269184 | 84269092 | ID=cds.MS.gene029421.t1;Parent=MS.gene029421.t1 |
| chr1.4 | exon | 84269592 | 84269744 | 84269592 | ID=MS.gene029421.t1.exon9;Parent=MS.gene029421.t1 |
| chr1.4 | CDS | 84269592 | 84269744 | 84269592 | ID=cds.MS.gene029421.t1;Parent=MS.gene029421.t1 |
| chr1.4 | exon | 84269836 | 84269891 | 84269836 | ID=MS.gene029421.t1.exon10;Parent=MS.gene029421.t1 |
| chr1.4 | CDS | 84269836 | 84269891 | 84269836 | ID=cds.MS.gene029421.t1;Parent=MS.gene029421.t1 |
| chr1.4 | exon | 84271102 | 84271192 | 84271102 | ID=MS.gene029421.t1.exon11;Parent=MS.gene029421.t1 |
| chr1.4 | CDS | 84271102 | 84271192 | 84271102 | ID=cds.MS.gene029421.t1;Parent=MS.gene029421.t1 |
| chr1.4 | exon | 84271268 | 84271354 | 84271268 | ID=MS.gene029421.t1.exon12;Parent=MS.gene029421.t1 |
| chr1.4 | CDS | 84271268 | 84271354 | 84271268 | ID=cds.MS.gene029421.t1;Parent=MS.gene029421.t1 |
| chr1.4 | exon | 84271739 | 84271936 | 84271739 | ID=MS.gene029421.t1.exon13;Parent=MS.gene029421.t1 |
| chr1.4 | CDS | 84271739 | 84271936 | 84271739 | ID=cds.MS.gene029421.t1;Parent=MS.gene029421.t1 |
| chr1.4 | exon | 84272012 | 84272110 | 84272012 | ID=MS.gene029421.t1.exon14;Parent=MS.gene029421.t1 |
| chr1.4 | CDS | 84272012 | 84272110 | 84272012 | ID=cds.MS.gene029421.t1;Parent=MS.gene029421.t1 |
| chr1.4 | exon | 84272715 | 84272846 | 84272715 | ID=MS.gene029421.t1.exon15;Parent=MS.gene029421.t1 |
| chr1.4 | CDS | 84272715 | 84272846 | 84272715 | ID=cds.MS.gene029421.t1;Parent=MS.gene029421.t1 |
| chr1.4 | exon | 84272944 | 84273080 | 84272944 | ID=MS.gene029421.t1.exon16;Parent=MS.gene029421.t1 |
| chr1.4 | CDS | 84272944 | 84273080 | 84272944 | ID=cds.MS.gene029421.t1;Parent=MS.gene029421.t1 |
| chr1.4 | exon | 84275646 | 84275745 | 84275646 | ID=MS.gene029421.t1.exon17;Parent=MS.gene029421.t1 |
| chr1.4 | CDS | 84275646 | 84275745 | 84275646 | ID=cds.MS.gene029421.t1;Parent=MS.gene029421.t1 |
| chr1.4 | exon | 84275823 | 84275918 | 84275823 | ID=MS.gene029421.t1.exon18;Parent=MS.gene029421.t1 |
| chr1.4 | CDS | 84275823 | 84275918 | 84275823 | ID=cds.MS.gene029421.t1;Parent=MS.gene029421.t1 |
| chr1.4 | exon | 84277084 | 84277184 | 84277084 | ID=MS.gene029421.t1.exon19;Parent=MS.gene029421.t1 |
| chr1.4 | CDS | 84277084 | 84277184 | 84277084 | ID=cds.MS.gene029421.t1;Parent=MS.gene029421.t1 |
| chr1.4 | exon | 84277262 | 84277367 | 84277262 | ID=MS.gene029421.t1.exon20;Parent=MS.gene029421.t1 |
| chr1.4 | CDS | 84277262 | 84277367 | 84277262 | ID=cds.MS.gene029421.t1;Parent=MS.gene029421.t1 |
| chr1.4 | exon | 84277456 | 84277545 | 84277456 | ID=MS.gene029421.t1.exon21;Parent=MS.gene029421.t1 |
| chr1.4 | CDS | 84277456 | 84277545 | 84277456 | ID=cds.MS.gene029421.t1;Parent=MS.gene029421.t1 |
| chr1.4 | exon | 84277646 | 84277775 | 84277646 | ID=MS.gene029421.t1.exon22;Parent=MS.gene029421.t1 |
| chr1.4 | CDS | 84277646 | 84277775 | 84277646 | ID=cds.MS.gene029421.t1;Parent=MS.gene029421.t1 |
| chr1.4 | exon | 84277867 | 84277961 | 84277867 | ID=MS.gene029421.t1.exon23;Parent=MS.gene029421.t1 |
| chr1.4 | CDS | 84277867 | 84277961 | 84277867 | ID=cds.MS.gene029421.t1;Parent=MS.gene029421.t1 |
| Gene Sequence |
| Protein sequence |
