Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031761.t1 | XP_003607408.1 | 98.6 | 806 | 11 | 0 | 1 | 806 | 1 | 806 | 0.00E+00 | 1630.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031761.t1 | Q9ZTS1 | 75.2 | 799 | 191 | 3 | 9 | 806 | 9 | 801 | 0.0e+00 | 1267.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031761.t1 | G7JSP8 | 98.6 | 806 | 11 | 0 | 1 | 806 | 1 | 806 | 0.0e+00 | 1630.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031761.t1 | MTR_4g077700 | 98.635 | 806 | 11 | 0 | 1 | 806 | 1 | 806 | 0.0 | 1659 |
MS.gene031761.t1 | MTR_4g122580 | 82.134 | 806 | 137 | 3 | 1 | 806 | 1 | 799 | 0.0 | 1365 |
MS.gene031761.t1 | MTR_1g115295 | 26.974 | 608 | 350 | 22 | 19 | 598 | 59 | 600 | 3.23e-48 | 181 |
MS.gene031761.t1 | MTR_3g093870 | 39.837 | 246 | 130 | 3 | 578 | 806 | 144 | 388 | 1.43e-43 | 162 |
MS.gene031761.t1 | MTR_4g040350 | 47.024 | 168 | 75 | 2 | 648 | 805 | 93 | 256 | 2.42e-36 | 138 |
MS.gene031761.t1 | MTR_4g122620 | 42.945 | 163 | 49 | 6 | 117 | 267 | 13 | 143 | 1.42e-28 | 114 |
MS.gene031761.t1 | MTR_4g122620 | 64.615 | 65 | 11 | 1 | 349 | 413 | 142 | 194 | 2.72e-15 | 75.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031761.t1 | AT4G13780 | 74.102 | 807 | 198 | 6 | 1 | 806 | 1 | 797 | 0.0 | 1251 |
MS.gene031761.t1 | AT2G40660 | 49.390 | 164 | 82 | 1 | 643 | 806 | 227 | 389 | 2.55e-42 | 159 |
MS.gene031761.t1 | AT3G55400 | 26.576 | 587 | 336 | 20 | 13 | 576 | 67 | 581 | 2.13e-41 | 161 |
MS.gene031761.t1 | AT3G55400 | 27.400 | 500 | 282 | 17 | 13 | 494 | 67 | 503 | 2.69e-37 | 147 |
MS.gene031761.t1 | AT3G59980 | 46.154 | 169 | 83 | 2 | 644 | 805 | 105 | 272 | 4.18e-36 | 138 |
MS.gene031761.t1 | AT5G02680 | 83.333 | 36 | 6 | 0 | 382 | 417 | 54 | 89 | 3.46e-11 | 62.0 |
Find 197 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTGGAGTTGTTTCAGTTTA+TGG | 0.110658 | 4.3:+31210762 | MS.gene031761:CDS |
AATATAAGCTTTGATGAATT+TGG | 0.147482 | 4.3:+31209049 | MS.gene031761:CDS |
AACAAATTCATGGTTCAAAA+TGG | 0.185409 | 4.3:+31210490 | MS.gene031761:CDS |
GTCTCCCAAACTTTCTTCTT+TGG | 0.208381 | 4.3:-31218703 | None:intergenic |
TTGCTCGATATTGTCGTCTT+AGG | 0.215733 | 4.3:+31207953 | MS.gene031761:CDS |
AGTAAAGGCGTCGGGGTATT+TGG | 0.251715 | 4.3:+31214230 | MS.gene031761:CDS |
TTGAAGAAAACTAAAGTTTC+AGG | 0.254594 | 4.3:+31216777 | MS.gene031761:CDS |
ATTTCTTGAGCTCCCTCTTT+TGG | 0.255185 | 4.3:+31210397 | MS.gene031761:CDS |
AGCCTTGTGATGGTAATTTC+TGG | 0.259177 | 4.3:-31217594 | None:intergenic |
GTACATGCTGGTCATAAAAT+TGG | 0.261053 | 4.3:+31216537 | MS.gene031761:CDS |
TGCTCGATATTGTCGTCTTA+GGG | 0.267863 | 4.3:+31207954 | MS.gene031761:CDS |
TACTTGGAACTGGTCAAAAT+TGG | 0.283900 | 4.3:+31213617 | MS.gene031761:CDS |
TTCTCCAACAAGAGCAGAAC+TGG | 0.292326 | 4.3:-31218632 | None:intergenic |
GTGGAGTTGTTTCAGTTTAT+GGG | 0.293016 | 4.3:+31210763 | MS.gene031761:CDS |
CAACAAAGTTGCTGCATATA+TGG | 0.295135 | 4.3:+31214868 | MS.gene031761:CDS |
TGAATCCAAAGAAGAAAGTT+TGG | 0.297006 | 4.3:+31218698 | MS.gene031761:CDS |
ATACTTGTCACAAATCTCTT+TGG | 0.301274 | 4.3:-31208058 | None:intergenic |
CTTTCACTTTCTGATGATAA+AGG | 0.302687 | 4.3:+31216480 | MS.gene031761:CDS |
AGACTGAAAGATGGCATAAA+AGG | 0.304480 | 4.3:-31216047 | None:intergenic |
GTATCTTCTTGCTTGTTTGT+TGG | 0.305613 | 4.3:+31216022 | MS.gene031761:CDS |
ACAAACCTGCTTCATAATTC+AGG | 0.308191 | 4.3:-31213672 | None:intergenic |
CATATATGCAGCAACTTTGT+TGG | 0.315455 | 4.3:-31214867 | None:intergenic |
TCATACTCACACCCTGGAAT+TGG | 0.326808 | 4.3:-31209386 | None:intergenic |
TGCTTCATAATTCAGGTATT+CGG | 0.336714 | 4.3:-31213665 | None:intergenic |
TTGATGCCCCTCATGGTTGC+TGG | 0.337669 | 4.3:-31217894 | None:intergenic |
TTTGGATTCAAGAGTTCATC+TGG | 0.338301 | 4.3:-31218685 | None:intergenic |
GAGGGTACCTGCCCAATTCC+AGG | 0.340471 | 4.3:+31209374 | MS.gene031761:CDS |
CTAATATTCCGGTTGAAGTA+TGG | 0.343710 | 4.3:+31214270 | MS.gene031761:CDS |
ATCTGCGGTACCGATGAGTA+TGG | 0.345827 | 4.3:+31207994 | MS.gene031761:CDS |
CCGCCCAGTTCTGCTCTTGT+TGG | 0.347348 | 4.3:+31218628 | MS.gene031761:CDS |
ATGAAGAAGTAGAAGTCTTC+AGG | 0.354632 | 4.3:+31216679 | MS.gene031761:CDS |
GATATTACTTGCTAACAAAT+AGG | 0.360848 | 4.3:+31214294 | MS.gene031761:CDS |
AAAATTGCAATGAGCATATC+TGG | 0.367625 | 4.3:+31215790 | MS.gene031761:CDS |
TGGCACACTTCAGTTTGCTC+AGG | 0.367664 | 4.3:-31209085 | None:intergenic |
CTTTGTAGGAAACTGAGTTT+TGG | 0.372999 | 4.3:+31215937 | MS.gene031761:intron |
TCAATTCTGTCGGATTTAGA+AGG | 0.374112 | 4.3:-31209445 | None:intergenic |
TGCAACTTATCTTCCAAAAG+AGG | 0.374210 | 4.3:-31210410 | None:intergenic |
TACTTGTCACAAATCTCTTT+GGG | 0.375574 | 4.3:-31208057 | None:intergenic |
TGAAACAACTCCACATTCTC+AGG | 0.383989 | 4.3:-31210754 | None:intergenic |
ATTGGAAGGTGTTCTATGTT+TGG | 0.384669 | 4.3:+31210659 | MS.gene031761:intron |
GAACACCAAAGCCATTGTTC+AGG | 0.386114 | 4.3:+31216559 | MS.gene031761:CDS |
GCTAAACCAACCTGCAGGTT+TGG | 0.387299 | 4.3:-31214529 | None:intergenic |
TGCAAAAGATACTAATATTC+CGG | 0.387319 | 4.3:+31214259 | MS.gene031761:CDS |
CTATTCAAACAACAAATTCA+TGG | 0.387890 | 4.3:+31210480 | MS.gene031761:CDS |
ACGTTGCGCTTTCCTTCAAC+TGG | 0.403684 | 4.3:-31207717 | None:intergenic |
CCTCATCTCGGCAACATCAT+TGG | 0.412465 | 4.3:+31207777 | MS.gene031761:CDS |
TGAGGGGAATGCATATTTGC+AGG | 0.426344 | 4.3:+31215813 | MS.gene031761:CDS |
GAATCCAAAGAAGAAAGTTT+GGG | 0.428068 | 4.3:+31218699 | MS.gene031761:CDS |
CCAGTTCCAAGTAGAGTAGA+TGG | 0.428164 | 4.3:-31213607 | None:intergenic |
ACAAATTCATGGTTCAAAAT+GGG | 0.429611 | 4.3:+31210491 | MS.gene031761:CDS |
TAATATCTCCATACTTCAAC+CGG | 0.433672 | 4.3:-31214278 | None:intergenic |
CATACTCACACCCTGGAATT+GGG | 0.434348 | 4.3:-31209385 | None:intergenic |
CGGCAGGCTACACACGTGAT+TGG | 0.435417 | 4.3:+31210713 | MS.gene031761:CDS |
CCATCTACTCTACTTGGAAC+TGG | 0.441914 | 4.3:+31213607 | MS.gene031761:CDS |
TTTCGAAGAGTAAAGGCGTC+GGG | 0.442818 | 4.3:+31214222 | MS.gene031761:CDS |
TACCGAGCTTCTGAATAACT+TGG | 0.443002 | 4.3:+31214473 | MS.gene031761:CDS |
TGGAGAAAGAATCACATTCC+CGG | 0.448358 | 4.3:+31218648 | MS.gene031761:CDS |
TAACAAGGGAGCAGAGAGAT+TGG | 0.452678 | 4.3:-31215977 | None:intergenic |
AGCTCCCTGAACAATGGCTT+TGG | 0.453002 | 4.3:-31216564 | None:intergenic |
ATGTTTCCATCTACTCTACT+TGG | 0.469018 | 4.3:+31213601 | MS.gene031761:CDS |
GTTGTTTCAGTTTATGGGAA+AGG | 0.471613 | 4.3:+31210768 | MS.gene031761:CDS |
TTGAAGGAAGTCAAGCTGAC+AGG | 0.471653 | 4.3:+31216709 | MS.gene031761:CDS |
AGCAGCAAGAACCATTGCTT+GGG | 0.478236 | 4.3:-31217919 | None:intergenic |
AAAGCCATTGTTCAGGGAGC+TGG | 0.479693 | 4.3:+31216566 | MS.gene031761:CDS |
TCCCAAGTTATTCAGAAGCT+CGG | 0.482067 | 4.3:-31214475 | None:intergenic |
ACACACGTGATTGGGAGAAA+TGG | 0.483792 | 4.3:+31210722 | MS.gene031761:CDS |
TGAGGAACGTTGTTGACATA+GGG | 0.485004 | 4.3:-31207759 | None:intergenic |
GGCAGGCTACACACGTGATT+GGG | 0.487493 | 4.3:+31210714 | MS.gene031761:CDS |
CCGTATCGTCCCATTGCCTA+TGG | 0.487513 | 4.3:-31218818 | None:intergenic |
ATGAGGAACGTTGTTGACAT+AGG | 0.488800 | 4.3:-31207760 | None:intergenic |
ATCAGGAACAGTGGGAATGA+TGG | 0.489341 | 4.3:-31214804 | None:intergenic |
GGCACACTTCAGTTTGCTCA+GGG | 0.495259 | 4.3:-31209084 | None:intergenic |
ACATACAGTGAATCTGCATC+AGG | 0.495378 | 4.3:-31217657 | None:intergenic |
AGATGTCTGTGGTGGGATCA+TGG | 0.497749 | 4.3:+31210447 | MS.gene031761:CDS |
AACACCAAAGCCATTGTTCA+GGG | 0.498027 | 4.3:+31216560 | MS.gene031761:CDS |
GCGGCGAAGCTTCCAGTTGA+AGG | 0.498498 | 4.3:+31207705 | MS.gene031761:CDS |
TTGGGAATCTTCAATTCTGT+CGG | 0.499554 | 4.3:-31209455 | None:intergenic |
AAGCAGCAAGAACCATTGCT+TGG | 0.500918 | 4.3:-31217920 | None:intergenic |
ATCACATTCCCGGGGTATGA+AGG | 0.502161 | 4.3:+31218658 | MS.gene031761:CDS |
GGAGAAAGAATCACATTCCC+GGG | 0.504503 | 4.3:+31218649 | MS.gene031761:CDS |
TACCATGGTGTGATCAGCAT+TGG | 0.507261 | 4.3:-31217943 | None:intergenic |
TATGCCATCTTTCAGTCTTG+AGG | 0.507830 | 4.3:+31216052 | MS.gene031761:CDS |
ATTCCACTGACCACATTAGC+TGG | 0.509637 | 4.3:+31218778 | MS.gene031761:CDS |
GGAGCAATACATAGAGTCAA+TGG | 0.511638 | 4.3:+31214889 | MS.gene031761:CDS |
TTGGGATTTGATGCCCCTCA+TGG | 0.513052 | 4.3:-31217901 | None:intergenic |
GGAGTTTACTACCTTGCACT+TGG | 0.515669 | 4.3:-31209474 | None:intergenic |
CACATTAGCTGGCATTTGCA+CGG | 0.515722 | 4.3:+31218789 | MS.gene031761:CDS |
GCAACTTATCTTCCAAAAGA+GGG | 0.517389 | 4.3:-31210409 | None:intergenic |
GTCTTCAGGAAGAAGTTTGA+AGG | 0.518322 | 4.3:+31216693 | MS.gene031761:CDS |
ACCAGCATGTACGAGATCCC+AGG | 0.520361 | 4.3:-31216526 | None:intergenic |
CGGTTCCATCCATAGGCAAT+GGG | 0.521640 | 4.3:+31218809 | MS.gene031761:CDS |
ATTTGCACGGTTCCATCCAT+AGG | 0.521790 | 4.3:+31218802 | MS.gene031761:CDS |
CTTGTTATGAAAACTGCTGC+CGG | 0.522580 | 4.3:+31215993 | MS.gene031761:CDS |
TCTGGATTGCCTTCATACCC+CGG | 0.527809 | 4.3:-31218667 | None:intergenic |
TGTGCACCTTTAGGTTGAGT+TGG | 0.528372 | 4.3:+31218600 | MS.gene031761:intron |
CCCTGGGATCTCGTACATGC+TGG | 0.531812 | 4.3:+31216525 | MS.gene031761:CDS |
GTTTGGTTTGATGCTCCGAT+TGG | 0.534698 | 4.3:+31210676 | MS.gene031761:CDS |
ACAAGGCTTGATATTCGAGT+TGG | 0.537666 | 4.3:+31217609 | MS.gene031761:CDS |
TTGTTATGAAAACTGCTGCC+GGG | 0.539229 | 4.3:+31215994 | MS.gene031761:CDS |
CTTAGCCGATCGACTTGTGG+AGG | 0.539801 | 4.3:+31209355 | MS.gene031761:CDS |
GTCAACAACGTTCCTCATCT+CGG | 0.540137 | 4.3:+31207765 | MS.gene031761:CDS |
GAGTCGCCACTTACATCATC+AGG | 0.542575 | 4.3:-31214821 | None:intergenic |
CGTGCAAATGCCAGCTAATG+TGG | 0.543978 | 4.3:-31218788 | None:intergenic |
GTTCTTAGCCGATCGACTTG+TGG | 0.546717 | 4.3:+31209352 | MS.gene031761:CDS |
TATACCACTTGATGAAATGC+AGG | 0.546913 | 4.3:+31217740 | MS.gene031761:CDS |
TAGTCCTCGTATTTGTGATA+CGG | 0.547604 | 4.3:+31210367 | MS.gene031761:CDS |
ATCGTCCCATTGCCTATGGA+TGG | 0.550835 | 4.3:-31218814 | None:intergenic |
CTCTGAGGACACATTACAGC+AGG | 0.552010 | 4.3:+31209144 | MS.gene031761:CDS |
TGAAGGAAGTCAAGCTGACA+GGG | 0.554340 | 4.3:+31216710 | MS.gene031761:CDS |
GTGATTGATATATATCCAAT+CGG | 0.554368 | 4.3:-31210691 | None:intergenic |
TCGAATATCAAGCCTTGTGA+TGG | 0.555943 | 4.3:-31217604 | None:intergenic |
TCGAGTTGGTCTCATAAAGA+AGG | 0.557778 | 4.3:+31217623 | MS.gene031761:CDS |
TGCAACGGAGACTAAAGCAT+TGG | 0.558923 | 4.3:+31208020 | MS.gene031761:CDS |
TTTACTGCGATACATGCAAA+AGG | 0.559169 | 4.3:+31209330 | MS.gene031761:CDS |
GTTCTCACACTGATCCCCTC+TGG | 0.559234 | 4.3:-31209414 | None:intergenic |
AGGGGAGCGCGCTGGTGATG+AGG | 0.561415 | 4.3:-31207740 | None:intergenic |
CCAATGATGTTGCCGAGATG+AGG | 0.561565 | 4.3:-31207777 | None:intergenic |
TCACCAAAATGACGGAAGAT+CGG | 0.561855 | 4.3:+31207679 | None:intergenic |
CCATAGGCAATGGGACGATA+CGG | 0.562052 | 4.3:+31218818 | MS.gene031761:CDS |
ACCGAGCTTCTGAATAACTT+GGG | 0.563182 | 4.3:+31214474 | MS.gene031761:CDS |
CTGGATTGCCTTCATACCCC+GGG | 0.563744 | 4.3:-31218666 | None:intergenic |
ACGGTTCCATCCATAGGCAA+TGG | 0.563965 | 4.3:+31218808 | MS.gene031761:CDS |
CTCACACCCTGGAATTGGGC+AGG | 0.569388 | 4.3:-31209381 | None:intergenic |
AGGGTACCTGCCCAATTCCA+GGG | 0.570926 | 4.3:+31209375 | MS.gene031761:CDS |
GAATACCTGAATTATGAAGC+AGG | 0.576361 | 4.3:+31213667 | MS.gene031761:CDS |
TGACAGGGTTGTTCGTGCAG+AGG | 0.576831 | 4.3:+31216725 | MS.gene031761:CDS |
GAAACAACTCCACATTCTCA+GGG | 0.577888 | 4.3:-31210753 | None:intergenic |
GGATATATATCAATCACGGC+AGG | 0.586570 | 4.3:+31210697 | MS.gene031761:CDS |
ATACATAGAGTCAATGGAGA+AGG | 0.586721 | 4.3:+31214895 | MS.gene031761:CDS |
TGCAATGAGCATATCTGGTG+AGG | 0.586994 | 4.3:+31215795 | MS.gene031761:CDS |
GCAATGAGCATATCTGGTGA+GGG | 0.587736 | 4.3:+31215796 | MS.gene031761:CDS |
GCAGCAAAAGCATCATCAAG+TGG | 0.587775 | 4.3:+31217546 | MS.gene031761:CDS |
CGTTGCAGTCCCATACTCAT+CGG | 0.590342 | 4.3:-31208004 | None:intergenic |
GCATTACCAGAGATCTGAAG+TGG | 0.591467 | 4.3:+31210528 | MS.gene031761:CDS |
CACGTGATTGGGAGAAATGG+TGG | 0.593366 | 4.3:+31210725 | MS.gene031761:CDS |
GTGAGTATGATTCTGCCAGA+GGG | 0.593875 | 4.3:+31209399 | MS.gene031761:CDS |
ATTACCTCAAGACTGAAAGA+TGG | 0.597613 | 4.3:-31216056 | None:intergenic |
TGGCAATAAAACTCAAAACT+CGG | 0.598920 | 4.3:-31214509 | None:intergenic |
GGTACCCTCCACAAGTCGAT+CGG | 0.599711 | 4.3:-31209360 | None:intergenic |
GCTCGATATTGTCGTCTTAG+GGG | 0.599763 | 4.3:+31207955 | MS.gene031761:CDS |
TTCACAAGGAGGTCTACGAT+TGG | 0.599884 | 4.3:+31209023 | MS.gene031761:CDS |
TCTCCAACAAGAGCAGAACT+GGG | 0.601244 | 4.3:-31218631 | None:intergenic |
AGCAAGAAGATACACAATCC+CGG | 0.602614 | 4.3:-31216012 | None:intergenic |
GAGGGAGCTCAAGAAATAAG+TGG | 0.603079 | 4.3:-31210391 | None:intergenic |
GTAAAGGTTAAACTAAAGCA+AGG | 0.605462 | 4.3:+31215763 | MS.gene031761:intron |
CAGACCTGCATTTCATCAAG+TGG | 0.609205 | 4.3:-31217744 | None:intergenic |
ACTGTTCCTGATGATGTAAG+TGG | 0.610282 | 4.3:+31214815 | MS.gene031761:CDS |
CGAAAATAATTGGCTCTCTG+AGG | 0.610435 | 4.3:+31209129 | MS.gene031761:CDS |
TCTGCGGTACCGATGAGTAT+GGG | 0.610606 | 4.3:+31207995 | MS.gene031761:CDS |
GATTGGATATATATCAATCA+CGG | 0.614894 | 4.3:+31210693 | MS.gene031761:CDS |
ATTGAAGATTCCCAAGTGCA+AGG | 0.615621 | 4.3:+31209463 | MS.gene031761:CDS |
CAAGCAACTAAATTTGTCTG+TGG | 0.621913 | 4.3:+31216449 | MS.gene031761:CDS |
TAATGACTTACAGTATGGAA+TGG | 0.623528 | 4.3:-31210799 | None:intergenic |
ATGCCAGCTAATGTGGTCAG+TGG | 0.623670 | 4.3:-31218781 | None:intergenic |
ACCTAAAACCAGCAACCATG+AGG | 0.626255 | 4.3:+31217886 | MS.gene031761:CDS |
CTTACATCATCAGGAACAGT+GGG | 0.627035 | 4.3:-31214812 | None:intergenic |
GAGTTTACTACCTTGCACTT+GGG | 0.627712 | 4.3:-31209473 | None:intergenic |
GGGCATCAAATCCCAAGCAA+TGG | 0.628535 | 4.3:+31217908 | MS.gene031761:CDS |
CCTAAAACCAGCAACCATGA+GGG | 0.630105 | 4.3:+31217887 | MS.gene031761:CDS |
CCAGCATGTACGAGATCCCA+GGG | 0.631217 | 4.3:-31216525 | None:intergenic |
CATACCAGCTCCCTGAACAA+TGG | 0.632892 | 4.3:-31216570 | None:intergenic |
TTAGCCGATCGACTTGTGGA+GGG | 0.636760 | 4.3:+31209356 | MS.gene031761:CDS |
CATCAATGAGATGTCTGTGG+TGG | 0.637086 | 4.3:+31210439 | MS.gene031761:CDS |
CAGACAAGAACCGTTGTCAG+TGG | 0.638105 | 4.3:+31217705 | MS.gene031761:CDS |
TACAATGCGATTTACATCTG+CGG | 0.638497 | 4.3:+31207979 | MS.gene031761:CDS |
TTACCAGAGATCTGAAGTGG+GGG | 0.638758 | 4.3:+31210531 | MS.gene031761:CDS |
CATTACCAGAGATCTGAAGT+GGG | 0.638794 | 4.3:+31210529 | MS.gene031761:CDS |
TAGATACCATGCTATTCACA+AGG | 0.643601 | 4.3:+31209009 | MS.gene031761:intron |
AGACCTCCTTGTGAATAGCA+TGG | 0.644341 | 4.3:-31209015 | None:intergenic |
ACGATCAGGTGTGTTGAGTG+CGG | 0.645416 | 4.3:+31207924 | MS.gene031761:intron |
CTTGACAAGTCCACTGACAA+CGG | 0.645824 | 4.3:-31217715 | None:intergenic |
GCAGAATCATACTCACACCC+TGG | 0.653453 | 4.3:-31209392 | None:intergenic |
TGTGAGTATGATTCTGCCAG+AGG | 0.653951 | 4.3:+31209398 | MS.gene031761:CDS |
CTAAAACCAGCAACCATGAG+GGG | 0.655884 | 4.3:+31217888 | MS.gene031761:CDS |
ATCAATGAGATGTCTGTGGT+GGG | 0.655945 | 4.3:+31210440 | MS.gene031761:CDS |
GTTGACATAGGGGAGCGCGC+TGG | 0.656208 | 4.3:-31207748 | None:intergenic |
CGATGAGTATGGGACTGCAA+CGG | 0.660790 | 4.3:+31208005 | MS.gene031761:CDS |
CAATGAGCATATCTGGTGAG+GGG | 0.667194 | 4.3:+31215797 | MS.gene031761:CDS |
AACCAGAAATTACCATCACA+AGG | 0.669041 | 4.3:+31217592 | MS.gene031761:CDS |
CTTGCTAACAAATAGGCCTG+AGG | 0.671819 | 4.3:+31214301 | MS.gene031761:CDS |
ACTTACATCATCAGGAACAG+TGG | 0.673842 | 4.3:-31214813 | None:intergenic |
TTCGAAGAGTAAAGGCGTCG+GGG | 0.678180 | 4.3:+31214223 | MS.gene031761:CDS |
GAGGAACGTTGTTGACATAG+GGG | 0.678351 | 4.3:-31207758 | None:intergenic |
ATTACCAGAGATCTGAAGTG+GGG | 0.685797 | 4.3:+31210530 | MS.gene031761:CDS |
GGGGATCAGTGTGAGAACTG+TGG | 0.689601 | 4.3:+31209419 | MS.gene031761:CDS |
TATGTTGAAGAGATTGATGT+CGG | 0.692037 | 4.3:+31217675 | MS.gene031761:CDS |
TACCAGAGATCTGAAGTGGG+GGG | 0.699203 | 4.3:+31210532 | MS.gene031761:CDS |
GCACACTTCAGTTTGCTCAG+GGG | 0.701199 | 4.3:-31209083 | None:intergenic |
TTCCAATGCTGATCACACCA+TGG | 0.701218 | 4.3:+31217941 | MS.gene031761:CDS |
TGAGTATGATTCTGCCAGAG+GGG | 0.701606 | 4.3:+31209400 | MS.gene031761:CDS |
AATGACGGAAGATCGGAAAG+CGG | 0.710033 | 4.3:+31207686 | None:intergenic |
GCACACGAATGAGAAGCTAG+AGG | 0.715856 | 4.3:+31218741 | MS.gene031761:CDS |
GAGAAAGAATCACATTCCCG+GGG | 0.722304 | 4.3:+31218650 | MS.gene031761:CDS |
ATACATCAATGAGATGTCTG+TGG | 0.725592 | 4.3:+31210436 | MS.gene031761:CDS |
ATACCATGCTATTCACAAGG+AGG | 0.735757 | 4.3:+31209012 | MS.gene031761:CDS |
CCAACAAGAGCAGAACTGGG+CGG | 0.760494 | 4.3:-31218628 | None:intergenic |
TGGTCCGTATCACAAATACG+AGG | 0.816438 | 4.3:-31210371 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 31207687 | 31218843 | 31207687 | ID=MS.gene031761 |
chr4.3 | mRNA | 31207687 | 31218843 | 31207687 | ID=MS.gene031761.t1;Parent=MS.gene031761 |
chr4.3 | exon | 31207687 | 31207801 | 31207687 | ID=MS.gene031761.t1.exon1;Parent=MS.gene031761.t1 |
chr4.3 | CDS | 31207687 | 31207801 | 31207687 | ID=cds.MS.gene031761.t1;Parent=MS.gene031761.t1 |
chr4.3 | exon | 31207932 | 31208076 | 31207932 | ID=MS.gene031761.t1.exon2;Parent=MS.gene031761.t1 |
chr4.3 | CDS | 31207932 | 31208076 | 31207932 | ID=cds.MS.gene031761.t1;Parent=MS.gene031761.t1 |
chr4.3 | exon | 31209012 | 31209165 | 31209012 | ID=MS.gene031761.t1.exon3;Parent=MS.gene031761.t1 |
chr4.3 | CDS | 31209012 | 31209165 | 31209012 | ID=cds.MS.gene031761.t1;Parent=MS.gene031761.t1 |
chr4.3 | exon | 31209329 | 31209484 | 31209329 | ID=MS.gene031761.t1.exon4;Parent=MS.gene031761.t1 |
chr4.3 | CDS | 31209329 | 31209484 | 31209329 | ID=cds.MS.gene031761.t1;Parent=MS.gene031761.t1 |
chr4.3 | exon | 31210356 | 31210586 | 31210356 | ID=MS.gene031761.t1.exon5;Parent=MS.gene031761.t1 |
chr4.3 | CDS | 31210356 | 31210586 | 31210356 | ID=cds.MS.gene031761.t1;Parent=MS.gene031761.t1 |
chr4.3 | exon | 31210667 | 31210810 | 31210667 | ID=MS.gene031761.t1.exon6;Parent=MS.gene031761.t1 |
chr4.3 | CDS | 31210667 | 31210810 | 31210667 | ID=cds.MS.gene031761.t1;Parent=MS.gene031761.t1 |
chr4.3 | exon | 31213598 | 31213688 | 31213598 | ID=MS.gene031761.t1.exon7;Parent=MS.gene031761.t1 |
chr4.3 | CDS | 31213598 | 31213688 | 31213598 | ID=cds.MS.gene031761.t1;Parent=MS.gene031761.t1 |
chr4.3 | exon | 31214216 | 31214322 | 31214216 | ID=MS.gene031761.t1.exon8;Parent=MS.gene031761.t1 |
chr4.3 | CDS | 31214216 | 31214322 | 31214216 | ID=cds.MS.gene031761.t1;Parent=MS.gene031761.t1 |
chr4.3 | exon | 31214426 | 31214540 | 31214426 | ID=MS.gene031761.t1.exon9;Parent=MS.gene031761.t1 |
chr4.3 | CDS | 31214426 | 31214540 | 31214426 | ID=cds.MS.gene031761.t1;Parent=MS.gene031761.t1 |
chr4.3 | exon | 31214789 | 31214916 | 31214789 | ID=MS.gene031761.t1.exon10;Parent=MS.gene031761.t1 |
chr4.3 | CDS | 31214789 | 31214916 | 31214789 | ID=cds.MS.gene031761.t1;Parent=MS.gene031761.t1 |
chr4.3 | exon | 31215769 | 31215834 | 31215769 | ID=MS.gene031761.t1.exon11;Parent=MS.gene031761.t1 |
chr4.3 | CDS | 31215769 | 31215834 | 31215769 | ID=cds.MS.gene031761.t1;Parent=MS.gene031761.t1 |
chr4.3 | exon | 31215945 | 31216073 | 31215945 | ID=MS.gene031761.t1.exon12;Parent=MS.gene031761.t1 |
chr4.3 | CDS | 31215945 | 31216073 | 31215945 | ID=cds.MS.gene031761.t1;Parent=MS.gene031761.t1 |
chr4.3 | exon | 31216444 | 31216587 | 31216444 | ID=MS.gene031761.t1.exon13;Parent=MS.gene031761.t1 |
chr4.3 | CDS | 31216444 | 31216587 | 31216444 | ID=cds.MS.gene031761.t1;Parent=MS.gene031761.t1 |
chr4.3 | exon | 31216675 | 31216798 | 31216675 | ID=MS.gene031761.t1.exon14;Parent=MS.gene031761.t1 |
chr4.3 | CDS | 31216675 | 31216798 | 31216675 | ID=cds.MS.gene031761.t1;Parent=MS.gene031761.t1 |
chr4.3 | exon | 31217523 | 31217761 | 31217523 | ID=MS.gene031761.t1.exon15;Parent=MS.gene031761.t1 |
chr4.3 | CDS | 31217523 | 31217761 | 31217523 | ID=cds.MS.gene031761.t1;Parent=MS.gene031761.t1 |
chr4.3 | exon | 31217861 | 31217962 | 31217861 | ID=MS.gene031761.t1.exon16;Parent=MS.gene031761.t1 |
chr4.3 | CDS | 31217861 | 31217962 | 31217861 | ID=cds.MS.gene031761.t1;Parent=MS.gene031761.t1 |
chr4.3 | exon | 31218613 | 31218843 | 31218613 | ID=MS.gene031761.t1.exon17;Parent=MS.gene031761.t1 |
chr4.3 | CDS | 31218613 | 31218843 | 31218613 | ID=cds.MS.gene031761.t1;Parent=MS.gene031761.t1 |
Gene Sequence |
Protein sequence |