Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052373.t1 | XP_003607408.1 | 99 | 806 | 8 | 0 | 1 | 806 | 1 | 806 | 0.00E+00 | 1636.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052373.t1 | Q9ZTS1 | 75.5 | 800 | 189 | 3 | 8 | 806 | 8 | 801 | 0.0e+00 | 1275.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052373.t1 | G7JSP8 | 99.0 | 806 | 8 | 0 | 1 | 806 | 1 | 806 | 0.0e+00 | 1636.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052373 | MS.gene065875 | 0.844031 | 9.72E-59 | -1.69E-46 |
| MS.gene052373 | MS.gene32742 | 0.808 | 3.84E-50 | -1.69E-46 |
| MS.gene052373 | MS.gene74235 | 0.801384 | 9.24E-49 | -1.69E-46 |
| MS.gene052373 | MS.gene90778 | 0.803706 | 3.07E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052373.t1 | MTR_4g077700 | 99.007 | 806 | 8 | 0 | 1 | 806 | 1 | 806 | 0.0 | 1664 |
| MS.gene052373.t1 | MTR_4g122580 | 82.382 | 806 | 135 | 3 | 1 | 806 | 1 | 799 | 0.0 | 1369 |
| MS.gene052373.t1 | MTR_1g115295 | 26.974 | 608 | 350 | 22 | 19 | 598 | 59 | 600 | 3.92e-48 | 181 |
| MS.gene052373.t1 | MTR_3g093870 | 41.057 | 246 | 127 | 3 | 578 | 806 | 144 | 388 | 1.30e-44 | 166 |
| MS.gene052373.t1 | MTR_4g040350 | 47.619 | 168 | 74 | 2 | 648 | 805 | 93 | 256 | 2.43e-37 | 141 |
| MS.gene052373.t1 | MTR_4g122620 | 42.945 | 163 | 49 | 6 | 117 | 267 | 13 | 143 | 1.29e-28 | 114 |
| MS.gene052373.t1 | MTR_4g122620 | 64.615 | 65 | 11 | 1 | 349 | 413 | 142 | 194 | 2.77e-15 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052373.t1 | AT4G13780 | 74.349 | 807 | 196 | 6 | 1 | 806 | 1 | 797 | 0.0 | 1254 |
| MS.gene052373.t1 | AT2G40660 | 50.000 | 164 | 81 | 1 | 643 | 806 | 227 | 389 | 2.37e-43 | 162 |
| MS.gene052373.t1 | AT3G55400 | 26.576 | 587 | 336 | 20 | 13 | 576 | 67 | 581 | 1.91e-41 | 161 |
| MS.gene052373.t1 | AT3G55400 | 27.400 | 500 | 282 | 17 | 13 | 494 | 67 | 503 | 2.19e-37 | 148 |
| MS.gene052373.t1 | AT3G59980 | 46.746 | 169 | 82 | 2 | 644 | 805 | 105 | 272 | 3.71e-37 | 141 |
| MS.gene052373.t1 | AT5G02680 | 83.333 | 36 | 6 | 0 | 382 | 417 | 54 | 89 | 3.46e-11 | 62.0 |
Find 197 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGAGTTGTTTCAGTTTA+TGG | 0.110658 | 4.4:+33168244 | MS.gene052373:CDS |
| AATATAAGCTTTGATGAATT+TGG | 0.147482 | 4.4:+33166499 | MS.gene052373:CDS |
| AACAAATTCATGGTTCAAAA+TGG | 0.185409 | 4.4:+33167972 | MS.gene052373:CDS |
| GTCTCCCAAACTTTCTTCTT+TGG | 0.208381 | 4.4:-33175659 | None:intergenic |
| TTGCTCGATATTGTCGTCTT+AGG | 0.215733 | 4.4:+33165395 | MS.gene052373:CDS |
| AGTAAAGGCGTCGGGGTATT+TGG | 0.251715 | 4.4:+33171201 | MS.gene052373:CDS |
| TTGAAGAAAACTAAAGTTTC+AGG | 0.254594 | 4.4:+33173720 | MS.gene052373:CDS |
| ATTTCTTGAGCTCCCTCTTT+TGG | 0.255185 | 4.4:+33167879 | MS.gene052373:CDS |
| AGCCTTGTGATGGTAATTTC+TGG | 0.259177 | 4.4:-33174544 | None:intergenic |
| TGCTCGATATTGTCGTCTTA+GGG | 0.267863 | 4.4:+33165396 | MS.gene052373:CDS |
| GTAAGTGCCGGTCATAAAAT+TGG | 0.269958 | 4.4:+33173480 | MS.gene052373:CDS |
| TACTTGGAACTGGTCAAAAT+TGG | 0.283900 | 4.4:+33170514 | MS.gene052373:CDS |
| TTCTCCAACAAGAGCAGAAC+TGG | 0.292326 | 4.4:-33175588 | None:intergenic |
| GTGGAGTTGTTTCAGTTTAT+GGG | 0.293016 | 4.4:+33168245 | MS.gene052373:CDS |
| CAACAAAGTTGCTGCATATA+TGG | 0.295135 | 4.4:+33171839 | MS.gene052373:CDS |
| TGAATCCAAAGAAGAAAGTT+TGG | 0.297006 | 4.4:+33175654 | MS.gene052373:CDS |
| ATACTTGTCACAAATCTCTT+TGG | 0.301274 | 4.4:-33165500 | None:intergenic |
| CTTTCACTTTCTGATGATAA+AGG | 0.302687 | 4.4:+33173423 | MS.gene052373:CDS |
| AGACTGAAAGATGGCATAAA+AGG | 0.304480 | 4.4:-33173014 | None:intergenic |
| GTATCTTCTTGCTTGTTTGT+TGG | 0.305613 | 4.4:+33172989 | MS.gene052373:CDS |
| ACTAACCTGCTTCATAATTC+AGG | 0.306018 | 4.4:-33170569 | None:intergenic |
| CATATATGCAGCAACTTTGT+TGG | 0.315455 | 4.4:-33171838 | None:intergenic |
| TCATACTCACACCCTGGAAT+TGG | 0.326808 | 4.4:-33166836 | None:intergenic |
| TGCTTCATAATTCAGGTATT+CGG | 0.336714 | 4.4:-33170562 | None:intergenic |
| TTGATGCCCCTCATGGTTGC+TGG | 0.337669 | 4.4:-33174844 | None:intergenic |
| TTTGGATTCAAGAGTTCATC+TGG | 0.338301 | 4.4:-33175641 | None:intergenic |
| GAGGGTACCTGCCCAATTCC+AGG | 0.340471 | 4.4:+33166824 | MS.gene052373:CDS |
| CTAATATTCCGGTTGAAGTA+TGG | 0.343710 | 4.4:+33171241 | MS.gene052373:CDS |
| ATCTGCGGTACCGATGAGTA+TGG | 0.345827 | 4.4:+33165436 | MS.gene052373:CDS |
| CCGCCCAGTTCTGCTCTTGT+TGG | 0.347348 | 4.4:+33175584 | MS.gene052373:CDS |
| ATGAAGAAGTAGAAGTCTTC+AGG | 0.354632 | 4.4:+33173622 | MS.gene052373:CDS |
| GATATTACTTGCTAACAAAT+AGG | 0.360848 | 4.4:+33171265 | MS.gene052373:CDS |
| AAAATTGCAATGAGCATATC+TGG | 0.367625 | 4.4:+33172760 | MS.gene052373:CDS |
| TGGCACACTTCAGTTTGCTC+AGG | 0.367664 | 4.4:-33166535 | None:intergenic |
| CTTTGTAGGAAACTGAGTTT+TGG | 0.372999 | 4.4:+33172904 | MS.gene052373:intron |
| TCAATTCTGTCGGATTTAGA+AGG | 0.374112 | 4.4:-33166895 | None:intergenic |
| TGCAACTTATCTTCCAAAAG+AGG | 0.374210 | 4.4:-33167892 | None:intergenic |
| TACTTGTCACAAATCTCTTT+GGG | 0.375574 | 4.4:-33165499 | None:intergenic |
| ATCAGGAACAGTGGGAATAA+TGG | 0.381536 | 4.4:-33171775 | None:intergenic |
| TGAAACAACTCCACATTCTC+AGG | 0.383989 | 4.4:-33168236 | None:intergenic |
| ATTGGAAGGTGTTCTATGTT+TGG | 0.384669 | 4.4:+33168141 | MS.gene052373:intron |
| GAACACCAAAGCCATTGTTC+AGG | 0.386114 | 4.4:+33173502 | MS.gene052373:CDS |
| GCTAAACCAACCTGCAGGTT+TGG | 0.387299 | 4.4:-33171500 | None:intergenic |
| TGCAAAAGATACTAATATTC+CGG | 0.387319 | 4.4:+33171230 | MS.gene052373:CDS |
| CTATTCAAACAACAAATTCA+TGG | 0.387890 | 4.4:+33167962 | MS.gene052373:CDS |
| CCTCATCTCGGCAACATCAT+TGG | 0.412465 | 4.4:+33165219 | MS.gene052373:CDS |
| GCGCCGAAGCTTCCCGTTGA+AGG | 0.417667 | 4.4:+33165147 | MS.gene052373:CDS |
| TGAGGGGAATGCATATTTGC+AGG | 0.426344 | 4.4:+33172783 | MS.gene052373:CDS |
| GAATCCAAAGAAGAAAGTTT+GGG | 0.428068 | 4.4:+33175655 | MS.gene052373:CDS |
| CCAGTTCCAAGTAGAGTAGA+TGG | 0.428164 | 4.4:-33170504 | None:intergenic |
| ACAAATTCATGGTTCAAAAT+GGG | 0.429611 | 4.4:+33167973 | MS.gene052373:CDS |
| TAATATCTCCATACTTCAAC+CGG | 0.433672 | 4.4:-33171249 | None:intergenic |
| CATACTCACACCCTGGAATT+GGG | 0.434348 | 4.4:-33166835 | None:intergenic |
| CGGCAGGCTACACACGTGAT+TGG | 0.435417 | 4.4:+33168195 | MS.gene052373:CDS |
| TTTCCTTCAACGGGAAGCTT+CGG | 0.440888 | 4.4:-33165150 | None:intergenic |
| CCATCTACTCTACTTGGAAC+TGG | 0.441914 | 4.4:+33170504 | MS.gene052373:CDS |
| TTTCGAAGAGTAAAGGCGTC+GGG | 0.442818 | 4.4:+33171193 | MS.gene052373:CDS |
| TACCGAGCTTCTGAATAACT+TGG | 0.443002 | 4.4:+33171444 | MS.gene052373:CDS |
| TGGAGAAAGAATCACATTCC+CGG | 0.448358 | 4.4:+33175604 | MS.gene052373:CDS |
| TAACAAGGGAGCAGAGAGAT+TGG | 0.452678 | 4.4:-33172944 | None:intergenic |
| AGCTCCCTGAACAATGGCTT+TGG | 0.453002 | 4.4:-33173507 | None:intergenic |
| ATGTTTCCATCTACTCTACT+TGG | 0.469018 | 4.4:+33170498 | MS.gene052373:CDS |
| GTTGTTTCAGTTTATGGGAA+AGG | 0.471613 | 4.4:+33168250 | MS.gene052373:CDS |
| TTGAAGGAAGTCAAGCTGAC+AGG | 0.471653 | 4.4:+33173652 | MS.gene052373:CDS |
| AGCAGCAAGAACCATTGCTT+GGG | 0.478236 | 4.4:-33174869 | None:intergenic |
| AAAGCCATTGTTCAGGGAGC+TGG | 0.479693 | 4.4:+33173509 | MS.gene052373:CDS |
| TCCCAAGTTATTCAGAAGCT+CGG | 0.482067 | 4.4:-33171446 | None:intergenic |
| ACACACGTGATTGGGAGAAA+TGG | 0.483792 | 4.4:+33168204 | MS.gene052373:CDS |
| TGAGGAACGTTGTTGACATA+GGG | 0.485004 | 4.4:-33165201 | None:intergenic |
| GGCAGGCTACACACGTGATT+GGG | 0.487493 | 4.4:+33168196 | MS.gene052373:CDS |
| CCGTATCGTCCCATTGCCTA+TGG | 0.487513 | 4.4:-33175774 | None:intergenic |
| ATGAGGAACGTTGTTGACAT+AGG | 0.488800 | 4.4:-33165202 | None:intergenic |
| GGCACACTTCAGTTTGCTCA+GGG | 0.495259 | 4.4:-33166534 | None:intergenic |
| ACATACAGTGAATCTGCATC+AGG | 0.495378 | 4.4:-33174607 | None:intergenic |
| AGATGTCTGTGGTGGGATCA+TGG | 0.497749 | 4.4:+33167929 | MS.gene052373:CDS |
| AACACCAAAGCCATTGTTCA+GGG | 0.498027 | 4.4:+33173503 | MS.gene052373:CDS |
| TTGGGAATCTTCAATTCTGT+CGG | 0.499554 | 4.4:-33166905 | None:intergenic |
| AAGCAGCAAGAACCATTGCT+TGG | 0.500918 | 4.4:-33174870 | None:intergenic |
| ACGTTGCGCTTTCCTTCAAC+GGG | 0.501448 | 4.4:-33165159 | None:intergenic |
| ATCACATTCCCGGGGTATGA+AGG | 0.502161 | 4.4:+33175614 | MS.gene052373:CDS |
| GGAGAAAGAATCACATTCCC+GGG | 0.504503 | 4.4:+33175605 | MS.gene052373:CDS |
| TACCATGGTGTGATCAGCAT+TGG | 0.507261 | 4.4:-33174893 | None:intergenic |
| TATGCCATCTTTCAGTCTTG+AGG | 0.507830 | 4.4:+33173019 | MS.gene052373:CDS |
| GGAGCAATACATAGAGTCAA+TGG | 0.511638 | 4.4:+33171860 | MS.gene052373:CDS |
| TTGGGATTTGATGCCCCTCA+TGG | 0.513052 | 4.4:-33174851 | None:intergenic |
| GGAGTTTACTACCTTGCACT+TGG | 0.515669 | 4.4:-33166924 | None:intergenic |
| CCCTGGGATCTTGTAAGTGC+CGG | 0.516485 | 4.4:+33173468 | MS.gene052373:CDS |
| GCAACTTATCTTCCAAAAGA+GGG | 0.517389 | 4.4:-33167891 | None:intergenic |
| GTCTTCAGGAAGAAGTTTGA+AGG | 0.518322 | 4.4:+33173636 | MS.gene052373:CDS |
| CGGTTCCATCCATAGGCAAT+GGG | 0.521640 | 4.4:+33175765 | MS.gene052373:CDS |
| ATTTGCACGGTTCCATCCAT+AGG | 0.521790 | 4.4:+33175758 | MS.gene052373:CDS |
| CTTGTTATGAAAACTGCTGC+CGG | 0.522580 | 4.4:+33172960 | MS.gene052373:CDS |
| TATACCACTTGATGAAATGC+AGG | 0.523988 | 4.4:+33174690 | MS.gene052373:CDS |
| GACGTTGCGCTTTCCTTCAA+CGG | 0.527064 | 4.4:-33165160 | None:intergenic |
| TCTGGATTGCCTTCATACCC+CGG | 0.527809 | 4.4:-33175623 | None:intergenic |
| TGTGCACCTTTAGGTTGAGT+TGG | 0.528372 | 4.4:+33175556 | MS.gene052373:intron |
| GTTTGGTTTGATGCTCCGAT+TGG | 0.534698 | 4.4:+33168158 | MS.gene052373:CDS |
| CACATCAGCTGGCATTTGCA+CGG | 0.536466 | 4.4:+33175745 | MS.gene052373:CDS |
| ACAAGGCTTGATATTCGAGT+TGG | 0.537666 | 4.4:+33174559 | MS.gene052373:CDS |
| ATTCCACTGACCACATCAGC+TGG | 0.538255 | 4.4:+33175734 | MS.gene052373:CDS |
| TTGTTATGAAAACTGCTGCC+GGG | 0.539229 | 4.4:+33172961 | MS.gene052373:CDS |
| CTTAGCCGATCGACTTGTGG+AGG | 0.539801 | 4.4:+33166805 | MS.gene052373:CDS |
| GTCAACAACGTTCCTCATCT+CGG | 0.540137 | 4.4:+33165207 | MS.gene052373:CDS |
| GAGTCGCCACTTACATCATC+AGG | 0.542575 | 4.4:-33171792 | None:intergenic |
| ACCGGCACTTACAAGATCCC+AGG | 0.545961 | 4.4:-33173469 | None:intergenic |
| GTTCTTAGCCGATCGACTTG+TGG | 0.546717 | 4.4:+33166802 | MS.gene052373:CDS |
| TAGTCCTCGTATTTGTGATA+CGG | 0.547604 | 4.4:+33167849 | MS.gene052373:CDS |
| ATCGTCCCATTGCCTATGGA+TGG | 0.550835 | 4.4:-33175770 | None:intergenic |
| CTCTGAGGACACATTACAGC+AGG | 0.552010 | 4.4:+33166594 | MS.gene052373:CDS |
| TGAAGGAAGTCAAGCTGACA+GGG | 0.554340 | 4.4:+33173653 | MS.gene052373:CDS |
| GTGATTGATATATATCCAAT+CGG | 0.554368 | 4.4:-33168173 | None:intergenic |
| TCGAATATCAAGCCTTGTGA+TGG | 0.555943 | 4.4:-33174554 | None:intergenic |
| TCGAGTTGGTCTCATAAAGA+AGG | 0.557778 | 4.4:+33174573 | MS.gene052373:CDS |
| TGCAACGGAGACTAAAGCAT+TGG | 0.558923 | 4.4:+33165462 | MS.gene052373:CDS |
| TTTACTGCGATACATGCAAA+AGG | 0.559169 | 4.4:+33166780 | MS.gene052373:CDS |
| GTTCTCACACTGATCCCCTC+TGG | 0.559234 | 4.4:-33166864 | None:intergenic |
| CCAATGATGTTGCCGAGATG+AGG | 0.561565 | 4.4:-33165219 | None:intergenic |
| TCACCAAAATGACGGAAGAT+CGG | 0.561855 | 4.4:+33165121 | None:intergenic |
| CCATAGGCAATGGGACGATA+CGG | 0.562052 | 4.4:+33175774 | MS.gene052373:CDS |
| ACCGAGCTTCTGAATAACTT+GGG | 0.563182 | 4.4:+33171445 | MS.gene052373:CDS |
| CTGGATTGCCTTCATACCCC+GGG | 0.563744 | 4.4:-33175622 | None:intergenic |
| ACGGTTCCATCCATAGGCAA+TGG | 0.563965 | 4.4:+33175764 | MS.gene052373:CDS |
| CTCACACCCTGGAATTGGGC+AGG | 0.569388 | 4.4:-33166831 | None:intergenic |
| AGGGTACCTGCCCAATTCCA+GGG | 0.570926 | 4.4:+33166825 | MS.gene052373:CDS |
| CGTGCAAATGCCAGCTGATG+TGG | 0.574978 | 4.4:-33175744 | None:intergenic |
| TGACAGGGTTGTTCGTGCAG+AGG | 0.576831 | 4.4:+33173668 | MS.gene052373:CDS |
| GAAACAACTCCACATTCTCA+GGG | 0.577888 | 4.4:-33168235 | None:intergenic |
| GGATATATATCAATCACGGC+AGG | 0.586570 | 4.4:+33168179 | MS.gene052373:CDS |
| ATACATAGAGTCAATGGAGA+AGG | 0.586721 | 4.4:+33171866 | MS.gene052373:CDS |
| TGCAATGAGCATATCTGGTG+AGG | 0.586994 | 4.4:+33172765 | MS.gene052373:CDS |
| GCAATGAGCATATCTGGTGA+GGG | 0.587736 | 4.4:+33172766 | MS.gene052373:CDS |
| GCAGCAAAAGCATCATCAAG+TGG | 0.587775 | 4.4:+33174496 | MS.gene052373:CDS |
| CAAACCTGCATTTCATCAAG+TGG | 0.588160 | 4.4:-33174694 | None:intergenic |
| CGTTGCAGTCCCATACTCAT+CGG | 0.590342 | 4.4:-33165446 | None:intergenic |
| GCATTACCAGAGATCTGAAG+TGG | 0.591467 | 4.4:+33168010 | MS.gene052373:CDS |
| CACGTGATTGGGAGAAATGG+TGG | 0.593366 | 4.4:+33168207 | MS.gene052373:CDS |
| GTGAGTATGATTCTGCCAGA+GGG | 0.593875 | 4.4:+33166849 | MS.gene052373:CDS |
| GAATACCTGAATTATGAAGC+AGG | 0.594242 | 4.4:+33170564 | MS.gene052373:CDS |
| ATTACCTCAAGACTGAAAGA+TGG | 0.597613 | 4.4:-33173023 | None:intergenic |
| AGGGGAGAGCGCTAGTGATG+AGG | 0.598406 | 4.4:-33165182 | None:intergenic |
| TGGCAATAAAACTCAAAACT+CGG | 0.598920 | 4.4:-33171480 | None:intergenic |
| GGTACCCTCCACAAGTCGAT+CGG | 0.599711 | 4.4:-33166810 | None:intergenic |
| GCTCGATATTGTCGTCTTAG+GGG | 0.599763 | 4.4:+33165397 | MS.gene052373:CDS |
| TTCACAAGGAGGTCTACGAT+TGG | 0.599884 | 4.4:+33166473 | MS.gene052373:CDS |
| TCTCCAACAAGAGCAGAACT+GGG | 0.601244 | 4.4:-33175587 | None:intergenic |
| AGCAAGAAGATACACAATCC+CGG | 0.602614 | 4.4:-33172979 | None:intergenic |
| GAGGGAGCTCAAGAAATAAG+TGG | 0.603079 | 4.4:-33167873 | None:intergenic |
| GTAAAGGTTAAACTAAAGCA+AGG | 0.605462 | 4.4:+33172733 | MS.gene052373:intron |
| ACTGTTCCTGATGATGTAAG+TGG | 0.610282 | 4.4:+33171786 | MS.gene052373:CDS |
| CGAAAATAATTGGCTCTCTG+AGG | 0.610435 | 4.4:+33166579 | MS.gene052373:CDS |
| TCTGCGGTACCGATGAGTAT+GGG | 0.610606 | 4.4:+33165437 | MS.gene052373:CDS |
| GATTGGATATATATCAATCA+CGG | 0.614894 | 4.4:+33168175 | MS.gene052373:CDS |
| ATTGAAGATTCCCAAGTGCA+AGG | 0.615621 | 4.4:+33166913 | MS.gene052373:CDS |
| CAAGCAACTAAATTTGTCTG+TGG | 0.621913 | 4.4:+33173392 | MS.gene052373:CDS |
| TAATGACTTACAGTATGGAA+TGG | 0.623528 | 4.4:-33168281 | None:intergenic |
| ACCTAAAACCAGCAACCATG+AGG | 0.626255 | 4.4:+33174836 | MS.gene052373:CDS |
| CTTACATCATCAGGAACAGT+GGG | 0.627035 | 4.4:-33171783 | None:intergenic |
| GAGTTTACTACCTTGCACTT+GGG | 0.627712 | 4.4:-33166923 | None:intergenic |
| GGGCATCAAATCCCAAGCAA+TGG | 0.628535 | 4.4:+33174858 | MS.gene052373:CDS |
| CCTAAAACCAGCAACCATGA+GGG | 0.630105 | 4.4:+33174837 | MS.gene052373:CDS |
| CATACCAGCTCCCTGAACAA+TGG | 0.632892 | 4.4:-33173513 | None:intergenic |
| TTAGCCGATCGACTTGTGGA+GGG | 0.636760 | 4.4:+33166806 | MS.gene052373:CDS |
| CATCAATGAGATGTCTGTGG+TGG | 0.637086 | 4.4:+33167921 | MS.gene052373:CDS |
| CAGACAAGAACCGTTGTCAG+TGG | 0.638105 | 4.4:+33174655 | MS.gene052373:CDS |
| TACAATGCGATTTACATCTG+CGG | 0.638497 | 4.4:+33165421 | MS.gene052373:CDS |
| TTACCAGAGATCTGAAGTGG+GGG | 0.638758 | 4.4:+33168013 | MS.gene052373:CDS |
| CATTACCAGAGATCTGAAGT+GGG | 0.638794 | 4.4:+33168011 | MS.gene052373:CDS |
| TAGATACCATGCTATTCACA+AGG | 0.643601 | 4.4:+33166459 | MS.gene052373:intron |
| AGACCTCCTTGTGAATAGCA+TGG | 0.644341 | 4.4:-33166465 | None:intergenic |
| CTTGACAAGTCCACTGACAA+CGG | 0.645824 | 4.4:-33174665 | None:intergenic |
| ATGCCAGCTGATGTGGTCAG+TGG | 0.646227 | 4.4:-33175737 | None:intergenic |
| GCAGAATCATACTCACACCC+TGG | 0.653453 | 4.4:-33166842 | None:intergenic |
| CCGGCACTTACAAGATCCCA+GGG | 0.653556 | 4.4:-33173468 | None:intergenic |
| TGTGAGTATGATTCTGCCAG+AGG | 0.653951 | 4.4:+33166848 | MS.gene052373:CDS |
| CTAAAACCAGCAACCATGAG+GGG | 0.655884 | 4.4:+33174838 | MS.gene052373:CDS |
| ATCAATGAGATGTCTGTGGT+GGG | 0.655945 | 4.4:+33167922 | MS.gene052373:CDS |
| CGATGAGTATGGGACTGCAA+CGG | 0.660790 | 4.4:+33165447 | MS.gene052373:CDS |
| ACAATCAGGTGTGTTGAGTG+CGG | 0.662342 | 4.4:+33165366 | MS.gene052373:intron |
| CAATGAGCATATCTGGTGAG+GGG | 0.667194 | 4.4:+33172767 | MS.gene052373:CDS |
| GAGGAACGTTGTTGACATAG+GGG | 0.668721 | 4.4:-33165200 | None:intergenic |
| AACCAGAAATTACCATCACA+AGG | 0.669041 | 4.4:+33174542 | MS.gene052373:CDS |
| CTTGCTAACAAATAGGCCTG+AGG | 0.671819 | 4.4:+33171272 | MS.gene052373:CDS |
| ACTTACATCATCAGGAACAG+TGG | 0.673842 | 4.4:-33171784 | None:intergenic |
| TTCGAAGAGTAAAGGCGTCG+GGG | 0.678180 | 4.4:+33171194 | MS.gene052373:CDS |
| ATTACCAGAGATCTGAAGTG+GGG | 0.685797 | 4.4:+33168012 | MS.gene052373:CDS |
| GGGGATCAGTGTGAGAACTG+TGG | 0.689601 | 4.4:+33166869 | MS.gene052373:CDS |
| TATGTTGAAGAGATTGATGT+CGG | 0.692037 | 4.4:+33174625 | MS.gene052373:CDS |
| TACCAGAGATCTGAAGTGGG+GGG | 0.699203 | 4.4:+33168014 | MS.gene052373:CDS |
| GCACACTTCAGTTTGCTCAG+GGG | 0.701199 | 4.4:-33166533 | None:intergenic |
| TTCCAATGCTGATCACACCA+TGG | 0.701218 | 4.4:+33174891 | MS.gene052373:CDS |
| TGAGTATGATTCTGCCAGAG+GGG | 0.701606 | 4.4:+33166850 | MS.gene052373:CDS |
| GCACACGAATGAGAAGCTAG+AGG | 0.715856 | 4.4:+33175697 | MS.gene052373:CDS |
| GAGAAAGAATCACATTCCCG+GGG | 0.722304 | 4.4:+33175606 | MS.gene052373:CDS |
| ATACATCAATGAGATGTCTG+TGG | 0.725592 | 4.4:+33167918 | MS.gene052373:CDS |
| ATACCATGCTATTCACAAGG+AGG | 0.735757 | 4.4:+33166462 | MS.gene052373:CDS |
| CCAACAAGAGCAGAACTGGG+CGG | 0.760494 | 4.4:-33175584 | None:intergenic |
| TGGTCCGTATCACAAATACG+AGG | 0.816438 | 4.4:-33167853 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 33165129 | 33175799 | 33165129 | ID=MS.gene052373 |
| chr4.4 | mRNA | 33165129 | 33175799 | 33165129 | ID=MS.gene052373.t1;Parent=MS.gene052373 |
| chr4.4 | exon | 33165129 | 33165243 | 33165129 | ID=MS.gene052373.t1.exon1;Parent=MS.gene052373.t1 |
| chr4.4 | CDS | 33165129 | 33165243 | 33165129 | ID=cds.MS.gene052373.t1;Parent=MS.gene052373.t1 |
| chr4.4 | exon | 33165374 | 33165518 | 33165374 | ID=MS.gene052373.t1.exon2;Parent=MS.gene052373.t1 |
| chr4.4 | CDS | 33165374 | 33165518 | 33165374 | ID=cds.MS.gene052373.t1;Parent=MS.gene052373.t1 |
| chr4.4 | exon | 33166462 | 33166615 | 33166462 | ID=MS.gene052373.t1.exon3;Parent=MS.gene052373.t1 |
| chr4.4 | CDS | 33166462 | 33166615 | 33166462 | ID=cds.MS.gene052373.t1;Parent=MS.gene052373.t1 |
| chr4.4 | exon | 33166779 | 33166934 | 33166779 | ID=MS.gene052373.t1.exon4;Parent=MS.gene052373.t1 |
| chr4.4 | CDS | 33166779 | 33166934 | 33166779 | ID=cds.MS.gene052373.t1;Parent=MS.gene052373.t1 |
| chr4.4 | exon | 33167838 | 33168068 | 33167838 | ID=MS.gene052373.t1.exon5;Parent=MS.gene052373.t1 |
| chr4.4 | CDS | 33167838 | 33168068 | 33167838 | ID=cds.MS.gene052373.t1;Parent=MS.gene052373.t1 |
| chr4.4 | exon | 33168149 | 33168292 | 33168149 | ID=MS.gene052373.t1.exon6;Parent=MS.gene052373.t1 |
| chr4.4 | CDS | 33168149 | 33168292 | 33168149 | ID=cds.MS.gene052373.t1;Parent=MS.gene052373.t1 |
| chr4.4 | exon | 33170495 | 33170585 | 33170495 | ID=MS.gene052373.t1.exon7;Parent=MS.gene052373.t1 |
| chr4.4 | CDS | 33170495 | 33170585 | 33170495 | ID=cds.MS.gene052373.t1;Parent=MS.gene052373.t1 |
| chr4.4 | exon | 33171187 | 33171293 | 33171187 | ID=MS.gene052373.t1.exon8;Parent=MS.gene052373.t1 |
| chr4.4 | CDS | 33171187 | 33171293 | 33171187 | ID=cds.MS.gene052373.t1;Parent=MS.gene052373.t1 |
| chr4.4 | exon | 33171397 | 33171511 | 33171397 | ID=MS.gene052373.t1.exon9;Parent=MS.gene052373.t1 |
| chr4.4 | CDS | 33171397 | 33171511 | 33171397 | ID=cds.MS.gene052373.t1;Parent=MS.gene052373.t1 |
| chr4.4 | exon | 33171760 | 33171887 | 33171760 | ID=MS.gene052373.t1.exon10;Parent=MS.gene052373.t1 |
| chr4.4 | CDS | 33171760 | 33171887 | 33171760 | ID=cds.MS.gene052373.t1;Parent=MS.gene052373.t1 |
| chr4.4 | exon | 33172739 | 33172804 | 33172739 | ID=MS.gene052373.t1.exon11;Parent=MS.gene052373.t1 |
| chr4.4 | CDS | 33172739 | 33172804 | 33172739 | ID=cds.MS.gene052373.t1;Parent=MS.gene052373.t1 |
| chr4.4 | exon | 33172912 | 33173040 | 33172912 | ID=MS.gene052373.t1.exon12;Parent=MS.gene052373.t1 |
| chr4.4 | CDS | 33172912 | 33173040 | 33172912 | ID=cds.MS.gene052373.t1;Parent=MS.gene052373.t1 |
| chr4.4 | exon | 33173387 | 33173530 | 33173387 | ID=MS.gene052373.t1.exon13;Parent=MS.gene052373.t1 |
| chr4.4 | CDS | 33173387 | 33173530 | 33173387 | ID=cds.MS.gene052373.t1;Parent=MS.gene052373.t1 |
| chr4.4 | exon | 33173618 | 33173741 | 33173618 | ID=MS.gene052373.t1.exon14;Parent=MS.gene052373.t1 |
| chr4.4 | CDS | 33173618 | 33173741 | 33173618 | ID=cds.MS.gene052373.t1;Parent=MS.gene052373.t1 |
| chr4.4 | exon | 33174473 | 33174711 | 33174473 | ID=MS.gene052373.t1.exon15;Parent=MS.gene052373.t1 |
| chr4.4 | CDS | 33174473 | 33174711 | 33174473 | ID=cds.MS.gene052373.t1;Parent=MS.gene052373.t1 |
| chr4.4 | exon | 33174811 | 33174912 | 33174811 | ID=MS.gene052373.t1.exon16;Parent=MS.gene052373.t1 |
| chr4.4 | CDS | 33174811 | 33174912 | 33174811 | ID=cds.MS.gene052373.t1;Parent=MS.gene052373.t1 |
| chr4.4 | exon | 33175569 | 33175799 | 33175569 | ID=MS.gene052373.t1.exon17;Parent=MS.gene052373.t1 |
| chr4.4 | CDS | 33175569 | 33175799 | 33175569 | ID=cds.MS.gene052373.t1;Parent=MS.gene052373.t1 |
| Gene Sequence |
| Protein sequence |
