Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029439.t1 | XP_013470162.1 | 98 | 293 | 6 | 0 | 1 | 293 | 97 | 389 | 7.20E-168 | 599.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029439.t1 | Q65XS5 | 34.2 | 310 | 152 | 9 | 29 | 291 | 85 | 389 | 3.5e-38 | 160.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029439.t1 | A0A072W1N5 | 98.0 | 293 | 6 | 0 | 1 | 293 | 97 | 389 | 5.2e-168 | 599.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene029439 | MS.gene047241 | PPI |
| MS.gene002006 | MS.gene029439 | PPI |
| MS.gene072101 | MS.gene029439 | PPI |
| MS.gene00579 | MS.gene029439 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029439.t1 | MTR_1g110290 | 97.952 | 293 | 6 | 0 | 1 | 293 | 97 | 389 | 0.0 | 604 |
| MS.gene029439.t1 | MTR_5g055480 | 75.085 | 293 | 72 | 1 | 1 | 293 | 95 | 386 | 2.85e-171 | 479 |
| MS.gene029439.t1 | MTR_6g083830 | 64.068 | 295 | 103 | 3 | 1 | 293 | 122 | 415 | 8.29e-143 | 409 |
| MS.gene029439.t1 | MTR_5g006930 | 64.068 | 295 | 103 | 3 | 1 | 293 | 89 | 382 | 4.06e-139 | 398 |
| MS.gene029439.t1 | MTR_5g006920 | 62.034 | 295 | 109 | 3 | 1 | 293 | 124 | 417 | 1.01e-132 | 383 |
| MS.gene029439.t1 | MTR_1g016880 | 57.192 | 292 | 123 | 2 | 1 | 291 | 79 | 369 | 7.21e-128 | 369 |
| MS.gene029439.t1 | MTR_3g104840 | 57.143 | 294 | 105 | 4 | 2 | 293 | 115 | 389 | 9.59e-121 | 352 |
| MS.gene029439.t1 | MTR_2g005350 | 54.795 | 292 | 129 | 2 | 2 | 291 | 142 | 432 | 2.02e-117 | 345 |
| MS.gene029439.t1 | MTR_8g015500 | 55.034 | 298 | 131 | 3 | 1 | 296 | 116 | 412 | 7.00e-117 | 342 |
| MS.gene029439.t1 | MTR_3g108740 | 41.905 | 315 | 145 | 6 | 3 | 288 | 66 | 371 | 3.39e-75 | 235 |
| MS.gene029439.t1 | MTR_1g009960 | 41.935 | 310 | 152 | 5 | 3 | 288 | 85 | 390 | 8.80e-75 | 234 |
| MS.gene029439.t1 | MTR_4g127550 | 41.883 | 308 | 152 | 7 | 6 | 290 | 84 | 387 | 5.68e-72 | 227 |
| MS.gene029439.t1 | MTR_1g009960 | 44.444 | 261 | 136 | 3 | 3 | 256 | 85 | 343 | 1.25e-69 | 220 |
| MS.gene029439.t1 | MTR_2g037600 | 41.905 | 315 | 149 | 8 | 3 | 290 | 79 | 386 | 1.36e-69 | 221 |
| MS.gene029439.t1 | MTR_2g037620 | 41.754 | 285 | 140 | 6 | 28 | 290 | 97 | 377 | 9.96e-69 | 218 |
| MS.gene029439.t1 | MTR_2g024120 | 36.593 | 317 | 157 | 9 | 13 | 288 | 46 | 359 | 1.65e-52 | 176 |
| MS.gene029439.t1 | MTR_8g094180 | 35.463 | 313 | 148 | 9 | 28 | 291 | 55 | 362 | 2.96e-50 | 170 |
| MS.gene029439.t1 | MTR_8g094180 | 35.714 | 266 | 136 | 6 | 28 | 261 | 55 | 317 | 8.18e-47 | 160 |
| MS.gene029439.t1 | MTR_3g106930 | 36.333 | 300 | 174 | 8 | 5 | 291 | 75 | 370 | 1.62e-45 | 158 |
| MS.gene029439.t1 | MTR_1g048320 | 36.039 | 308 | 169 | 9 | 3 | 291 | 39 | 337 | 2.99e-41 | 146 |
| MS.gene029439.t1 | MTR_2g087610 | 35.473 | 296 | 146 | 12 | 29 | 291 | 78 | 361 | 1.35e-39 | 142 |
| MS.gene029439.t1 | MTR_1g031060 | 35.691 | 311 | 169 | 10 | 3 | 291 | 54 | 355 | 8.64e-38 | 137 |
| MS.gene029439.t1 | MTR_1g031080 | 35.021 | 237 | 125 | 7 | 76 | 291 | 57 | 285 | 3.70e-31 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029439.t1 | AT1G68390 | 65.986 | 294 | 96 | 3 | 1 | 291 | 110 | 402 | 3.50e-144 | 412 |
| MS.gene029439.t1 | AT5G11730 | 58.586 | 297 | 121 | 2 | 1 | 296 | 90 | 385 | 1.22e-129 | 374 |
| MS.gene029439.t1 | AT5G25970 | 57.383 | 298 | 125 | 2 | 1 | 297 | 91 | 387 | 4.55e-126 | 365 |
| MS.gene029439.t1 | AT5G25970 | 57.383 | 298 | 125 | 2 | 1 | 297 | 91 | 387 | 4.55e-126 | 365 |
| MS.gene029439.t1 | AT5G25970 | 57.383 | 298 | 125 | 2 | 1 | 297 | 91 | 387 | 4.55e-126 | 365 |
| MS.gene029439.t1 | AT1G10880 | 58.644 | 295 | 119 | 3 | 3 | 296 | 93 | 385 | 2.10e-125 | 363 |
| MS.gene029439.t1 | AT3G21310 | 57.432 | 296 | 124 | 2 | 2 | 296 | 88 | 382 | 5.97e-125 | 362 |
| MS.gene029439.t1 | AT3G21310 | 57.432 | 296 | 124 | 2 | 2 | 296 | 88 | 382 | 5.97e-125 | 362 |
| MS.gene029439.t1 | AT1G68380 | 58.784 | 296 | 112 | 5 | 1 | 291 | 96 | 386 | 1.15e-122 | 356 |
| MS.gene029439.t1 | AT1G10280 | 53.535 | 297 | 135 | 2 | 2 | 296 | 116 | 411 | 5.30e-120 | 350 |
| MS.gene029439.t1 | AT1G73810 | 60.000 | 300 | 112 | 5 | 1 | 296 | 122 | 417 | 3.74e-118 | 346 |
| MS.gene029439.t1 | AT1G51770 | 56.187 | 299 | 127 | 3 | 2 | 297 | 97 | 394 | 1.57e-117 | 344 |
| MS.gene029439.t1 | AT5G16170 | 56.044 | 273 | 115 | 2 | 29 | 296 | 136 | 408 | 2.42e-113 | 333 |
| MS.gene029439.t1 | AT1G51770 | 50.836 | 299 | 116 | 4 | 2 | 297 | 97 | 367 | 1.36e-100 | 300 |
| MS.gene029439.t1 | AT4G31350 | 42.014 | 288 | 139 | 4 | 28 | 292 | 88 | 370 | 1.61e-75 | 236 |
| MS.gene029439.t1 | AT4G31350 | 42.014 | 288 | 139 | 4 | 28 | 292 | 88 | 370 | 1.61e-75 | 236 |
| MS.gene029439.t1 | AT4G31350 | 42.014 | 288 | 139 | 4 | 28 | 292 | 88 | 370 | 1.61e-75 | 236 |
| MS.gene029439.t1 | AT4G31350 | 40.000 | 285 | 144 | 3 | 28 | 292 | 88 | 365 | 8.24e-71 | 223 |
| MS.gene029439.t1 | AT4G30060 | 39.185 | 319 | 156 | 6 | 1 | 290 | 80 | 389 | 1.80e-70 | 223 |
| MS.gene029439.t1 | AT4G30060 | 39.185 | 319 | 156 | 6 | 1 | 290 | 80 | 389 | 1.80e-70 | 223 |
| MS.gene029439.t1 | AT4G25870 | 40.645 | 310 | 159 | 5 | 6 | 292 | 75 | 382 | 3.42e-70 | 222 |
| MS.gene029439.t1 | AT2G19160 | 38.486 | 317 | 165 | 7 | 1 | 292 | 77 | 388 | 1.73e-69 | 221 |
| MS.gene029439.t1 | AT2G19160 | 38.486 | 317 | 165 | 7 | 1 | 292 | 77 | 388 | 1.73e-69 | 221 |
| MS.gene029439.t1 | AT3G21310 | 58.434 | 166 | 69 | 0 | 2 | 167 | 88 | 253 | 1.11e-65 | 207 |
| MS.gene029439.t1 | AT5G57270 | 40.138 | 289 | 143 | 5 | 29 | 292 | 98 | 381 | 2.98e-65 | 209 |
| MS.gene029439.t1 | AT5G57270 | 40.138 | 289 | 143 | 5 | 29 | 292 | 98 | 381 | 2.98e-65 | 209 |
| MS.gene029439.t1 | AT5G57270 | 40.138 | 289 | 143 | 5 | 29 | 292 | 98 | 381 | 2.98e-65 | 209 |
| MS.gene029439.t1 | AT5G57270 | 40.138 | 289 | 143 | 5 | 29 | 292 | 98 | 381 | 2.98e-65 | 209 |
| MS.gene029439.t1 | AT5G57270 | 40.138 | 289 | 143 | 5 | 29 | 292 | 98 | 381 | 2.98e-65 | 209 |
| MS.gene029439.t1 | AT5G25330 | 37.624 | 303 | 170 | 10 | 4 | 291 | 57 | 355 | 5.45e-53 | 177 |
| MS.gene029439.t1 | AT1G62305 | 36.634 | 303 | 144 | 9 | 28 | 288 | 68 | 364 | 1.23e-50 | 171 |
| MS.gene029439.t1 | AT3G52060 | 34.314 | 306 | 175 | 10 | 3 | 291 | 43 | 339 | 8.72e-50 | 168 |
| MS.gene029439.t1 | AT5G14550 | 35.161 | 310 | 152 | 8 | 24 | 289 | 60 | 364 | 1.03e-49 | 169 |
| MS.gene029439.t1 | AT5G14550 | 35.161 | 310 | 152 | 8 | 24 | 289 | 60 | 364 | 1.10e-49 | 169 |
| MS.gene029439.t1 | AT5G14550 | 37.308 | 260 | 141 | 6 | 24 | 264 | 60 | 316 | 9.68e-49 | 166 |
| MS.gene029439.t1 | AT1G11940 | 36.644 | 292 | 142 | 8 | 28 | 279 | 73 | 361 | 1.15e-48 | 166 |
| MS.gene029439.t1 | AT1G62305 | 42.453 | 212 | 96 | 5 | 28 | 217 | 68 | 275 | 9.43e-46 | 157 |
| MS.gene029439.t1 | AT1G11940 | 46.067 | 178 | 89 | 4 | 28 | 201 | 73 | 247 | 1.89e-42 | 147 |
| MS.gene029439.t1 | AT5G22070 | 33.030 | 330 | 164 | 14 | 3 | 291 | 42 | 355 | 5.99e-42 | 148 |
| MS.gene029439.t1 | AT5G14550 | 35.739 | 291 | 149 | 10 | 24 | 289 | 60 | 337 | 2.44e-41 | 146 |
| MS.gene029439.t1 | AT4G32290 | 37.456 | 283 | 154 | 9 | 29 | 291 | 93 | 372 | 6.77e-37 | 135 |
| MS.gene029439.t1 | AT1G62305 | 33.003 | 303 | 131 | 9 | 28 | 288 | 68 | 340 | 1.46e-36 | 134 |
Find 0 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATGTTACATTTTAATTTT+TGG | + | 10654:15804-15823 | MS.gene029439:intron | 10.0% |
| !! | AAGAAATGCAAGTATAATAA+TGG | + | 10654:16939-16958 | MS.gene029439:CDS | 20.0% |
| !! | ATTGAAAAATGATTATTGCT+TGG | + | 10654:15854-15873 | MS.gene029439:intron | 20.0% |
| !! | GATAGTAACTTATGTTTATT+AGG | - | 10654:17074-17093 | None:intergenic | 20.0% |
| !! | GTTTATTAAGTAAGAATAGA+TGG | - | 10654:16553-16572 | None:intergenic | 20.0% |
| !! | TATACAAATTGCTTAATAGA+AGG | + | 10654:15941-15960 | MS.gene029439:intron | 20.0% |
| !!! | ATTGTGAACTTTTAACAAAA+TGG | + | 10654:16120-16139 | MS.gene029439:intron | 20.0% |
| !!! | TGATGTTAATGTTAAGTTTT+TGG | + | 10654:16902-16921 | MS.gene029439:CDS | 20.0% |
| ! | AACTTTATTCTAACCAAAGT+TGG | - | 10654:16801-16820 | None:intergenic | 25.0% |
| ! | ACTTTGGTTAGAATAAAGTT+TGG | + | 10654:16801-16820 | MS.gene029439:CDS | 25.0% |
| ! | CATTCTAATCCTTCTTATAA+TGG | + | 10654:15698-15717 | MS.gene029439:CDS | 25.0% |
| ! | CTTTGGTTAGAATAAAGTTT+GGG | + | 10654:16802-16821 | MS.gene029439:CDS | 25.0% |
| ! | TTGCAATATTCTTGAAAAAC+TGG | - | 10654:16747-16766 | None:intergenic | 25.0% |
| ! | TTGCTTGGATTTAATTCAAA+TGG | + | 10654:15869-15888 | MS.gene029439:intron | 25.0% |
| ! | TTTGGTTAGAATAAAGTTTG+GGG | + | 10654:16803-16822 | MS.gene029439:CDS | 25.0% |
| !! | AAAAACATGAATGCAACTTT+TGG | - | 10654:15599-15618 | None:intergenic | 25.0% |
| !! | CTTTTAACAAAATGGTACTA+TGG | + | 10654:16128-16147 | MS.gene029439:intron | 25.0% |
| !! | GTGTTTTTCTATTAGGATTT+GGG | + | 10654:17220-17239 | MS.gene029439:intron | 25.0% |
| !! | TGCTAATGTGTTTTTCTATT+AGG | + | 10654:17213-17232 | MS.gene029439:intron | 25.0% |
| !! | TGTGTTTTTCTATTAGGATT+TGG | + | 10654:17219-17238 | MS.gene029439:intron | 25.0% |
| !!! | AAATAAACAGTGATGGATAT+TGG | + | 10654:16373-16392 | MS.gene029439:intron | 25.0% |
| !!! | GTTTTTCAAGAATATTGCAA+AGG | + | 10654:16747-16766 | MS.gene029439:CDS | 25.0% |
| !!! | TTAAGTTTTTGGAGAGATTA+AGG | + | 10654:16913-16932 | MS.gene029439:CDS | 25.0% |
| !!! | TTTTAGCTAGAATGATGATA+TGG | + | 10654:16066-16085 | MS.gene029439:intron | 25.0% |
| AAAAAACTAACTGACCTTAC+TGG | - | 10654:15765-15784 | None:intergenic | 30.0% | |
| AAAAACTAACTGACCTTACT+GGG | - | 10654:15764-15783 | None:intergenic | 30.0% | |
| AACAGAGAAATAAACAGTGA+TGG | + | 10654:16366-16385 | MS.gene029439:intron | 30.0% | |
| AATATAGTCAATTCCCTTCA+TGG | + | 10654:17185-17204 | MS.gene029439:intron | 30.0% | |
| ATTCAAATAGGAGTTTGACT+TGG | + | 10654:16832-16851 | MS.gene029439:CDS | 30.0% | |
| CAGATTAAGACAATAGAGAA+TGG | - | 10654:15831-15850 | None:intergenic | 30.0% | |
| TATAATGCAGGAAGTTGAAT+GGG | + | 10654:16410-16429 | MS.gene029439:intron | 30.0% | |
| TCTCTGTTGTAATAAGTTAC+TGG | - | 10654:16354-16373 | None:intergenic | 30.0% | |
| TGGATGATGAAGAATTGTTA+TGG | + | 10654:15525-15544 | MS.gene029439:CDS | 30.0% | |
| ! | ATATAACAAGACTTTTGCAC+AGG | - | 10654:15914-15933 | None:intergenic | 30.0% |
| ! | ATGCATACTTGTTTCTTTGT+AGG | + | 10654:16312-16331 | MS.gene029439:intron | 30.0% |
| ! | TTCAAATAGGAGTTTGACTT+GGG | + | 10654:16833-16852 | MS.gene029439:CDS | 30.0% |
| !! | AGTTTTTCAAAGGACATGAA+GGG | + | 10654:15657-15676 | MS.gene029439:CDS | 30.0% |
| !! | TGCATTCATGTTTTTGACAA+GGG | + | 10654:15604-15623 | MS.gene029439:CDS | 30.0% |
| !! | TTGCATTCATGTTTTTGACA+AGG | + | 10654:15603-15622 | MS.gene029439:CDS | 30.0% |
| AACTAACCCTTCTATAATGC+AGG | + | 10654:16398-16417 | MS.gene029439:intron | 35.0% | |
| AAGCCAAGTGAAGAGTAAAA+TGG | + | 10654:15977-15996 | MS.gene029439:intron | 35.0% | |
| ACATTAGCAGATATCCATGA+AGG | - | 10654:17202-17221 | None:intergenic | 35.0% | |
| AGCAAACAGAAAACATGCAT+TGG | - | 10654:16973-16992 | None:intergenic | 35.0% | |
| AGCCAAGTGAAGAGTAAAAT+GGG | + | 10654:15978-15997 | MS.gene029439:intron | 35.0% | |
| ATAATGCAGGAAGTTGAATG+GGG | + | 10654:16411-16430 | MS.gene029439:intron | 35.0% | |
| ATTCTTCTACCGTGAAAAAC+AGG | - | 10654:15740-15759 | None:intergenic | 35.0% | |
| CAAAATTGTCCAGTCAAACA+AGG | + | 10654:16252-16271 | MS.gene029439:intron | 35.0% | |
| CAACTTCCTGCATTATAGAA+GGG | - | 10654:16407-16426 | None:intergenic | 35.0% | |
| CATTAGCAGATATCCATGAA+GGG | - | 10654:17201-17220 | None:intergenic | 35.0% | |
| CTATAATGCAGGAAGTTGAA+TGG | + | 10654:16409-16428 | MS.gene029439:intron | 35.0% | |
| CTGATATGAGAACAAATCGT+TGG | - | 10654:16500-16519 | None:intergenic | 35.0% | |
| GTTAGAATAAAGTTTGGGGA+AGG | + | 10654:16807-16826 | MS.gene029439:CDS | 35.0% | |
| TCAACTTCCTGCATTATAGA+AGG | - | 10654:16408-16427 | None:intergenic | 35.0% | |
| TCAGATCTCAAAAAATGAGC+TGG | - | 10654:16885-16904 | None:intergenic | 35.0% | |
| TCTGTCCATTTCAAACCATT+GGG | - | 10654:16685-16704 | None:intergenic | 35.0% | |
| TGAACATTACTTGCCAACTT+TGG | + | 10654:16785-16804 | MS.gene029439:CDS | 35.0% | |
| TGTTCAAACTGCATAACCTT+AGG | - | 10654:17041-17060 | None:intergenic | 35.0% | |
| TTGAAAAACTGTTCCCACAA+AGG | - | 10654:15647-15666 | None:intergenic | 35.0% | |
| TTGGGGAAGGAAATTCAAAT+AGG | + | 10654:16820-16839 | MS.gene029439:CDS | 35.0% | |
| ! | AAGAGCTTTGACAAAGTACT+AGG | - | 10654:17008-17027 | None:intergenic | 35.0% |
| ! | ACTTTAAGTCCTTGTTTGAC+TGG | - | 10654:16264-16283 | None:intergenic | 35.0% |
| ! | ATGCATGTTTTCTGTTTGCT+AGG | + | 10654:16973-16992 | MS.gene029439:CDS | 35.0% |
| !! | CAGTTTTTCAAAGGACATGA+AGG | + | 10654:15656-15675 | MS.gene029439:CDS | 35.0% |
| !! | GCATTCATGTTTTTGACAAG+GGG | + | 10654:15605-15624 | MS.gene029439:CDS | 35.0% |
| !! | TTGTGGGAACAGTTTTTCAA+AGG | + | 10654:15647-15666 | MS.gene029439:CDS | 35.0% |
| !!! | ACTTTTGGAACTCGTTCAAA+AGG | - | 10654:15584-15603 | None:intergenic | 35.0% |
| !!! | CTTTTGGAACTCGTTCAAAA+GGG | - | 10654:15583-15602 | None:intergenic | 35.0% |
| ATGGTTGAGAAGTTGAAGAG+TGG | - | 10654:16534-16553 | None:intergenic | 40.0% | |
| CTCAAAAAATGAGCTGGATG+TGG | - | 10654:16879-16898 | None:intergenic | 40.0% | |
| CTCTGTCCATTTCAAACCAT+TGG | - | 10654:16686-16705 | None:intergenic | 40.0% | |
| GCCAAGTGAAGAGTAAAATG+GGG | + | 10654:15979-15998 | MS.gene029439:intron | 40.0% | |
| GGGTGTGATCCATTATAAGA+AGG | - | 10654:15710-15729 | None:intergenic | 40.0% | |
| GTCTGTGTACATGTCTAAAC+TGG | - | 10654:17153-17172 | None:intergenic | 40.0% | |
| GTCTTATGATGATCCTAGCT+CGG | + | 10654:16593-16612 | MS.gene029439:CDS | 40.0% | |
| GTGAAGAGTAAAATGGGGAA+AGG | + | 10654:15984-16003 | MS.gene029439:intron | 40.0% | |
| ! | TCCCCATTTTACTCTTCACT+TGG | - | 10654:15983-16002 | None:intergenic | 40.0% |
| !!! | TGTGTTTTTGGCACCTTTGT+GGG | + | 10654:15631-15650 | MS.gene029439:CDS | 40.0% |
| AATGGAGAAAAGGGTCCCAA+TGG | + | 10654:16667-16686 | MS.gene029439:CDS | 45.0% | |
| AGGGTCCCAATGGTTTGAAA+TGG | + | 10654:16677-16696 | MS.gene029439:CDS | 45.0% | |
| CGGTAGAAGAATTCCCAGTA+AGG | + | 10654:15748-15767 | MS.gene029439:CDS | 45.0% | |
| CGTGAAAAACAGGACTCTCA+GGG | - | 10654:15730-15749 | None:intergenic | 45.0% | |
| GAAGTTGAAGAGTGGTATGC+AGG | - | 10654:16526-16545 | None:intergenic | 45.0% | |
| GCTCTTGAAGATTGCACCTA+AGG | + | 10654:17022-17041 | MS.gene029439:CDS | 45.0% | |
| TAGCATCCAAATGTTACCCG+AGG | + | 10654:16632-16651 | MS.gene029439:CDS | 45.0% | |
| TATGATGATCCTAGCTCGGT+CGG | + | 10654:16597-16616 | MS.gene029439:CDS | 45.0% | |
| TGCAGTTTGAACACTACGAC+AGG | + | 10654:17048-17067 | MS.gene029439:intron | 45.0% | |
| ! | ATGGACAGAGAACTTGCTCT+AGG | + | 10654:16696-16715 | MS.gene029439:CDS | 45.0% |
| ! | CGAGAAGTGCATTCGATAGT+AGG | - | 10654:16467-16486 | None:intergenic | 45.0% |
| !! | CCTGAGAGTCCTGTTTTTCA+CGG | + | 10654:15728-15747 | MS.gene029439:CDS | 45.0% |
| !!! | CTGTGTTTTTGGCACCTTTG+TGG | + | 10654:15630-15649 | MS.gene029439:CDS | 45.0% |
| ATGTTACCCGAGGTTTCCCT+CGG | + | 10654:16642-16661 | MS.gene029439:CDS | 50.0% | |
| CCGTGAAAAACAGGACTCTC+AGG | - | 10654:15731-15750 | None:intergenic | 50.0% | |
| GGGAAACCTCGGGTAACATT+TGG | - | 10654:16641-16660 | None:intergenic | 50.0% | |
| !! | ACTTGGGTTGACTGGTCAAG+GGG | + | 10654:16849-16868 | MS.gene029439:CDS | 50.0% |
| !! | GACTTGGGTTGACTGGTCAA+GGG | + | 10654:16848-16867 | MS.gene029439:CDS | 50.0% |
| !! | GGAGTTTGACTTGGGTTGAC+TGG | + | 10654:16841-16860 | MS.gene029439:CDS | 50.0% |
| !! | TGACTTGGGTTGACTGGTCA+AGG | + | 10654:16847-16866 | MS.gene029439:CDS | 50.0% |
| !!! | GACAAGGGGTGCTGTGTTTT+TGG | + | 10654:15619-15638 | MS.gene029439:CDS | 50.0% |
| CCCTCGGCGAATGGAGAAAA+GGG | + | 10654:16658-16677 | MS.gene029439:CDS | 55.0% | |
| TCCCTCGGCGAATGGAGAAA+AGG | + | 10654:16657-16676 | MS.gene029439:CDS | 55.0% | |
| ! | ACCCTTTTCTCCATTCGCCG+AGG | - | 10654:16662-16681 | None:intergenic | 55.0% |
| ! | CCCTTTTCTCCATTCGCCGA+GGG | - | 10654:16661-16680 | None:intergenic | 55.0% |
| CATTCGCCGAGGGAAACCTC+GGG | - | 10654:16651-16670 | None:intergenic | 60.0% | |
| CCATTCGCCGAGGGAAACCT+CGG | - | 10654:16652-16671 | None:intergenic | 60.0% | |
| ! | TGGGTTGACTGGTCAAGGGG+TGG | + | 10654:16852-16871 | MS.gene029439:CDS | 60.0% |
| CCGAGGTTTCCCTCGGCGAA+TGG | + | 10654:16649-16668 | MS.gene029439:CDS | 65.0% | |
| GATCCTAGCTCGGTCGGTCG+TGG | + | 10654:16603-16622 | MS.gene029439:CDS | 65.0% | |
| CGACCACGACCGACCGAGCT+AGG | - | 10654:16609-16628 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 10654 | gene | 15515 | 17249 | 15515 | ID=MS.gene029439 |
| 10654 | mRNA | 15515 | 17249 | 15515 | ID=MS.gene029439.t1;Parent=MS.gene029439 |
| 10654 | exon | 15515 | 15769 | 15515 | ID=MS.gene029439.t1.exon1;Parent=MS.gene029439.t1 |
| 10654 | CDS | 15515 | 15769 | 15515 | ID=cds.MS.gene029439.t1;Parent=MS.gene029439.t1 |
| 10654 | exon | 16420 | 17043 | 16420 | ID=MS.gene029439.t1.exon2;Parent=MS.gene029439.t1 |
| 10654 | CDS | 16420 | 17043 | 16420 | ID=cds.MS.gene029439.t1;Parent=MS.gene029439.t1 |
| 10654 | exon | 17235 | 17249 | 17235 | ID=MS.gene029439.t1.exon3;Parent=MS.gene029439.t1 |
| 10654 | CDS | 17235 | 17249 | 17235 | ID=cds.MS.gene029439.t1;Parent=MS.gene029439.t1 |
| Gene Sequence |
| Protein sequence |
