AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene002006

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002006.t1 MTR_2g005350 97.712 437 5 4 1 434 4 438 0.0 864
MS.gene002006.t1 MTR_1g016880 56.918 318 134 3 119 434 60 376 7.60e-131 382
MS.gene002006.t1 MTR_1g110290 52.812 320 148 2 116 434 76 393 1.31e-121 360
MS.gene002006.t1 MTR_5g055480 52.258 310 146 1 125 434 83 390 1.02e-120 357
MS.gene002006.t1 MTR_5g006930 45.897 390 196 3 46 434 11 386 3.78e-120 355
MS.gene002006.t1 MTR_8g015500 53.770 305 139 2 130 433 109 412 1.22e-117 350
MS.gene002006.t1 MTR_5g006920 43.645 417 198 5 31 434 29 421 1.19e-116 348
MS.gene002006.t1 MTR_6g083830 52.427 309 145 2 127 434 112 419 1.70e-116 347
MS.gene002006.t1 MTR_3g104840 47.756 312 143 4 124 434 101 393 1.33e-100 305
MS.gene002006.t1 MTR_3g108740 41.824 318 162 5 131 427 58 373 5.86e-75 239
MS.gene002006.t1 MTR_1g009960 43.000 300 149 3 155 434 102 399 6.44e-73 234
MS.gene002006.t1 MTR_4g127550 41.667 288 147 3 161 429 104 389 6.34e-70 226
MS.gene002006.t1 MTR_1g009960 46.721 244 122 2 155 392 102 343 2.86e-68 221
MS.gene002006.t1 MTR_2g037600 43.007 286 141 4 164 429 105 388 3.40e-68 222
MS.gene002006.t1 MTR_2g037620 41.754 285 145 3 164 429 97 379 2.58e-67 219
MS.gene002006.t1 MTR_2g024120 39.145 304 138 10 164 425 61 359 4.07e-51 177
MS.gene002006.t1 MTR_8g094180 36.624 314 144 11 164 428 55 362 2.03e-48 169
MS.gene002006.t1 MTR_3g106930 37.179 312 180 8 133 432 67 374 1.57e-46 164
MS.gene002006.t1 MTR_8g094180 37.879 264 127 8 164 394 55 314 5.06e-45 159
MS.gene002006.t1 MTR_1g048320 38.062 289 148 10 164 432 64 341 6.12e-41 149
MS.gene002006.t1 MTR_2g087610 34.768 302 149 10 165 432 78 365 1.16e-39 146
MS.gene002006.t1 MTR_1g031060 34.364 291 158 8 164 432 80 359 1.78e-33 129
MS.gene002006.t1 MTR_1g031080 35.223 247 130 7 207 432 52 289 1.82e-31 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002006.t1 AT1G10280 57.143 434 161 6 2 434 3 412 0.0 511
MS.gene002006.t1 AT5G11730 55.960 302 132 1 133 434 86 386 8.75e-126 370
MS.gene002006.t1 AT5G25970 54.430 316 142 2 119 433 72 386 1.00e-124 367
MS.gene002006.t1 AT5G25970 54.430 316 142 2 119 433 72 386 1.00e-124 367
MS.gene002006.t1 AT5G25970 54.430 316 142 2 119 433 72 386 1.00e-124 367
MS.gene002006.t1 AT1G51770 54.952 313 139 2 123 434 81 392 2.62e-124 367
MS.gene002006.t1 AT3G21310 54.777 314 140 2 122 434 71 383 1.14e-122 362
MS.gene002006.t1 AT3G21310 54.777 314 140 2 122 434 71 383 1.14e-122 362
MS.gene002006.t1 AT1G68390 55.238 315 135 4 124 434 96 408 2.49e-119 354
MS.gene002006.t1 AT1G68380 52.294 327 146 6 113 434 71 392 1.03e-109 329
MS.gene002006.t1 AT1G73810 51.792 307 143 2 130 434 115 418 1.03e-109 330
MS.gene002006.t1 AT1G51770 50.160 313 127 3 123 434 81 365 1.01e-107 323
MS.gene002006.t1 AT1G10880 51.736 288 137 2 141 428 95 380 6.10e-107 322
MS.gene002006.t1 AT5G16170 48.265 317 145 3 136 434 94 409 6.46e-103 312
MS.gene002006.t1 AT4G31350 43.110 283 140 3 164 427 88 368 5.08e-74 236
MS.gene002006.t1 AT4G31350 43.110 283 140 3 164 427 88 368 5.08e-74 236
MS.gene002006.t1 AT4G31350 43.110 283 140 3 164 427 88 368 5.08e-74 236
MS.gene002006.t1 AT4G30060 44.755 286 134 4 165 429 109 391 5.06e-71 229
MS.gene002006.t1 AT4G30060 44.755 286 134 4 165 429 109 391 5.06e-71 229
MS.gene002006.t1 AT4G25870 40.979 327 165 8 124 427 59 380 5.75e-71 229
MS.gene002006.t1 AT4G31350 42.403 283 137 4 164 427 88 363 9.30e-69 223
MS.gene002006.t1 AT2G19160 42.403 283 141 3 165 427 106 386 5.20e-68 221
MS.gene002006.t1 AT2G19160 42.403 283 141 3 165 427 106 386 5.20e-68 221
MS.gene002006.t1 AT5G57270 42.958 284 139 4 165 427 98 379 1.84e-67 220
MS.gene002006.t1 AT5G57270 42.958 284 139 4 165 427 98 379 1.84e-67 220
MS.gene002006.t1 AT5G57270 42.958 284 139 4 165 427 98 379 1.84e-67 220
MS.gene002006.t1 AT5G57270 42.958 284 139 4 165 427 98 379 1.84e-67 220
MS.gene002006.t1 AT5G57270 42.958 284 139 4 165 427 98 379 1.84e-67 220
MS.gene002006.t1 AT3G21310 56.111 180 78 1 122 300 71 250 6.59e-64 207
MS.gene002006.t1 AT1G62305 39.604 303 136 10 164 425 68 364 1.08e-54 186
MS.gene002006.t1 AT3G52060 38.571 280 151 8 164 432 74 343 9.50e-53 180
MS.gene002006.t1 AT1G11940 39.597 298 134 10 164 420 73 365 5.77e-52 179
MS.gene002006.t1 AT5G25330 40.860 279 154 7 165 432 81 359 1.03e-50 176
MS.gene002006.t1 AT5G14550 39.357 249 129 5 164 393 64 309 1.87e-49 172
MS.gene002006.t1 AT5G14550 36.275 306 150 9 164 427 64 366 6.09e-49 171
MS.gene002006.t1 AT5G14550 36.393 305 149 9 164 426 64 365 7.89e-49 171
MS.gene002006.t1 AT1G62305 43.396 212 94 5 164 353 68 275 8.22e-47 164
MS.gene002006.t1 AT1G11940 47.753 178 86 4 164 337 73 247 2.17e-43 153
MS.gene002006.t1 AT1G62305 35.314 303 125 10 164 425 68 340 2.86e-39 145
MS.gene002006.t1 AT5G22070 34.437 302 151 11 165 432 71 359 3.95e-39 144
MS.gene002006.t1 AT4G32290 38.889 288 152 9 165 432 93 376 5.81e-39 144
MS.gene002006.t1 AT5G14550 34.812 293 145 10 164 427 64 339 7.48e-39 143

Find 128 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACTGTTCTGTTTGAATTA+AGG 0.235975 2.3:-76245121 None:intergenic
GGTGGTGGAGGAGGAGGAGG+AGG 0.258518 2.3:-76244164 None:intergenic
CTTATTCACAGGCTGTTTCT+TGG 0.263757 2.3:+76244703 MS.gene002006:intron
TGGGATATTGCGTCGATAAA+AGG 0.273998 2.3:-76244465 None:intergenic
TTATTCACAGGCTGTTTCTT+GGG 0.283167 2.3:+76244704 MS.gene002006:intron
TAGGGATAGTGGTATTTCTT+AGG 0.304256 2.3:-76244287 None:intergenic
GGGAACCATGGAACATATTC+AGG 0.311181 2.3:-76245100 None:intergenic
GAAGTCATATCTGAATTATA+TGG 0.351240 2.3:-76245248 None:intergenic
ACGGAAGAGGGAAAAGTATT+GGG 0.351893 2.3:-76245027 None:intergenic
AAGCAGGCTTACAGTATTTA+CGG 0.358219 2.3:-76245046 None:intergenic
GACTGTTCTGTTTGAATTAA+GGG 0.359001 2.3:-76245120 None:intergenic
CTTTACCCTTGTTGCCACTC+TGG 0.363568 2.3:+76244354 MS.gene002006:CDS
GTTGGAAGGTAGTGTTCATC+TGG 0.377430 2.3:-76245074 None:intergenic
TTGTCCCTCCCGTAGGTTGC+CGG 0.393192 2.3:-76245176 None:intergenic
TGTTGTTGTTGGGTTGTTGT+TGG 0.395852 2.3:-76244088 None:intergenic
TATGATGATCCTTCCCGTTA+TGG 0.399415 2.3:+76244891 MS.gene002006:CDS
TTTGCTGCTGGTGTCGTCAT+TGG 0.399698 2.3:+76243936 MS.gene002006:CDS
TACGGAAGAGGGAAAAGTAT+TGG 0.403770 2.3:-76245028 None:intergenic
CTCCCGTAGGTTGCCGGATG+AGG 0.404141 2.3:-76245170 None:intergenic
GCACTCTGGTTTGGTTAGAT+TGG 0.409919 2.3:+76243884 MS.gene002006:CDS
CAGAAGAAGAAGAAGGTTGT+TGG 0.421210 2.3:-76244031 None:intergenic
ATGCGTGGAGGAGGAGAAGA+AGG 0.422782 2.3:+76243831 MS.gene002006:CDS
TGCTGTTGCTGTTGCTTCGT+CGG 0.423883 2.3:-76243864 None:intergenic
AGGTACATGAAAGCGAGTTT+AGG 0.428382 2.3:-76244320 None:intergenic
CAGTGCTTAAGCTGAATATC+AGG 0.430715 2.3:-76244942 None:intergenic
TATTGCGGCTGTAGCGGCCT+CGG 0.431543 2.3:-76244914 None:intergenic
GTAGCGGCCTCGGCCATAAC+GGG 0.437948 2.3:-76244904 None:intergenic
GGTCCTCATCCGGCAACCTA+CGG 0.443893 2.3:+76245167 MS.gene002006:CDS
AGAGAAGGTGTGGGTGATGT+TGG 0.444842 2.3:-76244231 None:intergenic
TTTACCCTTGTTGCCACTCT+GGG 0.445219 2.3:+76244355 MS.gene002006:CDS
ACAGCAACAGCACTCTGGTT+TGG 0.447376 2.3:+76243875 MS.gene002006:CDS
GGATATAAATGTTGAAGAGA+TGG 0.459423 2.3:-76244400 None:intergenic
AAGCAAGGGCTCCAATGCAC+TGG 0.459653 2.3:-76245303 None:intergenic
GGGATATTGCGTCGATAAAA+GGG 0.460802 2.3:-76244464 None:intergenic
TGTAGCGGCCTCGGCCATAA+CGG 0.463805 2.3:-76244905 None:intergenic
CATATCCTCCTCTTCGGAGG+GGG 0.463862 2.3:-76244186 None:intergenic
AGAAGAAGAAGAAGGTTGTT+GGG 0.466492 2.3:-76244030 None:intergenic
TGTTGTTGGGTTGTTGTTGG+AGG 0.466863 2.3:-76244085 None:intergenic
CTCTGGGAGAGATTCTTTCA+AGG 0.470451 2.3:+76244371 MS.gene002006:CDS
ATCTGAATTATATGGACAAA+GGG 0.472207 2.3:-76245240 None:intergenic
CAAGTTTGATCCCAGTGCAT+TGG 0.474721 2.3:+76245292 MS.gene002006:CDS
GTTGTTGGGTTGTTGTTGGA+GGG 0.477667 2.3:-76244084 None:intergenic
GTCAATGCTCGGTCCTCATC+CGG 0.486872 2.3:+76245157 MS.gene002006:CDS
ATGGCGAGGATGCGTGGAGG+AGG 0.491011 2.3:+76243822 None:intergenic
GTCCTCATCCGGCAACCTAC+GGG 0.492307 2.3:+76245168 MS.gene002006:CDS
ATGAGATATCTGTAAACAGT+AGG 0.496818 2.3:-76244840 None:intergenic
GTACACGAGCGTAGGGATAG+TGG 0.503892 2.3:-76244298 None:intergenic
ATTTATATCCACGCTCCTCC+TGG 0.504909 2.3:+76244413 MS.gene002006:CDS
TATTCACAGGCTGTTTCTTG+GGG 0.505590 2.3:+76244705 MS.gene002006:intron
TCGACGCAATATCCCAAGTC+AGG 0.507097 2.3:+76244472 MS.gene002006:CDS
AGGAAGCCCTCCAGAAAAGT+TGG 0.507783 2.3:-76244259 None:intergenic
ACAGTAGGGAAGTTGTAGAC+TGG 0.509799 2.3:-76244825 None:intergenic
CAGTAGGGAAGTTGTAGACT+GGG 0.512385 2.3:-76244824 None:intergenic
AACATATCCTCCTCTTCGGA+GGG 0.513482 2.3:-76244188 None:intergenic
CTCCAACATATCCTCCTCTT+CGG 0.513489 2.3:-76244192 None:intergenic
TGTTCATCTGGGTAGCAAGC+AGG 0.515330 2.3:-76245062 None:intergenic
CAGAGTGGCAACAAGGGTAA+AGG 0.517032 2.3:-76244353 None:intergenic
GATCCTTCCCGTTATGGCCG+AGG 0.520104 2.3:+76244897 MS.gene002006:CDS
CTCCGAAGAGGAGGATATGT+TGG 0.522889 2.3:+76244190 MS.gene002006:CDS
CTTACAGTATTTACGGAAGA+GGG 0.523130 2.3:-76245039 None:intergenic
TCGCTTTCATGTACCTCACC+AGG 0.525613 2.3:+76244327 MS.gene002006:CDS
TGAAAAGTCGAGCAGTGCAT+TGG 0.525633 2.3:-76244766 None:intergenic
GATATAAATGTTGAAGAGAT+GGG 0.527961 2.3:-76244399 None:intergenic
GCGAGCAAAGAGGTAACAAA+TGG 0.530365 2.3:-76245270 None:intergenic
CTGATATTCAGCTTAAGCAC+TGG 0.530590 2.3:+76244943 MS.gene002006:CDS
CAGCTTAAGCACTGGCGCAA+AGG 0.531196 2.3:+76244951 MS.gene002006:CDS
GCTTACAGTATTTACGGAAG+AGG 0.538011 2.3:-76245040 None:intergenic
TGGAACATATTCAGGAAGGT+TGG 0.538336 2.3:-76245092 None:intergenic
GAACAGTCACATGGGTCGAC+TGG 0.550051 2.3:+76245135 MS.gene002006:CDS
GATGTTGGAAGGATGAAGAA+AGG 0.550089 2.3:-76244216 None:intergenic
AAATTAAAAGTTCATGACTT+CGG 0.551140 2.3:-76245336 None:intergenic
CAACAAGGGTAAAGGTCCCC+TGG 0.554561 2.3:-76244345 None:intergenic
GAAGCATATTGCGGCTGTAG+CGG 0.557435 2.3:-76244920 None:intergenic
GATTGGATGGCGAGGATGCG+TGG 0.560283 2.3:+76243816 None:intergenic
TTCTTGGGGAACAGTTACTC+TGG 0.561336 2.3:+76244719 MS.gene002006:CDS
ACCTTCCTGAATATGTTCCA+TGG 0.561364 2.3:+76245095 MS.gene002006:CDS
ACTGGCGCAAAGGCTCTCAA+TGG 0.562161 2.3:+76244961 MS.gene002006:CDS
AGCAAGGGCTCCAATGCACT+GGG 0.565315 2.3:-76245302 None:intergenic
AAGACATCAGAAGAAGAAGA+AGG 0.565316 2.3:-76244038 None:intergenic
AGTTATATTGTCCCTCCCGT+AGG 0.573521 2.3:-76245183 None:intergenic
CAACATATCCTCCTCTTCGG+AGG 0.575606 2.3:-76244189 None:intergenic
TTCGGAAGAGAGGTCAAGCA+AGG 0.577351 2.3:-76245318 None:intergenic
TATCTGAATTATATGGACAA+AGG 0.578382 2.3:-76245241 None:intergenic
TGGGTCGACTGGTCAATGCT+CGG 0.578827 2.3:+76245146 MS.gene002006:CDS
ATATCCTCCTCTTCGGAGGG+GGG 0.578887 2.3:-76244185 None:intergenic
GAAAAGTTGGTGGTCAGAGA+AGG 0.580866 2.3:-76244246 None:intergenic
CTCTGGCCGATGCGGAGAGG+CGG 0.581736 2.3:+76244736 MS.gene002006:CDS
CTCTCCCAGAGTGGCAACAA+GGG 0.584168 2.3:-76244359 None:intergenic
AGTTTAGGTACACGAGCGTA+GGG 0.587019 2.3:-76244305 None:intergenic
TAGTAGCCGCCTCTCCGCAT+CGG 0.587573 2.3:-76244742 None:intergenic
TGTTTGAATTAAGGGAACCA+TGG 0.588224 2.3:-76245112 None:intergenic
TGAGATATCTGTAAACAGTA+GGG 0.589706 2.3:-76244839 None:intergenic
ACATATTCAGGAAGGTTGGA+AGG 0.590150 2.3:-76245088 None:intergenic
TCTCTCCCAGAGTGGCAACA+AGG 0.591099 2.3:-76244360 None:intergenic
GTTGGTGGTCAGAGAAGGTG+TGG 0.594958 2.3:-76244241 None:intergenic
ATACAGGCTATAAGGAACAA+TGG 0.597495 2.3:+76245215 MS.gene002006:CDS
CTCATCCGGCAACCTACGGG+AGG 0.602306 2.3:+76245171 MS.gene002006:CDS
AAGGTGTGGGTGATGTTGGA+AGG 0.605998 2.3:-76244227 None:intergenic
GAGTTTAGGTACACGAGCGT+AGG 0.606394 2.3:-76244306 None:intergenic
AACAGTTACTCTGGCCGATG+CGG 0.608462 2.3:+76244728 MS.gene002006:CDS
AGTTCATGACTTCGGAAGAG+AGG 0.611942 2.3:-76245328 None:intergenic
ACATATCCTCCTCTTCGGAG+GGG 0.614099 2.3:-76244187 None:intergenic
GTGGTATTTCTTAGGAACCA+AGG 0.614170 2.3:-76244279 None:intergenic
AAATGTTGAAGAGATGGGAG+TGG 0.614619 2.3:-76244394 None:intergenic
AGGGTAAAGGTCCCCTGGTG+AGG 0.616195 2.3:-76244340 None:intergenic
AAGCCCTCCAGAAAAGTTGG+TGG 0.617230 2.3:-76244256 None:intergenic
AAGCAACAGCAACAGCACTC+TGG 0.619654 2.3:+76243870 MS.gene002006:CDS
CGGCCTCGGCCATAACGGGA+AGG 0.626778 2.3:-76244900 None:intergenic
TTGGAAGGTAGTGTTCATCT+GGG 0.631422 2.3:-76245073 None:intergenic
CGCTTTCATGTACCTCACCA+GGG 0.635577 2.3:+76244328 MS.gene002006:CDS
GAATATAACCAGGAGGAGCG+TGG 0.637995 2.3:-76244421 None:intergenic
CTATATAAACAGCAAGTGCA+CGG 0.643830 2.3:-76244995 None:intergenic
ATTCAAACAGAACAGTCACA+TGG 0.646779 2.3:+76245126 MS.gene002006:CDS
GAATATCAGGAAGCATATTG+CGG 0.649024 2.3:-76244929 None:intergenic
GGGAGGGACAATATAACTGT+CGG 0.656711 2.3:+76245188 MS.gene002006:CDS
GATCAAACTTGCGAGCAAAG+AGG 0.662138 2.3:-76245280 None:intergenic
TGGATGGCGAGGATGCGTGG+AGG 0.662304 2.3:+76243819 None:intergenic
ACCATGGAACATATTCAGGA+AGG 0.662805 2.3:-76245096 None:intergenic
TCGGAAGAGAGGTCAAGCAA+GGG 0.668978 2.3:-76245317 None:intergenic
TTCAAACAGAACAGTCACAT+GGG 0.669144 2.3:+76245127 MS.gene002006:CDS
TCATCCGGCAACCTACGGGA+GGG 0.670560 2.3:+76245172 MS.gene002006:CDS
TTACTCTGGCCGATGCGGAG+AGG 0.672407 2.3:+76244733 MS.gene002006:CDS
GTAGTGAATGTGAGAAGTTG+TGG 0.678670 2.3:-76243964 None:intergenic
TGAAAGAATCTCTCCCAGAG+TGG 0.689461 2.3:-76244368 None:intergenic
GCTTTCATGTACCTCACCAG+GGG 0.715038 2.3:+76244329 MS.gene002006:CDS
GAAACGTTGAGAATATAACC+AGG 0.715720 2.3:-76244431 None:intergenic
TTGGTGGTCAGAGAAGGTGT+GGG 0.735159 2.3:-76244240 None:intergenic
ACGTTGAGAATATAACCAGG+AGG 0.765757 2.3:-76244428 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAGTTTTGATGATTTAGT+GGG - chr2.3:76244633-76244652 None:intergenic 20.0%
!!! TTATAGTTTTGATGATTTAG+TGG - chr2.3:76244634-76244653 None:intergenic 20.0%
! AAGTTTCCTTGATAGAATTA+AGG - chr2.3:76244508-76244527 None:intergenic 25.0%
! AATGAATTGTTTGTACTTGT+AGG + chr2.3:76244543-76244562 MS.gene002006:intron 25.0%
! AGTTTCCTTGATAGAATTAA+GGG - chr2.3:76244507-76244526 None:intergenic 25.0%
! ATCTGAATTATATGGACAAA+GGG - chr2.3:76245243-76245262 None:intergenic 25.0%
! ATGAATTGTTTGTACTTGTA+GGG + chr2.3:76244544-76244563 MS.gene002006:intron 25.0%
! GAAGTCATATCTGAATTATA+TGG - chr2.3:76245251-76245270 None:intergenic 25.0%
! GATATAAATGTTGAAGAGAT+GGG - chr2.3:76244402-76244421 None:intergenic 25.0%
! GTTTATGATTCATTCATACA+TGG - chr2.3:76244582-76244601 None:intergenic 25.0%
! TATCTGAATTATATGGACAA+AGG - chr2.3:76245244-76245263 None:intergenic 25.0%
! TGAAAATATGAGTAAAGAGA+TGG - chr2.3:76244608-76244627 None:intergenic 25.0%
AATATGAGTAAAGAGATGGA+TGG - chr2.3:76244604-76244623 None:intergenic 30.0%
ATGAGATATCTGTAAACAGT+AGG - chr2.3:76244843-76244862 None:intergenic 30.0%
GACTGTTCTGTTTGAATTAA+GGG - chr2.3:76245123-76245142 None:intergenic 30.0%
GGATATAAATGTTGAAGAGA+TGG - chr2.3:76244403-76244422 None:intergenic 30.0%
GTTTCCTTGATAGAATTAAG+GGG - chr2.3:76244506-76244525 None:intergenic 30.0%
TGACTGTTCTGTTTGAATTA+AGG - chr2.3:76245124-76245143 None:intergenic 30.0%
TGAGATATCTGTAAACAGTA+GGG - chr2.3:76244842-76244861 None:intergenic 30.0%
TTTCCTTGATAGAATTAAGG+GGG - chr2.3:76244505-76244524 None:intergenic 30.0%
! TTGTTGTTGTTGTTGTTGTT+GGG - chr2.3:76244101-76244120 None:intergenic 30.0%
!! ATGAGTTTTGTCTTATTCAC+AGG + chr2.3:76244692-76244711 MS.gene002006:intron 30.0%
!!! TATAACTGTCGGTTTTATAC+AGG + chr2.3:76245199-76245218 MS.gene002006:CDS 30.0%
AAGACATCAGAAGAAGAAGA+AGG - chr2.3:76244041-76244060 None:intergenic 35.0%
AAGCAGGCTTACAGTATTTA+CGG - chr2.3:76245049-76245068 None:intergenic 35.0%
AGAAGAAGAAGAAGGTTGTT+GGG - chr2.3:76244033-76244052 None:intergenic 35.0%
ATACAGGCTATAAGGAACAA+TGG + chr2.3:76245215-76245234 MS.gene002006:CDS 35.0%
ATTCAAACAGAACAGTCACA+TGG + chr2.3:76245126-76245145 MS.gene002006:CDS 35.0%
CTATATAAACAGCAAGTGCA+CGG - chr2.3:76244998-76245017 None:intergenic 35.0%
CTTACAGTATTTACGGAAGA+GGG - chr2.3:76245042-76245061 None:intergenic 35.0%
GAAACGTTGAGAATATAACC+AGG - chr2.3:76244434-76244453 None:intergenic 35.0%
TGTTTGAATTAAGGGAACCA+TGG - chr2.3:76245115-76245134 None:intergenic 35.0%
TTCAAACAGAACAGTCACAT+GGG + chr2.3:76245127-76245146 MS.gene002006:CDS 35.0%
! GAATATCAGGAAGCATATTG+CGG - chr2.3:76244932-76244951 None:intergenic 35.0%
! GTTGTTGTTGTTGTTGTTGT+TGG - chr2.3:76244102-76244121 None:intergenic 35.0%
! TAGGGATAGTGGTATTTCTT+AGG - chr2.3:76244290-76244309 None:intergenic 35.0%
!! TCGGTTTTATACAGGCTATA+AGG + chr2.3:76245207-76245226 MS.gene002006:CDS 35.0%
!! TTATTCACAGGCTGTTTCTT+GGG + chr2.3:76244704-76244723 MS.gene002006:intron 35.0%
AAATGTTGAAGAGATGGGAG+TGG - chr2.3:76244397-76244416 None:intergenic 40.0%
ACATATTCAGGAAGGTTGGA+AGG - chr2.3:76245091-76245110 None:intergenic 40.0%
ACCATGGAACATATTCAGGA+AGG - chr2.3:76245099-76245118 None:intergenic 40.0%
ACCTTCCTGAATATGTTCCA+TGG + chr2.3:76245095-76245114 MS.gene002006:CDS 40.0%
ACGTTGAGAATATAACCAGG+AGG - chr2.3:76244431-76244450 None:intergenic 40.0%
AGGTACATGAAAGCGAGTTT+AGG - chr2.3:76244323-76244342 None:intergenic 40.0%
CAGAAGAAGAAGAAGGTTGT+TGG - chr2.3:76244034-76244053 None:intergenic 40.0%
CAGTGCTTAAGCTGAATATC+AGG - chr2.3:76244945-76244964 None:intergenic 40.0%
CATCCCCCTTAATTCTATCA+AGG + chr2.3:76244499-76244518 MS.gene002006:intron 40.0%
CTGATATTCAGCTTAAGCAC+TGG + chr2.3:76244943-76244962 MS.gene002006:CDS 40.0%
GATGTTGGAAGGATGAAGAA+AGG - chr2.3:76244219-76244238 None:intergenic 40.0%
GCTTACAGTATTTACGGAAG+AGG - chr2.3:76245043-76245062 None:intergenic 40.0%
GTAGTGAATGTGAGAAGTTG+TGG - chr2.3:76243967-76243986 None:intergenic 40.0%
GTGGTATTTCTTAGGAACCA+AGG - chr2.3:76244282-76244301 None:intergenic 40.0%
TATGATGATCCTTCCCGTTA+TGG + chr2.3:76244891-76244910 MS.gene002006:CDS 40.0%
TGGAACATATTCAGGAAGGT+TGG - chr2.3:76245095-76245114 None:intergenic 40.0%
TTGGAAGGTAGTGTTCATCT+GGG - chr2.3:76245076-76245095 None:intergenic 40.0%
! GGGATATTGCGTCGATAAAA+GGG - chr2.3:76244467-76244486 None:intergenic 40.0%
! TACGGAAGAGGGAAAAGTAT+TGG - chr2.3:76245031-76245050 None:intergenic 40.0%
! TGGGATATTGCGTCGATAAA+AGG - chr2.3:76244468-76244487 None:intergenic 40.0%
! TGTTGTTGTTGGGTTGTTGT+TGG - chr2.3:76244091-76244110 None:intergenic 40.0%
!! ACGGAAGAGGGAAAAGTATT+GGG - chr2.3:76245030-76245049 None:intergenic 40.0%
!! CTTATTCACAGGCTGTTTCT+TGG + chr2.3:76244703-76244722 MS.gene002006:intron 40.0%
!! TATTCACAGGCTGTTTCTTG+GGG + chr2.3:76244705-76244724 MS.gene002006:intron 40.0%
!!! TTGTTGCTTGTTTTTGCTGC+TGG + chr2.3:76243924-76243943 MS.gene002006:CDS 40.0%
AACATATCCTCCTCTTCGGA+GGG - chr2.3:76244191-76244210 None:intergenic 45.0%
ACAGTAGGGAAGTTGTAGAC+TGG - chr2.3:76244828-76244847 None:intergenic 45.0%
AGTTATATTGTCCCTCCCGT+AGG - chr2.3:76245186-76245205 None:intergenic 45.0%
AGTTCATGACTTCGGAAGAG+AGG - chr2.3:76245331-76245350 None:intergenic 45.0%
AGTTTAGGTACACGAGCGTA+GGG - chr2.3:76244308-76244327 None:intergenic 45.0%
ATTTATATCCACGCTCCTCC+TGG + chr2.3:76244413-76244432 MS.gene002006:CDS 45.0%
CAAGTTTGATCCCAGTGCAT+TGG + chr2.3:76245292-76245311 MS.gene002006:CDS 45.0%
CAGTAGGGAAGTTGTAGACT+GGG - chr2.3:76244827-76244846 None:intergenic 45.0%
CTCCAACATATCCTCCTCTT+CGG - chr2.3:76244195-76244214 None:intergenic 45.0%
GATCAAACTTGCGAGCAAAG+AGG - chr2.3:76245283-76245302 None:intergenic 45.0%
GCGAGCAAAGAGGTAACAAA+TGG - chr2.3:76245273-76245292 None:intergenic 45.0%
GGGAACCATGGAACATATTC+AGG - chr2.3:76245103-76245122 None:intergenic 45.0%
GGGAGGGACAATATAACTGT+CGG + chr2.3:76245188-76245207 MS.gene002006:CDS 45.0%
GTTGGAAGGTAGTGTTCATC+TGG - chr2.3:76245077-76245096 None:intergenic 45.0%
TGAAAAGTCGAGCAGTGCAT+TGG - chr2.3:76244769-76244788 None:intergenic 45.0%
TGAAAGAATCTCTCCCAGAG+TGG - chr2.3:76244371-76244390 None:intergenic 45.0%
TTCTTGGGGAACAGTTACTC+TGG + chr2.3:76244719-76244738 MS.gene002006:CDS 45.0%
TTTACCCTTGTTGCCACTCT+GGG + chr2.3:76244355-76244374 MS.gene002006:CDS 45.0%
! CTCTGGGAGAGATTCTTTCA+AGG + chr2.3:76244371-76244390 MS.gene002006:CDS 45.0%
! GTTGTTGGGTTGTTGTTGGA+GGG - chr2.3:76244087-76244106 None:intergenic 45.0%
! TCTCTGACCACCAACTTTTC+TGG + chr2.3:76244249-76244268 MS.gene002006:CDS 45.0%
! TGACCACCAACTTTTCTGGA+GGG + chr2.3:76244253-76244272 MS.gene002006:CDS 45.0%
! TGTTGTTGGGTTGTTGTTGG+AGG - chr2.3:76244088-76244107 None:intergenic 45.0%
!! GAAAAGTTGGTGGTCAGAGA+AGG - chr2.3:76244249-76244268 None:intergenic 45.0%
!! GCACTCTGGTTTGGTTAGAT+TGG + chr2.3:76243884-76243903 MS.gene002006:CDS 45.0%
AACAGTTACTCTGGCCGATG+CGG + chr2.3:76244728-76244747 MS.gene002006:CDS 50.0%
AAGCAACAGCAACAGCACTC+TGG + chr2.3:76243870-76243889 MS.gene002006:CDS 50.0%
AAGCCCTCCAGAAAAGTTGG+TGG - chr2.3:76244259-76244278 None:intergenic 50.0%
AAGGTGTGGGTGATGTTGGA+AGG - chr2.3:76244230-76244249 None:intergenic 50.0%
ACAGCAACAGCACTCTGGTT+TGG + chr2.3:76243875-76243894 MS.gene002006:CDS 50.0%
ACATATCCTCCTCTTCGGAG+GGG - chr2.3:76244190-76244209 None:intergenic 50.0%
AGGAAGCCCTCCAGAAAAGT+TGG - chr2.3:76244262-76244281 None:intergenic 50.0%
CAACATATCCTCCTCTTCGG+AGG - chr2.3:76244192-76244211 None:intergenic 50.0%
CAGAGTGGCAACAAGGGTAA+AGG - chr2.3:76244356-76244375 None:intergenic 50.0%
CGCTTTCATGTACCTCACCA+GGG + chr2.3:76244328-76244347 MS.gene002006:CDS 50.0%
CTCCGAAGAGGAGGATATGT+TGG + chr2.3:76244190-76244209 MS.gene002006:CDS 50.0%
CTTTACCCTTGTTGCCACTC+TGG + chr2.3:76244354-76244373 MS.gene002006:CDS 50.0%
GAAGCATATTGCGGCTGTAG+CGG - chr2.3:76244923-76244942 None:intergenic 50.0%
GAATATAACCAGGAGGAGCG+TGG - chr2.3:76244424-76244443 None:intergenic 50.0%
GAGTTTAGGTACACGAGCGT+AGG - chr2.3:76244309-76244328 None:intergenic 50.0%
GCTTTCATGTACCTCACCAG+GGG + chr2.3:76244329-76244348 MS.gene002006:CDS 50.0%
TCGACGCAATATCCCAAGTC+AGG + chr2.3:76244472-76244491 MS.gene002006:CDS 50.0%
TCGCTTTCATGTACCTCACC+AGG + chr2.3:76244327-76244346 MS.gene002006:CDS 50.0%
TCGGAAGAGAGGTCAAGCAA+GGG - chr2.3:76245320-76245339 None:intergenic 50.0%
TGTTCATCTGGGTAGCAAGC+AGG - chr2.3:76245065-76245084 None:intergenic 50.0%
TTCGGAAGAGAGGTCAAGCA+AGG - chr2.3:76245321-76245340 None:intergenic 50.0%
! AGAGAAGGTGTGGGTGATGT+TGG - chr2.3:76244234-76244253 None:intergenic 50.0%
! CTGACCACCAACTTTTCTGG+AGG + chr2.3:76244252-76244271 MS.gene002006:CDS 50.0%
! TGCTGTTGCTGTTGCTTCGT+CGG - chr2.3:76243867-76243886 None:intergenic 50.0%
! TTGGTGGTCAGAGAAGGTGT+GGG - chr2.3:76244243-76244262 None:intergenic 50.0%
!! ACTTTTCTGGAGGGCTTCCT+TGG + chr2.3:76244262-76244281 MS.gene002006:CDS 50.0%
!! TTTGCTGCTGGTGTCGTCAT+TGG + chr2.3:76243936-76243955 MS.gene002006:CDS 50.0%
AAGCAAGGGCTCCAATGCAC+TGG - chr2.3:76245306-76245325 None:intergenic 55.0%
ACTGGCGCAAAGGCTCTCAA+TGG + chr2.3:76244961-76244980 MS.gene002006:CDS 55.0%
AGCAAGGGCTCCAATGCACT+GGG - chr2.3:76245305-76245324 None:intergenic 55.0%
AGGGGGATGCATACCTGACT+TGG - chr2.3:76244488-76244507 None:intergenic 55.0%
ATATCCTCCTCTTCGGAGGG+GGG - chr2.3:76244188-76244207 None:intergenic 55.0%
ATGCGTGGAGGAGGAGAAGA+AGG + chr2.3:76243831-76243850 MS.gene002006:CDS 55.0%
CAACAAGGGTAAAGGTCCCC+TGG - chr2.3:76244348-76244367 None:intergenic 55.0%
CATATCCTCCTCTTCGGAGG+GGG - chr2.3:76244189-76244208 None:intergenic 55.0%
CTCTCCCAGAGTGGCAACAA+GGG - chr2.3:76244362-76244381 None:intergenic 55.0%
GAACAGTCACATGGGTCGAC+TGG + chr2.3:76245135-76245154 MS.gene002006:CDS 55.0%
GGGGGATGCATACCTGACTT+GGG - chr2.3:76244487-76244506 None:intergenic 55.0%
GTACACGAGCGTAGGGATAG+TGG - chr2.3:76244301-76244320 None:intergenic 55.0%
GTCAATGCTCGGTCCTCATC+CGG + chr2.3:76245157-76245176 MS.gene002006:CDS 55.0%
TCTCTCCCAGAGTGGCAACA+AGG - chr2.3:76244363-76244382 None:intergenic 55.0%
! TGGGTCGACTGGTCAATGCT+CGG + chr2.3:76245146-76245165 MS.gene002006:CDS 55.0%
!! CAGCTTAAGCACTGGCGCAA+AGG + chr2.3:76244951-76244970 MS.gene002006:CDS 55.0%
!! GTTGGTGGTCAGAGAAGGTG+TGG - chr2.3:76244244-76244263 None:intergenic 55.0%
AGGGTAAAGGTCCCCTGGTG+AGG - chr2.3:76244343-76244362 None:intergenic 60.0%
GATCCTTCCCGTTATGGCCG+AGG + chr2.3:76244897-76244916 MS.gene002006:CDS 60.0%
GGTCCTCATCCGGCAACCTA+CGG + chr2.3:76245167-76245186 MS.gene002006:CDS 60.0%
GTCCTCATCCGGCAACCTAC+GGG + chr2.3:76245168-76245187 MS.gene002006:CDS 60.0%
TAGTAGCCGCCTCTCCGCAT+CGG - chr2.3:76244745-76244764 None:intergenic 60.0%
TATTGCGGCTGTAGCGGCCT+CGG - chr2.3:76244917-76244936 None:intergenic 60.0%
TCATCCGGCAACCTACGGGA+GGG + chr2.3:76245172-76245191 MS.gene002006:CDS 60.0%
TGTAGCGGCCTCGGCCATAA+CGG - chr2.3:76244908-76244927 None:intergenic 60.0%
TTACTCTGGCCGATGCGGAG+AGG + chr2.3:76244733-76244752 MS.gene002006:CDS 60.0%
TTGTCCCTCCCGTAGGTTGC+CGG - chr2.3:76245179-76245198 None:intergenic 60.0%
CTCATCCGGCAACCTACGGG+AGG + chr2.3:76245171-76245190 MS.gene002006:CDS 65.0%
CTCCCGTAGGTTGCCGGATG+AGG - chr2.3:76245173-76245192 None:intergenic 65.0%
GGAGGAGGAGGAGGAGAAGG+AGG - chr2.3:76244152-76244171 None:intergenic 65.0%
GGAGGAGGAGGAGGAGGAGA+AGG - chr2.3:76244155-76244174 None:intergenic 65.0%
GTAGCGGCCTCGGCCATAAC+GGG - chr2.3:76244907-76244926 None:intergenic 65.0%
ACCACCCCCCTCCGAAGAGG+AGG + chr2.3:76244181-76244200 MS.gene002006:CDS 70.0%
CTCTGGCCGATGCGGAGAGG+CGG + chr2.3:76244736-76244755 MS.gene002006:CDS 70.0%
GGAGGAGGAGGAGGAGGAGG+AGG - chr2.3:76244158-76244177 None:intergenic 70.0%
GGTGGAGGAGGAGGAGGAGG+AGG - chr2.3:76244164-76244183 None:intergenic 70.0%
TCCACCACCCCCCTCCGAAG+AGG + chr2.3:76244178-76244197 MS.gene002006:CDS 70.0%
TCCTCCTCTTCGGAGGGGGG+TGG - chr2.3:76244185-76244204 None:intergenic 70.0%
TCCTCTTCGGAGGGGGGTGG+TGG - chr2.3:76244182-76244201 None:intergenic 70.0%
! CGGCCTCGGCCATAACGGGA+AGG - chr2.3:76244903-76244922 None:intergenic 70.0%
! TCTTCGGAGGGGGGTGGTGG+AGG - chr2.3:76244179-76244198 None:intergenic 70.0%
!! GGTGGTGGAGGAGGAGGAGG+AGG - chr2.3:76244167-76244186 None:intergenic 70.0%
!! GAGGGGGGTGGTGGAGGAGG+AGG - chr2.3:76244173-76244192 None:intergenic 75.0%
!! GGGGGTGGTGGAGGAGGAGG+AGG - chr2.3:76244170-76244189 None:intergenic 75.0%
!! TCGGAGGGGGGTGGTGGAGG+AGG - chr2.3:76244176-76244195 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 76243831 76245355 76243831 ID=MS.gene002006
chr2.3 mRNA 76243831 76245355 76243831 ID=MS.gene002006.t1;Parent=MS.gene002006
chr2.3 exon 76243831 76244493 76243831 ID=MS.gene002006.t1.exon1;Parent=MS.gene002006.t1
chr2.3 CDS 76243831 76244493 76243831 ID=cds.MS.gene002006.t1;Parent=MS.gene002006.t1
chr2.3 exon 76244714 76245355 76244714 ID=MS.gene002006.t1.exon2;Parent=MS.gene002006.t1
chr2.3 CDS 76244714 76245355 76244714 ID=cds.MS.gene002006.t1;Parent=MS.gene002006.t1
Gene Sequence

>MS.gene002006

ATGCGTGGAGGAGGAGAAGAAGGAGACAGAGATCCGACGAAGCAACAGCAACAGCACTCTGGTTTGGTTAGATTGGTACAACAACTTGTTACATTGTTGCTTGTTTTTGCTGCTGGTGTCGTCATTGGTTTAACCACAACTTCTCACATTCACTACTTCAATACAAGTCACAACAATAATAACTATCTTCATTTCATTTCCCAACAACCTTCTTCTTCTTCTGATGTCTTCAATCTCGATACTACTATTCACACCCTCCAACAACAACCCAACAACAACAACAACAACAACTGTAACTGTAATTGTACAATCATTGAACCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCACCACCCCCCTCCGAAGAGGAGGATATGTTGGAGTCCTTTCTTCATCCTTCCAACATCACCCACACCTTCTCTGACCACCAACTTTTCTGGAGGGCTTCCTTGGTTCCTAAGAAATACCACTATCCCTACGCTCGTGTACCTAAACTCGCTTTCATGTACCTCACCAGGGGACCTTTACCCTTGTTGCCACTCTGGGAGAGATTCTTTCAAGGCCACTCCCATCTCTTCAACATTTATATCCACGCTCCTCCTGGTTATATTCTCAACGTTTCTGATTCTTCTCCCTTTTATCGACGCAATATCCCAAGTCAGGTATGCATCCCCCTTAATTCTATCAAGGAAACTTCTTTGCTTTTATTTAAATGAATTGTTTGTACTTGTAGGGCTGTAGTATTCACCATGTATGAATGAATCATAAACCATCCATCTCTTTACTCATATTTTCACTCCCACTAAATCATCAAAACTATAATATTAATTTATGTTATTTGTAGAGAGTATTCTATTCTTATGAGTTTTGTCTTATTCACAGGCTGTTTCTTGGGGAACAGTTACTCTGGCCGATGCGGAGAGGCGGCTACTAGCCAATGCACTGCTCGACTTTTCAAATGAGCGCTTTGTTCTACTCTCAGAGAGTTGCATCCCAGTCTACAACTTCCCTACTGTTTACAGATATCTCATTGATTCTGCACACAGCTTTGTTGAGTCATATGATGATCCTTCCCGTTATGGCCGAGGCCGCTACAGCCGCAATATGCTTCCTGATATTCAGCTTAAGCACTGGCGCAAAGGCTCTCAATGGTTCGAACTCAACCGTGCACTTGCTGTTTATATAGTCTCTGACACCCAATACTTTTCCCTCTTCCGTAAATACTGTAAGCCTGCTTGCTACCCAGATGAACACTACCTTCCAACCTTCCTGAATATGTTCCATGGTTCCCTTAATTCAAACAGAACAGTCACATGGGTCGACTGGTCAATGCTCGGTCCTCATCCGGCAACCTACGGGAGGGACAATATAACTGTCGGTTTTATACAGGCTATAAGGAACAATGGATCCCTTTGTCCATATAATTCAGATATGACTTCCATTTGTTACCTCTTTGCTCGCAAGTTTGATCCCAGTGCATTGGAGCCCTTGCTTGACCTCTCTTCCGAAGTCATGAACTTTTAA
Protein sequence

>MS.gene002006.t1

MRGGGEEGDRDPTKQQQQHSGLVRLVQQLVTLLLVFAAGVVIGLTTTSHIHYFNTSHNNNNYLHFISQQPSSSSDVFNLDTTIHTLQQQPNNNNNNNCNCNCTIIEPPSPPPPPPPPPPPSEEEDMLESFLHPSNITHTFSDHQLFWRASLVPKKYHYPYARVPKLAFMYLTRGPLPLLPLWERFFQGHSHLFNIYIHAPPGYILNVSDSSPFYRRNIPSQAVSWGTVTLADAERRLLANALLDFSNERFVLLSESCIPVYNFPTVYRYLIDSAHSFVESYDDPSRYGRGRYSRNMLPDIQLKHWRKGSQWFELNRALAVYIVSDTQYFSLFRKYCKPACYPDEHYLPTFLNMFHGSLNSNRTVTWVDWSMLGPHPATYGRDNITVGFIQAIRNNGSLCPYNSDMTSICYLFARKFDPSALEPLLDLSSEVMNF