AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00579

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00579.t1 MTR_2g005350 96.796 437 4 5 1 429 4 438 0.0 852
MS.gene00579.t1 MTR_1g016880 56.918 318 134 3 114 429 60 376 5.13e-131 382
MS.gene00579.t1 MTR_1g110290 52.812 320 148 2 111 429 76 393 8.96e-122 360
MS.gene00579.t1 MTR_5g055480 44.527 402 187 4 28 429 25 390 4.27e-121 357
MS.gene00579.t1 MTR_5g006930 45.758 389 193 4 46 429 11 386 9.14e-120 354
MS.gene00579.t1 MTR_8g015500 53.770 305 139 2 125 428 109 412 1.21e-117 350
MS.gene00579.t1 MTR_5g006920 44.175 412 198 5 31 429 29 421 2.53e-117 349
MS.gene00579.t1 MTR_6g083830 52.427 309 145 2 122 429 112 419 1.82e-116 347
MS.gene00579.t1 MTR_3g104840 47.619 315 145 4 116 429 98 393 1.05e-100 306
MS.gene00579.t1 MTR_3g108740 41.824 318 162 5 126 422 58 373 5.69e-75 239
MS.gene00579.t1 MTR_1g009960 43.000 300 149 3 150 429 102 399 6.13e-73 234
MS.gene00579.t1 MTR_4g127550 41.667 288 147 3 156 424 104 389 5.10e-70 227
MS.gene00579.t1 MTR_1g009960 46.721 244 122 2 150 387 102 343 1.86e-68 222
MS.gene00579.t1 MTR_2g037600 43.007 286 141 4 159 424 105 388 2.83e-68 222
MS.gene00579.t1 MTR_2g037620 41.754 285 145 3 159 424 97 379 1.68e-67 220
MS.gene00579.t1 MTR_2g024120 39.145 304 138 10 159 420 61 359 4.27e-51 177
MS.gene00579.t1 MTR_8g094180 36.624 314 144 11 159 423 55 362 1.75e-48 169
MS.gene00579.t1 MTR_3g106930 37.179 312 180 8 128 427 67 374 1.48e-46 164
MS.gene00579.t1 MTR_8g094180 37.879 264 127 8 159 389 55 314 4.74e-45 159
MS.gene00579.t1 MTR_1g048320 38.062 289 148 10 159 427 64 341 4.79e-41 149
MS.gene00579.t1 MTR_2g087610 34.768 302 149 10 160 427 78 365 9.29e-40 146
MS.gene00579.t1 MTR_1g031060 34.364 291 158 8 159 427 80 359 1.54e-33 129
MS.gene00579.t1 MTR_1g031080 35.223 247 130 7 202 427 52 289 1.40e-31 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00579.t1 AT1G10280 57.343 429 163 5 2 429 3 412 2.13e-180 509
MS.gene00579.t1 AT5G11730 55.960 302 132 1 128 429 86 386 6.52e-126 370
MS.gene00579.t1 AT5G25970 54.430 316 142 2 114 428 72 386 1.05e-124 367
MS.gene00579.t1 AT5G25970 54.430 316 142 2 114 428 72 386 1.05e-124 367
MS.gene00579.t1 AT5G25970 54.430 316 142 2 114 428 72 386 1.05e-124 367
MS.gene00579.t1 AT1G51770 54.952 313 139 2 118 429 81 392 2.96e-124 366
MS.gene00579.t1 AT3G21310 54.777 314 140 2 117 429 71 383 1.03e-122 362
MS.gene00579.t1 AT3G21310 54.777 314 140 2 117 429 71 383 1.03e-122 362
MS.gene00579.t1 AT1G68390 55.238 315 135 4 119 429 96 408 1.99e-119 354
MS.gene00579.t1 AT1G73810 51.792 307 143 2 125 429 115 418 1.02e-109 330
MS.gene00579.t1 AT1G68380 52.294 327 146 6 108 429 71 392 1.38e-109 328
MS.gene00579.t1 AT1G51770 50.160 313 127 3 118 429 81 365 9.56e-108 323
MS.gene00579.t1 AT1G10880 51.736 288 137 2 136 423 95 380 3.14e-107 322
MS.gene00579.t1 AT5G16170 48.265 317 145 3 131 429 94 409 6.51e-103 312
MS.gene00579.t1 AT4G31350 43.110 283 140 3 159 422 88 368 5.50e-74 236
MS.gene00579.t1 AT4G31350 43.110 283 140 3 159 422 88 368 5.50e-74 236
MS.gene00579.t1 AT4G31350 43.110 283 140 3 159 422 88 368 5.50e-74 236
MS.gene00579.t1 AT4G30060 44.406 286 135 4 160 424 109 391 3.32e-71 230
MS.gene00579.t1 AT4G30060 44.406 286 135 4 160 424 109 391 3.32e-71 230
MS.gene00579.t1 AT4G25870 40.979 327 165 8 119 422 59 380 5.43e-71 229
MS.gene00579.t1 AT4G31350 42.403 283 137 4 159 422 88 363 9.89e-69 223
MS.gene00579.t1 AT2G19160 42.403 283 141 3 160 422 106 386 5.13e-68 221
MS.gene00579.t1 AT2G19160 42.403 283 141 3 160 422 106 386 5.13e-68 221
MS.gene00579.t1 AT5G57270 42.958 284 139 4 160 422 98 379 2.14e-67 219
MS.gene00579.t1 AT5G57270 42.958 284 139 4 160 422 98 379 2.14e-67 219
MS.gene00579.t1 AT5G57270 42.958 284 139 4 160 422 98 379 2.14e-67 219
MS.gene00579.t1 AT5G57270 42.958 284 139 4 160 422 98 379 2.14e-67 219
MS.gene00579.t1 AT5G57270 42.958 284 139 4 160 422 98 379 2.14e-67 219
MS.gene00579.t1 AT3G21310 56.111 180 78 1 117 295 71 250 5.40e-64 207
MS.gene00579.t1 AT1G62305 39.604 303 136 10 159 420 68 364 9.90e-55 186
MS.gene00579.t1 AT3G52060 38.571 280 151 8 159 427 74 343 7.41e-53 180
MS.gene00579.t1 AT1G11940 39.597 298 134 10 159 415 73 365 5.17e-52 179
MS.gene00579.t1 AT5G25330 40.860 279 154 7 160 427 81 359 6.55e-51 176
MS.gene00579.t1 AT5G14550 39.357 249 129 5 159 388 64 309 1.50e-49 172
MS.gene00579.t1 AT5G14550 36.156 307 151 9 159 423 64 367 5.54e-49 171
MS.gene00579.t1 AT5G14550 36.393 305 149 9 159 421 64 365 7.41e-49 171
MS.gene00579.t1 AT1G62305 43.396 212 94 5 159 348 68 275 7.51e-47 164
MS.gene00579.t1 AT1G11940 47.753 178 86 4 159 332 73 247 1.91e-43 153
MS.gene00579.t1 AT1G62305 35.314 303 125 10 159 420 68 340 2.62e-39 145
MS.gene00579.t1 AT5G22070 34.437 302 151 11 160 427 71 359 3.44e-39 144
MS.gene00579.t1 AT4G32290 38.889 288 152 9 160 427 93 376 5.33e-39 144
MS.gene00579.t1 AT5G14550 34.694 294 146 10 159 423 64 340 6.52e-39 143

Find 130 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACTGTTCTGTTTGAATTA+AGG 0.235975 2.1:-76218163 None:intergenic
GGTGGTGGAGGAGGAGGAGG+AGG 0.258518 2.1:-76217208 None:intergenic
CTTATTCACAGGCTGTTTCT+TGG 0.263757 2.1:+76217745 MS.gene00579:intron
TGGGATATTGCGTCGATAAA+AGG 0.273998 2.1:-76217509 None:intergenic
TTATTCACAGGCTGTTTCTT+GGG 0.283167 2.1:+76217746 MS.gene00579:intron
TAGGGATAGTGGTATTTCTT+AGG 0.304256 2.1:-76217331 None:intergenic
GGGAACCATGGAACATATTC+AGG 0.311181 2.1:-76218142 None:intergenic
GAAGTCATATCTGAATTATA+TGG 0.351240 2.1:-76218290 None:intergenic
ACGGAAGAGGGAAAAGTATT+GGG 0.351893 2.1:-76218069 None:intergenic
AAGCAGGCTTACAGTATTTA+CGG 0.358219 2.1:-76218088 None:intergenic
GACTGTTCTGTTTGAATTAA+GGG 0.359001 2.1:-76218162 None:intergenic
CTTTACCCTTGTTGCCACTC+TGG 0.363568 2.1:+76217398 MS.gene00579:CDS
GTTGGAAGGTAGTGTTCATC+TGG 0.377430 2.1:-76218116 None:intergenic
AGTTGTTGTTGGGTTGTTGT+TGG 0.389048 2.1:-76217147 None:intergenic
TTGTCCCTCCCGTAGGTTGC+CGG 0.393192 2.1:-76218218 None:intergenic
TATGATGATCCTTCCCGTTA+TGG 0.399415 2.1:+76217933 MS.gene00579:CDS
TTTGCTGCTGGTGTCGTCAT+TGG 0.399698 2.1:+76216995 MS.gene00579:CDS
TACGGAAGAGGGAAAAGTAT+TGG 0.403770 2.1:-76218070 None:intergenic
CTCCCGTAGGTTGCCGGATG+AGG 0.404141 2.1:-76218212 None:intergenic
GCACTCTGGTTTGGTTAGAT+TGG 0.409919 2.1:+76216943 MS.gene00579:CDS
CAGAAGAAGAAGAAGGTTGT+TGG 0.421210 2.1:-76217090 None:intergenic
ATGCGTGGAGGAGGAGAAGA+AGG 0.422782 2.1:+76216890 MS.gene00579:CDS
TGCTGTTGCTGTTGCTTCGT+CGG 0.423883 2.1:-76216923 None:intergenic
AGGTACATGAAAGCGAGTTT+AGG 0.428382 2.1:-76217364 None:intergenic
CAGTGCTTAAGCTGAATATC+AGG 0.430715 2.1:-76217984 None:intergenic
TATTGCGGCTGTAGCGGCCT+CGG 0.431543 2.1:-76217956 None:intergenic
GTAGCGGCCTCGGCCATAAC+GGG 0.437948 2.1:-76217946 None:intergenic
GGTCCTCATCCGGCAACCTA+CGG 0.443893 2.1:+76218209 MS.gene00579:CDS
AGAGAAGGTGTGGGTGATGT+TGG 0.444842 2.1:-76217275 None:intergenic
TTTACCCTTGTTGCCACTCT+GGG 0.445219 2.1:+76217399 MS.gene00579:CDS
ACAGCAACAGCACTCTGGTT+TGG 0.447376 2.1:+76216934 MS.gene00579:CDS
ATTACAGTTACAGTTGTTGT+TGG 0.448959 2.1:-76217158 None:intergenic
TGTTGTTGGGTTGTTGTTGG+AGG 0.459141 2.1:-76217144 None:intergenic
GGATATAAATGTTGAAGAGA+TGG 0.459423 2.1:-76217444 None:intergenic
AAGCAAGGGCTCCAATGCAC+TGG 0.459653 2.1:-76218345 None:intergenic
GGGATATTGCGTCGATAAAA+GGG 0.460802 2.1:-76217508 None:intergenic
TGTAGCGGCCTCGGCCATAA+CGG 0.463805 2.1:-76217947 None:intergenic
CATATCCTCCTCTTCGGAGG+GGG 0.463862 2.1:-76217230 None:intergenic
AGAAGAAGAAGAAGGTTGTT+GGG 0.466492 2.1:-76217089 None:intergenic
CTCTGGGAGAGATTCTTTCA+AGG 0.470451 2.1:+76217415 MS.gene00579:CDS
ATCTGAATTATATGGACAAA+GGG 0.472207 2.1:-76218282 None:intergenic
CAAGTTTGATCCCAGTGCAT+TGG 0.474721 2.1:+76218334 MS.gene00579:CDS
GTTGTTGGGTTGTTGTTGGA+GGG 0.481318 2.1:-76217143 None:intergenic
GTCAATGCTCGGTCCTCATC+CGG 0.486872 2.1:+76218199 MS.gene00579:CDS
ATGGCGAGGATGCGTGGAGG+AGG 0.491011 2.1:+76216881 None:intergenic
GTCCTCATCCGGCAACCTAC+GGG 0.492307 2.1:+76218210 MS.gene00579:CDS
ATGAGATATCTGTAAACAGT+AGG 0.496818 2.1:-76217882 None:intergenic
TTACAGTTACAGTTGTTGTT+GGG 0.498380 2.1:-76217157 None:intergenic
GTACACGAGCGTAGGGATAG+TGG 0.503892 2.1:-76217342 None:intergenic
ATTTATATCCACGCTCCTCC+TGG 0.504909 2.1:+76217457 MS.gene00579:CDS
TATTCACAGGCTGTTTCTTG+GGG 0.505590 2.1:+76217747 MS.gene00579:intron
TCGACGCAATATCCCAAGTC+AGG 0.507097 2.1:+76217516 MS.gene00579:CDS
AGGAAGCCCTCCAGAAAAGT+TGG 0.507783 2.1:-76217303 None:intergenic
ACAGTAGGGAAGTTGTAGAC+TGG 0.509799 2.1:-76217867 None:intergenic
CAGTAGGGAAGTTGTAGACT+GGG 0.512385 2.1:-76217866 None:intergenic
AACATATCCTCCTCTTCGGA+GGG 0.513482 2.1:-76217232 None:intergenic
CTCCAACATATCCTCCTCTT+CGG 0.513489 2.1:-76217236 None:intergenic
TGTTCATCTGGGTAGCAAGC+AGG 0.515330 2.1:-76218104 None:intergenic
CAGAGTGGCAACAAGGGTAA+AGG 0.517032 2.1:-76217397 None:intergenic
GATCCTTCCCGTTATGGCCG+AGG 0.520104 2.1:+76217939 MS.gene00579:CDS
CTCCGAAGAGGAGGATATGT+TGG 0.522889 2.1:+76217234 MS.gene00579:CDS
CTTACAGTATTTACGGAAGA+GGG 0.523130 2.1:-76218081 None:intergenic
TCGCTTTCATGTACCTCACC+AGG 0.525613 2.1:+76217371 MS.gene00579:CDS
TGAAAAGTCGAGCAGTGCAT+TGG 0.525633 2.1:-76217808 None:intergenic
GATATAAATGTTGAAGAGAT+GGG 0.527961 2.1:-76217443 None:intergenic
GCGAGCAAAGAGGTAACAAA+TGG 0.530365 2.1:-76218312 None:intergenic
CTGATATTCAGCTTAAGCAC+TGG 0.530590 2.1:+76217985 MS.gene00579:CDS
CAGCTTAAGCACTGGCGCAA+AGG 0.531196 2.1:+76217993 MS.gene00579:CDS
GCTTACAGTATTTACGGAAG+AGG 0.538011 2.1:-76218082 None:intergenic
TGGAACATATTCAGGAAGGT+TGG 0.538336 2.1:-76218134 None:intergenic
GAACAGTCACATGGGTCGAC+TGG 0.550051 2.1:+76218177 MS.gene00579:CDS
GATGTTGGAAGGATGAAGAA+AGG 0.550089 2.1:-76217260 None:intergenic
AAATTAAAAGTTCATGACTT+CGG 0.551140 2.1:-76218378 None:intergenic
CAACAAGGGTAAAGGTCCCC+TGG 0.554561 2.1:-76217389 None:intergenic
GAAGCATATTGCGGCTGTAG+CGG 0.557435 2.1:-76217962 None:intergenic
GATTGGATGGCGAGGATGCG+TGG 0.560283 2.1:+76216875 None:intergenic
TTCTTGGGGAACAGTTACTC+TGG 0.561336 2.1:+76217761 MS.gene00579:CDS
ACCTTCCTGAATATGTTCCA+TGG 0.561364 2.1:+76218137 MS.gene00579:CDS
ACTGGCGCAAAGGCTCTCAA+TGG 0.562161 2.1:+76218003 MS.gene00579:CDS
AGCAAGGGCTCCAATGCACT+GGG 0.565315 2.1:-76218344 None:intergenic
AAGACATCAGAAGAAGAAGA+AGG 0.565316 2.1:-76217097 None:intergenic
AGTTATATTGTCCCTCCCGT+AGG 0.573521 2.1:-76218225 None:intergenic
CAACATATCCTCCTCTTCGG+AGG 0.575606 2.1:-76217233 None:intergenic
TTCGGAAGAGAGGTCAAGCA+AGG 0.577351 2.1:-76218360 None:intergenic
TATCTGAATTATATGGACAA+AGG 0.578382 2.1:-76218283 None:intergenic
TGGGTCGACTGGTCAATGCT+CGG 0.578827 2.1:+76218188 MS.gene00579:CDS
ATATCCTCCTCTTCGGAGGG+GGG 0.578887 2.1:-76217229 None:intergenic
GAAAAGTTGGTGGTCAGAGA+AGG 0.580866 2.1:-76217290 None:intergenic
CTCTGGCCGATGCGGAGAGG+CGG 0.581736 2.1:+76217778 MS.gene00579:CDS
CTCTCCCAGAGTGGCAACAA+GGG 0.584168 2.1:-76217403 None:intergenic
AGTTTAGGTACACGAGCGTA+GGG 0.587019 2.1:-76217349 None:intergenic
TAGTAGCCGCCTCTCCGCAT+CGG 0.587573 2.1:-76217784 None:intergenic
TGTTTGAATTAAGGGAACCA+TGG 0.588224 2.1:-76218154 None:intergenic
TGAGATATCTGTAAACAGTA+GGG 0.589706 2.1:-76217881 None:intergenic
ACATATTCAGGAAGGTTGGA+AGG 0.590150 2.1:-76218130 None:intergenic
TCTCTCCCAGAGTGGCAACA+AGG 0.591099 2.1:-76217404 None:intergenic
GTTGGTGGTCAGAGAAGGTG+TGG 0.594958 2.1:-76217285 None:intergenic
ATACAGGCTATAAGGAACAA+TGG 0.597495 2.1:+76218257 MS.gene00579:CDS
CTCATCCGGCAACCTACGGG+AGG 0.602306 2.1:+76218213 MS.gene00579:CDS
AAGGTGTGGGTGATGTTGGA+AGG 0.605998 2.1:-76217271 None:intergenic
GAGTTTAGGTACACGAGCGT+AGG 0.606394 2.1:-76217350 None:intergenic
AACAGTTACTCTGGCCGATG+CGG 0.608462 2.1:+76217770 MS.gene00579:CDS
AGTTCATGACTTCGGAAGAG+AGG 0.611942 2.1:-76218370 None:intergenic
ACATATCCTCCTCTTCGGAG+GGG 0.614099 2.1:-76217231 None:intergenic
GTGGTATTTCTTAGGAACCA+AGG 0.614170 2.1:-76217323 None:intergenic
AAATGTTGAAGAGATGGGAG+TGG 0.614619 2.1:-76217438 None:intergenic
AGGGTAAAGGTCCCCTGGTG+AGG 0.616195 2.1:-76217384 None:intergenic
AAGCCCTCCAGAAAAGTTGG+TGG 0.617230 2.1:-76217300 None:intergenic
AAGCAACAGCAACAGCACTC+TGG 0.619654 2.1:+76216929 MS.gene00579:CDS
CGGCCTCGGCCATAACGGGA+AGG 0.626778 2.1:-76217942 None:intergenic
TTGGAAGGTAGTGTTCATCT+GGG 0.631422 2.1:-76218115 None:intergenic
CGCTTTCATGTACCTCACCA+GGG 0.635577 2.1:+76217372 MS.gene00579:CDS
GAATATAACCAGGAGGAGCG+TGG 0.637995 2.1:-76217465 None:intergenic
CTATATAAACAGCAAGTGCA+CGG 0.643830 2.1:-76218037 None:intergenic
ATTCAAACAGAACAGTCACA+TGG 0.646779 2.1:+76218168 MS.gene00579:CDS
GAATATCAGGAAGCATATTG+CGG 0.649024 2.1:-76217971 None:intergenic
GGGAGGGACAATATAACTGT+CGG 0.656711 2.1:+76218230 MS.gene00579:CDS
GATCAAACTTGCGAGCAAAG+AGG 0.662138 2.1:-76218322 None:intergenic
TGGATGGCGAGGATGCGTGG+AGG 0.662304 2.1:+76216878 None:intergenic
ACCATGGAACATATTCAGGA+AGG 0.662805 2.1:-76218138 None:intergenic
TCGGAAGAGAGGTCAAGCAA+GGG 0.668978 2.1:-76218359 None:intergenic
TTCAAACAGAACAGTCACAT+GGG 0.669144 2.1:+76218169 MS.gene00579:CDS
TCATCCGGCAACCTACGGGA+GGG 0.670560 2.1:+76218214 MS.gene00579:CDS
TTACTCTGGCCGATGCGGAG+AGG 0.672407 2.1:+76217775 MS.gene00579:CDS
GTAGTGAATGTGAGAAGTTG+TGG 0.678670 2.1:-76217023 None:intergenic
TGAAAGAATCTCTCCCAGAG+TGG 0.689461 2.1:-76217412 None:intergenic
GCTTTCATGTACCTCACCAG+GGG 0.715038 2.1:+76217373 MS.gene00579:CDS
GAAACGTTGAGAATATAACC+AGG 0.715720 2.1:-76217475 None:intergenic
TTGGTGGTCAGAGAAGGTGT+GGG 0.735159 2.1:-76217284 None:intergenic
ACGTTGAGAATATAACCAGG+AGG 0.765757 2.1:-76217472 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATAGTTTATGATTTAGT+GGG - chr2.1:76217677-76217696 None:intergenic 15.0%
!! TATTATAGTTTATGATTTAG+TGG - chr2.1:76217678-76217697 None:intergenic 15.0%
! AAGTTTCCTTGATAGAATTA+AGG - chr2.1:76217552-76217571 None:intergenic 25.0%
! AATGAATTGTTTGTACTTGT+AGG + chr2.1:76217587-76217606 MS.gene00579:intron 25.0%
! AGTTTCCTTGATAGAATTAA+GGG - chr2.1:76217551-76217570 None:intergenic 25.0%
! ATCTGAATTATATGGACAAA+GGG - chr2.1:76218285-76218304 None:intergenic 25.0%
! ATGAATTGTTTGTACTTGTA+GGG + chr2.1:76217588-76217607 MS.gene00579:intron 25.0%
! GAAGTCATATCTGAATTATA+TGG - chr2.1:76218293-76218312 None:intergenic 25.0%
! GATATAAATGTTGAAGAGAT+GGG - chr2.1:76217446-76217465 None:intergenic 25.0%
! GTTTATGATTCATTCATACA+TGG - chr2.1:76217626-76217645 None:intergenic 25.0%
! TATCTGAATTATATGGACAA+AGG - chr2.1:76218286-76218305 None:intergenic 25.0%
! TGAAAATATGAGTAAAGAGA+TGG - chr2.1:76217652-76217671 None:intergenic 25.0%
AATATGAGTAAAGAGATGGA+TGG - chr2.1:76217648-76217667 None:intergenic 30.0%
ATGAGATATCTGTAAACAGT+AGG - chr2.1:76217885-76217904 None:intergenic 30.0%
ATTACAGTTACAGTTGTTGT+TGG - chr2.1:76217161-76217180 None:intergenic 30.0%
GACTGTTCTGTTTGAATTAA+GGG - chr2.1:76218165-76218184 None:intergenic 30.0%
GGATATAAATGTTGAAGAGA+TGG - chr2.1:76217447-76217466 None:intergenic 30.0%
GTTTCCTTGATAGAATTAAG+GGG - chr2.1:76217550-76217569 None:intergenic 30.0%
TGACTGTTCTGTTTGAATTA+AGG - chr2.1:76218166-76218185 None:intergenic 30.0%
TGAGATATCTGTAAACAGTA+GGG - chr2.1:76217884-76217903 None:intergenic 30.0%
TTTCCTTGATAGAATTAAGG+GGG - chr2.1:76217549-76217568 None:intergenic 30.0%
! TTACAGTTACAGTTGTTGTT+GGG - chr2.1:76217160-76217179 None:intergenic 30.0%
!! ATGAGTTTTGTCTTATTCAC+AGG + chr2.1:76217734-76217753 MS.gene00579:intron 30.0%
!!! TATAACTGTCGGTTTTATAC+AGG + chr2.1:76218241-76218260 MS.gene00579:CDS 30.0%
AAGACATCAGAAGAAGAAGA+AGG - chr2.1:76217100-76217119 None:intergenic 35.0%
AAGCAGGCTTACAGTATTTA+CGG - chr2.1:76218091-76218110 None:intergenic 35.0%
AGAAGAAGAAGAAGGTTGTT+GGG - chr2.1:76217092-76217111 None:intergenic 35.0%
ATACAGGCTATAAGGAACAA+TGG + chr2.1:76218257-76218276 MS.gene00579:CDS 35.0%
ATTCAAACAGAACAGTCACA+TGG + chr2.1:76218168-76218187 MS.gene00579:CDS 35.0%
CTATATAAACAGCAAGTGCA+CGG - chr2.1:76218040-76218059 None:intergenic 35.0%
CTTACAGTATTTACGGAAGA+GGG - chr2.1:76218084-76218103 None:intergenic 35.0%
GAAACGTTGAGAATATAACC+AGG - chr2.1:76217478-76217497 None:intergenic 35.0%
TGTTTGAATTAAGGGAACCA+TGG - chr2.1:76218157-76218176 None:intergenic 35.0%
TTCAAACAGAACAGTCACAT+GGG + chr2.1:76218169-76218188 MS.gene00579:CDS 35.0%
! GAATATCAGGAAGCATATTG+CGG - chr2.1:76217974-76217993 None:intergenic 35.0%
! TAGGGATAGTGGTATTTCTT+AGG - chr2.1:76217334-76217353 None:intergenic 35.0%
!! TCGGTTTTATACAGGCTATA+AGG + chr2.1:76218249-76218268 MS.gene00579:CDS 35.0%
!! TTATTCACAGGCTGTTTCTT+GGG + chr2.1:76217746-76217765 MS.gene00579:intron 35.0%
AAATGTTGAAGAGATGGGAG+TGG - chr2.1:76217441-76217460 None:intergenic 40.0%
ACATATTCAGGAAGGTTGGA+AGG - chr2.1:76218133-76218152 None:intergenic 40.0%
ACCATGGAACATATTCAGGA+AGG - chr2.1:76218141-76218160 None:intergenic 40.0%
ACCTTCCTGAATATGTTCCA+TGG + chr2.1:76218137-76218156 MS.gene00579:CDS 40.0%
ACGTTGAGAATATAACCAGG+AGG - chr2.1:76217475-76217494 None:intergenic 40.0%
AGGTACATGAAAGCGAGTTT+AGG - chr2.1:76217367-76217386 None:intergenic 40.0%
CAGAAGAAGAAGAAGGTTGT+TGG - chr2.1:76217093-76217112 None:intergenic 40.0%
CAGTGCTTAAGCTGAATATC+AGG - chr2.1:76217987-76218006 None:intergenic 40.0%
CATCCCCCTTAATTCTATCA+AGG + chr2.1:76217543-76217562 MS.gene00579:intron 40.0%
CTGATATTCAGCTTAAGCAC+TGG + chr2.1:76217985-76218004 MS.gene00579:CDS 40.0%
GATGTTGGAAGGATGAAGAA+AGG - chr2.1:76217263-76217282 None:intergenic 40.0%
GCTTACAGTATTTACGGAAG+AGG - chr2.1:76218085-76218104 None:intergenic 40.0%
GTAGTGAATGTGAGAAGTTG+TGG - chr2.1:76217026-76217045 None:intergenic 40.0%
GTGGTATTTCTTAGGAACCA+AGG - chr2.1:76217326-76217345 None:intergenic 40.0%
TATGATGATCCTTCCCGTTA+TGG + chr2.1:76217933-76217952 MS.gene00579:CDS 40.0%
TGGAACATATTCAGGAAGGT+TGG - chr2.1:76218137-76218156 None:intergenic 40.0%
TTGGAAGGTAGTGTTCATCT+GGG - chr2.1:76218118-76218137 None:intergenic 40.0%
! AGTTGTTGTTGGGTTGTTGT+TGG - chr2.1:76217150-76217169 None:intergenic 40.0%
! GGGATATTGCGTCGATAAAA+GGG - chr2.1:76217511-76217530 None:intergenic 40.0%
! TACGGAAGAGGGAAAAGTAT+TGG - chr2.1:76218073-76218092 None:intergenic 40.0%
! TGGGATATTGCGTCGATAAA+AGG - chr2.1:76217512-76217531 None:intergenic 40.0%
!! ACGGAAGAGGGAAAAGTATT+GGG - chr2.1:76218072-76218091 None:intergenic 40.0%
!! CTTATTCACAGGCTGTTTCT+TGG + chr2.1:76217745-76217764 MS.gene00579:intron 40.0%
!! TATTCACAGGCTGTTTCTTG+GGG + chr2.1:76217747-76217766 MS.gene00579:intron 40.0%
!!! TTGTTGCTTGTTTTTGCTGC+TGG + chr2.1:76216983-76217002 MS.gene00579:CDS 40.0%
AACATATCCTCCTCTTCGGA+GGG - chr2.1:76217235-76217254 None:intergenic 45.0%
ACAGTAGGGAAGTTGTAGAC+TGG - chr2.1:76217870-76217889 None:intergenic 45.0%
AGTTATATTGTCCCTCCCGT+AGG - chr2.1:76218228-76218247 None:intergenic 45.0%
AGTTCATGACTTCGGAAGAG+AGG - chr2.1:76218373-76218392 None:intergenic 45.0%
AGTTTAGGTACACGAGCGTA+GGG - chr2.1:76217352-76217371 None:intergenic 45.0%
ATTTATATCCACGCTCCTCC+TGG + chr2.1:76217457-76217476 MS.gene00579:CDS 45.0%
CAAGTTTGATCCCAGTGCAT+TGG + chr2.1:76218334-76218353 MS.gene00579:CDS 45.0%
CAGTAGGGAAGTTGTAGACT+GGG - chr2.1:76217869-76217888 None:intergenic 45.0%
CTCCAACATATCCTCCTCTT+CGG - chr2.1:76217239-76217258 None:intergenic 45.0%
GATCAAACTTGCGAGCAAAG+AGG - chr2.1:76218325-76218344 None:intergenic 45.0%
GCGAGCAAAGAGGTAACAAA+TGG - chr2.1:76218315-76218334 None:intergenic 45.0%
GGGAACCATGGAACATATTC+AGG - chr2.1:76218145-76218164 None:intergenic 45.0%
GGGAGGGACAATATAACTGT+CGG + chr2.1:76218230-76218249 MS.gene00579:CDS 45.0%
GTTGGAAGGTAGTGTTCATC+TGG - chr2.1:76218119-76218138 None:intergenic 45.0%
TGAAAAGTCGAGCAGTGCAT+TGG - chr2.1:76217811-76217830 None:intergenic 45.0%
TGAAAGAATCTCTCCCAGAG+TGG - chr2.1:76217415-76217434 None:intergenic 45.0%
TTCTTGGGGAACAGTTACTC+TGG + chr2.1:76217761-76217780 MS.gene00579:CDS 45.0%
TTTACCCTTGTTGCCACTCT+GGG + chr2.1:76217399-76217418 MS.gene00579:CDS 45.0%
! CTCTGGGAGAGATTCTTTCA+AGG + chr2.1:76217415-76217434 MS.gene00579:CDS 45.0%
! GTTGTTGGGTTGTTGTTGGA+GGG - chr2.1:76217146-76217165 None:intergenic 45.0%
! TCTCTGACCACCAACTTTTC+TGG + chr2.1:76217293-76217312 MS.gene00579:CDS 45.0%
! TGACCACCAACTTTTCTGGA+GGG + chr2.1:76217297-76217316 MS.gene00579:CDS 45.0%
! TGTTGTTGGGTTGTTGTTGG+AGG - chr2.1:76217147-76217166 None:intergenic 45.0%
!! GAAAAGTTGGTGGTCAGAGA+AGG - chr2.1:76217293-76217312 None:intergenic 45.0%
!! GCACTCTGGTTTGGTTAGAT+TGG + chr2.1:76216943-76216962 MS.gene00579:CDS 45.0%
AACAGTTACTCTGGCCGATG+CGG + chr2.1:76217770-76217789 MS.gene00579:CDS 50.0%
AAGCAACAGCAACAGCACTC+TGG + chr2.1:76216929-76216948 MS.gene00579:CDS 50.0%
AAGCCCTCCAGAAAAGTTGG+TGG - chr2.1:76217303-76217322 None:intergenic 50.0%
AAGGTGTGGGTGATGTTGGA+AGG - chr2.1:76217274-76217293 None:intergenic 50.0%
ACAGCAACAGCACTCTGGTT+TGG + chr2.1:76216934-76216953 MS.gene00579:CDS 50.0%
ACATATCCTCCTCTTCGGAG+GGG - chr2.1:76217234-76217253 None:intergenic 50.0%
AGGAAGCCCTCCAGAAAAGT+TGG - chr2.1:76217306-76217325 None:intergenic 50.0%
CAACATATCCTCCTCTTCGG+AGG - chr2.1:76217236-76217255 None:intergenic 50.0%
CAGAGTGGCAACAAGGGTAA+AGG - chr2.1:76217400-76217419 None:intergenic 50.0%
CGCTTTCATGTACCTCACCA+GGG + chr2.1:76217372-76217391 MS.gene00579:CDS 50.0%
CTCCGAAGAGGAGGATATGT+TGG + chr2.1:76217234-76217253 MS.gene00579:CDS 50.0%
CTTTACCCTTGTTGCCACTC+TGG + chr2.1:76217398-76217417 MS.gene00579:CDS 50.0%
GAAGCATATTGCGGCTGTAG+CGG - chr2.1:76217965-76217984 None:intergenic 50.0%
GAATATAACCAGGAGGAGCG+TGG - chr2.1:76217468-76217487 None:intergenic 50.0%
GAGTTTAGGTACACGAGCGT+AGG - chr2.1:76217353-76217372 None:intergenic 50.0%
GCTTTCATGTACCTCACCAG+GGG + chr2.1:76217373-76217392 MS.gene00579:CDS 50.0%
TCGACGCAATATCCCAAGTC+AGG + chr2.1:76217516-76217535 MS.gene00579:CDS 50.0%
TCGCTTTCATGTACCTCACC+AGG + chr2.1:76217371-76217390 MS.gene00579:CDS 50.0%
TCGGAAGAGAGGTCAAGCAA+GGG - chr2.1:76218362-76218381 None:intergenic 50.0%
TGTTCATCTGGGTAGCAAGC+AGG - chr2.1:76218107-76218126 None:intergenic 50.0%
TTCGGAAGAGAGGTCAAGCA+AGG - chr2.1:76218363-76218382 None:intergenic 50.0%
! AGAGAAGGTGTGGGTGATGT+TGG - chr2.1:76217278-76217297 None:intergenic 50.0%
! CTGACCACCAACTTTTCTGG+AGG + chr2.1:76217296-76217315 MS.gene00579:CDS 50.0%
! TGCTGTTGCTGTTGCTTCGT+CGG - chr2.1:76216926-76216945 None:intergenic 50.0%
! TTGGTGGTCAGAGAAGGTGT+GGG - chr2.1:76217287-76217306 None:intergenic 50.0%
!! ACTTTTCTGGAGGGCTTCCT+TGG + chr2.1:76217306-76217325 MS.gene00579:CDS 50.0%
!! TTTGCTGCTGGTGTCGTCAT+TGG + chr2.1:76216995-76217014 MS.gene00579:CDS 50.0%
AAGCAAGGGCTCCAATGCAC+TGG - chr2.1:76218348-76218367 None:intergenic 55.0%
ACTGGCGCAAAGGCTCTCAA+TGG + chr2.1:76218003-76218022 MS.gene00579:CDS 55.0%
AGCAAGGGCTCCAATGCACT+GGG - chr2.1:76218347-76218366 None:intergenic 55.0%
AGGGGGATGCATACCTGACT+TGG - chr2.1:76217532-76217551 None:intergenic 55.0%
ATATCCTCCTCTTCGGAGGG+GGG - chr2.1:76217232-76217251 None:intergenic 55.0%
ATGCGTGGAGGAGGAGAAGA+AGG + chr2.1:76216890-76216909 MS.gene00579:CDS 55.0%
CAACAAGGGTAAAGGTCCCC+TGG - chr2.1:76217392-76217411 None:intergenic 55.0%
CATATCCTCCTCTTCGGAGG+GGG - chr2.1:76217233-76217252 None:intergenic 55.0%
CTCTCCCAGAGTGGCAACAA+GGG - chr2.1:76217406-76217425 None:intergenic 55.0%
GAACAGTCACATGGGTCGAC+TGG + chr2.1:76218177-76218196 MS.gene00579:CDS 55.0%
GGGGGATGCATACCTGACTT+GGG - chr2.1:76217531-76217550 None:intergenic 55.0%
GTACACGAGCGTAGGGATAG+TGG - chr2.1:76217345-76217364 None:intergenic 55.0%
GTCAATGCTCGGTCCTCATC+CGG + chr2.1:76218199-76218218 MS.gene00579:CDS 55.0%
TCTCTCCCAGAGTGGCAACA+AGG - chr2.1:76217407-76217426 None:intergenic 55.0%
! TGGGTCGACTGGTCAATGCT+CGG + chr2.1:76218188-76218207 MS.gene00579:CDS 55.0%
!! CAGCTTAAGCACTGGCGCAA+AGG + chr2.1:76217993-76218012 MS.gene00579:CDS 55.0%
!! GTTGGTGGTCAGAGAAGGTG+TGG - chr2.1:76217288-76217307 None:intergenic 55.0%
AGGGTAAAGGTCCCCTGGTG+AGG - chr2.1:76217387-76217406 None:intergenic 60.0%
GATCCTTCCCGTTATGGCCG+AGG + chr2.1:76217939-76217958 MS.gene00579:CDS 60.0%
GGTCCTCATCCGGCAACCTA+CGG + chr2.1:76218209-76218228 MS.gene00579:CDS 60.0%
GTCCTCATCCGGCAACCTAC+GGG + chr2.1:76218210-76218229 MS.gene00579:CDS 60.0%
TAGTAGCCGCCTCTCCGCAT+CGG - chr2.1:76217787-76217806 None:intergenic 60.0%
TATTGCGGCTGTAGCGGCCT+CGG - chr2.1:76217959-76217978 None:intergenic 60.0%
TCATCCGGCAACCTACGGGA+GGG + chr2.1:76218214-76218233 MS.gene00579:CDS 60.0%
TGTAGCGGCCTCGGCCATAA+CGG - chr2.1:76217950-76217969 None:intergenic 60.0%
TTACTCTGGCCGATGCGGAG+AGG + chr2.1:76217775-76217794 MS.gene00579:CDS 60.0%
TTGTCCCTCCCGTAGGTTGC+CGG - chr2.1:76218221-76218240 None:intergenic 60.0%
CTCATCCGGCAACCTACGGG+AGG + chr2.1:76218213-76218232 MS.gene00579:CDS 65.0%
CTCCCGTAGGTTGCCGGATG+AGG - chr2.1:76218215-76218234 None:intergenic 65.0%
GGAGGAGGAGGAGGAGAAGG+AGG - chr2.1:76217199-76217218 None:intergenic 65.0%
GGAGGAGGAGGAGGAGGAGA+AGG - chr2.1:76217202-76217221 None:intergenic 65.0%
GTAGCGGCCTCGGCCATAAC+GGG - chr2.1:76217949-76217968 None:intergenic 65.0%
ACCACCCCCCTCCGAAGAGG+AGG + chr2.1:76217225-76217244 MS.gene00579:CDS 70.0%
CTCTGGCCGATGCGGAGAGG+CGG + chr2.1:76217778-76217797 MS.gene00579:CDS 70.0%
GGTGGAGGAGGAGGAGGAGG+AGG - chr2.1:76217208-76217227 None:intergenic 70.0%
TCCACCACCCCCCTCCGAAG+AGG + chr2.1:76217222-76217241 MS.gene00579:CDS 70.0%
TCCTCCTCTTCGGAGGGGGG+TGG - chr2.1:76217229-76217248 None:intergenic 70.0%
TCCTCTTCGGAGGGGGGTGG+TGG - chr2.1:76217226-76217245 None:intergenic 70.0%
! CGGCCTCGGCCATAACGGGA+AGG - chr2.1:76217945-76217964 None:intergenic 70.0%
! TCTTCGGAGGGGGGTGGTGG+AGG - chr2.1:76217223-76217242 None:intergenic 70.0%
!! GGTGGTGGAGGAGGAGGAGG+AGG - chr2.1:76217211-76217230 None:intergenic 70.0%
!! GAGGGGGGTGGTGGAGGAGG+AGG - chr2.1:76217217-76217236 None:intergenic 75.0%
!! GGGGGTGGTGGAGGAGGAGG+AGG - chr2.1:76217214-76217233 None:intergenic 75.0%
!! TCGGAGGGGGGTGGTGGAGG+AGG - chr2.1:76217220-76217239 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 76216890 76218397 76216890 ID=MS.gene00579
chr2.1 mRNA 76216890 76218397 76216890 ID=MS.gene00579.t1;Parent=MS.gene00579
chr2.1 exon 76216890 76217537 76216890 ID=MS.gene00579.t1.exon1;Parent=MS.gene00579.t1
chr2.1 CDS 76216890 76217537 76216890 ID=cds.MS.gene00579.t1;Parent=MS.gene00579.t1
chr2.1 exon 76217756 76218397 76217756 ID=MS.gene00579.t1.exon2;Parent=MS.gene00579.t1
chr2.1 CDS 76217756 76218397 76217756 ID=cds.MS.gene00579.t1;Parent=MS.gene00579.t1
Gene Sequence

>MS.gene00579

ATGCGTGGAGGAGGAGAAGAAGGAGACAGAGATCCGACGAAGCAACAGCAACAGCACTCTGGTTTGGTTAGATTGGTACAACAACTTGTTACATTGTTGCTTGTTTTTGCTGCTGGTGTCGTCATTGGTTTAACCACAACTTCTCACATTCACTACTTCAATACAAGTCACAACAATAATAACTATCTTCATTTCATTTCCCAACAACCTTCTTCTTCTTCTGATGTCTTCAATCTCGATACTACTATTCACACCCTCCAACAACAACCCAACAACAACTGTAACTGTAATTGTACAATCATTGAACCTCCTTCTCCTCCTCCTCCTCCTCCTCCACCACCCCCCTCCGAAGAGGAGGATATGTTGGAGTCCTTTCTTCATCCTTCCAACATCACCCACACCTTCTCTGACCACCAACTTTTCTGGAGGGCTTCCTTGGTTCCTAAGAAATACCACTATCCCTACGCTCGTGTACCTAAACTCGCTTTCATGTACCTCACCAGGGGACCTTTACCCTTGTTGCCACTCTGGGAGAGATTCTTTCAAGGCCACTCCCATCTCTTCAACATTTATATCCACGCTCCTCCTGGTTATATTCTCAACGTTTCTGATTCTTCTCCCTTTTATCGACGCAATATCCCAAGTCAGGTATGCATCCCCCTTAATTCTATCAAGGAAACTTCTTTGCTTTTATTTAAATGAATTGTTTGTACTTGTAGGGCTGTAGTATTCACCATGTATGAATGAATCATAAACCATCCATCTCTTTACTCATATTTTCACTCCCACTAAATCATAAACTATAATATTAATTTATGTTATTTGTAGAGAGTATTCTATTCTTATGAGTTTTGTCTTATTCACAGGCTGTTTCTTGGGGAACAGTTACTCTGGCCGATGCGGAGAGGCGGCTACTAGCCAATGCACTGCTCGACTTTTCAAATGAGCGCTTTGTTCTACTCTCAGAGAGTTGCATCCCAGTCTACAACTTCCCTACTGTTTACAGATATCTCATTGATTCTGCACACAGCTTTGTTGAGTCATATGATGATCCTTCCCGTTATGGCCGAGGCCGCTACAGCCGCAATATGCTTCCTGATATTCAGCTTAAGCACTGGCGCAAAGGCTCTCAATGGTTCGAACTCAACCGTGCACTTGCTGTTTATATAGTCTCTGACACCCAATACTTTTCCCTCTTCCGTAAATACTGTAAGCCTGCTTGCTACCCAGATGAACACTACCTTCCAACCTTCCTGAATATGTTCCATGGTTCCCTTAATTCAAACAGAACAGTCACATGGGTCGACTGGTCAATGCTCGGTCCTCATCCGGCAACCTACGGGAGGGACAATATAACTGTCGGTTTTATACAGGCTATAAGGAACAATGGATCCCTTTGTCCATATAATTCAGATATGACTTCCATTTGTTACCTCTTTGCTCGCAAGTTTGATCCCAGTGCATTGGAGCCCTTGCTTGACCTCTCTTCCGAAGTCATGAACTTTTAA
Protein sequence

>MS.gene00579.t1

MRGGGEEGDRDPTKQQQQHSGLVRLVQQLVTLLLVFAAGVVIGLTTTSHIHYFNTSHNNNNYLHFISQQPSSSSDVFNLDTTIHTLQQQPNNNCNCNCTIIEPPSPPPPPPPPPPSEEEDMLESFLHPSNITHTFSDHQLFWRASLVPKKYHYPYARVPKLAFMYLTRGPLPLLPLWERFFQGHSHLFNIYIHAPPGYILNVSDSSPFYRRNIPSQAVSWGTVTLADAERRLLANALLDFSNERFVLLSESCIPVYNFPTVYRYLIDSAHSFVESYDDPSRYGRGRYSRNMLPDIQLKHWRKGSQWFELNRALAVYIVSDTQYFSLFRKYCKPACYPDEHYLPTFLNMFHGSLNSNRTVTWVDWSMLGPHPATYGRDNITVGFIQAIRNNGSLCPYNSDMTSICYLFARKFDPSALEPLLDLSSEVMNF