AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047241

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047241.t1 MTR_2g005350 97.712 437 6 3 1 435 4 438 0.0 870
MS.gene047241.t1 MTR_1g016880 56.918 318 134 3 120 435 60 376 9.57e-131 382
MS.gene047241.t1 MTR_1g110290 52.812 320 148 2 117 435 76 393 1.31e-121 360
MS.gene047241.t1 MTR_5g055480 52.258 310 146 1 126 435 83 390 1.14e-120 357
MS.gene047241.t1 MTR_5g006930 46.292 391 194 4 46 435 11 386 6.18e-120 355
MS.gene047241.t1 MTR_8g015500 53.770 305 139 2 131 434 109 412 1.42e-117 350
MS.gene047241.t1 MTR_6g083830 52.427 309 145 2 128 435 112 419 1.92e-116 347
MS.gene047241.t1 MTR_5g006920 43.645 417 199 5 31 435 29 421 2.69e-116 347
MS.gene047241.t1 MTR_3g104840 47.619 315 145 4 122 435 98 393 1.42e-100 305
MS.gene047241.t1 MTR_3g108740 41.824 318 162 5 132 428 58 373 7.32e-75 239
MS.gene047241.t1 MTR_1g009960 43.000 300 149 3 156 435 102 399 7.14e-73 234
MS.gene047241.t1 MTR_4g127550 41.667 288 147 3 162 430 104 389 6.73e-70 226
MS.gene047241.t1 MTR_1g009960 46.721 244 122 2 156 393 102 343 2.81e-68 222
MS.gene047241.t1 MTR_2g037600 43.007 286 141 4 165 430 105 388 3.42e-68 222
MS.gene047241.t1 MTR_2g037620 41.754 285 145 3 165 430 97 379 2.92e-67 219
MS.gene047241.t1 MTR_2g024120 39.145 304 138 10 165 426 61 359 3.95e-51 177
MS.gene047241.t1 MTR_8g094180 36.624 314 144 11 165 429 55 362 2.48e-48 169
MS.gene047241.t1 MTR_3g106930 37.179 312 180 8 134 433 67 374 1.82e-46 164
MS.gene047241.t1 MTR_8g094180 37.879 264 127 8 165 395 55 314 5.86e-45 159
MS.gene047241.t1 MTR_1g048320 38.062 289 148 10 165 433 64 341 6.65e-41 149
MS.gene047241.t1 MTR_2g087610 32.768 354 180 12 116 433 34 365 1.38e-35 135
MS.gene047241.t1 MTR_1g031060 34.364 291 158 8 165 433 80 359 1.79e-33 129
MS.gene047241.t1 MTR_1g031080 35.223 247 130 7 208 433 52 289 2.19e-31 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047241.t1 AT1G10280 56.036 439 159 6 2 435 3 412 1.03e-179 508
MS.gene047241.t1 AT5G11730 55.960 302 132 1 134 435 86 386 1.09e-125 369
MS.gene047241.t1 AT5G25970 54.430 316 142 2 120 434 72 386 1.09e-124 367
MS.gene047241.t1 AT5G25970 54.430 316 142 2 120 434 72 386 1.09e-124 367
MS.gene047241.t1 AT5G25970 54.430 316 142 2 120 434 72 386 1.09e-124 367
MS.gene047241.t1 AT1G51770 54.952 313 139 2 124 435 81 392 2.90e-124 367
MS.gene047241.t1 AT3G21310 54.777 314 140 2 123 435 71 383 1.44e-122 361
MS.gene047241.t1 AT3G21310 54.777 314 140 2 123 435 71 383 1.44e-122 361
MS.gene047241.t1 AT1G68390 55.238 315 135 4 125 435 96 408 2.24e-119 354
MS.gene047241.t1 AT1G73810 51.792 307 143 2 131 435 115 418 8.76e-110 330
MS.gene047241.t1 AT1G68380 52.294 327 146 6 114 435 71 392 1.10e-109 329
MS.gene047241.t1 AT1G51770 50.160 313 127 3 124 435 81 365 1.15e-107 323
MS.gene047241.t1 AT1G10880 51.736 288 137 2 142 429 95 380 6.88e-107 322
MS.gene047241.t1 AT5G16170 48.265 317 145 3 137 435 94 409 7.68e-103 312
MS.gene047241.t1 AT4G31350 43.110 283 140 3 165 428 88 368 5.29e-74 236
MS.gene047241.t1 AT4G31350 43.110 283 140 3 165 428 88 368 5.29e-74 236
MS.gene047241.t1 AT4G31350 43.110 283 140 3 165 428 88 368 5.29e-74 236
MS.gene047241.t1 AT4G30060 44.755 286 134 4 166 430 109 391 5.32e-71 229
MS.gene047241.t1 AT4G30060 44.755 286 134 4 166 430 109 391 5.32e-71 229
MS.gene047241.t1 AT4G25870 40.979 327 165 8 125 428 59 380 6.73e-71 229
MS.gene047241.t1 AT4G31350 42.403 283 137 4 165 428 88 363 1.02e-68 223
MS.gene047241.t1 AT2G19160 42.403 283 141 3 166 428 106 386 5.88e-68 221
MS.gene047241.t1 AT2G19160 42.403 283 141 3 166 428 106 386 5.88e-68 221
MS.gene047241.t1 AT5G57270 42.958 284 139 4 166 428 98 379 2.18e-67 220
MS.gene047241.t1 AT5G57270 42.958 284 139 4 166 428 98 379 2.18e-67 220
MS.gene047241.t1 AT5G57270 42.958 284 139 4 166 428 98 379 2.18e-67 220
MS.gene047241.t1 AT5G57270 42.958 284 139 4 166 428 98 379 2.18e-67 220
MS.gene047241.t1 AT5G57270 42.958 284 139 4 166 428 98 379 2.18e-67 220
MS.gene047241.t1 AT3G21310 56.111 180 78 1 123 301 71 250 6.91e-64 207
MS.gene047241.t1 AT1G62305 39.604 303 136 10 165 426 68 364 1.28e-54 186
MS.gene047241.t1 AT3G52060 38.571 280 151 8 165 433 74 343 1.00e-52 180
MS.gene047241.t1 AT1G11940 39.597 298 134 10 165 421 73 365 5.79e-52 179
MS.gene047241.t1 AT5G25330 40.860 279 154 7 166 433 81 359 1.15e-50 175
MS.gene047241.t1 AT5G14550 39.357 249 129 5 165 394 64 309 2.19e-49 171
MS.gene047241.t1 AT5G14550 36.275 306 150 9 165 428 64 366 6.57e-49 171
MS.gene047241.t1 AT5G14550 36.393 305 149 9 165 427 64 365 8.78e-49 171
MS.gene047241.t1 AT1G62305 43.396 212 94 5 165 354 68 275 7.18e-47 164
MS.gene047241.t1 AT1G11940 47.753 178 86 4 165 338 73 247 1.97e-43 154
MS.gene047241.t1 AT1G62305 35.314 303 125 10 165 426 68 340 2.95e-39 145
MS.gene047241.t1 AT5G22070 34.437 302 151 11 166 433 71 359 3.71e-39 144
MS.gene047241.t1 AT4G32290 38.889 288 152 9 166 433 93 376 6.70e-39 144
MS.gene047241.t1 AT5G14550 34.812 293 145 10 165 428 64 339 7.86e-39 143

Find 126 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACTGTTCTGTTTGAATTA+AGG 0.235975 2.2:-73955340 None:intergenic
GGTGGTGGAGGAGGAGGAGG+AGG 0.258518 2.2:-73954383 None:intergenic
CTTATTCACAGGCTGTTTCT+TGG 0.263757 2.2:+73954922 MS.gene047241:intron
TGGGATATTGCGTCGATAAA+AGG 0.273998 2.2:-73954684 None:intergenic
TTATTCACAGGCTGTTTCTT+GGG 0.283167 2.2:+73954923 MS.gene047241:intron
TAGGGATAGTGGTATTTCTT+AGG 0.304256 2.2:-73954506 None:intergenic
GGGAACCATGGAACATATTC+AGG 0.311181 2.2:-73955319 None:intergenic
GAAGTCATATCTGAATTATA+TGG 0.351240 2.2:-73955467 None:intergenic
ACGGAAGAGGGAAAAGTATT+GGG 0.351893 2.2:-73955246 None:intergenic
AAGCAGGCTTACAGTATTTA+CGG 0.358219 2.2:-73955265 None:intergenic
GACTGTTCTGTTTGAATTAA+GGG 0.359001 2.2:-73955339 None:intergenic
CTTTACCCTTGTTGCCACTC+TGG 0.363568 2.2:+73954573 MS.gene047241:CDS
GTTGGAAGGTAGTGTTCATC+TGG 0.377430 2.2:-73955293 None:intergenic
TTGTCCCTCCCGTAGGTTGC+CGG 0.393192 2.2:-73955395 None:intergenic
TGTTGTTGTTGGGTTGTTGT+TGG 0.395852 2.2:-73954307 None:intergenic
TATGATGATCCTTCCCGTTA+TGG 0.399415 2.2:+73955110 MS.gene047241:CDS
TTTGCTGCTGGTGTCGTCAT+TGG 0.399698 2.2:+73954152 MS.gene047241:CDS
TACGGAAGAGGGAAAAGTAT+TGG 0.403770 2.2:-73955247 None:intergenic
CTCCCGTAGGTTGCCGGATG+AGG 0.404141 2.2:-73955389 None:intergenic
GCACTCTGGTTTGGTTAGAT+TGG 0.409919 2.2:+73954100 MS.gene047241:CDS
AGAAGAAGAAGAAGGTTGTT+GGG 0.412034 2.2:-73954246 None:intergenic
ATGCGTGGAGGAGGAGAAGA+AGG 0.422782 2.2:+73954047 MS.gene047241:CDS
TGCTGTTGCTGTTGCTTCGT+CGG 0.423883 2.2:-73954080 None:intergenic
AGGTACATGAAAGCGAGTTT+AGG 0.428382 2.2:-73954539 None:intergenic
CAGTGCTTAAGCTGAATATC+AGG 0.430715 2.2:-73955161 None:intergenic
TATTGCGGCTGTAGCGGCCT+CGG 0.431543 2.2:-73955133 None:intergenic
GTAGCGGCCTCGGCCATAAC+GGG 0.437948 2.2:-73955123 None:intergenic
GGTCCTCATCCGGCAACCTA+CGG 0.443893 2.2:+73955386 MS.gene047241:CDS
AGAGAAGGTGTGGGTGATGT+TGG 0.444842 2.2:-73954450 None:intergenic
TTTACCCTTGTTGCCACTCT+GGG 0.445219 2.2:+73954574 MS.gene047241:CDS
ACAGCAACAGCACTCTGGTT+TGG 0.447376 2.2:+73954091 MS.gene047241:CDS
GGATATAAATGTTGAAGAGA+TGG 0.459423 2.2:-73954619 None:intergenic
AAGCAAGGGCTCCAATGCAC+TGG 0.459653 2.2:-73955522 None:intergenic
GGGATATTGCGTCGATAAAA+GGG 0.460802 2.2:-73954683 None:intergenic
TGTAGCGGCCTCGGCCATAA+CGG 0.463805 2.2:-73955124 None:intergenic
CATATCCTCCTCTTCGGAGG+GGG 0.463862 2.2:-73954405 None:intergenic
TGTTGTTGGGTTGTTGTTGG+AGG 0.466863 2.2:-73954304 None:intergenic
CTCTGGGAGAGATTCTTTCA+AGG 0.470451 2.2:+73954590 MS.gene047241:CDS
ATCTGAATTATATGGACAAA+GGG 0.472207 2.2:-73955459 None:intergenic
CAAGTTTGATCCCAGTGCAT+TGG 0.474721 2.2:+73955511 MS.gene047241:CDS
GTTGTTGGGTTGTTGTTGGA+GGG 0.477667 2.2:-73954303 None:intergenic
GTCAATGCTCGGTCCTCATC+CGG 0.486872 2.2:+73955376 MS.gene047241:CDS
ATGGCGAGGATGCGTGGAGG+AGG 0.491011 2.2:+73954038 None:intergenic
GTCCTCATCCGGCAACCTAC+GGG 0.492307 2.2:+73955387 MS.gene047241:CDS
ATGAGATATCTGTAAACAGT+AGG 0.496818 2.2:-73955059 None:intergenic
GTACACGAGCGTAGGGATAG+TGG 0.503892 2.2:-73954517 None:intergenic
ATTTATATCCACGCTCCTCC+TGG 0.504909 2.2:+73954632 MS.gene047241:CDS
TATTCACAGGCTGTTTCTTG+GGG 0.505590 2.2:+73954924 MS.gene047241:intron
TCGACGCAATATCCCAAGTC+AGG 0.507097 2.2:+73954691 MS.gene047241:CDS
AGGAAGCCCTCCAGAAAAGT+TGG 0.507783 2.2:-73954478 None:intergenic
ACAGTAGGGAAGTTGTAGAC+TGG 0.509799 2.2:-73955044 None:intergenic
CAGTAGGGAAGTTGTAGACT+GGG 0.512385 2.2:-73955043 None:intergenic
AACATATCCTCCTCTTCGGA+GGG 0.513482 2.2:-73954407 None:intergenic
CTCCAACATATCCTCCTCTT+CGG 0.513489 2.2:-73954411 None:intergenic
TGTTCATCTGGGTAGCAAGC+AGG 0.515330 2.2:-73955281 None:intergenic
CAGAGTGGCAACAAGGGTAA+AGG 0.517032 2.2:-73954572 None:intergenic
GATCCTTCCCGTTATGGCCG+AGG 0.520104 2.2:+73955116 MS.gene047241:CDS
CTCCGAAGAGGAGGATATGT+TGG 0.522889 2.2:+73954409 MS.gene047241:CDS
CTTACAGTATTTACGGAAGA+GGG 0.523130 2.2:-73955258 None:intergenic
TCGCTTTCATGTACCTCACC+AGG 0.525613 2.2:+73954546 MS.gene047241:CDS
TGAAAAGTCGAGCAGTGCAT+TGG 0.525633 2.2:-73954985 None:intergenic
GATATAAATGTTGAAGAGAT+GGG 0.527961 2.2:-73954618 None:intergenic
GCGAGCAAAGAGGTAACAAA+TGG 0.530365 2.2:-73955489 None:intergenic
CTGATATTCAGCTTAAGCAC+TGG 0.530590 2.2:+73955162 MS.gene047241:CDS
CAGCTTAAGCACTGGCGCAA+AGG 0.531196 2.2:+73955170 MS.gene047241:CDS
GCTTACAGTATTTACGGAAG+AGG 0.538011 2.2:-73955259 None:intergenic
TGGAACATATTCAGGAAGGT+TGG 0.538336 2.2:-73955311 None:intergenic
GAACAGTCACATGGGTCGAC+TGG 0.550051 2.2:+73955354 MS.gene047241:CDS
GATGTTGGAAGGATGAAGAA+AGG 0.550089 2.2:-73954435 None:intergenic
AAATTAAAAGTTCATGACTT+CGG 0.551140 2.2:-73955555 None:intergenic
CAACAAGGGTAAAGGTCCCC+TGG 0.554561 2.2:-73954564 None:intergenic
GAAGCATATTGCGGCTGTAG+CGG 0.557435 2.2:-73955139 None:intergenic
GATTGGATGGCGAGGATGCG+TGG 0.560283 2.2:+73954032 None:intergenic
TTCTTGGGGAACAGTTACTC+TGG 0.561336 2.2:+73954938 MS.gene047241:CDS
ACCTTCCTGAATATGTTCCA+TGG 0.561364 2.2:+73955314 MS.gene047241:CDS
ACTGGCGCAAAGGCTCTCAA+TGG 0.562161 2.2:+73955180 MS.gene047241:CDS
AGCAAGGGCTCCAATGCACT+GGG 0.565315 2.2:-73955521 None:intergenic
GGGAGGGACAATATAACTGT+TGG 0.573155 2.2:+73955407 MS.gene047241:CDS
CAACATATCCTCCTCTTCGG+AGG 0.575606 2.2:-73954408 None:intergenic
TTCGGAAGAGAGGTCAAGCA+AGG 0.577351 2.2:-73955537 None:intergenic
TATCTGAATTATATGGACAA+AGG 0.578382 2.2:-73955460 None:intergenic
TGGGTCGACTGGTCAATGCT+CGG 0.578827 2.2:+73955365 MS.gene047241:CDS
ATATCCTCCTCTTCGGAGGG+GGG 0.578887 2.2:-73954404 None:intergenic
GAAAAGTTGGTGGTCAGAGA+AGG 0.580866 2.2:-73954465 None:intergenic
CTCTGGCCGATGCGGAGAGG+CGG 0.581736 2.2:+73954955 MS.gene047241:CDS
CTCTCCCAGAGTGGCAACAA+GGG 0.584168 2.2:-73954578 None:intergenic
AGTTTAGGTACACGAGCGTA+GGG 0.587019 2.2:-73954524 None:intergenic
TAGTAGCCGCCTCTCCGCAT+CGG 0.587573 2.2:-73954961 None:intergenic
TGTTTGAATTAAGGGAACCA+TGG 0.588224 2.2:-73955331 None:intergenic
TGAGATATCTGTAAACAGTA+GGG 0.589706 2.2:-73955058 None:intergenic
ACATATTCAGGAAGGTTGGA+AGG 0.590150 2.2:-73955307 None:intergenic
AGTTATATTGTCCCTCCCGT+AGG 0.590448 2.2:-73955402 None:intergenic
TCTCTCCCAGAGTGGCAACA+AGG 0.591099 2.2:-73954579 None:intergenic
GTTGGTGGTCAGAGAAGGTG+TGG 0.594958 2.2:-73954460 None:intergenic
ATACAGGCTATAAGGAACAA+TGG 0.597495 2.2:+73955434 MS.gene047241:CDS
CTCATCCGGCAACCTACGGG+AGG 0.602306 2.2:+73955390 MS.gene047241:CDS
AAGGTGTGGGTGATGTTGGA+AGG 0.605998 2.2:-73954446 None:intergenic
GAGTTTAGGTACACGAGCGT+AGG 0.606394 2.2:-73954525 None:intergenic
AACAGTTACTCTGGCCGATG+CGG 0.608462 2.2:+73954947 MS.gene047241:CDS
AGTTCATGACTTCGGAAGAG+AGG 0.611942 2.2:-73955547 None:intergenic
ACATATCCTCCTCTTCGGAG+GGG 0.614099 2.2:-73954406 None:intergenic
GTGGTATTTCTTAGGAACCA+AGG 0.614170 2.2:-73954498 None:intergenic
AAATGTTGAAGAGATGGGAG+TGG 0.614619 2.2:-73954613 None:intergenic
AGGGTAAAGGTCCCCTGGTG+AGG 0.616195 2.2:-73954559 None:intergenic
AAGCCCTCCAGAAAAGTTGG+TGG 0.617230 2.2:-73954475 None:intergenic
AAGCAACAGCAACAGCACTC+TGG 0.619654 2.2:+73954086 MS.gene047241:CDS
CGGCCTCGGCCATAACGGGA+AGG 0.626778 2.2:-73955119 None:intergenic
TTGGAAGGTAGTGTTCATCT+GGG 0.631422 2.2:-73955292 None:intergenic
CGCTTTCATGTACCTCACCA+GGG 0.635577 2.2:+73954547 MS.gene047241:CDS
GAATATAACCAGGAGGAGCG+TGG 0.637995 2.2:-73954640 None:intergenic
CTATATAAACAGCAAGTGCA+CGG 0.643830 2.2:-73955214 None:intergenic
ATTCAAACAGAACAGTCACA+TGG 0.646779 2.2:+73955345 MS.gene047241:CDS
GAATATCAGGAAGCATATTG+CGG 0.649024 2.2:-73955148 None:intergenic
GATCAAACTTGCGAGCAAAG+AGG 0.662138 2.2:-73955499 None:intergenic
TGGATGGCGAGGATGCGTGG+AGG 0.662304 2.2:+73954035 None:intergenic
ACCATGGAACATATTCAGGA+AGG 0.662805 2.2:-73955315 None:intergenic
TCGGAAGAGAGGTCAAGCAA+GGG 0.668978 2.2:-73955536 None:intergenic
TTCAAACAGAACAGTCACAT+GGG 0.669144 2.2:+73955346 MS.gene047241:CDS
TCATCCGGCAACCTACGGGA+GGG 0.670560 2.2:+73955391 MS.gene047241:CDS
TTACTCTGGCCGATGCGGAG+AGG 0.672407 2.2:+73954952 MS.gene047241:CDS
GTAGTGAATGTGAGAAGTTG+TGG 0.678670 2.2:-73954180 None:intergenic
TGAAAGAATCTCTCCCAGAG+TGG 0.689461 2.2:-73954587 None:intergenic
GCTTTCATGTACCTCACCAG+GGG 0.715038 2.2:+73954548 MS.gene047241:CDS
GAAACGTTGAGAATATAACC+AGG 0.715720 2.2:-73954650 None:intergenic
TTGGTGGTCAGAGAAGGTGT+GGG 0.735159 2.2:-73954459 None:intergenic
ACGTTGAGAATATAACCAGG+AGG 0.765757 2.2:-73954647 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAGTTTTGATGATTTAGT+GGG - chr2.2:73954852-73954871 None:intergenic 20.0%
!!! TTATAGTTTTGATGATTTAG+TGG - chr2.2:73954853-73954872 None:intergenic 20.0%
! AAGTTTCCTTGATAGAATTA+AGG - chr2.2:73954727-73954746 None:intergenic 25.0%
! AATGAATTGTTTGTACTTGT+AGG + chr2.2:73954762-73954781 MS.gene047241:intron 25.0%
! AGTTTCCTTGATAGAATTAA+GGG - chr2.2:73954726-73954745 None:intergenic 25.0%
! ATCTGAATTATATGGACAAA+GGG - chr2.2:73955462-73955481 None:intergenic 25.0%
! ATGAATTGTTTGTACTTGTA+GGG + chr2.2:73954763-73954782 MS.gene047241:intron 25.0%
! GAAGTCATATCTGAATTATA+TGG - chr2.2:73955470-73955489 None:intergenic 25.0%
! GATATAAATGTTGAAGAGAT+GGG - chr2.2:73954621-73954640 None:intergenic 25.0%
! GTTTATGATTCATTCATACA+TGG - chr2.2:73954801-73954820 None:intergenic 25.0%
! TATCTGAATTATATGGACAA+AGG - chr2.2:73955463-73955482 None:intergenic 25.0%
! TGAAAATATGAGTAAAGAGA+TGG - chr2.2:73954827-73954846 None:intergenic 25.0%
!!! TATAACTGTTGGTTTTATAC+AGG + chr2.2:73955418-73955437 MS.gene047241:CDS 25.0%
AATATGAGTAAAGAGATGGA+TGG - chr2.2:73954823-73954842 None:intergenic 30.0%
ATGAGATATCTGTAAACAGT+AGG - chr2.2:73955062-73955081 None:intergenic 30.0%
GACTGTTCTGTTTGAATTAA+GGG - chr2.2:73955342-73955361 None:intergenic 30.0%
GGATATAAATGTTGAAGAGA+TGG - chr2.2:73954622-73954641 None:intergenic 30.0%
GTTTCCTTGATAGAATTAAG+GGG - chr2.2:73954725-73954744 None:intergenic 30.0%
TGACTGTTCTGTTTGAATTA+AGG - chr2.2:73955343-73955362 None:intergenic 30.0%
TGAGATATCTGTAAACAGTA+GGG - chr2.2:73955061-73955080 None:intergenic 30.0%
TTTCCTTGATAGAATTAAGG+GGG - chr2.2:73954724-73954743 None:intergenic 30.0%
! TTGTTGTTGTTGTTGTTGTT+GGG - chr2.2:73954320-73954339 None:intergenic 30.0%
!! ATGAGTTTTGTCTTATTCAC+AGG + chr2.2:73954911-73954930 MS.gene047241:intron 30.0%
!!! TTGGTTTTATACAGGCTATA+AGG + chr2.2:73955426-73955445 MS.gene047241:CDS 30.0%
AAGAAGAAGAAGAAGGTTGT+TGG - chr2.2:73954250-73954269 None:intergenic 35.0%
AAGCAGGCTTACAGTATTTA+CGG - chr2.2:73955268-73955287 None:intergenic 35.0%
ACATCAGAAGAAGAAGAAGA+AGG - chr2.2:73954257-73954276 None:intergenic 35.0%
AGAAGAAGAAGAAGGTTGTT+GGG - chr2.2:73954249-73954268 None:intergenic 35.0%
ATACAGGCTATAAGGAACAA+TGG + chr2.2:73955434-73955453 MS.gene047241:CDS 35.0%
ATTCAAACAGAACAGTCACA+TGG + chr2.2:73955345-73955364 MS.gene047241:CDS 35.0%
CTATATAAACAGCAAGTGCA+CGG - chr2.2:73955217-73955236 None:intergenic 35.0%
CTTACAGTATTTACGGAAGA+GGG - chr2.2:73955261-73955280 None:intergenic 35.0%
GAAACGTTGAGAATATAACC+AGG - chr2.2:73954653-73954672 None:intergenic 35.0%
TGTTTGAATTAAGGGAACCA+TGG - chr2.2:73955334-73955353 None:intergenic 35.0%
TTCAAACAGAACAGTCACAT+GGG + chr2.2:73955346-73955365 MS.gene047241:CDS 35.0%
! GAATATCAGGAAGCATATTG+CGG - chr2.2:73955151-73955170 None:intergenic 35.0%
! GTTGTTGTTGTTGTTGTTGT+TGG - chr2.2:73954321-73954340 None:intergenic 35.0%
! TAGGGATAGTGGTATTTCTT+AGG - chr2.2:73954509-73954528 None:intergenic 35.0%
!! TTATTCACAGGCTGTTTCTT+GGG + chr2.2:73954923-73954942 MS.gene047241:intron 35.0%
AAATGTTGAAGAGATGGGAG+TGG - chr2.2:73954616-73954635 None:intergenic 40.0%
ACATATTCAGGAAGGTTGGA+AGG - chr2.2:73955310-73955329 None:intergenic 40.0%
ACCATGGAACATATTCAGGA+AGG - chr2.2:73955318-73955337 None:intergenic 40.0%
ACCTTCCTGAATATGTTCCA+TGG + chr2.2:73955314-73955333 MS.gene047241:CDS 40.0%
ACGTTGAGAATATAACCAGG+AGG - chr2.2:73954650-73954669 None:intergenic 40.0%
AGGTACATGAAAGCGAGTTT+AGG - chr2.2:73954542-73954561 None:intergenic 40.0%
CAGTGCTTAAGCTGAATATC+AGG - chr2.2:73955164-73955183 None:intergenic 40.0%
CATCCCCCTTAATTCTATCA+AGG + chr2.2:73954718-73954737 MS.gene047241:intron 40.0%
CTGATATTCAGCTTAAGCAC+TGG + chr2.2:73955162-73955181 MS.gene047241:CDS 40.0%
GATGTTGGAAGGATGAAGAA+AGG - chr2.2:73954438-73954457 None:intergenic 40.0%
GCTTACAGTATTTACGGAAG+AGG - chr2.2:73955262-73955281 None:intergenic 40.0%
GTAGTGAATGTGAGAAGTTG+TGG - chr2.2:73954183-73954202 None:intergenic 40.0%
GTGGTATTTCTTAGGAACCA+AGG - chr2.2:73954501-73954520 None:intergenic 40.0%
TATGATGATCCTTCCCGTTA+TGG + chr2.2:73955110-73955129 MS.gene047241:CDS 40.0%
TGGAACATATTCAGGAAGGT+TGG - chr2.2:73955314-73955333 None:intergenic 40.0%
TTGGAAGGTAGTGTTCATCT+GGG - chr2.2:73955295-73955314 None:intergenic 40.0%
! GGGATATTGCGTCGATAAAA+GGG - chr2.2:73954686-73954705 None:intergenic 40.0%
! TACGGAAGAGGGAAAAGTAT+TGG - chr2.2:73955250-73955269 None:intergenic 40.0%
! TGGGATATTGCGTCGATAAA+AGG - chr2.2:73954687-73954706 None:intergenic 40.0%
! TGTTGTTGTTGGGTTGTTGT+TGG - chr2.2:73954310-73954329 None:intergenic 40.0%
!! ACGGAAGAGGGAAAAGTATT+GGG - chr2.2:73955249-73955268 None:intergenic 40.0%
!! CTTATTCACAGGCTGTTTCT+TGG + chr2.2:73954922-73954941 MS.gene047241:intron 40.0%
!! TATTCACAGGCTGTTTCTTG+GGG + chr2.2:73954924-73954943 MS.gene047241:intron 40.0%
!!! TTGTTGCTTGTTTTTGCTGC+TGG + chr2.2:73954140-73954159 MS.gene047241:CDS 40.0%
AACATATCCTCCTCTTCGGA+GGG - chr2.2:73954410-73954429 None:intergenic 45.0%
ACAGTAGGGAAGTTGTAGAC+TGG - chr2.2:73955047-73955066 None:intergenic 45.0%
AGTTATATTGTCCCTCCCGT+AGG - chr2.2:73955405-73955424 None:intergenic 45.0%
AGTTCATGACTTCGGAAGAG+AGG - chr2.2:73955550-73955569 None:intergenic 45.0%
AGTTTAGGTACACGAGCGTA+GGG - chr2.2:73954527-73954546 None:intergenic 45.0%
ATTTATATCCACGCTCCTCC+TGG + chr2.2:73954632-73954651 MS.gene047241:CDS 45.0%
CAAGTTTGATCCCAGTGCAT+TGG + chr2.2:73955511-73955530 MS.gene047241:CDS 45.0%
CAGTAGGGAAGTTGTAGACT+GGG - chr2.2:73955046-73955065 None:intergenic 45.0%
CTCCAACATATCCTCCTCTT+CGG - chr2.2:73954414-73954433 None:intergenic 45.0%
GATCAAACTTGCGAGCAAAG+AGG - chr2.2:73955502-73955521 None:intergenic 45.0%
GCGAGCAAAGAGGTAACAAA+TGG - chr2.2:73955492-73955511 None:intergenic 45.0%
GGGAACCATGGAACATATTC+AGG - chr2.2:73955322-73955341 None:intergenic 45.0%
GGGAGGGACAATATAACTGT+TGG + chr2.2:73955407-73955426 MS.gene047241:CDS 45.0%
GTTGGAAGGTAGTGTTCATC+TGG - chr2.2:73955296-73955315 None:intergenic 45.0%
TGAAAAGTCGAGCAGTGCAT+TGG - chr2.2:73954988-73955007 None:intergenic 45.0%
TGAAAGAATCTCTCCCAGAG+TGG - chr2.2:73954590-73954609 None:intergenic 45.0%
TTCTTGGGGAACAGTTACTC+TGG + chr2.2:73954938-73954957 MS.gene047241:CDS 45.0%
TTTACCCTTGTTGCCACTCT+GGG + chr2.2:73954574-73954593 MS.gene047241:CDS 45.0%
! CTCTGGGAGAGATTCTTTCA+AGG + chr2.2:73954590-73954609 MS.gene047241:CDS 45.0%
! GTTGTTGGGTTGTTGTTGGA+GGG - chr2.2:73954306-73954325 None:intergenic 45.0%
! TCTCTGACCACCAACTTTTC+TGG + chr2.2:73954468-73954487 MS.gene047241:CDS 45.0%
! TGACCACCAACTTTTCTGGA+GGG + chr2.2:73954472-73954491 MS.gene047241:CDS 45.0%
! TGTTGTTGGGTTGTTGTTGG+AGG - chr2.2:73954307-73954326 None:intergenic 45.0%
!! GAAAAGTTGGTGGTCAGAGA+AGG - chr2.2:73954468-73954487 None:intergenic 45.0%
!! GCACTCTGGTTTGGTTAGAT+TGG + chr2.2:73954100-73954119 MS.gene047241:CDS 45.0%
AACAGTTACTCTGGCCGATG+CGG + chr2.2:73954947-73954966 MS.gene047241:CDS 50.0%
AAGCAACAGCAACAGCACTC+TGG + chr2.2:73954086-73954105 MS.gene047241:CDS 50.0%
AAGCCCTCCAGAAAAGTTGG+TGG - chr2.2:73954478-73954497 None:intergenic 50.0%
AAGGTGTGGGTGATGTTGGA+AGG - chr2.2:73954449-73954468 None:intergenic 50.0%
ACAGCAACAGCACTCTGGTT+TGG + chr2.2:73954091-73954110 MS.gene047241:CDS 50.0%
ACATATCCTCCTCTTCGGAG+GGG - chr2.2:73954409-73954428 None:intergenic 50.0%
AGGAAGCCCTCCAGAAAAGT+TGG - chr2.2:73954481-73954500 None:intergenic 50.0%
CAACATATCCTCCTCTTCGG+AGG - chr2.2:73954411-73954430 None:intergenic 50.0%
CAGAGTGGCAACAAGGGTAA+AGG - chr2.2:73954575-73954594 None:intergenic 50.0%
CGCTTTCATGTACCTCACCA+GGG + chr2.2:73954547-73954566 MS.gene047241:CDS 50.0%
CTCCGAAGAGGAGGATATGT+TGG + chr2.2:73954409-73954428 MS.gene047241:CDS 50.0%
CTTTACCCTTGTTGCCACTC+TGG + chr2.2:73954573-73954592 MS.gene047241:CDS 50.0%
GAAGCATATTGCGGCTGTAG+CGG - chr2.2:73955142-73955161 None:intergenic 50.0%
GAATATAACCAGGAGGAGCG+TGG - chr2.2:73954643-73954662 None:intergenic 50.0%
GAGTTTAGGTACACGAGCGT+AGG - chr2.2:73954528-73954547 None:intergenic 50.0%
GCTTTCATGTACCTCACCAG+GGG + chr2.2:73954548-73954567 MS.gene047241:CDS 50.0%
TCGACGCAATATCCCAAGTC+AGG + chr2.2:73954691-73954710 MS.gene047241:CDS 50.0%
TCGCTTTCATGTACCTCACC+AGG + chr2.2:73954546-73954565 MS.gene047241:CDS 50.0%
TCGGAAGAGAGGTCAAGCAA+GGG - chr2.2:73955539-73955558 None:intergenic 50.0%
TGTTCATCTGGGTAGCAAGC+AGG - chr2.2:73955284-73955303 None:intergenic 50.0%
TTCGGAAGAGAGGTCAAGCA+AGG - chr2.2:73955540-73955559 None:intergenic 50.0%
! AGAGAAGGTGTGGGTGATGT+TGG - chr2.2:73954453-73954472 None:intergenic 50.0%
! CTGACCACCAACTTTTCTGG+AGG + chr2.2:73954471-73954490 MS.gene047241:CDS 50.0%
! TGCTGTTGCTGTTGCTTCGT+CGG - chr2.2:73954083-73954102 None:intergenic 50.0%
! TTGGTGGTCAGAGAAGGTGT+GGG - chr2.2:73954462-73954481 None:intergenic 50.0%
!! ACTTTTCTGGAGGGCTTCCT+TGG + chr2.2:73954481-73954500 MS.gene047241:CDS 50.0%
!! TTTGCTGCTGGTGTCGTCAT+TGG + chr2.2:73954152-73954171 MS.gene047241:CDS 50.0%
AAGCAAGGGCTCCAATGCAC+TGG - chr2.2:73955525-73955544 None:intergenic 55.0%
ACTGGCGCAAAGGCTCTCAA+TGG + chr2.2:73955180-73955199 MS.gene047241:CDS 55.0%
AGCAAGGGCTCCAATGCACT+GGG - chr2.2:73955524-73955543 None:intergenic 55.0%
AGGGGGATGCATACCTGACT+TGG - chr2.2:73954707-73954726 None:intergenic 55.0%
ATATCCTCCTCTTCGGAGGG+GGG - chr2.2:73954407-73954426 None:intergenic 55.0%
ATGCGTGGAGGAGGAGAAGA+AGG + chr2.2:73954047-73954066 MS.gene047241:CDS 55.0%
CAACAAGGGTAAAGGTCCCC+TGG - chr2.2:73954567-73954586 None:intergenic 55.0%
CATATCCTCCTCTTCGGAGG+GGG - chr2.2:73954408-73954427 None:intergenic 55.0%
CTCTCCCAGAGTGGCAACAA+GGG - chr2.2:73954581-73954600 None:intergenic 55.0%
GAACAGTCACATGGGTCGAC+TGG + chr2.2:73955354-73955373 MS.gene047241:CDS 55.0%
GGGGGATGCATACCTGACTT+GGG - chr2.2:73954706-73954725 None:intergenic 55.0%
GTACACGAGCGTAGGGATAG+TGG - chr2.2:73954520-73954539 None:intergenic 55.0%
GTCAATGCTCGGTCCTCATC+CGG + chr2.2:73955376-73955395 MS.gene047241:CDS 55.0%
TCTCTCCCAGAGTGGCAACA+AGG - chr2.2:73954582-73954601 None:intergenic 55.0%
! TGGGTCGACTGGTCAATGCT+CGG + chr2.2:73955365-73955384 MS.gene047241:CDS 55.0%
!! CAGCTTAAGCACTGGCGCAA+AGG + chr2.2:73955170-73955189 MS.gene047241:CDS 55.0%
!! GTTGGTGGTCAGAGAAGGTG+TGG - chr2.2:73954463-73954482 None:intergenic 55.0%
AGGGTAAAGGTCCCCTGGTG+AGG - chr2.2:73954562-73954581 None:intergenic 60.0%
GATCCTTCCCGTTATGGCCG+AGG + chr2.2:73955116-73955135 MS.gene047241:CDS 60.0%
GGTCCTCATCCGGCAACCTA+CGG + chr2.2:73955386-73955405 MS.gene047241:CDS 60.0%
GTCCTCATCCGGCAACCTAC+GGG + chr2.2:73955387-73955406 MS.gene047241:CDS 60.0%
TAGTAGCCGCCTCTCCGCAT+CGG - chr2.2:73954964-73954983 None:intergenic 60.0%
TATTGCGGCTGTAGCGGCCT+CGG - chr2.2:73955136-73955155 None:intergenic 60.0%
TCATCCGGCAACCTACGGGA+GGG + chr2.2:73955391-73955410 MS.gene047241:CDS 60.0%
TGTAGCGGCCTCGGCCATAA+CGG - chr2.2:73955127-73955146 None:intergenic 60.0%
TTACTCTGGCCGATGCGGAG+AGG + chr2.2:73954952-73954971 MS.gene047241:CDS 60.0%
TTGTCCCTCCCGTAGGTTGC+CGG - chr2.2:73955398-73955417 None:intergenic 60.0%
CTCATCCGGCAACCTACGGG+AGG + chr2.2:73955390-73955409 MS.gene047241:CDS 65.0%
CTCCCGTAGGTTGCCGGATG+AGG - chr2.2:73955392-73955411 None:intergenic 65.0%
GTAGCGGCCTCGGCCATAAC+GGG - chr2.2:73955126-73955145 None:intergenic 65.0%
ACCACCCCCCTCCGAAGAGG+AGG + chr2.2:73954400-73954419 MS.gene047241:CDS 70.0%
CTCTGGCCGATGCGGAGAGG+CGG + chr2.2:73954955-73954974 MS.gene047241:CDS 70.0%
GGAGGAGGAGGAGGAGGAGG+AGG - chr2.2:73954368-73954387 None:intergenic 70.0%
GGTGGAGGAGGAGGAGGAGG+AGG - chr2.2:73954383-73954402 None:intergenic 70.0%
TCCACCACCCCCCTCCGAAG+AGG + chr2.2:73954397-73954416 MS.gene047241:CDS 70.0%
TCCTCCTCTTCGGAGGGGGG+TGG - chr2.2:73954404-73954423 None:intergenic 70.0%
TCCTCTTCGGAGGGGGGTGG+TGG - chr2.2:73954401-73954420 None:intergenic 70.0%
! CGGCCTCGGCCATAACGGGA+AGG - chr2.2:73955122-73955141 None:intergenic 70.0%
! TCTTCGGAGGGGGGTGGTGG+AGG - chr2.2:73954398-73954417 None:intergenic 70.0%
!! GGTGGTGGAGGAGGAGGAGG+AGG - chr2.2:73954386-73954405 None:intergenic 70.0%
!! GAGGGGGGTGGTGGAGGAGG+AGG - chr2.2:73954392-73954411 None:intergenic 75.0%
!! GGGGGTGGTGGAGGAGGAGG+AGG - chr2.2:73954389-73954408 None:intergenic 75.0%
!! TCGGAGGGGGGTGGTGGAGG+AGG - chr2.2:73954395-73954414 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 73954047 73955574 73954047 ID=MS.gene047241
chr2.2 mRNA 73954047 73955574 73954047 ID=MS.gene047241.t1;Parent=MS.gene047241
chr2.2 exon 73954047 73954712 73954047 ID=MS.gene047241.t1.exon1;Parent=MS.gene047241.t1
chr2.2 CDS 73954047 73954712 73954047 ID=cds.MS.gene047241.t1;Parent=MS.gene047241.t1
chr2.2 exon 73954933 73955574 73954933 ID=MS.gene047241.t1.exon2;Parent=MS.gene047241.t1
chr2.2 CDS 73954933 73955574 73954933 ID=cds.MS.gene047241.t1;Parent=MS.gene047241.t1
Gene Sequence

>MS.gene047241

ATGCGTGGAGGAGGAGAAGAAGGAGACAGAGATCCGACGAAGCAACAGCAACAGCACTCTGGTTTGGTTAGATTGGTACAACAACTTGTTACATTGTTGCTTGTTTTTGCTGCTGGTGTCGTCATTGGTTTAACCACAACTTCTCACATTCACTACTTCAATACAAGTCACAACAATAATAACTATCTTCATTTCATTTCCCAACAACCTTCTTCTTCTTCTTCTGATGTCTTCAATCTCGATACTACTATTCACACCCTCCAACAACAACCCAACAACAACAACAACAACAACTGTAACTGTAATTGTACAATCATTGAACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCACCCCCCTCCGAAGAGGAGGATATGTTGGAGTCCTTTCTTCATCCTTCCAACATCACCCACACCTTCTCTGACCACCAACTTTTCTGGAGGGCTTCCTTGGTTCCTAAGAAATACCACTATCCCTACGCTCGTGTACCTAAACTCGCTTTCATGTACCTCACCAGGGGACCTTTACCCTTGTTGCCACTCTGGGAGAGATTCTTTCAAGGCCACTCCCATCTCTTCAACATTTATATCCACGCTCCTCCTGGTTATATTCTCAACGTTTCTGATTCTTCTCCCTTTTATCGACGCAATATCCCAAGTCAGGTATGCATCCCCCTTAATTCTATCAAGGAAACTTCTTTGCTTTTATTTAAATGAATTGTTTGTACTTGTAGGGCTGTAGTATTCACCATGTATGAATGAATCATAAACCATCCATCTCTTTACTCATATTTTCACTCCCACTAAATCATCAAAACTATAATATTAATTTATGTTATTTGTAGAGAGTATTCTATTCTTATGAGTTTTGTCTTATTCACAGGCTGTTTCTTGGGGAACAGTTACTCTGGCCGATGCGGAGAGGCGGCTACTAGCCAATGCACTGCTCGACTTTTCAAATGAGCGCTTTGTTCTACTCTCAGAGAGTTGCATCCCAGTCTACAACTTCCCTACTGTTTACAGATATCTCATTGATTCTGCACACAGCTTTGTTGAGTCATATGATGATCCTTCCCGTTATGGCCGAGGCCGCTACAGCCGCAATATGCTTCCTGATATTCAGCTTAAGCACTGGCGCAAAGGCTCTCAATGGTTCGAACTCAACCGTGCACTTGCTGTTTATATAGTCTCTGACACCCAATACTTTTCCCTCTTCCGTAAATACTGTAAGCCTGCTTGCTACCCAGATGAACACTACCTTCCAACCTTCCTGAATATGTTCCATGGTTCCCTTAATTCAAACAGAACAGTCACATGGGTCGACTGGTCAATGCTCGGTCCTCATCCGGCAACCTACGGGAGGGACAATATAACTGTTGGTTTTATACAGGCTATAAGGAACAATGGATCCCTTTGTCCATATAATTCAGATATGACTTCCATTTGTTACCTCTTTGCTCGCAAGTTTGATCCCAGTGCATTGGAGCCCTTGCTTGACCTCTCTTCCGAAGTCATGAACTTTTAA
Protein sequence

>MS.gene047241.t1

MRGGGEEGDRDPTKQQQQHSGLVRLVQQLVTLLLVFAAGVVIGLTTTSHIHYFNTSHNNNNYLHFISQQPSSSSSDVFNLDTTIHTLQQQPNNNNNNNCNCNCTIIEPPPPPPPPPPPPPPSEEEDMLESFLHPSNITHTFSDHQLFWRASLVPKKYHYPYARVPKLAFMYLTRGPLPLLPLWERFFQGHSHLFNIYIHAPPGYILNVSDSSPFYRRNIPSQAVSWGTVTLADAERRLLANALLDFSNERFVLLSESCIPVYNFPTVYRYLIDSAHSFVESYDDPSRYGRGRYSRNMLPDIQLKHWRKGSQWFELNRALAVYIVSDTQYFSLFRKYCKPACYPDEHYLPTFLNMFHGSLNSNRTVTWVDWSMLGPHPATYGRDNITVGFIQAIRNNGSLCPYNSDMTSICYLFARKFDPSALEPLLDLSSEVMNF