Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029645.t1 | XP_024640437.1 | 99.1 | 443 | 4 | 0 | 1 | 443 | 1 | 443 | 1.40E-247 | 865.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029645.t1 | Q8LJW3 | 74.7 | 454 | 101 | 5 | 1 | 443 | 1 | 451 | 2.8e-185 | 649.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029645.t1 | G7JY63 | 99.1 | 443 | 4 | 0 | 1 | 443 | 9 | 451 | 9.8e-248 | 865.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene001931 | MS.gene029645 | PPI |
| MS.gene86660 | MS.gene029645 | PPI |
| MS.gene029645 | MS.gene99846 | PPI |
| MS.gene88063 | MS.gene029645 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029645.t1 | MTR_5g047260 | 99.097 | 443 | 4 | 0 | 1 | 443 | 9 | 451 | 0.0 | 908 |
| MS.gene029645.t1 | MTR_5g047260 | 94.901 | 353 | 17 | 1 | 1 | 353 | 9 | 360 | 0.0 | 690 |
| MS.gene029645.t1 | MTR_5g047260 | 98.339 | 301 | 5 | 0 | 1 | 301 | 9 | 309 | 0.0 | 616 |
| MS.gene029645.t1 | MTR_7g028050 | 59.729 | 442 | 171 | 4 | 9 | 443 | 1 | 442 | 0.0 | 539 |
| MS.gene029645.t1 | MTR_7g022470 | 58.093 | 451 | 176 | 6 | 3 | 443 | 4 | 451 | 3.83e-176 | 500 |
| MS.gene029645.t1 | MTR_3g088885 | 54.940 | 415 | 174 | 5 | 8 | 410 | 8 | 421 | 5.66e-153 | 441 |
| MS.gene029645.t1 | MTR_4g101950 | 52.489 | 442 | 193 | 4 | 11 | 443 | 8 | 441 | 5.86e-153 | 441 |
| MS.gene029645.t1 | MTR_5g011580 | 51.131 | 442 | 199 | 4 | 11 | 443 | 8 | 441 | 8.56e-147 | 426 |
| MS.gene029645.t1 | MTR_1g029520 | 52.347 | 426 | 182 | 7 | 25 | 429 | 254 | 679 | 1.73e-140 | 418 |
| MS.gene029645.t1 | MTR_7g028050 | 57.440 | 336 | 137 | 3 | 114 | 443 | 4 | 339 | 1.14e-135 | 393 |
| MS.gene029645.t1 | MTR_5g015170 | 46.318 | 421 | 199 | 7 | 9 | 403 | 9 | 428 | 1.23e-119 | 358 |
| MS.gene029645.t1 | MTR_4g097380 | 43.287 | 432 | 215 | 8 | 3 | 410 | 23 | 448 | 1.40e-112 | 340 |
| MS.gene029645.t1 | MTR_1g012740 | 37.607 | 117 | 66 | 2 | 249 | 364 | 34 | 144 | 4.78e-19 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029645.t1 | AT1G69040 | 74.670 | 454 | 101 | 5 | 1 | 443 | 5 | 455 | 0.0 | 678 |
| MS.gene029645.t1 | AT1G69040 | 74.670 | 454 | 101 | 5 | 1 | 443 | 1 | 451 | 0.0 | 678 |
| MS.gene029645.t1 | AT2G03730 | 69.536 | 453 | 121 | 7 | 4 | 441 | 6 | 456 | 0.0 | 615 |
| MS.gene029645.t1 | AT2G03730 | 69.536 | 453 | 121 | 7 | 4 | 441 | 6 | 456 | 0.0 | 615 |
| MS.gene029645.t1 | AT3G01990 | 64.885 | 393 | 134 | 3 | 10 | 400 | 17 | 407 | 0.0 | 513 |
| MS.gene029645.t1 | AT3G01990 | 64.885 | 393 | 134 | 3 | 10 | 400 | 17 | 407 | 0.0 | 513 |
| MS.gene029645.t1 | AT3G01990 | 64.885 | 393 | 134 | 3 | 10 | 400 | 17 | 407 | 0.0 | 512 |
| MS.gene029645.t1 | AT3G01990 | 64.885 | 393 | 134 | 3 | 10 | 400 | 3 | 393 | 1.18e-180 | 511 |
| MS.gene029645.t1 | AT3G01990 | 64.885 | 393 | 134 | 3 | 10 | 400 | 3 | 393 | 1.18e-180 | 511 |
| MS.gene029645.t1 | AT3G01990 | 64.885 | 393 | 134 | 3 | 10 | 400 | 3 | 393 | 1.60e-180 | 511 |
| MS.gene029645.t1 | AT1G76990 | 56.650 | 406 | 167 | 3 | 8 | 404 | 8 | 413 | 1.88e-156 | 451 |
| MS.gene029645.t1 | AT1G76990 | 56.650 | 406 | 167 | 3 | 8 | 404 | 8 | 413 | 1.88e-156 | 451 |
| MS.gene029645.t1 | AT1G76990 | 56.650 | 406 | 167 | 3 | 8 | 404 | 8 | 413 | 1.88e-156 | 451 |
| MS.gene029645.t1 | AT1G76990 | 56.650 | 406 | 167 | 3 | 8 | 404 | 8 | 413 | 1.88e-156 | 451 |
| MS.gene029645.t1 | AT1G76990 | 56.650 | 406 | 167 | 3 | 8 | 404 | 8 | 413 | 1.88e-156 | 451 |
| MS.gene029645.t1 | AT3G01990 | 65.231 | 325 | 109 | 3 | 10 | 332 | 17 | 339 | 1.45e-148 | 426 |
| MS.gene029645.t1 | AT3G01990 | 64.242 | 330 | 114 | 3 | 10 | 337 | 17 | 344 | 1.69e-148 | 426 |
| MS.gene029645.t1 | AT3G01990 | 64.242 | 330 | 114 | 3 | 10 | 337 | 3 | 330 | 2.24e-148 | 426 |
| MS.gene029645.t1 | AT1G12420 | 52.036 | 442 | 195 | 7 | 11 | 443 | 8 | 441 | 2.11e-145 | 422 |
| MS.gene029645.t1 | AT4G22780 | 49.115 | 452 | 199 | 8 | 11 | 442 | 8 | 448 | 4.60e-136 | 399 |
| MS.gene029645.t1 | AT4G22780 | 30.233 | 172 | 100 | 3 | 5 | 171 | 214 | 370 | 2.18e-12 | 68.9 |
| MS.gene029645.t1 | AT4G22780 | 49.115 | 452 | 199 | 8 | 11 | 442 | 8 | 448 | 4.60e-136 | 399 |
| MS.gene029645.t1 | AT4G22780 | 30.233 | 172 | 100 | 3 | 5 | 171 | 214 | 370 | 2.18e-12 | 68.9 |
| MS.gene029645.t1 | AT3G01990 | 64.828 | 290 | 98 | 3 | 10 | 297 | 17 | 304 | 3.07e-127 | 371 |
| MS.gene029645.t1 | AT3G01990 | 64.828 | 290 | 98 | 3 | 10 | 297 | 3 | 290 | 4.47e-127 | 370 |
| MS.gene029645.t1 | AT5G25320 | 43.573 | 459 | 215 | 8 | 8 | 422 | 8 | 466 | 3.50e-126 | 375 |
| MS.gene029645.t1 | AT5G25320 | 43.794 | 427 | 198 | 6 | 38 | 422 | 1 | 427 | 3.92e-120 | 358 |
| MS.gene029645.t1 | AT5G65890 | 40.592 | 473 | 216 | 9 | 1 | 423 | 2 | 459 | 3.08e-112 | 338 |
| MS.gene029645.t1 | AT5G65890 | 40.592 | 473 | 216 | 9 | 1 | 423 | 2 | 459 | 3.08e-112 | 338 |
| MS.gene029645.t1 | AT1G12420 | 48.806 | 377 | 176 | 7 | 76 | 443 | 1 | 369 | 2.83e-110 | 330 |
| MS.gene029645.t1 | AT5G25320 | 42.623 | 366 | 169 | 7 | 8 | 332 | 8 | 373 | 1.05e-95 | 293 |
| MS.gene029645.t1 | AT5G65890 | 40.241 | 415 | 197 | 9 | 52 | 423 | 1 | 407 | 2.06e-92 | 286 |
| MS.gene029645.t1 | AT5G65890 | 40.241 | 415 | 197 | 9 | 52 | 423 | 1 | 407 | 2.06e-92 | 286 |
| MS.gene029645.t1 | AT5G65890 | 39.466 | 337 | 161 | 7 | 122 | 423 | 17 | 345 | 2.40e-71 | 229 |
Find 84 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAACAGATGAAGTCATTT+TGG | 0.193644 | 5.4:-37240959 | MS.gene029645:CDS |
| CTCCAAATGCCACTGTTATA+AGG | 0.222940 | 5.4:-37241355 | MS.gene029645:CDS |
| TTCTATGTTCGCGGAGCTTC+TGG | 0.235707 | 5.4:-37239234 | MS.gene029645:CDS |
| CTGTTACCTTGTTTCCATCT+TGG | 0.252705 | 5.4:+37240974 | None:intergenic |
| TTCAGGGTTGTAATTGATAA+TGG | 0.278263 | 5.4:-37241383 | MS.gene029645:intron |
| CCACACAGCAATTGAGCTTA+TGG | 0.292730 | 5.4:-37240755 | MS.gene029645:CDS |
| TTCTGATGGTGGATGGTTCA+TGG | 0.305458 | 5.4:-37241118 | MS.gene029645:CDS |
| CATTCACTATGTTGCATTTG+AGG | 0.340042 | 5.4:+37240683 | None:intergenic |
| GTTACCAATTGTTTGCCTAA+TGG | 0.351693 | 5.4:+37239182 | None:intergenic |
| ATCAGATGATGTTTGATGAT+AGG | 0.358215 | 5.4:-37240462 | MS.gene029645:CDS |
| TATTACATCAAGCATATAGA+TGG | 0.358620 | 5.4:-37240084 | MS.gene029645:CDS |
| CTCACTTCTGAAAGCAATCC+TGG | 0.377119 | 5.4:+37240721 | None:intergenic |
| CTAAAGATTGATGATCTTGT+AGG | 0.380245 | 5.4:+37239111 | None:intergenic |
| ACCCTTATAACAGTGGCATT+TGG | 0.386153 | 5.4:+37241353 | None:intergenic |
| TCCAAATGCCACTGTTATAA+GGG | 0.388624 | 5.4:-37241354 | MS.gene029645:intron |
| TGAGGGGCCACAAGCATATC+AGG | 0.390122 | 5.4:-37240251 | MS.gene029645:intron |
| GTAGTTGGAAAGCATGATTC+AGG | 0.390558 | 5.4:+37240811 | None:intergenic |
| TACGTGTTACGTTCGATAAT+AGG | 0.395501 | 5.4:+37239328 | None:intergenic |
| CTGTTGTTACTATTGAATGT+AGG | 0.402093 | 5.4:-37240354 | MS.gene029645:CDS |
| TCAGATGATGTTTGATGATA+GGG | 0.410378 | 5.4:-37240461 | MS.gene029645:CDS |
| CTAAGACAATTGAATCCATT+AGG | 0.420076 | 5.4:-37239197 | MS.gene029645:CDS |
| TATTTATGGATTTAGTCTCT+TGG | 0.422919 | 5.4:-37240835 | MS.gene029645:intron |
| ACATAGTGAATGCGGAGGTT+TGG | 0.430916 | 5.4:-37240672 | MS.gene029645:CDS |
| ACAAGATCATCAATCTTTAG+TGG | 0.431730 | 5.4:-37239108 | MS.gene029645:CDS |
| TGTTGTTACTATTGAATGTA+GGG | 0.432062 | 5.4:-37240353 | MS.gene029645:CDS |
| ATGTGCTTGGTGGTGGAAAC+AGG | 0.437113 | 5.4:-37240543 | MS.gene029645:CDS |
| GAATCCATTAGGCAAACAAT+TGG | 0.439461 | 5.4:-37239186 | MS.gene029645:CDS |
| AGATGGGTCCCCTGTAAAAT+CGG | 0.455144 | 5.4:-37240067 | MS.gene029645:CDS |
| CTGTGTAATGTGCTTGGTGG+TGG | 0.460185 | 5.4:-37240550 | MS.gene029645:CDS |
| AACACAATACTCAAAGTAAA+GGG | 0.460429 | 5.4:-37239162 | MS.gene029645:CDS |
| ACATTTCTTCTGATGGTGGA+TGG | 0.466352 | 5.4:-37241125 | MS.gene029645:CDS |
| CACACAGCAATTGAGCTTAT+GGG | 0.471074 | 5.4:-37240754 | MS.gene029645:CDS |
| CCAACAGATCTCATAGTAGT+TGG | 0.479948 | 5.4:+37240796 | None:intergenic |
| CATGTGACCGACGAGGAAAC+AGG | 0.483221 | 5.4:-37240619 | MS.gene029645:CDS |
| CTATTCTCAGTCTCATTACA+TGG | 0.487826 | 5.4:-37241539 | MS.gene029645:CDS |
| ATTCGACGCATACTGATAGA+AGG | 0.487974 | 5.4:-37240489 | MS.gene029645:CDS |
| TAACACAATACTCAAAGTAA+AGG | 0.491332 | 5.4:-37239163 | MS.gene029645:CDS |
| TCTAAATCTCATCATAACTA+AGG | 0.492141 | 5.4:-37241151 | MS.gene029645:CDS |
| TTTGACAGATATGCAATATG+TGG | 0.492908 | 5.4:-37240296 | MS.gene029645:CDS |
| ACAGTGTCGAAAACAAGCTT+TGG | 0.494289 | 5.4:+37240325 | None:intergenic |
| TTGAGCTTATGGGAAGTGAT+AGG | 0.497563 | 5.4:-37240744 | MS.gene029645:CDS |
| GTTAACACTTTCTATGTTCG+CGG | 0.497796 | 5.4:-37239243 | MS.gene029645:CDS |
| CAGTTCACGACATCAACATT+TGG | 0.497921 | 5.4:+37240394 | None:intergenic |
| AGAATAGCCTCACAGTTACA+AGG | 0.500098 | 5.4:-37239296 | MS.gene029645:CDS |
| AAGGCTTACATTTCTTCTGA+TGG | 0.503999 | 5.4:-37241132 | MS.gene029645:CDS |
| TTTAATGTAACTGACCAAGA+TGG | 0.522792 | 5.4:-37240988 | MS.gene029645:CDS |
| CATGCTAATATTGATGCTGA+GGG | 0.531891 | 5.4:-37240268 | MS.gene029645:CDS |
| CAAATGTTGATGTCGTGAAC+TGG | 0.533777 | 5.4:-37240393 | MS.gene029645:CDS |
| GAGCTTCTGTGTAATGTGCT+TGG | 0.535698 | 5.4:-37240556 | MS.gene029645:CDS |
| CGATAATAGGCCAACTCTGT+CGG | 0.536108 | 5.4:+37239341 | None:intergenic |
| ACAGAGGCTTTCGCTAATCA+AGG | 0.537275 | 5.4:-37240578 | MS.gene029645:CDS |
| GCTTACATTTCTTCTGATGG+TGG | 0.539478 | 5.4:-37241129 | MS.gene029645:CDS |
| TCATGCTAATATTGATGCTG+AGG | 0.542296 | 5.4:-37240269 | MS.gene029645:CDS |
| TTACTATTGAATGTAGGGAT+AGG | 0.544712 | 5.4:-37240348 | MS.gene029645:CDS |
| AGCAGAACCTGTTTCCTCGT+CGG | 0.554657 | 5.4:+37240612 | None:intergenic |
| TGTCGTGAACTGGTCTGATA+AGG | 0.559634 | 5.4:-37240383 | MS.gene029645:CDS |
| CTCTGCACCACCGACAGAGT+TGG | 0.561892 | 5.4:-37239351 | MS.gene029645:CDS |
| CTTCTGTGTAATGTGCTTGG+TGG | 0.570795 | 5.4:-37240553 | MS.gene029645:CDS |
| GGTGGTGGAAACAGGAAAAG+AGG | 0.576386 | 5.4:-37240535 | MS.gene029645:CDS |
| CCAACTACTATGAGATCTGT+TGG | 0.577524 | 5.4:-37240796 | MS.gene029645:CDS |
| TGTTGGTGTTAAACAAACAC+TGG | 0.585143 | 5.4:-37240779 | MS.gene029645:CDS |
| ATTACATCAAGCATATAGAT+GGG | 0.598451 | 5.4:-37240083 | MS.gene029645:CDS |
| GAATCTTGAGGTACAGACTC+AGG | 0.602348 | 5.4:+37239135 | None:intergenic |
| TATTGAGAGAAGAGTTTCTG+AGG | 0.605394 | 5.4:-37240004 | MS.gene029645:intron |
| TATAACAGTGGCATTTGGAG+AGG | 0.614763 | 5.4:+37241358 | None:intergenic |
| TTAGAAGAATGAATCCTCCA+AGG | 0.618708 | 5.4:-37241495 | MS.gene029645:intron |
| CTTATGGGAAGTGATAGGCC+AGG | 0.622902 | 5.4:-37240739 | MS.gene029645:CDS |
| GCAGAAGTAACAACGAAAGG+AGG | 0.625698 | 5.4:-37239273 | MS.gene029645:CDS |
| AGGGCAGAAGTAACAACGAA+AGG | 0.626664 | 5.4:-37239276 | MS.gene029645:CDS |
| GAATAGCCTCACAGTTACAA+GGG | 0.627441 | 5.4:-37239295 | MS.gene029645:CDS |
| GTTGATAGTGCTAACAAACA+AGG | 0.636397 | 5.4:-37241207 | MS.gene029645:CDS |
| ATATATACCTGATATGCTTG+TGG | 0.647448 | 5.4:+37240244 | None:intergenic |
| AACTGACCAAGATGGAAACA+AGG | 0.648970 | 5.4:-37240980 | MS.gene029645:CDS |
| CTTCTGCCCTTGTAACTGTG+AGG | 0.651693 | 5.4:+37239289 | None:intergenic |
| TAATAGGCCAACTCTGTCGG+TGG | 0.652365 | 5.4:+37239344 | None:intergenic |
| CCATAAGCTCAATTGCTGTG+TGG | 0.654498 | 5.4:+37240755 | None:intergenic |
| GATGGTGGATGGTTCATGGA+TGG | 0.659799 | 5.4:-37241114 | MS.gene029645:intron |
| TAAACATACCCTTATAACAG+TGG | 0.663440 | 5.4:+37241346 | None:intergenic |
| CAAATGCAACATAGTGAATG+CGG | 0.668006 | 5.4:-37240680 | MS.gene029645:CDS |
| GATCTTGTAGGAGAATCTTG+AGG | 0.691540 | 5.4:+37239123 | None:intergenic |
| ATGCAACATAGTGAATGCGG+AGG | 0.703276 | 5.4:-37240677 | MS.gene029645:CDS |
| ATGCTAATATTGATGCTGAG+GGG | 0.720303 | 5.4:-37240267 | MS.gene029645:CDS |
| CTGCTATAACTGACTCACAG+AGG | 0.754139 | 5.4:-37240594 | MS.gene029645:CDS |
| TGTGATGCATGTGACCGACG+AGG | 0.784173 | 5.4:-37240626 | MS.gene029645:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTACTAAAATATTGTTT+AGG | + | chr5.4:37241064-37241083 | None:intergenic | 10.0% |
| !! | TATATTTGATTGTATATTGT+AGG | - | chr5.4:37240488-37240507 | MS.gene029645:CDS | 15.0% |
| !! | TCATAAATTAGTAAATTAAG+TGG | + | chr5.4:37240785-37240804 | None:intergenic | 15.0% |
| !! | TTAATCTTTACAAATAAACA+TGG | - | chr5.4:37240388-37240407 | MS.gene029645:CDS | 15.0% |
| !! | TTTATTTGTAAAGATTAAAG+TGG | + | chr5.4:37240386-37240405 | None:intergenic | 15.0% |
| !!! | AAAGTTAATTTGTATTTTGT+AGG | - | chr5.4:37239368-37239387 | MS.gene029645:CDS | 15.0% |
| !!! | AAGTTTGATTTTTTATGTTT+TGG | - | chr5.4:37239576-37239595 | MS.gene029645:intron | 15.0% |
| !!! | ATTTTTGCTAAATGTTAAAA+TGG | + | chr5.4:37239142-37239161 | None:intergenic | 15.0% |
| !!! | TCACATGTTATTTAAAATAA+AGG | + | chr5.4:37240925-37240944 | None:intergenic | 15.0% |
| !!! | TTATTTAAAATAAAGGATCA+TGG | + | chr5.4:37240918-37240937 | None:intergenic | 15.0% |
| !!! | TTGTTTTGTTAATTTGTTAA+GGG | - | chr5.4:37241210-37241229 | MS.gene029645:CDS | 15.0% |
| !!! | TTTGTTTTGTTAATTTGTTA+AGG | - | chr5.4:37241209-37241228 | MS.gene029645:CDS | 15.0% |
| !!! | TTTTTTTGTTGTTGAAATTT+TGG | - | chr5.4:37239338-37239357 | MS.gene029645:CDS | 15.0% |
| !! | ACATTGTTTGATTCTATTTA+TGG | - | chr5.4:37239748-37239767 | MS.gene029645:intron | 20.0% |
| !! | ATCATATAACATAGAAAAGT+AGG | + | chr5.4:37240862-37240881 | None:intergenic | 20.0% |
| !!! | ACATGTTTATTTTATACAAG+TGG | - | chr5.4:37241117-37241136 | MS.gene029645:CDS | 20.0% |
| !!! | ATGCTGTAATTTATGTTTTA+TGG | - | chr5.4:37239302-37239321 | MS.gene029645:CDS | 20.0% |
| !!! | TGATAATCTTAACTTTTTGA+GGG | - | chr5.4:37239550-37239569 | MS.gene029645:intron | 20.0% |
| !!! | TTGATAATCTTAACTTTTTG+AGG | - | chr5.4:37239549-37239568 | MS.gene029645:intron | 20.0% |
| ! | AAAAAAAATTAGTACCTTGG+AGG | + | chr5.4:37239119-37239138 | None:intergenic | 25.0% |
| ! | AAAGTAAACTTACAAGATTG+TGG | + | chr5.4:37241009-37241028 | None:intergenic | 25.0% |
| ! | AACACAATACTCAAAGTAAA+GGG | - | chr5.4:37241435-37241454 | MS.gene029645:intron | 25.0% |
| ! | ATACAAGATAAACAATGAAG+AGG | + | chr5.4:37240822-37240841 | None:intergenic | 25.0% |
| ! | ATTACAGCATACTCAAAAAA+AGG | + | chr5.4:37239292-37239311 | None:intergenic | 25.0% |
| ! | ATTACATCAAGCATATAGAT+GGG | - | chr5.4:37240514-37240533 | MS.gene029645:CDS | 25.0% |
| ! | TAACACAATACTCAAAGTAA+AGG | - | chr5.4:37241434-37241453 | MS.gene029645:intron | 25.0% |
| ! | TACAAGATAAACAATGAAGA+GGG | + | chr5.4:37240821-37240840 | None:intergenic | 25.0% |
| ! | TATTACATCAAGCATATAGA+TGG | - | chr5.4:37240513-37240532 | MS.gene029645:CDS | 25.0% |
| ! | TATTTATGGATTTAGTCTCT+TGG | - | chr5.4:37239762-37239781 | MS.gene029645:intron | 25.0% |
| ! | TCTAAATCTCATCATAACTA+AGG | - | chr5.4:37239446-37239465 | MS.gene029645:intron | 25.0% |
| ! | TGGAAAAAAAATTAGTACCT+TGG | + | chr5.4:37239122-37239141 | None:intergenic | 25.0% |
| ! | TGTTAGTACTTAGTTATGTT+TGG | - | chr5.4:37240628-37240647 | MS.gene029645:CDS | 25.0% |
| ! | TGTTGTTACTATTGAATGTA+GGG | - | chr5.4:37240244-37240263 | MS.gene029645:intron | 25.0% |
| !! | ATCTTTTGTTAACTTTGGTT+TGG | - | chr5.4:37241527-37241546 | MS.gene029645:CDS | 25.0% |
| !! | ATTTTATACAAGTGGCAATT+AGG | - | chr5.4:37241125-37241144 | MS.gene029645:CDS | 25.0% |
| !! | CATTTTGGATTACATTAGAA+AGG | - | chr5.4:37239653-37239672 | MS.gene029645:intron | 25.0% |
| !! | TCTAGATCTTTTGTTAACTT+TGG | - | chr5.4:37241522-37241541 | MS.gene029645:CDS | 25.0% |
| !! | TGTAGCTTTTGTTAAAATCA+CGG | + | chr5.4:37240689-37240708 | None:intergenic | 25.0% |
| !!! | GATAATCTTAACTTTTTGAG+GGG | - | chr5.4:37239551-37239570 | MS.gene029645:intron | 25.0% |
| AATCTTGCTAGTTGTGATAA+TGG | - | chr5.4:37240947-37240966 | MS.gene029645:CDS | 30.0% | |
| ACAAGATCATCAATCTTTAG+TGG | - | chr5.4:37241489-37241508 | MS.gene029645:intron | 30.0% | |
| ACTAATTTATGATTTCCTGC+AGG | - | chr5.4:37240793-37240812 | MS.gene029645:CDS | 30.0% | |
| ATATATACCTGATATGCTTG+TGG | + | chr5.4:37240356-37240375 | None:intergenic | 30.0% | |
| CAAACAATGTACATAGTTAG+TGG | + | chr5.4:37239738-37239757 | None:intergenic | 30.0% | |
| CTAAGACAATTGAATCCATT+AGG | - | chr5.4:37241400-37241419 | MS.gene029645:intron | 30.0% | |
| CTAATTTATGATTTCCTGCA+GGG | - | chr5.4:37240794-37240813 | MS.gene029645:CDS | 30.0% | |
| CTGTTGTTACTATTGAATGT+AGG | - | chr5.4:37240243-37240262 | MS.gene029645:intron | 30.0% | |
| GGTTTATAAGGTGATTTCAT+TGG | - | chr5.4:37240458-37240477 | MS.gene029645:CDS | 30.0% | |
| GTACTTAGTTATGTTTGGAT+TGG | - | chr5.4:37240633-37240652 | MS.gene029645:CDS | 30.0% | |
| TAAACATACCCTTATAACAG+TGG | + | chr5.4:37239254-37239273 | None:intergenic | 30.0% | |
| TAGTAAATTAAGTGGATGCT+TGG | + | chr5.4:37240777-37240796 | None:intergenic | 30.0% | |
| TCAGCAAGTAGAAAATAATG+AGG | + | chr5.4:37239186-37239205 | None:intergenic | 30.0% | |
| TTACTATTGAATGTAGGGAT+AGG | - | chr5.4:37240249-37240268 | MS.gene029645:intron | 30.0% | |
| TTCAGGGTTGTAATTGATAA+TGG | - | chr5.4:37239214-37239233 | MS.gene029645:CDS | 30.0% | |
| TTTAATGTAACTGACCAAGA+TGG | - | chr5.4:37239609-37239628 | MS.gene029645:intron | 30.0% | |
| TTTGACAGATATGCAATATG+TGG | - | chr5.4:37240301-37240320 | MS.gene029645:CDS | 30.0% | |
| ! | ATCAGATGATGTTTGATGAT+AGG | - | chr5.4:37240135-37240154 | MS.gene029645:intron | 30.0% |
| ! | CAGTAAATTTTGCAGAATCA+CGG | - | chr5.4:37240656-37240675 | MS.gene029645:CDS | 30.0% |
| ! | CTAAAGATTGATGATCTTGT+AGG | + | chr5.4:37241489-37241508 | None:intergenic | 30.0% |
| ! | TCAGATGATGTTTGATGATA+GGG | - | chr5.4:37240136-37240155 | MS.gene029645:intron | 30.0% |
| !!! | ACTTGCTGATTTGTTTTTTC+AGG | - | chr5.4:37239197-37239216 | MS.gene029645:CDS | 30.0% |
| !!! | CTTGCTGATTTGTTTTTTCA+GGG | - | chr5.4:37239198-37239217 | MS.gene029645:CDS | 30.0% |
| AACTGCTATTCAACTAACCT+TGG | + | chr5.4:37240974-37240993 | None:intergenic | 35.0% | |
| AAGGCTTACATTTCTTCTGA+TGG | - | chr5.4:37239465-37239484 | MS.gene029645:intron | 35.0% | |
| AAGTGGCAATTAGGTATTCT+TGG | - | chr5.4:37241134-37241153 | MS.gene029645:CDS | 35.0% | |
| AGAAAGGTGAGTGTTTCATT+TGG | - | chr5.4:37239669-37239688 | MS.gene029645:intron | 35.0% | |
| ATACATGCTTAGCGAAAAAG+TGG | + | chr5.4:37239521-37239540 | None:intergenic | 35.0% | |
| ATGCTAATATTGATGCTGAG+GGG | - | chr5.4:37240330-37240349 | MS.gene029645:CDS | 35.0% | |
| CAAATGCAACATAGTGAATG+CGG | - | chr5.4:37239917-37239936 | MS.gene029645:intron | 35.0% | |
| CATGCTAATATTGATGCTGA+GGG | - | chr5.4:37240329-37240348 | MS.gene029645:CDS | 35.0% | |
| CATTCACTATGTTGCATTTG+AGG | + | chr5.4:37239917-37239936 | None:intergenic | 35.0% | |
| CTATTCTCAGTCTCATTACA+TGG | - | chr5.4:37239058-37239077 | MS.gene029645:CDS | 35.0% | |
| GAATCCATTAGGCAAACAAT+TGG | - | chr5.4:37241411-37241430 | MS.gene029645:intron | 35.0% | |
| GTTAACACTTTCTATGTTCG+CGG | - | chr5.4:37241354-37241373 | MS.gene029645:intron | 35.0% | |
| GTTACCAATTGTTTGCCTAA+TGG | + | chr5.4:37241418-37241437 | None:intergenic | 35.0% | |
| TACGTGTTACGTTCGATAAT+AGG | + | chr5.4:37241272-37241291 | None:intergenic | 35.0% | |
| TATTGAGAGAAGAGTTTCTG+AGG | - | chr5.4:37240593-37240612 | MS.gene029645:CDS | 35.0% | |
| TCATGCTAATATTGATGCTG+AGG | - | chr5.4:37240328-37240347 | MS.gene029645:CDS | 35.0% | |
| TCCAAATGCCACTGTTATAA+GGG | - | chr5.4:37239243-37239262 | MS.gene029645:CDS | 35.0% | |
| TGAACTGAACCACAATTTGT+TGG | - | chr5.4:37241028-37241047 | MS.gene029645:intron | 35.0% | |
| TGTACTTTGCTGGGTTTATA+AGG | - | chr5.4:37240446-37240465 | MS.gene029645:CDS | 35.0% | |
| TTAGAAGAATGAATCCTCCA+AGG | - | chr5.4:37239102-37239121 | MS.gene029645:CDS | 35.0% | |
| TTTGTCAAGCCAACAAATTG+TGG | + | chr5.4:37241040-37241059 | None:intergenic | 35.0% | |
| ! | GGTAACAGATGAAGTCATTT+TGG | - | chr5.4:37239638-37239657 | MS.gene029645:intron | 35.0% |
| ! | TTTCTGCATCCGATTTTACA+GGG | + | chr5.4:37240542-37240561 | None:intergenic | 35.0% |
| !! | GTTGATAGTGCTAACAAACA+AGG | - | chr5.4:37239390-37239409 | MS.gene029645:intron | 35.0% |
| !! | TGTTGGTGTTAAACAAACAC+TGG | - | chr5.4:37239818-37239837 | MS.gene029645:intron | 35.0% |
| AACTGACCAAGATGGAAACA+AGG | - | chr5.4:37239617-37239636 | MS.gene029645:intron | 40.0% | |
| ACAGACTTGTGAGATTCCTT+TGG | - | chr5.4:37240413-37240432 | MS.gene029645:CDS | 40.0% | |
| ACCCTTATAACAGTGGCATT+TGG | + | chr5.4:37239247-37239266 | None:intergenic | 40.0% | |
| AGAATAGCCTCACAGTTACA+AGG | - | chr5.4:37241301-37241320 | MS.gene029645:intron | 40.0% | |
| ATTCGACGCATACTGATAGA+AGG | - | chr5.4:37240108-37240127 | MS.gene029645:intron | 40.0% | |
| CAAATGTTGATGTCGTGAAC+TGG | - | chr5.4:37240204-37240223 | MS.gene029645:intron | 40.0% | |
| CACACAGCAATTGAGCTTAT+GGG | - | chr5.4:37239843-37239862 | MS.gene029645:intron | 40.0% | |
| CAGTTCACGACATCAACATT+TGG | + | chr5.4:37240206-37240225 | None:intergenic | 40.0% | |
| CCAACAGATCTCATAGTAGT+TGG | + | chr5.4:37239804-37239823 | None:intergenic | 40.0% | |
| CCAACTACTATGAGATCTGT+TGG | - | chr5.4:37239801-37239820 | MS.gene029645:intron | 40.0% | |
| CTCCAAATGCCACTGTTATA+AGG | - | chr5.4:37239242-37239261 | MS.gene029645:CDS | 40.0% | |
| GAATAGCCTCACAGTTACAA+GGG | - | chr5.4:37241302-37241321 | MS.gene029645:intron | 40.0% | |
| GATCTTGTAGGAGAATCTTG+AGG | + | chr5.4:37241477-37241496 | None:intergenic | 40.0% | |
| GCTTACATTTCTTCTGATGG+TGG | - | chr5.4:37239468-37239487 | MS.gene029645:intron | 40.0% | |
| TATAACAGTGGCATTTGGAG+AGG | + | chr5.4:37239242-37239261 | None:intergenic | 40.0% | |
| TTGAGCTTATGGGAAGTGAT+AGG | - | chr5.4:37239853-37239872 | MS.gene029645:intron | 40.0% | |
| ! | ACAGTGTCGAAAACAAGCTT+TGG | + | chr5.4:37240275-37240294 | None:intergenic | 40.0% |
| ! | CTGTTACCTTGTTTCCATCT+TGG | + | chr5.4:37239626-37239645 | None:intergenic | 40.0% |
| ! | CTTTCTGCATCCGATTTTAC+AGG | + | chr5.4:37240543-37240562 | None:intergenic | 40.0% |
| ! | GTAGTTGGAAAGCATGATTC+AGG | + | chr5.4:37239789-37239808 | None:intergenic | 40.0% |
| ! | TTCTGCATCCGATTTTACAG+GGG | + | chr5.4:37240541-37240560 | None:intergenic | 40.0% |
| !! | ACATTTCTTCTGATGGTGGA+TGG | - | chr5.4:37239472-37239491 | MS.gene029645:intron | 40.0% |
| !! | CTAGTTGTGATAATGGTCCA+AGG | - | chr5.4:37240954-37240973 | MS.gene029645:CDS | 40.0% |
| ACAGAGGCTTTCGCTAATCA+AGG | - | chr5.4:37240019-37240038 | MS.gene029645:CDS | 45.0% | |
| ACATAGTGAATGCGGAGGTT+TGG | - | chr5.4:37239925-37239944 | MS.gene029645:intron | 45.0% | |
| AGATGGGTCCCCTGTAAAAT+CGG | - | chr5.4:37240530-37240549 | MS.gene029645:CDS | 45.0% | |
| AGGGCAGAAGTAACAACGAA+AGG | - | chr5.4:37241321-37241340 | MS.gene029645:intron | 45.0% | |
| AGTACAGACCAAGCAACCAA+AGG | + | chr5.4:37240432-37240451 | None:intergenic | 45.0% | |
| ATGCAACATAGTGAATGCGG+AGG | - | chr5.4:37239920-37239939 | MS.gene029645:intron | 45.0% | |
| CCACACAGCAATTGAGCTTA+TGG | - | chr5.4:37239842-37239861 | MS.gene029645:intron | 45.0% | |
| CCATAAGCTCAATTGCTGTG+TGG | + | chr5.4:37239845-37239864 | None:intergenic | 45.0% | |
| CGATAATAGGCCAACTCTGT+CGG | + | chr5.4:37241259-37241278 | None:intergenic | 45.0% | |
| CTTCTGTGTAATGTGCTTGG+TGG | - | chr5.4:37240044-37240063 | MS.gene029645:CDS | 45.0% | |
| GAATCTTGAGGTACAGACTC+AGG | + | chr5.4:37241465-37241484 | None:intergenic | 45.0% | |
| GAGCTTCTGTGTAATGTGCT+TGG | - | chr5.4:37240041-37240060 | MS.gene029645:CDS | 45.0% | |
| GCAGAAGTAACAACGAAAGG+AGG | - | chr5.4:37241324-37241343 | MS.gene029645:intron | 45.0% | |
| GTGAGATTCCTTTGGTTGCT+TGG | - | chr5.4:37240421-37240440 | MS.gene029645:CDS | 45.0% | |
| TGCTTGGTCTGTACTTTGCT+GGG | - | chr5.4:37240437-37240456 | MS.gene029645:CDS | 45.0% | |
| TTGCTTGGTCTGTACTTTGC+TGG | - | chr5.4:37240436-37240455 | MS.gene029645:CDS | 45.0% | |
| ! | CTCACTTCTGAAAGCAATCC+TGG | + | chr5.4:37239879-37239898 | None:intergenic | 45.0% |
| ! | CTGCTATAACTGACTCACAG+AGG | - | chr5.4:37240003-37240022 | MS.gene029645:intron | 45.0% |
| ! | TGTCGTGAACTGGTCTGATA+AGG | - | chr5.4:37240214-37240233 | MS.gene029645:intron | 45.0% |
| !! | AGAGAAGAGTTTCTGAGGTG+AGG | - | chr5.4:37240598-37240617 | MS.gene029645:CDS | 45.0% |
| !! | GAGAAGAGTTTCTGAGGTGA+GGG | - | chr5.4:37240599-37240618 | MS.gene029645:CDS | 45.0% |
| !! | TTCTGATGGTGGATGGTTCA+TGG | - | chr5.4:37239479-37239498 | MS.gene029645:intron | 45.0% |
| AGCAGAACCTGTTTCCTCGT+CGG | + | chr5.4:37239988-37240007 | None:intergenic | 50.0% | |
| CTTATGGGAAGTGATAGGCC+AGG | - | chr5.4:37239858-37239877 | MS.gene029645:intron | 50.0% | |
| CTTCTGCCCTTGTAACTGTG+AGG | + | chr5.4:37241311-37241330 | None:intergenic | 50.0% | |
| TAATAGGCCAACTCTGTCGG+TGG | + | chr5.4:37241256-37241275 | None:intergenic | 50.0% | |
| TTCTATGTTCGCGGAGCTTC+TGG | - | chr5.4:37241363-37241382 | MS.gene029645:CDS | 50.0% | |
| ! | CTGTGTAATGTGCTTGGTGG+TGG | - | chr5.4:37240047-37240066 | MS.gene029645:CDS | 50.0% |
| !! | ATGTGCTTGGTGGTGGAAAC+AGG | - | chr5.4:37240054-37240073 | MS.gene029645:CDS | 50.0% |
| !! | GATGGTGGATGGTTCATGGA+TGG | - | chr5.4:37239483-37239502 | MS.gene029645:intron | 50.0% |
| !! | GGTGGTGGAAACAGGAAAAG+AGG | - | chr5.4:37240062-37240081 | MS.gene029645:CDS | 50.0% |
| ACAATGAAGAGGGTCCCTGC+AGG | + | chr5.4:37240811-37240830 | None:intergenic | 55.0% | |
| CATGTGACCGACGAGGAAAC+AGG | - | chr5.4:37239978-37239997 | MS.gene029645:intron | 55.0% | |
| TGAGGGGCCACAAGCATATC+AGG | - | chr5.4:37240346-37240365 | MS.gene029645:CDS | 55.0% | |
| TGTGATGCATGTGACCGACG+AGG | - | chr5.4:37239971-37239990 | MS.gene029645:intron | 55.0% | |
| CTCTGCACCACCGACAGAGT+TGG | - | chr5.4:37241246-37241265 | MS.gene029645:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 37239053 | 37241566 | 37239053 | ID=MS.gene029645 |
| chr5.4 | mRNA | 37239053 | 37241566 | 37239053 | ID=MS.gene029645.t1;Parent=MS.gene029645 |
| chr5.4 | exon | 37241496 | 37241566 | 37241496 | ID=MS.gene029645.t1.exon1;Parent=MS.gene029645.t1 |
| chr5.4 | CDS | 37241496 | 37241566 | 37241496 | ID=cds.MS.gene029645.t1;Parent=MS.gene029645.t1 |
| chr5.4 | exon | 37241355 | 37241400 | 37241355 | ID=MS.gene029645.t1.exon2;Parent=MS.gene029645.t1 |
| chr5.4 | CDS | 37241355 | 37241400 | 37241355 | ID=cds.MS.gene029645.t1;Parent=MS.gene029645.t1 |
| chr5.4 | exon | 37241115 | 37241229 | 37241115 | ID=MS.gene029645.t1.exon3;Parent=MS.gene029645.t1 |
| chr5.4 | CDS | 37241115 | 37241229 | 37241115 | ID=cds.MS.gene029645.t1;Parent=MS.gene029645.t1 |
| chr5.4 | exon | 37240945 | 37241012 | 37240945 | ID=MS.gene029645.t1.exon4;Parent=MS.gene029645.t1 |
| chr5.4 | CDS | 37240945 | 37241012 | 37240945 | ID=cds.MS.gene029645.t1;Parent=MS.gene029645.t1 |
| chr5.4 | exon | 37240252 | 37240842 | 37240252 | ID=MS.gene029645.t1.exon5;Parent=MS.gene029645.t1 |
| chr5.4 | CDS | 37240252 | 37240842 | 37240252 | ID=cds.MS.gene029645.t1;Parent=MS.gene029645.t1 |
| chr5.4 | exon | 37240005 | 37240109 | 37240005 | ID=MS.gene029645.t1.exon6;Parent=MS.gene029645.t1 |
| chr5.4 | CDS | 37240005 | 37240109 | 37240005 | ID=cds.MS.gene029645.t1;Parent=MS.gene029645.t1 |
| chr5.4 | exon | 37239053 | 37239388 | 37239053 | ID=MS.gene029645.t1.exon7;Parent=MS.gene029645.t1 |
| chr5.4 | CDS | 37239053 | 37239388 | 37239053 | ID=cds.MS.gene029645.t1;Parent=MS.gene029645.t1 |
| Gene Sequence |
| Protein sequence |
