Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99846.t1 | XP_003622131.1 | 99.7 | 299 | 1 | 0 | 1 | 299 | 104 | 402 | 2.70E-167 | 597.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99846.t1 | Q9SGA0 | 71.2 | 299 | 80 | 3 | 1 | 299 | 106 | 398 | 2.5e-113 | 409.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99846.t1 | G7L276 | 99.7 | 299 | 1 | 0 | 1 | 299 | 1 | 299 | 2.0e-167 | 597.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050680 | MS.gene99846 | 0.811845 | 5.71E-51 | -1.69E-46 |
| MS.gene050750 | MS.gene99846 | 0.816877 | 4.41E-52 | -1.69E-46 |
| MS.gene051368 | MS.gene99846 | 0.837838 | 4.10E-57 | -1.69E-46 |
| MS.gene052190 | MS.gene99846 | 0.820217 | 7.71E-53 | -1.69E-46 |
| MS.gene052333 | MS.gene99846 | 0.852635 | 4.06E-61 | -1.69E-46 |
| MS.gene053166 | MS.gene99846 | 0.815664 | 8.23E-52 | -1.69E-46 |
| MS.gene054291 | MS.gene99846 | -0.85583 | 4.85E-62 | -1.69E-46 |
| MS.gene054559 | MS.gene99846 | 0.806907 | 6.55E-50 | -1.69E-46 |
| MS.gene055367 | MS.gene99846 | 0.817771 | 2.77E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene99846 | 0.848812 | 4.83E-60 | -1.69E-46 |
| MS.gene05595 | MS.gene99846 | 0.812283 | 4.58E-51 | -1.69E-46 |
| MS.gene057156 | MS.gene99846 | -0.809623 | 1.73E-50 | -1.69E-46 |
| MS.gene060011 | MS.gene99846 | 0.81359 | 2.37E-51 | -1.69E-46 |
| MS.gene061114 | MS.gene99846 | -0.825688 | 4.09E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene029645 | MS.gene99846 | PPI |
| MS.gene054781 | MS.gene99846 | PPI |
| MS.gene90601 | MS.gene99846 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99846.t1 | MTR_7g028050 | 99.666 | 299 | 1 | 0 | 1 | 299 | 104 | 402 | 0.0 | 612 |
| MS.gene99846.t1 | MTR_7g028050 | 99.666 | 299 | 1 | 0 | 1 | 299 | 1 | 299 | 0.0 | 609 |
| MS.gene99846.t1 | MTR_5g047260 | 59.459 | 296 | 116 | 2 | 4 | 299 | 122 | 413 | 1.32e-125 | 366 |
| MS.gene99846.t1 | MTR_7g022470 | 59.596 | 297 | 113 | 3 | 6 | 299 | 118 | 410 | 1.07e-123 | 361 |
| MS.gene99846.t1 | MTR_5g011580 | 55.944 | 286 | 121 | 2 | 14 | 299 | 114 | 394 | 9.32e-109 | 323 |
| MS.gene99846.t1 | MTR_3g088885 | 52.525 | 297 | 136 | 4 | 5 | 298 | 120 | 414 | 8.29e-100 | 300 |
| MS.gene99846.t1 | MTR_4g101950 | 52.448 | 286 | 131 | 2 | 14 | 299 | 114 | 394 | 3.46e-99 | 298 |
| MS.gene99846.t1 | MTR_1g029520 | 50.502 | 299 | 143 | 3 | 5 | 298 | 350 | 648 | 4.36e-95 | 295 |
| MS.gene99846.t1 | MTR_5g047260 | 56.148 | 244 | 102 | 3 | 4 | 247 | 122 | 360 | 2.83e-92 | 278 |
| MS.gene99846.t1 | MTR_5g015170 | 43.000 | 300 | 159 | 5 | 8 | 297 | 131 | 428 | 4.49e-79 | 248 |
| MS.gene99846.t1 | MTR_5g047260 | 56.250 | 192 | 80 | 2 | 4 | 195 | 122 | 309 | 1.76e-70 | 221 |
| MS.gene99846.t1 | MTR_4g097380 | 40.066 | 302 | 166 | 3 | 9 | 298 | 144 | 442 | 9.01e-69 | 221 |
| MS.gene99846.t1 | MTR_1g012740 | 37.903 | 124 | 70 | 2 | 139 | 261 | 30 | 147 | 5.76e-22 | 90.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99846.t1 | AT3G01990 | 72.109 | 294 | 76 | 3 | 1 | 294 | 120 | 407 | 3.68e-148 | 423 |
| MS.gene99846.t1 | AT3G01990 | 72.109 | 294 | 76 | 3 | 1 | 294 | 120 | 407 | 3.68e-148 | 423 |
| MS.gene99846.t1 | AT3G01990 | 72.109 | 294 | 76 | 3 | 1 | 294 | 120 | 407 | 5.89e-148 | 423 |
| MS.gene99846.t1 | AT3G01990 | 72.109 | 294 | 76 | 3 | 1 | 294 | 106 | 393 | 6.22e-148 | 422 |
| MS.gene99846.t1 | AT3G01990 | 72.109 | 294 | 76 | 3 | 1 | 294 | 106 | 393 | 6.22e-148 | 422 |
| MS.gene99846.t1 | AT3G01990 | 72.109 | 294 | 76 | 3 | 1 | 294 | 106 | 393 | 8.44e-148 | 422 |
| MS.gene99846.t1 | AT1G69040 | 63.300 | 297 | 107 | 2 | 4 | 299 | 112 | 407 | 1.66e-133 | 386 |
| MS.gene99846.t1 | AT1G69040 | 63.300 | 297 | 107 | 2 | 4 | 299 | 116 | 411 | 1.77e-133 | 386 |
| MS.gene99846.t1 | AT2G03730 | 57.980 | 307 | 118 | 4 | 1 | 299 | 116 | 419 | 1.09e-116 | 343 |
| MS.gene99846.t1 | AT2G03730 | 57.980 | 307 | 118 | 4 | 1 | 299 | 116 | 419 | 1.09e-116 | 343 |
| MS.gene99846.t1 | AT3G01990 | 67.965 | 231 | 68 | 3 | 1 | 231 | 120 | 344 | 1.18e-106 | 314 |
| MS.gene99846.t1 | AT3G01990 | 69.469 | 226 | 63 | 3 | 1 | 226 | 120 | 339 | 1.19e-106 | 314 |
| MS.gene99846.t1 | AT3G01990 | 67.965 | 231 | 68 | 3 | 1 | 231 | 106 | 330 | 1.84e-106 | 313 |
| MS.gene99846.t1 | AT1G76990 | 52.525 | 297 | 135 | 4 | 5 | 298 | 120 | 413 | 1.45e-103 | 310 |
| MS.gene99846.t1 | AT1G76990 | 52.525 | 297 | 135 | 4 | 5 | 298 | 120 | 413 | 1.45e-103 | 310 |
| MS.gene99846.t1 | AT1G76990 | 52.525 | 297 | 135 | 4 | 5 | 298 | 120 | 413 | 1.45e-103 | 310 |
| MS.gene99846.t1 | AT1G76990 | 52.525 | 297 | 135 | 4 | 5 | 298 | 120 | 413 | 1.45e-103 | 310 |
| MS.gene99846.t1 | AT1G76990 | 52.525 | 297 | 135 | 4 | 5 | 298 | 120 | 413 | 1.45e-103 | 310 |
| MS.gene99846.t1 | AT1G12420 | 53.546 | 282 | 126 | 2 | 14 | 294 | 42 | 319 | 1.75e-98 | 294 |
| MS.gene99846.t1 | AT4G22780 | 53.710 | 283 | 122 | 3 | 14 | 294 | 114 | 389 | 3.06e-98 | 296 |
| MS.gene99846.t1 | AT4G22780 | 53.710 | 283 | 122 | 3 | 14 | 294 | 114 | 389 | 3.06e-98 | 296 |
| MS.gene99846.t1 | AT1G12420 | 53.546 | 282 | 126 | 2 | 14 | 294 | 114 | 391 | 9.89e-98 | 295 |
| MS.gene99846.t1 | AT5G25320 | 43.730 | 311 | 143 | 4 | 12 | 293 | 94 | 401 | 4.55e-94 | 286 |
| MS.gene99846.t1 | AT5G25320 | 43.730 | 311 | 143 | 4 | 12 | 293 | 133 | 440 | 6.12e-93 | 284 |
| MS.gene99846.t1 | AT3G01990 | 65.969 | 191 | 59 | 3 | 1 | 191 | 120 | 304 | 2.02e-81 | 249 |
| MS.gene99846.t1 | AT3G01990 | 65.969 | 191 | 59 | 3 | 1 | 191 | 106 | 290 | 2.46e-81 | 248 |
| MS.gene99846.t1 | AT5G65890 | 41.722 | 302 | 159 | 4 | 12 | 298 | 17 | 316 | 5.55e-76 | 236 |
| MS.gene99846.t1 | AT5G65890 | 41.722 | 302 | 159 | 4 | 12 | 298 | 79 | 378 | 4.31e-75 | 236 |
| MS.gene99846.t1 | AT5G65890 | 41.722 | 302 | 159 | 4 | 12 | 298 | 79 | 378 | 4.31e-75 | 236 |
| MS.gene99846.t1 | AT5G65890 | 41.722 | 302 | 159 | 4 | 12 | 298 | 131 | 430 | 2.93e-74 | 235 |
| MS.gene99846.t1 | AT5G65890 | 41.722 | 302 | 159 | 4 | 12 | 298 | 131 | 430 | 2.93e-74 | 235 |
| MS.gene99846.t1 | AT5G25320 | 42.510 | 247 | 110 | 4 | 12 | 229 | 133 | 376 | 3.04e-65 | 209 |
Find 76 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTCAGCCTCTGAGCTTA+TGG | 0.227474 | 7.2:-71958439 | None:intergenic |
| TTTGCTCTGTAACGTGCTTC+GGG | 0.287780 | 7.2:+71957573 | MS.gene99846:CDS |
| CGTCCCGCCTCTCCACAATA+AGG | 0.298680 | 7.2:+71957548 | MS.gene99846:CDS |
| CTTTCAGCCTCTGAGCTTAT+GGG | 0.300453 | 7.2:-71958438 | None:intergenic |
| TCAATAATCTTCGGATCAAC+TGG | 0.310582 | 7.2:-71959179 | None:intergenic |
| CACACTGTTATTGAACTTAC+TGG | 0.322113 | 7.2:+71957373 | MS.gene99846:CDS |
| GGAAAGGACAGGGGCTTATC+AGG | 0.324563 | 7.2:+71957888 | MS.gene99846:CDS |
| ATTTGCTCTGTAACGTGCTT+CGG | 0.330102 | 7.2:+71957572 | MS.gene99846:CDS |
| ATCAGATTATGTTTGCTGAT+AGG | 0.355750 | 7.2:+71957668 | MS.gene99846:CDS |
| ACATCCTGGAGTTACGTATA+GGG | 0.365344 | 7.2:+71957633 | MS.gene99846:CDS |
| GGACTTAGAGAAAGAGATAA+AGG | 0.373479 | 7.2:+71957715 | MS.gene99846:CDS |
| TCAGATTATGTTTGCTGATA+GGG | 0.377860 | 7.2:+71957669 | MS.gene99846:CDS |
| CACATCCTGGAGTTACGTAT+AGG | 0.390969 | 7.2:+71957632 | MS.gene99846:CDS |
| GCAGAAATATCAACAGAAAA+CGG | 0.397174 | 7.2:+71959113 | MS.gene99846:CDS |
| GAGGCGGGACGGATCCTCTA+TGG | 0.402741 | 7.2:-71957536 | None:intergenic |
| ACGTGGTAACCGCCGAGATT+TGG | 0.405979 | 7.2:+71957455 | MS.gene99846:CDS |
| CGTCAATGAGAGAGTCTGTT+GGG | 0.427819 | 7.2:+71957332 | None:intergenic |
| AGTATTATGCGTCCAAATCT+CGG | 0.439323 | 7.2:-71957467 | None:intergenic |
| GAGACAGTTACATGCGGAAA+TGG | 0.443364 | 7.2:-71957739 | None:intergenic |
| CAGAAATATCAACAGAAAAC+GGG | 0.444348 | 7.2:+71959114 | MS.gene99846:CDS |
| GTCCCGCCTCTCCACAATAA+GGG | 0.458534 | 7.2:+71957549 | MS.gene99846:CDS |
| CGGATTGAATCAATAATCTT+CGG | 0.460770 | 7.2:-71959188 | None:intergenic |
| GTGGTTCAGACGGAAAGGAC+AGG | 0.466972 | 7.2:+71957877 | MS.gene99846:CDS |
| ATCCTCTATGGCACAACCAC+TGG | 0.470852 | 7.2:-71957524 | None:intergenic |
| ATCCCTTATTGTGGAGAGGC+GGG | 0.479361 | 7.2:-71957551 | None:intergenic |
| TTGCTGATAGGGACTATGAA+AGG | 0.495088 | 7.2:+71957680 | MS.gene99846:CDS |
| CCGTGTCGCCGATCTGTCTA+CGG | 0.499307 | 7.2:-71959208 | None:intergenic |
| TTGTATGCAGGGGATGGAGC+TGG | 0.500842 | 7.2:+71959010 | MS.gene99846:intron |
| TGTCTCAGACTGTACTGAAA+GGG | 0.510423 | 7.2:+71957756 | MS.gene99846:CDS |
| GGACTATGAAAGGGTTGAAA+GGG | 0.513027 | 7.2:+71957690 | MS.gene99846:CDS |
| CGGTTACCACGTTGCAGCGA+AGG | 0.514734 | 7.2:-71957444 | None:intergenic |
| TGAAGCAGCAATTGAGAGGC+GGG | 0.521996 | 7.2:+71958482 | MS.gene99846:CDS |
| GATTCAATCCGTAGACAGAT+CGG | 0.527568 | 7.2:+71959200 | MS.gene99846:CDS |
| AAAACTGCACTTTCACATCC+TGG | 0.532657 | 7.2:+71957619 | MS.gene99846:CDS |
| ACAATATCAAACAACAGCTT+CGG | 0.533003 | 7.2:-71957814 | None:intergenic |
| TGGTTCAGACGGAAAGGACA+GGG | 0.535404 | 7.2:+71957878 | MS.gene99846:CDS |
| CAGATTTCAGATAGTAAACC+AGG | 0.543965 | 7.2:-71957406 | None:intergenic |
| TTCCAGTGGTTGTGCCATAG+AGG | 0.552241 | 7.2:+71957522 | MS.gene99846:CDS |
| GATCGGCGACACGGTACTGC+AGG | 0.560359 | 7.2:+71959217 | MS.gene99846:CDS |
| GGGACTATGAAAGGGTTGAA+AGG | 0.560708 | 7.2:+71957689 | MS.gene99846:CDS |
| CTTACTGGCACAGACAGACC+TGG | 0.568708 | 7.2:+71957388 | MS.gene99846:CDS |
| CTGTCTCAGACTGTACTGAA+AGG | 0.574748 | 7.2:+71957755 | MS.gene99846:CDS |
| CTATCCCTATACGTAACTCC+AGG | 0.576701 | 7.2:-71957637 | None:intergenic |
| TATGAAAGGGTTGAAAGGGC+AGG | 0.577858 | 7.2:+71957694 | MS.gene99846:CDS |
| AGATCGTGTAGGACTCCTCT+CGG | 0.580884 | 7.2:+71959046 | MS.gene99846:CDS |
| ATCATCTGTTACATGAACTA+CGG | 0.581288 | 7.2:-71957500 | None:intergenic |
| AATTGAGAGGCGGGCATCTG+AGG | 0.581375 | 7.2:+71958491 | MS.gene99846:CDS |
| CCGTAGACAGATCGGCGACA+CGG | 0.589318 | 7.2:+71959208 | MS.gene99846:CDS |
| ACAGAGCAAATCCCTTATTG+TGG | 0.596940 | 7.2:-71957560 | None:intergenic |
| ATGGTGTGGTTCAGACGGAA+AGG | 0.597148 | 7.2:+71957872 | MS.gene99846:CDS |
| CTTATTGTGGAGAGGCGGGA+CGG | 0.600464 | 7.2:-71957547 | None:intergenic |
| CAATAATCTTCGGATCAACT+GGG | 0.600617 | 7.2:-71959178 | None:intergenic |
| GCTCAGAGGCTGAAAGAGAA+CGG | 0.602321 | 7.2:+71958445 | MS.gene99846:CDS |
| TGCTGATAGGGACTATGAAA+GGG | 0.606933 | 7.2:+71957681 | MS.gene99846:CDS |
| GTCTTGAAGCAGCAATTGAG+AGG | 0.614016 | 7.2:+71958478 | MS.gene99846:CDS |
| AATCCCTTATTGTGGAGAGG+CGG | 0.617749 | 7.2:-71957552 | None:intergenic |
| ATAACAGTGTGCTCTTCAGT+AGG | 0.619599 | 7.2:-71957361 | None:intergenic |
| TTGAAGCAGCAATTGAGAGG+CGG | 0.631308 | 7.2:+71958481 | MS.gene99846:CDS |
| ACGTCAATGAGAGAGTCTGT+TGG | 0.641528 | 7.2:+71957331 | None:intergenic |
| GCAAATCCCTTATTGTGGAG+AGG | 0.645179 | 7.2:-71957555 | None:intergenic |
| AACTGGGTTACCAGTTACAT+CGG | 0.647131 | 7.2:-71959162 | None:intergenic |
| GACTCCTCTCGGATATCACA+AGG | 0.651775 | 7.2:+71959057 | MS.gene99846:CDS |
| CATGTAACAGATGATTCCAG+TGG | 0.654830 | 7.2:+71957508 | MS.gene99846:CDS |
| TGATACATAAACTGTTCTCG+CGG | 0.658352 | 7.2:-71959085 | None:intergenic |
| TTGCTCTGTAACGTGCTTCG+GGG | 0.668610 | 7.2:+71957574 | MS.gene99846:CDS |
| TGGCTTTCCCATAAGCTCAG+AGG | 0.681534 | 7.2:+71958431 | MS.gene99846:CDS |
| TTGTGCACAGAAGATCGTGT+AGG | 0.682342 | 7.2:+71959035 | MS.gene99846:CDS |
| GTCAATGAGAGAGTCTGTTG+GGG | 0.683733 | 7.2:+71957333 | None:intergenic |
| AATATCAACAGAAAACGGGA+AGG | 0.687354 | 7.2:+71959118 | MS.gene99846:CDS |
| TACTGAAAGGGATTATACTG+TGG | 0.689453 | 7.2:+71957768 | MS.gene99846:CDS |
| AGCAGACCTTCGCTGCAACG+TGG | 0.712880 | 7.2:+71957438 | MS.gene99846:CDS |
| GGTTCAGACGGAAAGGACAG+GGG | 0.713601 | 7.2:+71957879 | MS.gene99846:CDS |
| TTTACTATCTGAAATCTGCG+CGG | 0.727671 | 7.2:+71957411 | MS.gene99846:CDS |
| CAGTCTGAGACAGTTACATG+CGG | 0.730560 | 7.2:-71957745 | None:intergenic |
| AAATCCTTGTGATATCCGAG+AGG | 0.755556 | 7.2:-71959061 | None:intergenic |
| ATTATGCGTCCAAATCTCGG+CGG | 0.824418 | 7.2:-71957464 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATGAAATTCTTATTTT+TGG | - | chr7.2:71958628-71958647 | None:intergenic | 10.0% |
| !! | GTGAATAAAAATTAGTTATA+AGG | - | chr7.2:71958865-71958884 | None:intergenic | 15.0% |
| !!! | TAAGATGTTTTTAAATTGTT+TGG | + | chr7.2:71958908-71958927 | MS.gene99846:intron | 15.0% |
| !!! | TTTTTTTTTCTTCTTTCTTT+TGG | + | chr7.2:71958576-71958595 | MS.gene99846:intron | 15.0% |
| !! | AGAAAGAAGAAAAAAAAACT+AGG | - | chr7.2:71958574-71958593 | None:intergenic | 20.0% |
| !! | CAAAAAACATTACATCTATA+TGG | + | chr7.2:71958223-71958242 | MS.gene99846:intron | 20.0% |
| !!! | CATATAGATGTAATGTTTTT+TGG | - | chr7.2:71958225-71958244 | None:intergenic | 20.0% |
| !!! | TCTTTTCTTTAAAAGAAGTT+AGG | - | chr7.2:71958934-71958953 | None:intergenic | 20.0% |
| !!! | TTGTTTAGGAGTTTTATATT+CGG | + | chr7.2:71958400-71958419 | MS.gene99846:intron | 20.0% |
| ! | AACAATTAACCTAATACCAT+TGG | - | chr7.2:71958693-71958712 | None:intergenic | 25.0% |
| ! | AATGAAACTTAACAGTATAG+AGG | - | chr7.2:71958292-71958311 | None:intergenic | 25.0% |
| ! | AGTATACCATTGAAGAATAA+GGG | - | chr7.2:71958981-71959000 | None:intergenic | 25.0% |
| ! | ATATAAGTGCTTATGCTATA+AGG | - | chr7.2:71958049-71958068 | None:intergenic | 25.0% |
| ! | ATGATAAATAATAACACACC+TGG | + | chr7.2:71958515-71958534 | MS.gene99846:intron | 25.0% |
| ! | CTATACTGTTAAGTTTCATT+CGG | + | chr7.2:71958292-71958311 | MS.gene99846:intron | 25.0% |
| ! | GAAAAAAAAACTAGGCTTAA+TGG | - | chr7.2:71958566-71958585 | None:intergenic | 25.0% |
| ! | TAAATAAGCTGATGTTTGTT+TGG | + | chr7.2:71958643-71958662 | MS.gene99846:intron | 25.0% |
| ! | TAGTATACCATTGAAGAATA+AGG | - | chr7.2:71958982-71959001 | None:intergenic | 25.0% |
| ! | TTATACAGCAAATGCAAATT+AGG | - | chr7.2:71958352-71958371 | None:intergenic | 25.0% |
| !! | AAAGAAAACAGTTTGACTTT+AGG | - | chr7.2:71958101-71958120 | None:intergenic | 25.0% |
| !! | TAGGTTATCTCTTGTTATAA+AGG | - | chr7.2:71958082-71958101 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTGAAACAGCCAA+TGG | + | chr7.2:71958674-71958693 | MS.gene99846:intron | 25.0% |
| ACAAGTACAGAAAACGAAAA+AGG | - | chr7.2:71957961-71957980 | None:intergenic | 30.0% | |
| ACAATATCAAACAACAGCTT+CGG | - | chr7.2:71957817-71957836 | None:intergenic | 30.0% | |
| ACTAAAATACGTTTGTATGC+AGG | + | chr7.2:71958998-71959017 | MS.gene99846:intron | 30.0% | |
| ATCATCTGTTACATGAACTA+CGG | - | chr7.2:71957503-71957522 | None:intergenic | 30.0% | |
| CAGAAATATCAACAGAAAAC+GGG | + | chr7.2:71959114-71959133 | MS.gene99846:CDS | 30.0% | |
| CGGATTGAATCAATAATCTT+CGG | - | chr7.2:71959191-71959210 | None:intergenic | 30.0% | |
| CTAAAATACGTTTGTATGCA+GGG | + | chr7.2:71958999-71959018 | MS.gene99846:intron | 30.0% | |
| GCAGAAATATCAACAGAAAA+CGG | + | chr7.2:71959113-71959132 | MS.gene99846:CDS | 30.0% | |
| TAAAATACGTTTGTATGCAG+GGG | + | chr7.2:71959000-71959019 | MS.gene99846:intron | 30.0% | |
| ! | ATCAGATTATGTTTGCTGAT+AGG | + | chr7.2:71957668-71957687 | MS.gene99846:CDS | 30.0% |
| ! | ATGAGCTTTTCAAATCAAGT+AGG | - | chr7.2:71958788-71958807 | None:intergenic | 30.0% |
| ! | ATGCAGTATGTAGTTTTTCA+TGG | + | chr7.2:71957853-71957872 | MS.gene99846:CDS | 30.0% |
| ! | GAGAATTGTTCATGTTGTTT+AGG | + | chr7.2:71958386-71958405 | MS.gene99846:intron | 30.0% |
| ! | TCAGATTATGTTTGCTGATA+GGG | + | chr7.2:71957669-71957688 | MS.gene99846:CDS | 30.0% |
| ! | TCGTTTTCTGTACTTGTTTA+AGG | + | chr7.2:71957964-71957983 | MS.gene99846:intron | 30.0% |
| ! | TTTTATATTCGGCATGTTGA+TGG | + | chr7.2:71958411-71958430 | MS.gene99846:CDS | 30.0% |
| ! | TTTTCTGTACTTGTTTAAGG+TGG | + | chr7.2:71957967-71957986 | MS.gene99846:intron | 30.0% |
| !! | GTTAATTTGTTAGTATTCGC+TGG | + | chr7.2:71958710-71958729 | MS.gene99846:intron | 30.0% |
| AAACAGAGCCTATGTTTGAT+GGG | - | chr7.2:71958003-71958022 | None:intergenic | 35.0% | |
| AACACACCCTTATTCTTCAA+TGG | + | chr7.2:71958972-71958991 | MS.gene99846:intron | 35.0% | |
| AAGACAATCCCATCAAACAT+AGG | + | chr7.2:71957992-71958011 | MS.gene99846:intron | 35.0% | |
| AATATCAACAGAAAACGGGA+AGG | + | chr7.2:71959118-71959137 | MS.gene99846:CDS | 35.0% | |
| AGTATTATGCGTCCAAATCT+CGG | - | chr7.2:71957470-71957489 | None:intergenic | 35.0% | |
| CAATAATCTTCGGATCAACT+GGG | - | chr7.2:71959181-71959200 | None:intergenic | 35.0% | |
| CACACTGTTATTGAACTTAC+TGG | + | chr7.2:71957373-71957392 | MS.gene99846:CDS | 35.0% | |
| CAGATTTCAGATAGTAAACC+AGG | - | chr7.2:71957409-71957428 | None:intergenic | 35.0% | |
| GGACTTAGAGAAAGAGATAA+AGG | + | chr7.2:71957715-71957734 | MS.gene99846:CDS | 35.0% | |
| TACTGAAAGGGATTATACTG+TGG | + | chr7.2:71957768-71957787 | MS.gene99846:CDS | 35.0% | |
| TCAATAATCTTCGGATCAAC+TGG | - | chr7.2:71959182-71959201 | None:intergenic | 35.0% | |
| TGAAATAAGTCATTCCAACC+AGG | + | chr7.2:71958266-71958285 | MS.gene99846:intron | 35.0% | |
| TGATACATAAACTGTTCTCG+CGG | - | chr7.2:71959088-71959107 | None:intergenic | 35.0% | |
| TTGAAACAGCCAATGGTATT+AGG | + | chr7.2:71958681-71958700 | MS.gene99846:intron | 35.0% | |
| ! | GTATGTAGTTTTTCATGGTG+TGG | + | chr7.2:71957858-71957877 | MS.gene99846:CDS | 35.0% |
| ! | TTTACTATCTGAAATCTGCG+CGG | + | chr7.2:71957411-71957430 | MS.gene99846:CDS | 35.0% |
| !! | ATATTTTGTTGTCTGCCGTT+AGG | + | chr7.2:71957922-71957941 | MS.gene99846:intron | 35.0% |
| !!! | GCTGTTTTAATAAGCTATCC+TGG | + | chr7.2:71958132-71958151 | MS.gene99846:intron | 35.0% |
| !!! | GTTTTTTGGAAGAGTGCTTA+TGG | - | chr7.2:71958211-71958230 | None:intergenic | 35.0% |
| AAAACTGCACTTTCACATCC+TGG | + | chr7.2:71957619-71957638 | MS.gene99846:CDS | 40.0% | |
| AAATCCTTGTGATATCCGAG+AGG | - | chr7.2:71959064-71959083 | None:intergenic | 40.0% | |
| AACTGGGTTACCAGTTACAT+CGG | - | chr7.2:71959165-71959184 | None:intergenic | 40.0% | |
| AACTTAACAGTATAGAGGCC+TGG | - | chr7.2:71958287-71958306 | None:intergenic | 40.0% | |
| ACAGAGCAAATCCCTTATTG+TGG | - | chr7.2:71957563-71957582 | None:intergenic | 40.0% | |
| ACATCCTGGAGTTACGTATA+GGG | + | chr7.2:71957633-71957652 | MS.gene99846:CDS | 40.0% | |
| AGTTTCATTCGGTCAGAACA+TGG | + | chr7.2:71958303-71958322 | MS.gene99846:intron | 40.0% | |
| ATAACAGTGTGCTCTTCAGT+AGG | - | chr7.2:71957364-71957383 | None:intergenic | 40.0% | |
| ATTTGCTCTGTAACGTGCTT+CGG | + | chr7.2:71957572-71957591 | MS.gene99846:CDS | 40.0% | |
| CAAACAGAGCCTATGTTTGA+TGG | - | chr7.2:71958004-71958023 | None:intergenic | 40.0% | |
| CATCAAACATAGGCTCTGTT+TGG | + | chr7.2:71958002-71958021 | MS.gene99846:intron | 40.0% | |
| CATGTAACAGATGATTCCAG+TGG | + | chr7.2:71957508-71957527 | MS.gene99846:CDS | 40.0% | |
| CTTATTTCAAGAAGCTCTCC+AGG | - | chr7.2:71958153-71958172 | None:intergenic | 40.0% | |
| GATTCAATCCGTAGACAGAT+CGG | + | chr7.2:71959200-71959219 | MS.gene99846:CDS | 40.0% | |
| GGACTATGAAAGGGTTGAAA+GGG | + | chr7.2:71957690-71957709 | MS.gene99846:CDS | 40.0% | |
| GGTGAACGATCATTTCCTAA+CGG | - | chr7.2:71957940-71957959 | None:intergenic | 40.0% | |
| GTTTCATTCGGTCAGAACAT+GGG | + | chr7.2:71958304-71958323 | MS.gene99846:intron | 40.0% | |
| TGCTGATAGGGACTATGAAA+GGG | + | chr7.2:71957681-71957700 | MS.gene99846:CDS | 40.0% | |
| TGTCTCAGACTGTACTGAAA+GGG | + | chr7.2:71957756-71957775 | MS.gene99846:CDS | 40.0% | |
| TTGCTGATAGGGACTATGAA+AGG | + | chr7.2:71957680-71957699 | MS.gene99846:CDS | 40.0% | |
| ! | TTTTACGTCACCGATGTAAC+TGG | + | chr7.2:71959152-71959171 | MS.gene99846:CDS | 40.0% |
| ! | TTTTCATGGTGTGGTTCAGA+CGG | + | chr7.2:71957867-71957886 | MS.gene99846:CDS | 40.0% |
| !! | AGTGCAGTTTTTGCTGTCTT+CGG | - | chr7.2:71957610-71957629 | None:intergenic | 40.0% |
| AATCCCTTATTGTGGAGAGG+CGG | - | chr7.2:71957555-71957574 | None:intergenic | 45.0% | |
| ATACGTTTGTATGCAGGGGA+TGG | + | chr7.2:71959004-71959023 | MS.gene99846:intron | 45.0% | |
| ATTATGCGTCCAAATCTCGG+CGG | - | chr7.2:71957467-71957486 | None:intergenic | 45.0% | |
| CACATCCTGGAGTTACGTAT+AGG | + | chr7.2:71957632-71957651 | MS.gene99846:CDS | 45.0% | |
| CTATCCCTATACGTAACTCC+AGG | - | chr7.2:71957640-71957659 | None:intergenic | 45.0% | |
| CTGTCTCAGACTGTACTGAA+AGG | + | chr7.2:71957755-71957774 | MS.gene99846:CDS | 45.0% | |
| CTTTCAGCCTCTGAGCTTAT+GGG | - | chr7.2:71958441-71958460 | None:intergenic | 45.0% | |
| GAGACAGTTACATGCGGAAA+TGG | - | chr7.2:71957742-71957761 | None:intergenic | 45.0% | |
| GCAAATCCCTTATTGTGGAG+AGG | - | chr7.2:71957558-71957577 | None:intergenic | 45.0% | |
| GGGACTATGAAAGGGTTGAA+AGG | + | chr7.2:71957689-71957708 | MS.gene99846:CDS | 45.0% | |
| GTCTTGAAGCAGCAATTGAG+AGG | + | chr7.2:71958478-71958497 | MS.gene99846:CDS | 45.0% | |
| TAACAGTATAGAGGCCTGGT+TGG | - | chr7.2:71958283-71958302 | None:intergenic | 45.0% | |
| TATGAAAGGGTTGAAAGGGC+AGG | + | chr7.2:71957694-71957713 | MS.gene99846:CDS | 45.0% | |
| TCTTTCAGCCTCTGAGCTTA+TGG | - | chr7.2:71958442-71958461 | None:intergenic | 45.0% | |
| TTGAAGCAGCAATTGAGAGG+CGG | + | chr7.2:71958481-71958500 | MS.gene99846:CDS | 45.0% | |
| TTGTGCACAGAAGATCGTGT+AGG | + | chr7.2:71959035-71959054 | MS.gene99846:CDS | 45.0% | |
| TTTGCTCTGTAACGTGCTTC+GGG | + | chr7.2:71957573-71957592 | MS.gene99846:CDS | 45.0% | |
| ! | CAGTCTGAGACAGTTACATG+CGG | - | chr7.2:71957748-71957767 | None:intergenic | 45.0% |
| !! | AAAAAAAAAAAATAGTTATA+AGG | - | chr7.2:71958833-71958852 | None:intergenic | 5.0% |
| !! | AAAATAGATAAAATTATAAA+AGG | + | chr7.2:71958759-71958778 | MS.gene99846:intron | 5.0% |
| !!! | ATAACTATTTTTTTTTTTTT+TGG | + | chr7.2:71958834-71958853 | MS.gene99846:intron | 5.0% |
| AGATCGTGTAGGACTCCTCT+CGG | + | chr7.2:71959046-71959065 | MS.gene99846:CDS | 50.0% | |
| ATCCCTTATTGTGGAGAGGC+GGG | - | chr7.2:71957554-71957573 | None:intergenic | 50.0% | |
| ATCCTCTATGGCACAACCAC+TGG | - | chr7.2:71957527-71957546 | None:intergenic | 50.0% | |
| ATGGTGTGGTTCAGACGGAA+AGG | + | chr7.2:71957872-71957891 | MS.gene99846:CDS | 50.0% | |
| CATTCGGTCAGAACATGGGT+TGG | + | chr7.2:71958308-71958327 | MS.gene99846:intron | 50.0% | |
| CTTAATGGCCACAAAGAGCG+AGG | - | chr7.2:71958551-71958570 | None:intergenic | 50.0% | |
| GACTCCTCTCGGATATCACA+AGG | + | chr7.2:71959057-71959076 | MS.gene99846:CDS | 50.0% | |
| GCTCAGAGGCTGAAAGAGAA+CGG | + | chr7.2:71958445-71958464 | MS.gene99846:CDS | 50.0% | |
| TGAAGCAGCAATTGAGAGGC+GGG | + | chr7.2:71958482-71958501 | MS.gene99846:CDS | 50.0% | |
| TGGCTTTCCCATAAGCTCAG+AGG | + | chr7.2:71958431-71958450 | MS.gene99846:CDS | 50.0% | |
| TGGTTCAGACGGAAAGGACA+GGG | + | chr7.2:71957878-71957897 | MS.gene99846:CDS | 50.0% | |
| TTCCAGTGGTTGTGCCATAG+AGG | + | chr7.2:71957522-71957541 | MS.gene99846:CDS | 50.0% | |
| TTGCTCTGTAACGTGCTTCG+GGG | + | chr7.2:71957574-71957593 | MS.gene99846:CDS | 50.0% | |
| !! | GGGTTGGTCTGCTTCAGTTT+GGG | + | chr7.2:71958324-71958343 | MS.gene99846:intron | 50.0% |
| !! | TGGGTTGGTCTGCTTCAGTT+TGG | + | chr7.2:71958323-71958342 | MS.gene99846:intron | 50.0% |
| AATTGAGAGGCGGGCATCTG+AGG | + | chr7.2:71958491-71958510 | MS.gene99846:CDS | 55.0% | |
| ACGTGGTAACCGCCGAGATT+TGG | + | chr7.2:71957455-71957474 | MS.gene99846:CDS | 55.0% | |
| CTTACTGGCACAGACAGACC+TGG | + | chr7.2:71957388-71957407 | MS.gene99846:CDS | 55.0% | |
| CTTATTGTGGAGAGGCGGGA+CGG | - | chr7.2:71957550-71957569 | None:intergenic | 55.0% | |
| GGAAAGGACAGGGGCTTATC+AGG | + | chr7.2:71957888-71957907 | MS.gene99846:CDS | 55.0% | |
| GGTTCAGACGGAAAGGACAG+GGG | + | chr7.2:71957879-71957898 | MS.gene99846:CDS | 55.0% | |
| GTCCCGCCTCTCCACAATAA+GGG | + | chr7.2:71957549-71957568 | MS.gene99846:CDS | 55.0% | |
| GTGGTTCAGACGGAAAGGAC+AGG | + | chr7.2:71957877-71957896 | MS.gene99846:CDS | 55.0% | |
| TTGTATGCAGGGGATGGAGC+TGG | + | chr7.2:71959010-71959029 | MS.gene99846:intron | 55.0% | |
| AGCAGACCTTCGCTGCAACG+TGG | + | chr7.2:71957438-71957457 | MS.gene99846:CDS | 60.0% | |
| CCGTAGACAGATCGGCGACA+CGG | + | chr7.2:71959208-71959227 | MS.gene99846:CDS | 60.0% | |
| CCGTGTCGCCGATCTGTCTA+CGG | - | chr7.2:71959211-71959230 | None:intergenic | 60.0% | |
| CGGTTACCACGTTGCAGCGA+AGG | - | chr7.2:71957447-71957466 | None:intergenic | 60.0% | |
| CGTCCCGCCTCTCCACAATA+AGG | + | chr7.2:71957548-71957567 | MS.gene99846:CDS | 60.0% | |
| GAGGCGGGACGGATCCTCTA+TGG | - | chr7.2:71957539-71957558 | None:intergenic | 65.0% | |
| GCTCCACGCCTCGCTCTTTG+TGG | + | chr7.2:71958540-71958559 | MS.gene99846:intron | 65.0% | |
| TGGCCACAAAGAGCGAGGCG+TGG | - | chr7.2:71958546-71958565 | None:intergenic | 65.0% | |
| GAGCGAGGCGTGGAGCTTCC+AGG | - | chr7.2:71958536-71958555 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 71957337 | 71959238 | 71957337 | ID=MS.gene99846 |
| chr7.2 | mRNA | 71957337 | 71959238 | 71957337 | ID=MS.gene99846.t1;Parent=MS.gene99846 |
| chr7.2 | exon | 71957337 | 71957909 | 71957337 | ID=MS.gene99846.t1.exon1;Parent=MS.gene99846.t1 |
| chr7.2 | CDS | 71957337 | 71957909 | 71957337 | ID=cds.MS.gene99846.t1;Parent=MS.gene99846.t1 |
| chr7.2 | exon | 71958408 | 71958512 | 71958408 | ID=MS.gene99846.t1.exon2;Parent=MS.gene99846.t1 |
| chr7.2 | CDS | 71958408 | 71958512 | 71958408 | ID=cds.MS.gene99846.t1;Parent=MS.gene99846.t1 |
| chr7.2 | exon | 71959020 | 71959238 | 71959020 | ID=MS.gene99846.t1.exon3;Parent=MS.gene99846.t1 |
| chr7.2 | CDS | 71959020 | 71959238 | 71959020 | ID=cds.MS.gene99846.t1;Parent=MS.gene99846.t1 |
| Gene Sequence |
| Protein sequence |
