Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90787.t1 | XP_003592812.2 | 95.7 | 783 | 19 | 3 | 16 | 793 | 45 | 817 | 0.00E+00 | 1376.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90787.t1 | C8VDQ4 | 32.2 | 317 | 168 | 5 | 217 | 513 | 287 | 576 | 2.5e-35 | 152.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90787.t1 | G7IAX7 | 95.7 | 783 | 19 | 3 | 16 | 793 | 45 | 817 | 0.0e+00 | 1376.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene90787 | 0.819699 | 1.01E-52 | -1.69E-46 |
| MS.gene049159 | MS.gene90787 | 0.815693 | 8.11E-52 | -1.69E-46 |
| MS.gene049341 | MS.gene90787 | 0.823894 | 1.08E-53 | -1.69E-46 |
| MS.gene049695 | MS.gene90787 | 0.814397 | 1.57E-51 | -1.69E-46 |
| MS.gene049850 | MS.gene90787 | 0.814361 | 1.60E-51 | -1.69E-46 |
| MS.gene049887 | MS.gene90787 | 0.81077 | 9.77E-51 | -1.69E-46 |
| MS.gene049979 | MS.gene90787 | 0.81148 | 6.85E-51 | -1.69E-46 |
| MS.gene050020 | MS.gene90787 | 0.835572 | 1.55E-56 | -1.69E-46 |
| MS.gene05016 | MS.gene90787 | 0.82654 | 2.57E-54 | -1.69E-46 |
| MS.gene050237 | MS.gene90787 | 0.810294 | 1.24E-50 | -1.69E-46 |
| MS.gene050438 | MS.gene90787 | 0.81988 | 9.21E-53 | -1.69E-46 |
| MS.gene05045 | MS.gene90787 | 0.813846 | 2.08E-51 | -1.69E-46 |
| MS.gene050586 | MS.gene90787 | 0.816553 | 5.21E-52 | -1.69E-46 |
| MS.gene050719 | MS.gene90787 | 0.832133 | 1.12E-55 | -1.69E-46 |
| MS.gene050721 | MS.gene90787 | 0.833676 | 4.65E-56 | -1.69E-46 |
| MS.gene050724 | MS.gene90787 | 0.831111 | 2.01E-55 | -1.69E-46 |
| MS.gene050778 | MS.gene90787 | 0.820698 | 5.98E-53 | -1.69E-46 |
| MS.gene050780 | MS.gene90787 | 0.832557 | 8.83E-56 | -1.69E-46 |
| MS.gene050807 | MS.gene90787 | 0.875491 | 2.96E-68 | -1.69E-46 |
| MS.gene050808 | MS.gene90787 | 0.868125 | 8.23E-66 | -1.69E-46 |
| MS.gene050815 | MS.gene90787 | 0.819768 | 9.77E-53 | -1.69E-46 |
| MS.gene050826 | MS.gene90787 | 0.803962 | 2.71E-49 | -1.69E-46 |
| MS.gene050959 | MS.gene90787 | 0.851749 | 7.24E-61 | -1.69E-46 |
| MS.gene051180 | MS.gene90787 | 0.802308 | 5.97E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene90787 | 0.834312 | 3.22E-56 | -1.69E-46 |
| MS.gene051388 | MS.gene90787 | 0.835654 | 1.48E-56 | -1.69E-46 |
| MS.gene051577 | MS.gene90787 | 0.805496 | 1.30E-49 | -1.69E-46 |
| MS.gene05157 | MS.gene90787 | 0.810555 | 1.09E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene90787 | 0.842505 | 2.48E-58 | -1.69E-46 |
| MS.gene051720 | MS.gene90787 | 0.829999 | 3.76E-55 | -1.69E-46 |
| MS.gene051744 | MS.gene90787 | 0.815036 | 1.14E-51 | -1.69E-46 |
| MS.gene051789 | MS.gene90787 | 0.806268 | 8.93E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene90787 | 0.835564 | 1.56E-56 | -1.69E-46 |
| MS.gene052133 | MS.gene90787 | 0.837542 | 4.89E-57 | -1.69E-46 |
| MS.gene052323 | MS.gene90787 | 0.838426 | 2.90E-57 | -1.69E-46 |
| MS.gene052516 | MS.gene90787 | 0.8407 | 7.43E-58 | -1.69E-46 |
| MS.gene052611 | MS.gene90787 | 0.837232 | 5.87E-57 | -1.69E-46 |
| MS.gene052612 | MS.gene90787 | 0.802876 | 4.56E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene90787 | 0.880172 | 6.83E-70 | -1.69E-46 |
| MS.gene052732 | MS.gene90787 | 0.814543 | 1.46E-51 | -1.69E-46 |
| MS.gene052773 | MS.gene90787 | 0.811609 | 6.43E-51 | -1.69E-46 |
| MS.gene052856 | MS.gene90787 | 0.811705 | 6.12E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene90787 | 0.823685 | 1.21E-53 | -1.69E-46 |
| MS.gene052896 | MS.gene90787 | 0.838722 | 2.43E-57 | -1.69E-46 |
| MS.gene053074 | MS.gene90787 | 0.801134 | 1.04E-48 | -1.69E-46 |
| MS.gene053144 | MS.gene90787 | 0.851999 | 6.16E-61 | -1.69E-46 |
| MS.gene053174 | MS.gene90787 | 0.811128 | 8.17E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene90787 | 0.807199 | 5.68E-50 | -1.69E-46 |
| MS.gene053437 | MS.gene90787 | 0.80521 | 1.49E-49 | -1.69E-46 |
| MS.gene053563 | MS.gene90787 | 0.818518 | 1.88E-52 | -1.69E-46 |
| MS.gene053565 | MS.gene90787 | 0.827375 | 1.62E-54 | -1.69E-46 |
| MS.gene053581 | MS.gene90787 | 0.82575 | 3.95E-54 | -1.69E-46 |
| MS.gene053599 | MS.gene90787 | 0.804845 | 1.78E-49 | -1.69E-46 |
| MS.gene053630 | MS.gene90787 | 0.843079 | 1.75E-58 | -1.69E-46 |
| MS.gene053998 | MS.gene90787 | 0.809001 | 2.35E-50 | -1.69E-46 |
| MS.gene054250 | MS.gene90787 | 0.803452 | 3.46E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene90787 | 0.814782 | 1.29E-51 | -1.69E-46 |
| MS.gene054472 | MS.gene90787 | 0.822352 | 2.48E-53 | -1.69E-46 |
| MS.gene054550 | MS.gene90787 | 0.816813 | 4.56E-52 | -1.69E-46 |
| MS.gene054584 | MS.gene90787 | 0.84562 | 3.63E-59 | -1.69E-46 |
| MS.gene055227 | MS.gene90787 | 0.812666 | 3.78E-51 | -1.69E-46 |
| MS.gene055357 | MS.gene90787 | 0.804599 | 2.00E-49 | -1.69E-46 |
| MS.gene055363 | MS.gene90787 | 0.810903 | 9.15E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene90787 | 0.819401 | 1.18E-52 | -1.69E-46 |
| MS.gene055466 | MS.gene90787 | 0.825714 | 4.03E-54 | -1.69E-46 |
| MS.gene055468 | MS.gene90787 | 0.81916 | 1.34E-52 | -1.69E-46 |
| MS.gene055469 | MS.gene90787 | 0.801223 | 9.96E-49 | -1.69E-46 |
| MS.gene055512 | MS.gene90787 | 0.844642 | 6.66E-59 | -1.69E-46 |
| MS.gene055818 | MS.gene90787 | 0.81424 | 1.70E-51 | -1.69E-46 |
| MS.gene055890 | MS.gene90787 | 0.809833 | 1.56E-50 | -1.69E-46 |
| MS.gene055891 | MS.gene90787 | 0.808866 | 2.51E-50 | -1.69E-46 |
| MS.gene05604 | MS.gene90787 | 0.808854 | 2.52E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene90787 | 0.800045 | 1.73E-48 | -1.69E-46 |
| MS.gene056173 | MS.gene90787 | 0.822841 | 1.91E-53 | -1.69E-46 |
| MS.gene056366 | MS.gene90787 | 0.824812 | 6.59E-54 | -1.69E-46 |
| MS.gene056432 | MS.gene90787 | 0.810449 | 1.15E-50 | -1.69E-46 |
| MS.gene056543 | MS.gene90787 | 0.807794 | 4.25E-50 | -1.69E-46 |
| MS.gene056545 | MS.gene90787 | 0.803129 | 4.04E-49 | -1.69E-46 |
| MS.gene056553 | MS.gene90787 | 0.842136 | 3.11E-58 | -1.69E-46 |
| MS.gene056760 | MS.gene90787 | 0.85318 | 2.83E-61 | -1.69E-46 |
| MS.gene057060 | MS.gene90787 | 0.811192 | 7.92E-51 | -1.69E-46 |
| MS.gene057444 | MS.gene90787 | 0.82189 | 3.17E-53 | -1.69E-46 |
| MS.gene057446 | MS.gene90787 | 0.818656 | 1.75E-52 | -1.69E-46 |
| MS.gene057869 | MS.gene90787 | 0.835306 | 1.81E-56 | -1.69E-46 |
| MS.gene057915 | MS.gene90787 | 0.824133 | 9.52E-54 | -1.69E-46 |
| MS.gene058010 | MS.gene90787 | 0.805767 | 1.14E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene90787 | 0.81639 | 5.67E-52 | -1.69E-46 |
| MS.gene058636 | MS.gene90787 | 0.846512 | 2.07E-59 | -1.69E-46 |
| MS.gene058851 | MS.gene90787 | 0.801422 | 9.07E-49 | -1.69E-46 |
| MS.gene058852 | MS.gene90787 | 0.826476 | 2.66E-54 | -1.69E-46 |
| MS.gene058906 | MS.gene90787 | 0.820288 | 7.43E-53 | -1.69E-46 |
| MS.gene058982 | MS.gene90787 | 0.848269 | 6.82E-60 | -1.69E-46 |
| MS.gene059713 | MS.gene90787 | 0.840969 | 6.31E-58 | -1.69E-46 |
| MS.gene059725 | MS.gene90787 | 0.827916 | 1.20E-54 | -1.69E-46 |
| MS.gene059863 | MS.gene90787 | 0.802405 | 5.70E-49 | -1.69E-46 |
| MS.gene059937 | MS.gene90787 | 0.842387 | 2.67E-58 | -1.69E-46 |
| MS.gene060312 | MS.gene90787 | 0.81225 | 4.66E-51 | -1.69E-46 |
| MS.gene060322 | MS.gene90787 | 0.816854 | 4.46E-52 | -1.69E-46 |
| MS.gene060480 | MS.gene90787 | 0.831638 | 1.49E-55 | -1.69E-46 |
| MS.gene060587 | MS.gene90787 | 0.841547 | 4.45E-58 | -1.69E-46 |
| MS.gene060619 | MS.gene90787 | 0.801619 | 8.27E-49 | -1.69E-46 |
| MS.gene060803 | MS.gene90787 | 0.803792 | 2.94E-49 | -1.69E-46 |
| MS.gene060998 | MS.gene90787 | 0.811756 | 5.97E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene30888 | MS.gene90787 | PPI |
| MS.gene90787 | MS.gene073802 | PPI |
| MS.gene90787 | MS.gene029887 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90787.t1 | MTR_1g116310 | 95.785 | 783 | 18 | 3 | 16 | 793 | 45 | 817 | 0.0 | 1513 |
| MS.gene90787.t1 | MTR_1g067150 | 59.666 | 719 | 222 | 17 | 73 | 775 | 483 | 1149 | 0.0 | 773 |
| MS.gene90787.t1 | MTR_5g098140 | 33.654 | 312 | 175 | 7 | 214 | 519 | 106 | 391 | 8.54e-49 | 177 |
| MS.gene90787.t1 | MTR_6g016590 | 31.489 | 235 | 127 | 5 | 218 | 445 | 84 | 291 | 2.99e-27 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90787.t1 | AT3G55020 | 64.987 | 794 | 229 | 13 | 16 | 788 | 52 | 817 | 0.0 | 945 |
| MS.gene90787.t1 | AT3G55020 | 68.150 | 719 | 196 | 11 | 16 | 720 | 52 | 751 | 0.0 | 911 |
| MS.gene90787.t1 | AT2G39280 | 63.361 | 726 | 234 | 11 | 16 | 727 | 37 | 744 | 0.0 | 842 |
| MS.gene90787.t1 | AT3G55020 | 66.765 | 677 | 192 | 11 | 16 | 678 | 52 | 709 | 0.0 | 838 |
| MS.gene90787.t1 | AT2G39280 | 62.948 | 726 | 232 | 12 | 16 | 727 | 65 | 767 | 0.0 | 828 |
| MS.gene90787.t1 | AT2G37290 | 58.892 | 686 | 215 | 13 | 93 | 764 | 209 | 841 | 0.0 | 760 |
| MS.gene90787.t1 | AT2G37290 | 59.038 | 686 | 214 | 13 | 93 | 764 | 209 | 841 | 0.0 | 759 |
| MS.gene90787.t1 | AT2G37290 | 56.111 | 720 | 215 | 14 | 93 | 764 | 209 | 875 | 0.0 | 742 |
| MS.gene90787.t1 | AT3G07890 | 34.706 | 340 | 171 | 10 | 190 | 521 | 100 | 396 | 1.68e-51 | 185 |
| MS.gene90787.t1 | AT3G07890 | 34.706 | 340 | 171 | 10 | 190 | 521 | 100 | 396 | 1.68e-51 | 185 |
| MS.gene90787.t1 | AT3G07890 | 34.706 | 340 | 171 | 10 | 190 | 521 | 100 | 396 | 1.68e-51 | 185 |
| MS.gene90787.t1 | AT3G07890 | 34.706 | 340 | 171 | 10 | 190 | 521 | 100 | 396 | 1.68e-51 | 185 |
| MS.gene90787.t1 | AT3G07890 | 34.706 | 340 | 171 | 10 | 190 | 521 | 100 | 396 | 1.68e-51 | 185 |
| MS.gene90787.t1 | AT5G15930 | 32.340 | 235 | 125 | 5 | 218 | 445 | 82 | 289 | 7.01e-29 | 119 |
| MS.gene90787.t1 | AT3G02460 | 30.638 | 235 | 129 | 5 | 218 | 445 | 85 | 292 | 2.21e-25 | 107 |
| MS.gene90787.t1 | AT3G02460 | 30.638 | 235 | 129 | 5 | 218 | 445 | 85 | 292 | 2.23e-25 | 108 |
| MS.gene90787.t1 | AT3G02460 | 30.638 | 235 | 129 | 5 | 218 | 445 | 85 | 292 | 7.86e-25 | 107 |
| MS.gene90787.t1 | AT3G02460 | 30.909 | 220 | 119 | 4 | 218 | 430 | 85 | 278 | 5.35e-23 | 100 |
| MS.gene90787.t1 | AT3G02460 | 30.909 | 220 | 119 | 4 | 218 | 430 | 85 | 278 | 7.84e-23 | 100 |
Find 195 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGAACTTCATTTATATTT+TGG | 0.118339 | 1.4:+88221833 | None:intergenic |
| ATCGGTATACAAACCCAATT+TGG | 0.132514 | 1.4:+88222457 | None:intergenic |
| TAGAACTGCAGTTGCTTTAA+TGG | 0.133261 | 1.4:-88222075 | MS.gene90787:CDS |
| TTTCCCTCATGTTGACTTAC+AGG | 0.231638 | 1.4:+88217017 | None:intergenic |
| AGCCAATCATCTAGATTATC+TGG | 0.233143 | 1.4:-88222341 | MS.gene90787:CDS |
| CTGGCCTCCAATGGTGATTC+TGG | 0.238333 | 1.4:-88223397 | MS.gene90787:CDS |
| GCGGGAGAGGTTTCCCAAAT+TGG | 0.277262 | 1.4:-88222471 | MS.gene90787:CDS |
| TTTCTAGATCCGGGAGATTC+TGG | 0.277675 | 1.4:+88217268 | None:intergenic |
| ATCTTATGGTTGACCATAAC+TGG | 0.286814 | 1.4:+88223939 | None:intergenic |
| GGGGAAGAGAACAAAGTTTC+TGG | 0.290787 | 1.4:-88224103 | MS.gene90787:CDS |
| GGAGCTTGAAACAGCATTAA+TGG | 0.291836 | 1.4:-88219428 | MS.gene90787:CDS |
| ATTCGTGTTAATAAGAAAAC+TGG | 0.298462 | 1.4:-88223884 | MS.gene90787:CDS |
| GATCTGCCGCGGACATTTCC+TGG | 0.303734 | 1.4:-88223160 | MS.gene90787:CDS |
| CTAGATACTCCTCTTGTTGA+TGG | 0.308816 | 1.4:-88223701 | MS.gene90787:CDS |
| CTCTTGATTGTTTCTAGATC+CGG | 0.309833 | 1.4:+88217258 | None:intergenic |
| AATTTATCCCGTACAGAATC+TGG | 0.323143 | 1.4:-88221670 | MS.gene90787:CDS |
| ATATGCTTCCCAAGTGCTTC+AGG | 0.328257 | 1.4:-88218384 | MS.gene90787:intron |
| ACAGGAAACTGCAATGCTTC+AGG | 0.337217 | 1.4:-88218569 | MS.gene90787:intron |
| CTTTCTCGACCATTTGGACT+TGG | 0.337275 | 1.4:-88217199 | MS.gene90787:CDS |
| CGGGAGAGGTTTCCCAAATT+GGG | 0.339474 | 1.4:-88222470 | MS.gene90787:intron |
| CTCGACCATTTGGACTTGGA+TGG | 0.351641 | 1.4:-88217195 | MS.gene90787:CDS |
| GCTGGTTCTTCCACATTAGT+AGG | 0.355189 | 1.4:+88217053 | None:intergenic |
| TCCTTTGTTGTTACCAAGGC+TGG | 0.355345 | 1.4:+88221943 | None:intergenic |
| GTGCAGGTTGCATGGGTGAC+TGG | 0.357360 | 1.4:-88222316 | MS.gene90787:CDS |
| ATTTCCTGGTCACCCTGCTT+TGG | 0.358219 | 1.4:-88223146 | MS.gene90787:CDS |
| TCGAATAATGCGCAAGTGCT+TGG | 0.359101 | 1.4:-88221694 | MS.gene90787:CDS |
| GCTGATACTCCACCTGAAAA+TGG | 0.359223 | 1.4:-88224013 | MS.gene90787:CDS |
| AGTATTAAGAGATGATCTTA+TGG | 0.361165 | 1.4:+88223925 | None:intergenic |
| TATAAATGAAGTTCGATTGC+AGG | 0.367487 | 1.4:-88221827 | MS.gene90787:CDS |
| CACTAGAGGCTTCGTGTCCT+TGG | 0.372322 | 1.4:-88223637 | MS.gene90787:CDS |
| GTTGCTTTAATGGAGCTATA+TGG | 0.372455 | 1.4:-88222065 | MS.gene90787:intron |
| AACTGTTGCACTTGCAGAAA+TGG | 0.384197 | 1.4:-88217717 | MS.gene90787:CDS |
| AGTTTGCTTTCTCGACCATT+TGG | 0.398525 | 1.4:-88217205 | MS.gene90787:CDS |
| AGCTCAGAGAAGGGTGTTGA+TGG | 0.400403 | 1.4:-88224049 | MS.gene90787:CDS |
| CGAATAATGCGCAAGTGCTT+GGG | 0.402971 | 1.4:-88221693 | MS.gene90787:CDS |
| GAGATGGTTGCAGTTTAGTT+TGG | 0.408611 | 1.4:+88217636 | None:intergenic |
| CAAAAGGGCTTAAAGCTTTG+AGG | 0.410424 | 1.4:-88221753 | MS.gene90787:CDS |
| CGTACTCACGGTATCTTTGC+AGG | 0.412476 | 1.4:+88224434 | None:intergenic |
| ACCTCTCCCCTCAGTGCCAT+TGG | 0.417402 | 1.4:+88223578 | None:intergenic |
| TTAACCTGCTCTGGAAGATC+TGG | 0.418284 | 1.4:+88221586 | None:intergenic |
| TAGTCAAAAGGAGGAGTTAC+CGG | 0.426816 | 1.4:-88223990 | MS.gene90787:CDS |
| AATGGAGAAGAGAGCAGTTA+TGG | 0.428862 | 1.4:-88217699 | MS.gene90787:CDS |
| GCAATTGAAGAAAGATCAAA+AGG | 0.430398 | 1.4:-88221769 | MS.gene90787:CDS |
| TTGAAGAGTTGGTGCGGGAG+AGG | 0.436427 | 1.4:-88222484 | MS.gene90787:CDS |
| ATTAAAAGTAATCATCAAAA+CGG | 0.438574 | 1.4:-88223373 | MS.gene90787:CDS |
| TCGACCATTTGGACTTGGAT+GGG | 0.439304 | 1.4:-88217194 | MS.gene90787:CDS |
| AAGACGGAATTAACCTGCTC+TGG | 0.441432 | 1.4:+88221577 | None:intergenic |
| CGACCATTTGGACTTGGATG+GGG | 0.448956 | 1.4:-88217193 | MS.gene90787:CDS |
| TCGGTATACAAACCCAATTT+GGG | 0.454846 | 1.4:+88222458 | None:intergenic |
| GCGGGTAGAGAAGTATTATC+AGG | 0.455990 | 1.4:-88223425 | MS.gene90787:CDS |
| ACTTTCTGATAAACAAGAAC+AGG | 0.458805 | 1.4:-88218587 | MS.gene90787:CDS |
| TGCTGCTGCTGCACCACTAG+AGG | 0.462754 | 1.4:-88223651 | MS.gene90787:CDS |
| ATCTGGGAGTGCAGGTTGCA+TGG | 0.464025 | 1.4:-88222324 | MS.gene90787:CDS |
| AGAGGATATGATAGAGTCTC+AGG | 0.467308 | 1.4:-88222626 | MS.gene90787:intron |
| GAGTTGGAAGTTCTTGTTCG+TGG | 0.469569 | 1.4:-88223608 | MS.gene90787:CDS |
| TCAATTGCAGCTATTACAGC+TGG | 0.470313 | 1.4:+88221784 | None:intergenic |
| CTACCATCCTCGTCCAAAGC+AGG | 0.473442 | 1.4:+88223133 | None:intergenic |
| TCCCTCTGTTGGTTACTGTC+AGG | 0.474299 | 1.4:-88223068 | MS.gene90787:intron |
| GAAGTATTATCAGGATCTAC+TGG | 0.474674 | 1.4:-88223416 | MS.gene90787:CDS |
| AGCTCCAGATCTTCCAGAGC+AGG | 0.477837 | 1.4:-88221590 | MS.gene90787:intron |
| TCCCAGATAATCTAGATGAT+TGG | 0.479830 | 1.4:+88222339 | None:intergenic |
| AAAAGGGCTTAAAGCTTTGA+GGG | 0.481358 | 1.4:-88221752 | MS.gene90787:CDS |
| TTAAAAGTAATCATCAAAAC+GGG | 0.485896 | 1.4:-88223372 | MS.gene90787:CDS |
| TCTTGATTGTTTCTAGATCC+GGG | 0.486136 | 1.4:+88217259 | None:intergenic |
| TGCCTGAGGAAAATGCCTTT+TGG | 0.488127 | 1.4:-88222900 | MS.gene90787:intron |
| GTAAGTCAACATGAGGGAAA+TGG | 0.490157 | 1.4:-88217014 | MS.gene90787:CDS |
| TGGTCACCCTGCTTTGGACG+AGG | 0.490278 | 1.4:-88223140 | MS.gene90787:CDS |
| TACTTCAGTGCTTCGAGTGT+GGG | 0.492239 | 1.4:-88222135 | MS.gene90787:intron |
| TTCCCTCATGTTGACTTACA+GGG | 0.493592 | 1.4:+88217018 | None:intergenic |
| ACCTGAAAATGGTAGTCAAA+AGG | 0.493903 | 1.4:-88224002 | MS.gene90787:CDS |
| AATTCCAGAATCACCATTGG+AGG | 0.496500 | 1.4:+88223393 | None:intergenic |
| AGTTGGAAGTTCTTGTTCGT+GGG | 0.497626 | 1.4:-88223607 | MS.gene90787:CDS |
| ACAGGGCTTTCTACTACAGC+TGG | 0.498797 | 1.4:+88217035 | None:intergenic |
| CGAGACAGAGTCTTCTGTAT+TGG | 0.501438 | 1.4:-88224146 | MS.gene90787:CDS |
| TTTGAGGGATGCTAAGGGTC+TGG | 0.503136 | 1.4:-88221737 | MS.gene90787:CDS |
| CCCTTCTCTGAGCTAGCATC+AGG | 0.503203 | 1.4:+88224058 | None:intergenic |
| AGAAAAGATCAGCTATTCTC+AGG | 0.504550 | 1.4:-88220245 | MS.gene90787:intron |
| CGGTATCTTTGCAGGTGTTG+AGG | 0.504674 | 1.4:+88224442 | None:intergenic |
| AGCATCCTTTGTTGTTACCA+AGG | 0.504710 | 1.4:+88221939 | None:intergenic |
| GGGAGTTCCAATGGCACTGA+GGG | 0.506042 | 1.4:-88223585 | MS.gene90787:CDS |
| GGCTTGAGTACCTCAACAAA+TGG | 0.507338 | 1.4:-88223680 | MS.gene90787:CDS |
| GCGGGTAGAGCAAGAACAAA+AGG | 0.510673 | 1.4:-88218456 | MS.gene90787:CDS |
| TAAAGCTTTGAGGGATGCTA+AGG | 0.510952 | 1.4:-88221743 | MS.gene90787:CDS |
| TTTAATTCCAGAATCACCAT+TGG | 0.511424 | 1.4:+88223390 | None:intergenic |
| GATGGTGCAAAATCATCAAA+AGG | 0.513893 | 1.4:-88223782 | MS.gene90787:CDS |
| ACTTTACTTCAGTCATTAGC+CGG | 0.514238 | 1.4:-88221904 | MS.gene90787:CDS |
| AGATGGTTAAGCAGGACAAC+AGG | 0.514494 | 1.4:-88219405 | MS.gene90787:CDS |
| CTCACTTTATGCAGATTGCA+TGG | 0.515543 | 1.4:-88220299 | MS.gene90787:intron |
| AAAAGGTAACCTGAAGCACT+TGG | 0.516055 | 1.4:+88218375 | None:intergenic |
| CGTTAAAGTACAAGATGAGT+TGG | 0.517468 | 1.4:-88216991 | MS.gene90787:CDS |
| ACTTCCAACTCTTCTTTCCA+AGG | 0.520731 | 1.4:+88223620 | None:intergenic |
| ATCATCTCTTAATACTATTG+AGG | 0.521914 | 1.4:-88223918 | MS.gene90787:CDS |
| TCGTCCAAAGCAGGGTGACC+AGG | 0.522777 | 1.4:+88223142 | None:intergenic |
| ATTAATGGAGATGGTTAAGC+AGG | 0.523073 | 1.4:-88219413 | MS.gene90787:CDS |
| GCAAACTTATCCTCCTGGTA+GGG | 0.524898 | 1.4:+88217221 | None:intergenic |
| GAATTCATAGAGTCCAGTTA+TGG | 0.526092 | 1.4:-88223952 | MS.gene90787:CDS |
| TTGATTAGTCTTACTGGAGA+GGG | 0.527695 | 1.4:-88221625 | MS.gene90787:CDS |
| ATCATCTAAAATGCCCATCA+AGG | 0.531529 | 1.4:+88222669 | None:intergenic |
| GCTACTTTGCAGTATCAGTC+TGG | 0.532281 | 1.4:-88217659 | MS.gene90787:CDS |
| TTGTAGAACCAGATTCTGTA+CGG | 0.533433 | 1.4:+88221662 | None:intergenic |
| GTACTTCAGTGCTTCGAGTG+TGG | 0.533468 | 1.4:-88222136 | MS.gene90787:intron |
| ATTCTAGTCTCCTCGGATGC+CGG | 0.534883 | 1.4:+88223971 | None:intergenic |
| GGGCAGTTAGATGACAATGA+TGG | 0.535831 | 1.4:-88223352 | MS.gene90787:CDS |
| ACTGCTATCAAATGTGGAGC+CGG | 0.536559 | 1.4:+88221885 | None:intergenic |
| TGAAACAGCATTAATGGAGA+TGG | 0.538013 | 1.4:-88219422 | MS.gene90787:CDS |
| TCACCCCATCCAAGTCCAAA+TGG | 0.538801 | 1.4:+88217190 | None:intergenic |
| CTTAAAACATACCGTGGAGA+TGG | 0.540060 | 1.4:+88217620 | None:intergenic |
| TTGGTAACAACAAAGGATGC+TGG | 0.541111 | 1.4:-88221937 | MS.gene90787:CDS |
| TCTAGATTATCTGGGAGTGC+AGG | 0.544285 | 1.4:-88222332 | MS.gene90787:CDS |
| AGAAAGCAAACTTATCCTCC+TGG | 0.545441 | 1.4:+88217216 | None:intergenic |
| ACCTGATGCTAGCTCAGAGA+AGG | 0.548837 | 1.4:-88224059 | MS.gene90787:CDS |
| GTGTCCTTGGAAAGAAGAGT+TGG | 0.552169 | 1.4:-88223624 | MS.gene90787:CDS |
| TGTGTCAACAGGGATGCCTA+TGG | 0.558632 | 1.4:-88224478 | None:intergenic |
| CTGGTAGGGGTATCCATCGT+AGG | 0.559442 | 1.4:+88217235 | None:intergenic |
| ACAAGAGGAGTATCTAGACT+AGG | 0.560908 | 1.4:+88223707 | None:intergenic |
| AGTTATGGCTGAGTCTATGC+TGG | 0.562409 | 1.4:-88217684 | MS.gene90787:CDS |
| AGGTGTGGTAAAAGATGAGC+TGG | 0.563044 | 1.4:-88223834 | MS.gene90787:CDS |
| TCTTCACAGCCAGAATCTCC+CGG | 0.563964 | 1.4:-88217277 | MS.gene90787:CDS |
| GGCAGTTAGATGACAATGAT+GGG | 0.564494 | 1.4:-88223351 | MS.gene90787:CDS |
| AAAGATGAAAGAAATAAGAA+AGG | 0.564961 | 1.4:-88223854 | MS.gene90787:CDS |
| CAGTTCTAAATAGCATGACT+CGG | 0.565813 | 1.4:+88222090 | None:intergenic |
| CACCCTGCTTTGGACGAGGA+TGG | 0.566489 | 1.4:-88223136 | MS.gene90787:CDS |
| TGTGGGTGTCAAAGCAAGGC+GGG | 0.567027 | 1.4:-88223443 | MS.gene90787:CDS |
| AACATGCTTCCTTGGGAAAG+TGG | 0.568071 | 1.4:-88222268 | MS.gene90787:intron |
| AAGAGGAAAGGTCCGAGCGG+TGG | 0.571481 | 1.4:-88224192 | MS.gene90787:CDS |
| TCTATGAATTCTAGTCTCCT+CGG | 0.571616 | 1.4:+88223964 | None:intergenic |
| TCCAATGGCACTGAGGGGAG+AGG | 0.572143 | 1.4:-88223579 | MS.gene90787:intron |
| ATCATCAAAAGGAGCATGTG+AGG | 0.573179 | 1.4:-88223771 | MS.gene90787:CDS |
| TGTAGAACCAGATTCTGTAC+GGG | 0.579242 | 1.4:+88221663 | None:intergenic |
| GCCAATCATCTAGATTATCT+GGG | 0.580459 | 1.4:-88222340 | MS.gene90787:CDS |
| CAGGATCTACTGGCCTCCAA+TGG | 0.580957 | 1.4:-88223406 | MS.gene90787:CDS |
| GCTCGACATAATCCCTCTGT+TGG | 0.584398 | 1.4:-88223079 | MS.gene90787:CDS |
| TTTGATTAGTCTTACTGGAG+AGG | 0.585523 | 1.4:-88221626 | MS.gene90787:CDS |
| CAAACTTATCCTCCTGGTAG+GGG | 0.586096 | 1.4:+88217222 | None:intergenic |
| GGAGGAGTTACCGGCATCCG+AGG | 0.588034 | 1.4:-88223981 | MS.gene90787:CDS |
| TGGATGGGGTGATCGAAACA+AGG | 0.588081 | 1.4:-88217179 | MS.gene90787:intron |
| CTACGATGGATACCCCTACC+AGG | 0.588101 | 1.4:-88217234 | MS.gene90787:CDS |
| TTCAGGAGGAAGAAGAGGAA+AGG | 0.588650 | 1.4:-88224204 | MS.gene90787:intron |
| TACCATCCTCGTCCAAAGCA+GGG | 0.589974 | 1.4:+88223134 | None:intergenic |
| TCTGGGAGTGCAGGTTGCAT+GGG | 0.591256 | 1.4:-88222323 | MS.gene90787:CDS |
| GCTCAGAGAAGGGTGTTGAT+GGG | 0.591623 | 1.4:-88224048 | MS.gene90787:CDS |
| AGCAGCAATACCATTTGTTG+AGG | 0.591699 | 1.4:+88223670 | None:intergenic |
| CAAGAGGAGTATCTAGACTA+GGG | 0.592003 | 1.4:+88223708 | None:intergenic |
| AAAAGGTTACAGAGGATGCT+CGG | 0.593286 | 1.4:-88218439 | MS.gene90787:CDS |
| CAATACAGAAGACTCTGTCT+CGG | 0.596388 | 1.4:+88224147 | None:intergenic |
| GACACAAACAGAACACCTGT+GGG | 0.596559 | 1.4:-88224124 | MS.gene90787:CDS |
| GTTTCTGGTGCTGAATCTGT+AGG | 0.597964 | 1.4:-88224088 | MS.gene90787:CDS |
| ATGTCTTGTAGGTCCAGCCT+TGG | 0.598613 | 1.4:-88221956 | MS.gene90787:intron |
| ATAGGGGAAACCTACTAATG+TGG | 0.602696 | 1.4:-88217063 | MS.gene90787:intron |
| GGTTAAGCAGGACAACAGGC+GGG | 0.603079 | 1.4:-88219401 | MS.gene90787:CDS |
| ATTTCTGATAGGTCTTGATG+CGG | 0.605171 | 1.4:-88218475 | MS.gene90787:intron |
| GCAAGAACAAAAGGTTACAG+AGG | 0.606679 | 1.4:-88218447 | MS.gene90787:CDS |
| CACAAACAGAACACCTGTGG+GGG | 0.609799 | 1.4:-88224122 | MS.gene90787:CDS |
| GGTAGAGCGACTAGAAGAAG+AGG | 0.611682 | 1.4:-88218629 | MS.gene90787:CDS |
| AAGCTGACTGCTATCAAATG+TGG | 0.615286 | 1.4:+88221879 | None:intergenic |
| AAAGGTAACCTGAAGCACTT+GGG | 0.617219 | 1.4:+88218376 | None:intergenic |
| TGGTTAAGCAGGACAACAGG+CGG | 0.617927 | 1.4:-88219402 | MS.gene90787:CDS |
| AAGCCCTGTAAGTCAACATG+AGG | 0.619652 | 1.4:-88217021 | MS.gene90787:CDS |
| AGGTCGCACAGTAAATCCAT+AGG | 0.619964 | 1.4:+88224462 | None:intergenic |
| AGGAGCTGAGGAATAAACAT+AGG | 0.621180 | 1.4:-88221807 | MS.gene90787:CDS |
| CAAGGACACGAAGCCTCTAG+TGG | 0.621659 | 1.4:+88223638 | None:intergenic |
| AGCAAACTTATCCTCCTGGT+AGG | 0.622299 | 1.4:+88217220 | None:intergenic |
| TTGGAAGTTCTTGTTCGTGG+GGG | 0.625449 | 1.4:-88223605 | MS.gene90787:CDS |
| TTGCATGGGTGACTGGACCA+TGG | 0.630069 | 1.4:-88222309 | MS.gene90787:CDS |
| GTTGGAAGTTCTTGTTCGTG+GGG | 0.634337 | 1.4:-88223606 | MS.gene90787:CDS |
| GAGTCACTATCTCTTGCTGA+TGG | 0.635928 | 1.4:-88223800 | MS.gene90787:CDS |
| TGAAAGAAATAAGAAAGGTG+TGG | 0.636747 | 1.4:-88223849 | MS.gene90787:CDS |
| AAGTTCGATTGCAGGAGCTG+AGG | 0.637148 | 1.4:-88221819 | MS.gene90787:CDS |
| TCCAGCCTTGGTAACAACAA+AGG | 0.637738 | 1.4:-88221944 | MS.gene90787:CDS |
| GGGGAGTTCCAATGGCACTG+AGG | 0.638061 | 1.4:-88223586 | MS.gene90787:CDS |
| AGGAGTTCTATGATGTTGAG+AGG | 0.638153 | 1.4:-88223736 | MS.gene90787:CDS |
| ATGGAAAGGACAGATTGAGA+AGG | 0.639006 | 1.4:-88223293 | MS.gene90787:intron |
| TTTCTGATAGGTCTTGATGC+GGG | 0.639713 | 1.4:-88218474 | MS.gene90787:intron |
| GGACACAAACAGAACACCTG+TGG | 0.641708 | 1.4:-88224125 | MS.gene90787:CDS |
| AAAGCTTTGAGGGATGCTAA+GGG | 0.642149 | 1.4:-88221742 | MS.gene90787:CDS |
| ACCTGACAGTAACCAACAGA+GGG | 0.642883 | 1.4:+88223067 | None:intergenic |
| CAATTGAAGAAAGATCAAAA+GGG | 0.650314 | 1.4:-88221768 | MS.gene90787:CDS |
| TGAAAATGGTAGTCAAAAGG+AGG | 0.652128 | 1.4:-88223999 | MS.gene90787:CDS |
| GTACTCAAGCCATCAACAAG+AGG | 0.653340 | 1.4:+88223692 | None:intergenic |
| AAACAATCAAGAGCCTACGA+TGG | 0.655319 | 1.4:-88217248 | MS.gene90787:CDS |
| CTAAACTGCAACCATCTCCA+CGG | 0.655642 | 1.4:-88217631 | MS.gene90787:intron |
| TTCGTGTTAATAAGAAAACT+GGG | 0.656298 | 1.4:-88223883 | MS.gene90787:CDS |
| CAGGCGGGAACTGAGCGCCA+AGG | 0.658763 | 1.4:-88219386 | MS.gene90787:intron |
| CCTGATGCTAGCTCAGAGAA+GGG | 0.661370 | 1.4:-88224058 | MS.gene90787:CDS |
| GGGTGACCAGGAAATGTCCG+CGG | 0.668654 | 1.4:+88223154 | None:intergenic |
| AAAACCTGACCACTTTCCCA+AGG | 0.674975 | 1.4:+88222259 | None:intergenic |
| TTGTGGGTGTCAAAGCAAGG+CGG | 0.684016 | 1.4:-88223444 | MS.gene90787:CDS |
| GGAGTTCCAATGGCACTGAG+GGG | 0.686267 | 1.4:-88223584 | MS.gene90787:CDS |
| GACCTGACAGTAACCAACAG+AGG | 0.688150 | 1.4:+88223066 | None:intergenic |
| AGCCCTGTAAGTCAACATGA+GGG | 0.698307 | 1.4:-88217020 | MS.gene90787:CDS |
| ATGTGAGGAAGATTCTGACG+AGG | 0.698919 | 1.4:-88223756 | MS.gene90787:CDS |
| TGTTTGTGCAGGATCTGCCG+CGG | 0.713471 | 1.4:-88223171 | MS.gene90787:intron |
| AAGAAGAGGAAAGGTCCGAG+CGG | 0.722767 | 1.4:-88224195 | MS.gene90787:CDS |
| ACACAAACAGAACACCTGTG+GGG | 0.727670 | 1.4:-88224123 | MS.gene90787:CDS |
| CGATGGATACCCCTACCAGG+AGG | 0.749834 | 1.4:-88217231 | MS.gene90787:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 88216980 | 88224487 | 88216980 | ID=MS.gene90787 |
| chr1.4 | mRNA | 88216980 | 88224487 | 88216980 | ID=MS.gene90787.t1;Parent=MS.gene90787 |
| chr1.4 | exon | 88224443 | 88224487 | 88224443 | ID=MS.gene90787.t1.exon1;Parent=MS.gene90787.t1 |
| chr1.4 | CDS | 88224443 | 88224487 | 88224443 | ID=cds.MS.gene90787.t1;Parent=MS.gene90787.t1 |
| chr1.4 | exon | 88223580 | 88224221 | 88223580 | ID=MS.gene90787.t1.exon2;Parent=MS.gene90787.t1 |
| chr1.4 | CDS | 88223580 | 88224221 | 88223580 | ID=cds.MS.gene90787.t1;Parent=MS.gene90787.t1 |
| chr1.4 | exon | 88223294 | 88223479 | 88223294 | ID=MS.gene90787.t1.exon3;Parent=MS.gene90787.t1 |
| chr1.4 | CDS | 88223294 | 88223479 | 88223294 | ID=cds.MS.gene90787.t1;Parent=MS.gene90787.t1 |
| chr1.4 | exon | 88223069 | 88223182 | 88223069 | ID=MS.gene90787.t1.exon4;Parent=MS.gene90787.t1 |
| chr1.4 | CDS | 88223069 | 88223182 | 88223069 | ID=cds.MS.gene90787.t1;Parent=MS.gene90787.t1 |
| chr1.4 | exon | 88222901 | 88222959 | 88222901 | ID=MS.gene90787.t1.exon5;Parent=MS.gene90787.t1 |
| chr1.4 | CDS | 88222901 | 88222959 | 88222901 | ID=cds.MS.gene90787.t1;Parent=MS.gene90787.t1 |
| chr1.4 | exon | 88222627 | 88222693 | 88222627 | ID=MS.gene90787.t1.exon6;Parent=MS.gene90787.t1 |
| chr1.4 | CDS | 88222627 | 88222693 | 88222627 | ID=cds.MS.gene90787.t1;Parent=MS.gene90787.t1 |
| chr1.4 | exon | 88222471 | 88222522 | 88222471 | ID=MS.gene90787.t1.exon7;Parent=MS.gene90787.t1 |
| chr1.4 | CDS | 88222471 | 88222522 | 88222471 | ID=cds.MS.gene90787.t1;Parent=MS.gene90787.t1 |
| chr1.4 | exon | 88222269 | 88222361 | 88222269 | ID=MS.gene90787.t1.exon8;Parent=MS.gene90787.t1 |
| chr1.4 | CDS | 88222269 | 88222361 | 88222269 | ID=cds.MS.gene90787.t1;Parent=MS.gene90787.t1 |
| chr1.4 | exon | 88222066 | 88222149 | 88222066 | ID=MS.gene90787.t1.exon9;Parent=MS.gene90787.t1 |
| chr1.4 | CDS | 88222066 | 88222149 | 88222066 | ID=cds.MS.gene90787.t1;Parent=MS.gene90787.t1 |
| chr1.4 | exon | 88221591 | 88221967 | 88221591 | ID=MS.gene90787.t1.exon10;Parent=MS.gene90787.t1 |
| chr1.4 | CDS | 88221591 | 88221967 | 88221591 | ID=cds.MS.gene90787.t1;Parent=MS.gene90787.t1 |
| chr1.4 | exon | 88220246 | 88220307 | 88220246 | ID=MS.gene90787.t1.exon11;Parent=MS.gene90787.t1 |
| chr1.4 | CDS | 88220246 | 88220307 | 88220246 | ID=cds.MS.gene90787.t1;Parent=MS.gene90787.t1 |
| chr1.4 | exon | 88219387 | 88219456 | 88219387 | ID=MS.gene90787.t1.exon12;Parent=MS.gene90787.t1 |
| chr1.4 | CDS | 88219387 | 88219456 | 88219387 | ID=cds.MS.gene90787.t1;Parent=MS.gene90787.t1 |
| chr1.4 | exon | 88218570 | 88218650 | 88218570 | ID=MS.gene90787.t1.exon13;Parent=MS.gene90787.t1 |
| chr1.4 | CDS | 88218570 | 88218650 | 88218570 | ID=cds.MS.gene90787.t1;Parent=MS.gene90787.t1 |
| chr1.4 | exon | 88218385 | 88218486 | 88218385 | ID=MS.gene90787.t1.exon14;Parent=MS.gene90787.t1 |
| chr1.4 | CDS | 88218385 | 88218486 | 88218385 | ID=cds.MS.gene90787.t1;Parent=MS.gene90787.t1 |
| chr1.4 | exon | 88217632 | 88217756 | 88217632 | ID=MS.gene90787.t1.exon15;Parent=MS.gene90787.t1 |
| chr1.4 | CDS | 88217632 | 88217756 | 88217632 | ID=cds.MS.gene90787.t1;Parent=MS.gene90787.t1 |
| chr1.4 | exon | 88217180 | 88217300 | 88217180 | ID=MS.gene90787.t1.exon16;Parent=MS.gene90787.t1 |
| chr1.4 | CDS | 88217180 | 88217300 | 88217180 | ID=cds.MS.gene90787.t1;Parent=MS.gene90787.t1 |
| chr1.4 | exon | 88216980 | 88217081 | 88216980 | ID=MS.gene90787.t1.exon17;Parent=MS.gene90787.t1 |
| chr1.4 | CDS | 88216980 | 88217081 | 88216980 | ID=cds.MS.gene90787.t1;Parent=MS.gene90787.t1 |
| Gene Sequence |
| Protein sequence |
