Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74226.t1 | XP_003592812.2 | 95.3 | 807 | 23 | 3 | 16 | 817 | 21 | 817 | 0.00E+00 | 1417.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74226.t1 | C8VDQ4 | 32.5 | 317 | 167 | 5 | 241 | 537 | 287 | 576 | 9.0e-36 | 153.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74226.t1 | G7IAX7 | 95.3 | 807 | 23 | 3 | 16 | 817 | 21 | 817 | 0.0e+00 | 1417.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene74226 | 0.802964 | 4.37E-49 | -1.69E-46 |
| MS.gene049190 | MS.gene74226 | 0.80457 | 2.03E-49 | -1.69E-46 |
| MS.gene049341 | MS.gene74226 | 0.815757 | 7.85E-52 | -1.69E-46 |
| MS.gene049382 | MS.gene74226 | 0.830844 | 2.34E-55 | -1.69E-46 |
| MS.gene049404 | MS.gene74226 | 0.809372 | 1.95E-50 | -1.69E-46 |
| MS.gene049501 | MS.gene74226 | 0.812207 | 4.76E-51 | -1.69E-46 |
| MS.gene049887 | MS.gene74226 | 0.82908 | 6.29E-55 | -1.69E-46 |
| MS.gene049979 | MS.gene74226 | 0.824908 | 6.25E-54 | -1.69E-46 |
| MS.gene050020 | MS.gene74226 | 0.822071 | 2.88E-53 | -1.69E-46 |
| MS.gene05016 | MS.gene74226 | 0.815087 | 1.11E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene74226 | 0.801441 | 8.99E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene74226 | 0.805888 | 1.07E-49 | -1.69E-46 |
| MS.gene050586 | MS.gene74226 | 0.821891 | 3.17E-53 | -1.69E-46 |
| MS.gene050689 | MS.gene74226 | 0.804002 | 2.66E-49 | -1.69E-46 |
| MS.gene050719 | MS.gene74226 | 0.816265 | 6.04E-52 | -1.69E-46 |
| MS.gene050721 | MS.gene74226 | 0.818754 | 1.66E-52 | -1.69E-46 |
| MS.gene050780 | MS.gene74226 | 0.805608 | 1.23E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene74226 | 0.869631 | 2.68E-66 | -1.69E-46 |
| MS.gene050808 | MS.gene74226 | 0.812972 | 3.24E-51 | -1.69E-46 |
| MS.gene050815 | MS.gene74226 | 0.811039 | 8.55E-51 | -1.69E-46 |
| MS.gene051102 | MS.gene74226 | 0.84468 | 6.51E-59 | -1.69E-46 |
| MS.gene051180 | MS.gene74226 | 0.810555 | 1.09E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene74226 | 0.808947 | 2.41E-50 | -1.69E-46 |
| MS.gene051577 | MS.gene74226 | 0.803517 | 3.36E-49 | -1.69E-46 |
| MS.gene05157 | MS.gene74226 | 0.804491 | 2.11E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene74226 | 0.813928 | 2.00E-51 | -1.69E-46 |
| MS.gene051789 | MS.gene74226 | 0.81922 | 1.30E-52 | -1.69E-46 |
| MS.gene052020 | MS.gene74226 | 0.814609 | 1.41E-51 | -1.69E-46 |
| MS.gene052133 | MS.gene74226 | 0.820805 | 5.65E-53 | -1.69E-46 |
| MS.gene052302 | MS.gene74226 | 0.813634 | 2.32E-51 | -1.69E-46 |
| MS.gene052323 | MS.gene74226 | 0.824811 | 6.59E-54 | -1.69E-46 |
| MS.gene052376 | MS.gene74226 | 0.805958 | 1.04E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene74226 | 0.818941 | 1.51E-52 | -1.69E-46 |
| MS.gene052611 | MS.gene74226 | 0.826064 | 3.33E-54 | -1.69E-46 |
| MS.gene052665 | MS.gene74226 | 0.870697 | 1.20E-66 | -1.69E-46 |
| MS.gene052732 | MS.gene74226 | 0.811204 | 7.87E-51 | -1.69E-46 |
| MS.gene052856 | MS.gene74226 | 0.803508 | 3.37E-49 | -1.69E-46 |
| MS.gene052858 | MS.gene74226 | 0.81348 | 2.51E-51 | -1.69E-46 |
| MS.gene052860 | MS.gene74226 | 0.809421 | 1.91E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene74226 | 0.81692 | 4.31E-52 | -1.69E-46 |
| MS.gene053144 | MS.gene74226 | 0.823696 | 1.21E-53 | -1.69E-46 |
| MS.gene053174 | MS.gene74226 | 0.821122 | 4.77E-53 | -1.69E-46 |
| MS.gene053437 | MS.gene74226 | 0.806499 | 7.99E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene74226 | 0.826843 | 2.17E-54 | -1.69E-46 |
| MS.gene053599 | MS.gene74226 | 0.809439 | 1.89E-50 | -1.69E-46 |
| MS.gene053630 | MS.gene74226 | 0.807007 | 6.24E-50 | -1.69E-46 |
| MS.gene054472 | MS.gene74226 | 0.823563 | 1.30E-53 | -1.69E-46 |
| MS.gene054550 | MS.gene74226 | 0.818913 | 1.53E-52 | -1.69E-46 |
| MS.gene054584 | MS.gene74226 | 0.816355 | 5.77E-52 | -1.69E-46 |
| MS.gene05462 | MS.gene74226 | 0.833911 | 4.06E-56 | -1.69E-46 |
| MS.gene055363 | MS.gene74226 | 0.813321 | 2.72E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene74226 | 0.819746 | 9.88E-53 | -1.69E-46 |
| MS.gene055466 | MS.gene74226 | 0.83443 | 3.01E-56 | -1.69E-46 |
| MS.gene055468 | MS.gene74226 | 0.83072 | 2.51E-55 | -1.69E-46 |
| MS.gene055469 | MS.gene74226 | 0.829665 | 4.53E-55 | -1.69E-46 |
| MS.gene055512 | MS.gene74226 | 0.839957 | 1.16E-57 | -1.69E-46 |
| MS.gene055580 | MS.gene74226 | -0.811873 | 5.63E-51 | -1.69E-46 |
| MS.gene055890 | MS.gene74226 | 0.815309 | 9.88E-52 | -1.69E-46 |
| MS.gene055891 | MS.gene74226 | 0.828111 | 1.08E-54 | -1.69E-46 |
| MS.gene056043 | MS.gene74226 | -0.810672 | 1.03E-50 | -1.69E-46 |
| MS.gene056069 | MS.gene74226 | -0.842706 | 2.19E-58 | -1.69E-46 |
| MS.gene056308 | MS.gene74226 | 0.801726 | 7.86E-49 | -1.69E-46 |
| MS.gene056432 | MS.gene74226 | 0.817149 | 3.83E-52 | -1.69E-46 |
| MS.gene056553 | MS.gene74226 | 0.830943 | 2.21E-55 | -1.69E-46 |
| MS.gene056584 | MS.gene74226 | 0.838079 | 3.56E-57 | -1.69E-46 |
| MS.gene056589 | MS.gene74226 | 0.827801 | 1.28E-54 | -1.69E-46 |
| MS.gene056643 | MS.gene74226 | 0.81688 | 4.40E-52 | -1.69E-46 |
| MS.gene056760 | MS.gene74226 | 0.839021 | 2.03E-57 | -1.69E-46 |
| MS.gene057057 | MS.gene74226 | 0.840133 | 1.04E-57 | -1.69E-46 |
| MS.gene057060 | MS.gene74226 | 0.811402 | 7.13E-51 | -1.69E-46 |
| MS.gene057140 | MS.gene74226 | 0.801876 | 7.32E-49 | -1.69E-46 |
| MS.gene057234 | MS.gene74226 | 0.80602 | 1.01E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene74226 | 0.813855 | 2.07E-51 | -1.69E-46 |
| MS.gene058055 | MS.gene74226 | 0.816472 | 5.43E-52 | -1.69E-46 |
| MS.gene058182 | MS.gene74226 | 0.808439 | 3.10E-50 | -1.69E-46 |
| MS.gene058636 | MS.gene74226 | 0.817821 | 2.70E-52 | -1.69E-46 |
| MS.gene058798 | MS.gene74226 | 0.808158 | 3.55E-50 | -1.69E-46 |
| MS.gene058851 | MS.gene74226 | 0.808347 | 3.24E-50 | -1.69E-46 |
| MS.gene058852 | MS.gene74226 | 0.805318 | 1.41E-49 | -1.69E-46 |
| MS.gene058906 | MS.gene74226 | 0.861301 | 1.13E-63 | -1.69E-46 |
| MS.gene059171 | MS.gene74226 | 0.805037 | 1.62E-49 | -1.69E-46 |
| MS.gene059713 | MS.gene74226 | 0.832261 | 1.05E-55 | -1.69E-46 |
| MS.gene05978 | MS.gene74226 | 0.815583 | 8.58E-52 | -1.69E-46 |
| MS.gene059937 | MS.gene74226 | 0.819477 | 1.14E-52 | -1.69E-46 |
| MS.gene06001 | MS.gene74226 | 0.814866 | 1.24E-51 | -1.69E-46 |
| MS.gene060194 | MS.gene74226 | 0.825957 | 3.53E-54 | -1.69E-46 |
| MS.gene060587 | MS.gene74226 | 0.843684 | 1.20E-58 | -1.69E-46 |
| MS.gene060619 | MS.gene74226 | 0.832365 | 9.85E-56 | -1.69E-46 |
| MS.gene060637 | MS.gene74226 | 0.828918 | 6.88E-55 | -1.69E-46 |
| MS.gene060918 | MS.gene74226 | 0.80986 | 1.54E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene74226 | MS.gene073802 | PPI |
| MS.gene30888 | MS.gene74226 | PPI |
| MS.gene74226 | MS.gene029887 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74226.t1 | MTR_1g116310 | 95.415 | 807 | 22 | 3 | 16 | 817 | 21 | 817 | 0.0 | 1561 |
| MS.gene74226.t1 | MTR_1g067150 | 58.832 | 719 | 228 | 15 | 97 | 799 | 483 | 1149 | 0.0 | 772 |
| MS.gene74226.t1 | MTR_1g067150 | 61.538 | 52 | 17 | 1 | 14 | 62 | 323 | 374 | 9.06e-13 | 72.8 |
| MS.gene74226.t1 | MTR_5g098140 | 33.974 | 312 | 174 | 7 | 238 | 543 | 106 | 391 | 1.72e-49 | 179 |
| MS.gene74226.t1 | MTR_6g016590 | 29.310 | 290 | 167 | 6 | 242 | 524 | 84 | 342 | 1.91e-27 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74226.t1 | AT3G55020 | 65.091 | 825 | 239 | 13 | 9 | 812 | 21 | 817 | 0.0 | 990 |
| MS.gene74226.t1 | AT3G55020 | 68.043 | 751 | 207 | 11 | 9 | 745 | 21 | 752 | 0.0 | 956 |
| MS.gene74226.t1 | AT2G39280 | 63.733 | 750 | 240 | 11 | 16 | 751 | 13 | 744 | 0.0 | 886 |
| MS.gene74226.t1 | AT3G55020 | 66.808 | 708 | 202 | 11 | 9 | 702 | 21 | 709 | 0.0 | 882 |
| MS.gene74226.t1 | AT2G39280 | 63.333 | 750 | 238 | 12 | 16 | 751 | 41 | 767 | 0.0 | 872 |
| MS.gene74226.t1 | AT2G37290 | 59.038 | 686 | 214 | 13 | 117 | 788 | 209 | 841 | 0.0 | 761 |
| MS.gene74226.t1 | AT2G37290 | 35.762 | 151 | 79 | 6 | 16 | 161 | 16 | 153 | 5.05e-15 | 80.1 |
| MS.gene74226.t1 | AT2G37290 | 58.892 | 686 | 215 | 13 | 117 | 788 | 209 | 841 | 0.0 | 760 |
| MS.gene74226.t1 | AT2G37290 | 35.000 | 160 | 86 | 6 | 7 | 161 | 7 | 153 | 4.18e-15 | 80.1 |
| MS.gene74226.t1 | AT2G37290 | 56.111 | 720 | 215 | 14 | 117 | 788 | 209 | 875 | 0.0 | 742 |
| MS.gene74226.t1 | AT2G37290 | 35.000 | 160 | 86 | 6 | 7 | 161 | 7 | 153 | 4.46e-15 | 80.1 |
| MS.gene74226.t1 | AT3G07890 | 34.320 | 338 | 175 | 8 | 214 | 545 | 100 | 396 | 4.06e-52 | 187 |
| MS.gene74226.t1 | AT3G07890 | 34.320 | 338 | 175 | 8 | 214 | 545 | 100 | 396 | 4.06e-52 | 187 |
| MS.gene74226.t1 | AT3G07890 | 34.320 | 338 | 175 | 8 | 214 | 545 | 100 | 396 | 4.06e-52 | 187 |
| MS.gene74226.t1 | AT3G07890 | 34.320 | 338 | 175 | 8 | 214 | 545 | 100 | 396 | 4.06e-52 | 187 |
| MS.gene74226.t1 | AT3G07890 | 34.320 | 338 | 175 | 8 | 214 | 545 | 100 | 396 | 4.06e-52 | 187 |
| MS.gene74226.t1 | AT5G15930 | 32.340 | 235 | 125 | 5 | 242 | 469 | 82 | 289 | 6.26e-29 | 119 |
| MS.gene74226.t1 | AT3G02460 | 30.453 | 243 | 135 | 5 | 242 | 477 | 85 | 300 | 1.54e-25 | 108 |
| MS.gene74226.t1 | AT3G02460 | 30.638 | 235 | 129 | 5 | 242 | 469 | 85 | 292 | 1.95e-25 | 109 |
| MS.gene74226.t1 | AT3G02460 | 30.638 | 235 | 129 | 5 | 242 | 469 | 85 | 292 | 6.44e-25 | 107 |
| MS.gene74226.t1 | AT3G02460 | 30.909 | 220 | 119 | 4 | 242 | 454 | 85 | 278 | 4.28e-23 | 100 |
| MS.gene74226.t1 | AT3G02460 | 30.909 | 220 | 119 | 4 | 242 | 454 | 85 | 278 | 6.98e-23 | 101 |
Find 202 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGGTATACAAACCCAATT+TGG | 0.132514 | 1.2:+86345904 | None:intergenic |
| TAGAACTGCAGTTGCTTTAA+TGG | 0.133261 | 1.2:-86345523 | MS.gene74226:CDS |
| ATCGAACTTCAGTTATATTT+TGG | 0.158028 | 1.2:+86345281 | None:intergenic |
| ATTAAAAGTAATCATCAAAA+TGG | 0.209920 | 1.2:-86346820 | MS.gene74226:CDS |
| TTTCCCTCATGTTGACTTAC+AGG | 0.231638 | 1.2:+86340439 | None:intergenic |
| AGCCAATCATCTAGATTATC+TGG | 0.233143 | 1.2:-86345788 | MS.gene74226:CDS |
| CTGGCCTCCAATGGTGATTC+TGG | 0.238333 | 1.2:-86346844 | MS.gene74226:CDS |
| GAATATACTATGGGTGAAAA+TGG | 0.247931 | 1.2:-86348654 | None:intergenic |
| GCGGGAGAGGTTTCCCAAAT+TGG | 0.277262 | 1.2:-86345918 | MS.gene74226:CDS |
| TTTCTAGATCCGGGAGATTC+TGG | 0.277675 | 1.2:+86340686 | None:intergenic |
| ATCTTATGGTTGACCATAAC+TGG | 0.286814 | 1.2:+86347386 | None:intergenic |
| GGGGAAGAGAACAAAGTTTC+TGG | 0.290787 | 1.2:-86347550 | MS.gene74226:CDS |
| GGAGCTTGAAACAGCATTAA+TGG | 0.291836 | 1.2:-86342842 | MS.gene74226:CDS |
| ATTCGTGTTAAGAAGAAAAC+TGG | 0.300454 | 1.2:-86347331 | MS.gene74226:CDS |
| GATCTGCCGCGGACATTTCC+TGG | 0.303734 | 1.2:-86346607 | MS.gene74226:CDS |
| CTAGATACTCCTCTTGTTGA+TGG | 0.308816 | 1.2:-86347148 | MS.gene74226:CDS |
| CTCTTGATTGTTTCTAGATC+CGG | 0.309833 | 1.2:+86340676 | None:intergenic |
| ATATGCTTCCCAAGTGCTTC+AGG | 0.328257 | 1.2:-86341798 | MS.gene74226:intron |
| ACAGGAAACTGCAATGCTTC+AGG | 0.337217 | 1.2:-86341983 | MS.gene74226:intron |
| CTTTCTCGACCATTTGGACT+TGG | 0.337275 | 1.2:-86340617 | MS.gene74226:CDS |
| CGGGAGAGGTTTCCCAAATT+GGG | 0.339474 | 1.2:-86345917 | MS.gene74226:intron |
| CTCGACCATTTGGACTTGGA+TGG | 0.351641 | 1.2:-86340613 | MS.gene74226:CDS |
| GCTGGTTCTTCCACATTAGT+AGG | 0.355189 | 1.2:+86340475 | None:intergenic |
| TCCTTTGTTGTTACCAAGGC+TGG | 0.355345 | 1.2:+86345391 | None:intergenic |
| GTGCAGGTTGCATGGGTGAC+TGG | 0.357360 | 1.2:-86345763 | MS.gene74226:CDS |
| ATTTCCTGGTCACCCTGCTT+TGG | 0.358219 | 1.2:-86346593 | MS.gene74226:CDS |
| TCGAATAATGCGCAAGTGCT+TGG | 0.359101 | 1.2:-86345142 | MS.gene74226:CDS |
| GCTGATACTCCACCTGAAAA+TGG | 0.359223 | 1.2:-86347460 | MS.gene74226:CDS |
| AGTATTAAGAGATGATCTTA+TGG | 0.361165 | 1.2:+86347372 | None:intergenic |
| CACTAGAGGCTTCGTGTCCT+TGG | 0.372322 | 1.2:-86347084 | MS.gene74226:CDS |
| GTTGCTTTAATGGAGCTATA+TGG | 0.372455 | 1.2:-86345513 | MS.gene74226:intron |
| TATAACTGAAGTTCGATTGC+AGG | 0.383165 | 1.2:-86345275 | MS.gene74226:CDS |
| AACTGTTGCACTTGCAGAAA+TGG | 0.384197 | 1.2:-86341135 | MS.gene74226:CDS |
| AATTTATCCCGTACAGCATC+TGG | 0.397721 | 1.2:-86345118 | MS.gene74226:CDS |
| AGTTTGCTTTCTCGACCATT+TGG | 0.398525 | 1.2:-86340623 | MS.gene74226:CDS |
| GGGATGGTTGCAGTTTAGTT+TGG | 0.399017 | 1.2:+86341054 | None:intergenic |
| AGCTCAGAGAAGGGTGTTGA+TGG | 0.400403 | 1.2:-86347496 | MS.gene74226:CDS |
| CGAATAATGCGCAAGTGCTT+GGG | 0.402971 | 1.2:-86345141 | MS.gene74226:CDS |
| CAAAAGGGCTTAAAGCTTTG+AGG | 0.410424 | 1.2:-86345201 | MS.gene74226:CDS |
| ACCTCTCCCCTCAGTGCCAT+TGG | 0.417402 | 1.2:+86347025 | None:intergenic |
| TTAACCTGCTCTGGAAGATC+TGG | 0.418284 | 1.2:+86345034 | None:intergenic |
| CGTACTCGCGGTATCTTTGC+AGG | 0.426559 | 1.2:+86347874 | None:intergenic |
| AATGGAGAAGAGAGCAGTTA+TGG | 0.428862 | 1.2:-86341117 | MS.gene74226:CDS |
| GCAATTGAAGAAAGATCAAA+AGG | 0.430398 | 1.2:-86345217 | MS.gene74226:CDS |
| TAGTCATAAGGAGGAGTTAC+CGG | 0.432004 | 1.2:-86347437 | MS.gene74226:CDS |
| TTGAAGAGTTGGTGCGGGAG+AGG | 0.436427 | 1.2:-86345931 | MS.gene74226:CDS |
| TCGACCATTTGGACTTGGAT+GGG | 0.439304 | 1.2:-86340612 | MS.gene74226:CDS |
| AAGACGGAATTAACCTGCTC+TGG | 0.441432 | 1.2:+86345025 | None:intergenic |
| CGACCATTTGGACTTGGATG+GGG | 0.448956 | 1.2:-86340611 | MS.gene74226:CDS |
| TCGGTATACAAACCCAATTT+GGG | 0.454846 | 1.2:+86345905 | None:intergenic |
| GCGGGTAGAGAAGTATTATC+AGG | 0.455990 | 1.2:-86346872 | MS.gene74226:CDS |
| ACTTTCTGATAAACAAGAAC+AGG | 0.458805 | 1.2:-86342001 | MS.gene74226:CDS |
| TGCTGCTGCTGCACCACTAG+AGG | 0.462754 | 1.2:-86347098 | MS.gene74226:CDS |
| ATCTGGGAGTGCAGGTTGCA+TGG | 0.464025 | 1.2:-86345771 | MS.gene74226:CDS |
| AGAGGATATGATAGAGTCTC+AGG | 0.467308 | 1.2:-86346073 | MS.gene74226:intron |
| GAGTTGGAAGTTCTTGTTCG+TGG | 0.469569 | 1.2:-86347055 | MS.gene74226:CDS |
| TCAATTGCAGCTATTACAGC+TGG | 0.470313 | 1.2:+86345232 | None:intergenic |
| CTACCATCCTCGTCCAAAGC+AGG | 0.473442 | 1.2:+86346580 | None:intergenic |
| TCCCTCTGTTGGTTACTGTC+AGG | 0.474299 | 1.2:-86346515 | MS.gene74226:intron |
| GAAGTATTATCAGGATCTAC+TGG | 0.474674 | 1.2:-86346863 | MS.gene74226:CDS |
| AGCTCCAGATCTTCCAGAGC+AGG | 0.477837 | 1.2:-86345038 | MS.gene74226:intron |
| TCCCAGATAATCTAGATGAT+TGG | 0.479830 | 1.2:+86345786 | None:intergenic |
| AAAAGGGCTTAAAGCTTTGA+GGG | 0.481358 | 1.2:-86345200 | MS.gene74226:CDS |
| ACCTGAAAATGGTAGTCATA+AGG | 0.481408 | 1.2:-86347449 | MS.gene74226:CDS |
| TACTATGGGTGAAAATGGAT+GGG | 0.484643 | 1.2:-86348649 | None:intergenic |
| TCTTGATTGTTTCTAGATCC+GGG | 0.486136 | 1.2:+86340677 | None:intergenic |
| TGCCTGAGGAAAATGCCTTT+TGG | 0.488127 | 1.2:-86346347 | MS.gene74226:intron |
| TTAAAAGTAATCATCAAAAT+GGG | 0.489455 | 1.2:-86346819 | MS.gene74226:CDS |
| GTAAGTCAACATGAGGGAAA+TGG | 0.490157 | 1.2:-86340436 | MS.gene74226:CDS |
| TGGTCACCCTGCTTTGGACG+AGG | 0.490278 | 1.2:-86346587 | MS.gene74226:CDS |
| TACTTCAGTGCTTCGAGTGT+GGG | 0.492239 | 1.2:-86345583 | MS.gene74226:intron |
| TTCCCTCATGTTGACTTACA+GGG | 0.493592 | 1.2:+86340440 | None:intergenic |
| AATTCCAGAATCACCATTGG+AGG | 0.496500 | 1.2:+86346840 | None:intergenic |
| AGTTGGAAGTTCTTGTTCGT+GGG | 0.497626 | 1.2:-86347054 | MS.gene74226:CDS |
| ACAGGGCTTTCTACTACAGC+TGG | 0.498797 | 1.2:+86340457 | None:intergenic |
| CGAGACAGAGTCTTCTGTAT+TGG | 0.501438 | 1.2:-86347593 | MS.gene74226:CDS |
| TTTGAGGGATGCTAAGGGTC+TGG | 0.503136 | 1.2:-86345185 | MS.gene74226:CDS |
| CCCTTCTCTGAGCTAGCATC+AGG | 0.503203 | 1.2:+86347505 | None:intergenic |
| AGAAAAGATCAGCTATTCTC+AGG | 0.504550 | 1.2:-86343658 | MS.gene74226:intron |
| AGCATCCTTTGTTGTTACCA+AGG | 0.504710 | 1.2:+86345387 | None:intergenic |
| GGGAGTTCCAATGGCACTGA+GGG | 0.506042 | 1.2:-86347032 | MS.gene74226:CDS |
| GGCTTGAGTACCTCAACAAA+TGG | 0.507338 | 1.2:-86347127 | MS.gene74226:CDS |
| GCGGGTAGAGCAAGAACAAA+AGG | 0.510673 | 1.2:-86341870 | MS.gene74226:CDS |
| TAAAGCTTTGAGGGATGCTA+AGG | 0.510952 | 1.2:-86345191 | MS.gene74226:CDS |
| TTTAATTCCAGAATCACCAT+TGG | 0.511424 | 1.2:+86346837 | None:intergenic |
| TAAGTTGACTGTGGAGGAAG+TGG | 0.511842 | 1.2:-86348625 | MS.gene74226:CDS |
| ATACTATGGGTGAAAATGGA+TGG | 0.512806 | 1.2:-86348650 | None:intergenic |
| GATGGTGCAAAATCATCAAA+AGG | 0.513893 | 1.2:-86347229 | MS.gene74226:CDS |
| ACTTTACTTCAGTCATTAGC+CGG | 0.514238 | 1.2:-86345352 | MS.gene74226:CDS |
| AGATGGTTAAGCAGGACAAC+AGG | 0.514494 | 1.2:-86342819 | MS.gene74226:CDS |
| CTCACTTTATGCAGATTGCA+TGG | 0.515543 | 1.2:-86343712 | MS.gene74226:intron |
| AAAAGGTAACCTGAAGCACT+TGG | 0.516055 | 1.2:+86341789 | None:intergenic |
| CGTTAAAGTACAAGATGAGT+TGG | 0.517468 | 1.2:-86340413 | MS.gene74226:CDS |
| GGGCAGTTAGATGACAATGA+TGG | 0.519005 | 1.2:-86346799 | MS.gene74226:CDS |
| ACTTCCAACTCTTCTTTCCA+AGG | 0.520731 | 1.2:+86347067 | None:intergenic |
| ATCATCTCTTAATACTATTG+AGG | 0.521914 | 1.2:-86347365 | MS.gene74226:CDS |
| TCGTCCAAAGCAGGGTGACC+AGG | 0.522777 | 1.2:+86346589 | None:intergenic |
| ATTAATGGAGATGGTTAAGC+AGG | 0.523073 | 1.2:-86342827 | MS.gene74226:CDS |
| GCAAACTTATCCTCCTGGTA+GGG | 0.524898 | 1.2:+86340639 | None:intergenic |
| GAATTCATAGAGTCCAGTTA+TGG | 0.526092 | 1.2:-86347399 | MS.gene74226:CDS |
| TGTAGAACCAGATGCTGTAC+GGG | 0.527134 | 1.2:+86345111 | None:intergenic |
| TTGTAGAACCAGATGCTGTA+CGG | 0.527356 | 1.2:+86345110 | None:intergenic |
| TTGATTAGTCTTACTGGAGA+GGG | 0.527695 | 1.2:-86345073 | MS.gene74226:CDS |
| CTGGTAGGGGTATCCGTCGT+AGG | 0.530642 | 1.2:+86340653 | None:intergenic |
| ATCATCTAAAATGCCCATCA+AGG | 0.531529 | 1.2:+86346116 | None:intergenic |
| GCTACTTTGCAGTATCAGTC+TGG | 0.532281 | 1.2:-86341077 | MS.gene74226:CDS |
| GTACTTCAGTGCTTCGAGTG+TGG | 0.533468 | 1.2:-86345584 | MS.gene74226:intron |
| ACTGCTATCAAATGTGGAGC+CGG | 0.536559 | 1.2:+86345333 | None:intergenic |
| TGAAACAGCATTAATGGAGA+TGG | 0.538013 | 1.2:-86342836 | MS.gene74226:CDS |
| TCACCCCATCCAAGTCCAAA+TGG | 0.538801 | 1.2:+86340608 | None:intergenic |
| CGGTATCTTTGCAGGTGTTG+AGG | 0.539169 | 1.2:+86347882 | None:intergenic |
| TTGGTAACAACAAAGGATGC+TGG | 0.541111 | 1.2:-86345385 | MS.gene74226:CDS |
| TCTAGATTATCTGGGAGTGC+AGG | 0.544285 | 1.2:-86345779 | MS.gene74226:CDS |
| AGAAAGCAAACTTATCCTCC+TGG | 0.545441 | 1.2:+86340634 | None:intergenic |
| ACCTGATGCTAGCTCAGAGA+AGG | 0.548837 | 1.2:-86347506 | MS.gene74226:CDS |
| AGGTGTGGTTAAAGATGAGC+TGG | 0.550413 | 1.2:-86347281 | MS.gene74226:CDS |
| CTTAAAACATACCGTGGGGA+TGG | 0.552040 | 1.2:+86341038 | None:intergenic |
| GTGTCCTTGGAAAGAAGAGT+TGG | 0.552169 | 1.2:-86347071 | MS.gene74226:CDS |
| CGAGTACGCTAGCATTTACA+AGG | 0.557163 | 1.2:-86347859 | MS.gene74226:intron |
| GGCAGTTAGATGACAATGAT+GGG | 0.557462 | 1.2:-86346798 | MS.gene74226:CDS |
| TGTGTCAACAGGGATGCCTA+TGG | 0.558632 | 1.2:-86347918 | MS.gene74226:intron |
| ACAAGAGGAGTATCTAGACT+AGG | 0.560908 | 1.2:+86347154 | None:intergenic |
| AGTTATGGCTGAGTCTATGC+TGG | 0.562409 | 1.2:-86341102 | MS.gene74226:CDS |
| GGAGGAGTTACCGGCATCTG+AGG | 0.563692 | 1.2:-86347428 | MS.gene74226:CDS |
| TCTTCACAGCCAGAATCTCC+CGG | 0.563964 | 1.2:-86340695 | MS.gene74226:CDS |
| AAAGATGAAAGAAATAAGAA+AGG | 0.564961 | 1.2:-86347301 | MS.gene74226:CDS |
| CAGTTCTAAATAGCATGACT+CGG | 0.565813 | 1.2:+86345538 | None:intergenic |
| ATTCTAGTCTCCTCAGATGC+CGG | 0.566477 | 1.2:+86347418 | None:intergenic |
| CACCCTGCTTTGGACGAGGA+TGG | 0.566489 | 1.2:-86346583 | MS.gene74226:CDS |
| TGTGGGTGTCAAAGCAAGGC+GGG | 0.567027 | 1.2:-86346890 | MS.gene74226:CDS |
| AACATGCTTCCTTGGGAAAG+TGG | 0.568071 | 1.2:-86345715 | MS.gene74226:intron |
| AAGAGGAAAGGTCCGAGCGG+TGG | 0.571481 | 1.2:-86347639 | MS.gene74226:CDS |
| TCCAATGGCACTGAGGGGAG+AGG | 0.572143 | 1.2:-86347026 | MS.gene74226:intron |
| ATCATCAAAAGGAGCATGTG+AGG | 0.573179 | 1.2:-86347218 | MS.gene74226:CDS |
| GCCAATCATCTAGATTATCT+GGG | 0.580459 | 1.2:-86345787 | MS.gene74226:CDS |
| CAGGATCTACTGGCCTCCAA+TGG | 0.580957 | 1.2:-86346853 | MS.gene74226:CDS |
| GCTCGACATAATCCCTCTGT+TGG | 0.584398 | 1.2:-86346526 | MS.gene74226:CDS |
| TTTGATTAGTCTTACTGGAG+AGG | 0.585523 | 1.2:-86345074 | MS.gene74226:CDS |
| CAAACTTATCCTCCTGGTAG+GGG | 0.586096 | 1.2:+86340640 | None:intergenic |
| TGGATGGGGTGATCGAAACA+AGG | 0.588081 | 1.2:-86340597 | MS.gene74226:intron |
| CTACGACGGATACCCCTACC+AGG | 0.588101 | 1.2:-86340652 | MS.gene74226:CDS |
| TTCAGGAGGAAGAAGAGGAA+AGG | 0.588650 | 1.2:-86347651 | MS.gene74226:intron |
| TACCATCCTCGTCCAAAGCA+GGG | 0.589974 | 1.2:+86346581 | None:intergenic |
| TCTGGGAGTGCAGGTTGCAT+GGG | 0.591256 | 1.2:-86345770 | MS.gene74226:CDS |
| GCTCAGAGAAGGGTGTTGAT+GGG | 0.591623 | 1.2:-86347495 | MS.gene74226:CDS |
| AGCAGCAATACCATTTGTTG+AGG | 0.591699 | 1.2:+86347117 | None:intergenic |
| CAAGAGGAGTATCTAGACTA+GGG | 0.592003 | 1.2:+86347155 | None:intergenic |
| CAATACAGAAGACTCTGTCT+CGG | 0.596388 | 1.2:+86347594 | None:intergenic |
| GTTTCTGGTGCTGAATCTGT+AGG | 0.597964 | 1.2:-86347535 | MS.gene74226:CDS |
| ATGTCTTGTAGGTCCAGCCT+TGG | 0.598613 | 1.2:-86345404 | MS.gene74226:intron |
| ATAGGGGAAACCTACTAATG+TGG | 0.602696 | 1.2:-86340485 | MS.gene74226:intron |
| GGTTAAGCAGGACAACAGGC+GGG | 0.603079 | 1.2:-86342815 | MS.gene74226:CDS |
| ATTTCTGATAGGTCTTGATG+CGG | 0.605171 | 1.2:-86341889 | MS.gene74226:intron |
| GCAAGAACAAAAGGTTACAG+AGG | 0.606679 | 1.2:-86341861 | MS.gene74226:CDS |
| CACAGACAGAACACCTGTGG+GGG | 0.609799 | 1.2:-86347569 | MS.gene74226:CDS |
| GGTAGAGCGACTAGAAGAAG+AGG | 0.611682 | 1.2:-86342043 | MS.gene74226:CDS |
| AAGCTGACTGCTATCAAATG+TGG | 0.615286 | 1.2:+86345327 | None:intergenic |
| AAAGGTAACCTGAAGCACTT+GGG | 0.617219 | 1.2:+86341790 | None:intergenic |
| GACACAGACAGAACACCTGT+GGG | 0.617645 | 1.2:-86347571 | MS.gene74226:CDS |
| TGGTTAAGCAGGACAACAGG+CGG | 0.617927 | 1.2:-86342816 | MS.gene74226:CDS |
| AAGCCCTGTAAGTCAACATG+AGG | 0.619652 | 1.2:-86340443 | MS.gene74226:CDS |
| AGGTCGCACAGTAAATCCAT+AGG | 0.619964 | 1.2:+86347902 | None:intergenic |
| TGGATGGGGTAAGTTGACTG+TGG | 0.621076 | 1.2:-86348634 | MS.gene74226:CDS |
| AGGAGCTGAGGAATAAACAT+AGG | 0.621180 | 1.2:-86345255 | MS.gene74226:CDS |
| CAAGGACACGAAGCCTCTAG+TGG | 0.621659 | 1.2:+86347085 | None:intergenic |
| AGCAAACTTATCCTCCTGGT+AGG | 0.622299 | 1.2:+86340638 | None:intergenic |
| ACTATGGGTGAAAATGGATG+GGG | 0.622383 | 1.2:-86348648 | MS.gene74226:CDS |
| TTGGAAGTTCTTGTTCGTGG+GGG | 0.625449 | 1.2:-86347052 | MS.gene74226:CDS |
| TTGCATGGGTGACTGGACCA+TGG | 0.630069 | 1.2:-86345756 | MS.gene74226:CDS |
| GTTGGAAGTTCTTGTTCGTG+GGG | 0.634337 | 1.2:-86347053 | MS.gene74226:CDS |
| AAGTTCGATTGCAGGAGCTG+AGG | 0.634666 | 1.2:-86345267 | MS.gene74226:CDS |
| GAGTCACTATCTCTTGCTGA+TGG | 0.635928 | 1.2:-86347247 | MS.gene74226:CDS |
| TGAAAGAAATAAGAAAGGTG+TGG | 0.636747 | 1.2:-86347296 | MS.gene74226:CDS |
| TCCAGCCTTGGTAACAACAA+AGG | 0.637738 | 1.2:-86345392 | MS.gene74226:CDS |
| GGGGAGTTCCAATGGCACTG+AGG | 0.638061 | 1.2:-86347033 | MS.gene74226:CDS |
| AGGAGTTCTATGATGTTGAG+AGG | 0.638153 | 1.2:-86347183 | MS.gene74226:CDS |
| ATGGAAAGGACAGATTGAGA+AGG | 0.639006 | 1.2:-86346740 | MS.gene74226:intron |
| TTTCTGATAGGTCTTGATGC+GGG | 0.639713 | 1.2:-86341888 | MS.gene74226:intron |
| TGAAAATGGTAGTCATAAGG+AGG | 0.641555 | 1.2:-86347446 | MS.gene74226:CDS |
| ATGGGGTAAGTTGACTGTGG+AGG | 0.641944 | 1.2:-86348631 | MS.gene74226:CDS |
| AAAGCTTTGAGGGATGCTAA+GGG | 0.642149 | 1.2:-86345190 | MS.gene74226:CDS |
| ACCTGACAGTAACCAACAGA+GGG | 0.642883 | 1.2:+86346514 | None:intergenic |
| GGACACAGACAGAACACCTG+TGG | 0.645359 | 1.2:-86347572 | MS.gene74226:CDS |
| CAATTGAAGAAAGATCAAAA+GGG | 0.650314 | 1.2:-86345216 | MS.gene74226:CDS |
| GTACTCAAGCCATCAACAAG+AGG | 0.653340 | 1.2:+86347139 | None:intergenic |
| CAGGCGGGAACTGAGCGCCA+AGG | 0.658763 | 1.2:-86342800 | MS.gene74226:intron |
| CCTGATGCTAGCTCAGAGAA+GGG | 0.661370 | 1.2:-86347505 | MS.gene74226:CDS |
| CTAAACTGCAACCATCCCCA+CGG | 0.666694 | 1.2:-86341049 | MS.gene74226:intron |
| TGTAAATGCTAGCGTACTCG+CGG | 0.667956 | 1.2:+86347862 | None:intergenic |
| GGGTGACCAGGAAATGTCCG+CGG | 0.668654 | 1.2:+86346601 | None:intergenic |
| AAAACCTGACCACTTTCCCA+AGG | 0.674975 | 1.2:+86345706 | None:intergenic |
| TTCGTGTTAAGAAGAAAACT+GGG | 0.676917 | 1.2:-86347330 | MS.gene74226:CDS |
| TTGTGGGTGTCAAAGCAAGG+CGG | 0.684016 | 1.2:-86346891 | MS.gene74226:CDS |
| GGAGTTCCAATGGCACTGAG+GGG | 0.686267 | 1.2:-86347031 | MS.gene74226:CDS |
| GACCTGACAGTAACCAACAG+AGG | 0.688150 | 1.2:+86346513 | None:intergenic |
| AGCCCTGTAAGTCAACATGA+GGG | 0.698307 | 1.2:-86340442 | MS.gene74226:CDS |
| ATGTGAGGAAGATTCTGACG+AGG | 0.698919 | 1.2:-86347203 | MS.gene74226:CDS |
| AAACAATCAAGAGCCTACGA+CGG | 0.712030 | 1.2:-86340666 | MS.gene74226:CDS |
| TGTTTGTGCAGGATCTGCCG+CGG | 0.713471 | 1.2:-86346618 | MS.gene74226:intron |
| AAGAAGAGGAAAGGTCCGAG+CGG | 0.722767 | 1.2:-86347642 | MS.gene74226:CDS |
| ACACAGACAGAACACCTGTG+GGG | 0.731321 | 1.2:-86347570 | MS.gene74226:CDS |
| CGACGGATACCCCTACCAGG+AGG | 0.749834 | 1.2:-86340649 | MS.gene74226:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 86340402 | 86348667 | 86340402 | ID=MS.gene74226 |
| chr1.2 | mRNA | 86340402 | 86348667 | 86340402 | ID=MS.gene74226.t1;Parent=MS.gene74226 |
| chr1.2 | exon | 86348621 | 86348667 | 86348621 | ID=MS.gene74226.t1.exon1;Parent=MS.gene74226.t1 |
| chr1.2 | CDS | 86348621 | 86348667 | 86348621 | ID=cds.MS.gene74226.t1;Parent=MS.gene74226.t1 |
| chr1.2 | exon | 86347860 | 86347929 | 86347860 | ID=MS.gene74226.t1.exon2;Parent=MS.gene74226.t1 |
| chr1.2 | CDS | 86347860 | 86347929 | 86347860 | ID=cds.MS.gene74226.t1;Parent=MS.gene74226.t1 |
| chr1.2 | exon | 86347027 | 86347668 | 86347027 | ID=MS.gene74226.t1.exon3;Parent=MS.gene74226.t1 |
| chr1.2 | CDS | 86347027 | 86347668 | 86347027 | ID=cds.MS.gene74226.t1;Parent=MS.gene74226.t1 |
| chr1.2 | exon | 86346741 | 86346926 | 86346741 | ID=MS.gene74226.t1.exon4;Parent=MS.gene74226.t1 |
| chr1.2 | CDS | 86346741 | 86346926 | 86346741 | ID=cds.MS.gene74226.t1;Parent=MS.gene74226.t1 |
| chr1.2 | exon | 86346516 | 86346629 | 86346516 | ID=MS.gene74226.t1.exon5;Parent=MS.gene74226.t1 |
| chr1.2 | CDS | 86346516 | 86346629 | 86346516 | ID=cds.MS.gene74226.t1;Parent=MS.gene74226.t1 |
| chr1.2 | exon | 86346348 | 86346406 | 86346348 | ID=MS.gene74226.t1.exon6;Parent=MS.gene74226.t1 |
| chr1.2 | CDS | 86346348 | 86346406 | 86346348 | ID=cds.MS.gene74226.t1;Parent=MS.gene74226.t1 |
| chr1.2 | exon | 86346074 | 86346140 | 86346074 | ID=MS.gene74226.t1.exon7;Parent=MS.gene74226.t1 |
| chr1.2 | CDS | 86346074 | 86346140 | 86346074 | ID=cds.MS.gene74226.t1;Parent=MS.gene74226.t1 |
| chr1.2 | exon | 86345918 | 86345969 | 86345918 | ID=MS.gene74226.t1.exon8;Parent=MS.gene74226.t1 |
| chr1.2 | CDS | 86345918 | 86345969 | 86345918 | ID=cds.MS.gene74226.t1;Parent=MS.gene74226.t1 |
| chr1.2 | exon | 86345716 | 86345808 | 86345716 | ID=MS.gene74226.t1.exon9;Parent=MS.gene74226.t1 |
| chr1.2 | CDS | 86345716 | 86345808 | 86345716 | ID=cds.MS.gene74226.t1;Parent=MS.gene74226.t1 |
| chr1.2 | exon | 86345514 | 86345597 | 86345514 | ID=MS.gene74226.t1.exon10;Parent=MS.gene74226.t1 |
| chr1.2 | CDS | 86345514 | 86345597 | 86345514 | ID=cds.MS.gene74226.t1;Parent=MS.gene74226.t1 |
| chr1.2 | exon | 86345039 | 86345415 | 86345039 | ID=MS.gene74226.t1.exon11;Parent=MS.gene74226.t1 |
| chr1.2 | CDS | 86345039 | 86345415 | 86345039 | ID=cds.MS.gene74226.t1;Parent=MS.gene74226.t1 |
| chr1.2 | exon | 86343659 | 86343720 | 86343659 | ID=MS.gene74226.t1.exon12;Parent=MS.gene74226.t1 |
| chr1.2 | CDS | 86343659 | 86343720 | 86343659 | ID=cds.MS.gene74226.t1;Parent=MS.gene74226.t1 |
| chr1.2 | exon | 86342801 | 86342870 | 86342801 | ID=MS.gene74226.t1.exon13;Parent=MS.gene74226.t1 |
| chr1.2 | CDS | 86342801 | 86342870 | 86342801 | ID=cds.MS.gene74226.t1;Parent=MS.gene74226.t1 |
| chr1.2 | exon | 86341984 | 86342064 | 86341984 | ID=MS.gene74226.t1.exon14;Parent=MS.gene74226.t1 |
| chr1.2 | CDS | 86341984 | 86342064 | 86341984 | ID=cds.MS.gene74226.t1;Parent=MS.gene74226.t1 |
| chr1.2 | exon | 86341799 | 86341900 | 86341799 | ID=MS.gene74226.t1.exon15;Parent=MS.gene74226.t1 |
| chr1.2 | CDS | 86341799 | 86341900 | 86341799 | ID=cds.MS.gene74226.t1;Parent=MS.gene74226.t1 |
| chr1.2 | exon | 86341050 | 86341174 | 86341050 | ID=MS.gene74226.t1.exon16;Parent=MS.gene74226.t1 |
| chr1.2 | CDS | 86341050 | 86341174 | 86341050 | ID=cds.MS.gene74226.t1;Parent=MS.gene74226.t1 |
| chr1.2 | exon | 86340598 | 86340718 | 86340598 | ID=MS.gene74226.t1.exon17;Parent=MS.gene74226.t1 |
| chr1.2 | CDS | 86340598 | 86340718 | 86340598 | ID=cds.MS.gene74226.t1;Parent=MS.gene74226.t1 |
| chr1.2 | exon | 86340402 | 86340503 | 86340402 | ID=MS.gene74226.t1.exon18;Parent=MS.gene74226.t1 |
| chr1.2 | CDS | 86340402 | 86340503 | 86340402 | ID=cds.MS.gene74226.t1;Parent=MS.gene74226.t1 |
| Gene Sequence |
| Protein sequence |
