Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030080.t1 | XP_003617477.2 | 98.1 | 157 | 3 | 0 | 1 | 157 | 1 | 157 | 3.50E-79 | 305.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030080.t1 | Q9PV94 | 60.1 | 148 | 55 | 2 | 1 | 147 | 1 | 145 | 5.4e-41 | 169.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030080.t1 | G7K3F8 | 98.1 | 157 | 3 | 0 | 1 | 157 | 1 | 157 | 2.5e-79 | 305.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene79126 | MS.gene030080 | PPI |
| MS.gene067039 | MS.gene030080 | PPI |
| MS.gene045227 | MS.gene030080 | PPI |
| MS.gene75567 | MS.gene030080 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030080.t1 | MTR_5g092010 | 96.797 | 281 | 4 | 1 | 1 | 281 | 1 | 276 | 4.78e-180 | 496 |
| MS.gene030080.t1 | MTR_8g080090 | 94.253 | 174 | 5 | 2 | 1 | 173 | 1 | 170 | 9.40e-94 | 278 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030080.t1 | AT5G44500 | 84.868 | 152 | 23 | 0 | 1 | 152 | 1 | 152 | 4.84e-90 | 268 |
| MS.gene030080.t1 | AT5G44500 | 84.868 | 152 | 23 | 0 | 1 | 152 | 1 | 152 | 4.84e-90 | 268 |
| MS.gene030080.t1 | AT4G20440 | 88.816 | 152 | 16 | 1 | 1 | 152 | 1 | 151 | 1.06e-82 | 249 |
| MS.gene030080.t1 | AT4G20440 | 88.816 | 152 | 16 | 1 | 1 | 152 | 1 | 151 | 1.06e-82 | 249 |
| MS.gene030080.t1 | AT4G20440 | 88.816 | 152 | 16 | 1 | 1 | 152 | 1 | 151 | 1.06e-82 | 249 |
| MS.gene030080.t1 | AT4G20440 | 88.816 | 152 | 16 | 1 | 1 | 152 | 1 | 151 | 1.06e-82 | 249 |
| MS.gene030080.t1 | AT4G20440 | 88.816 | 152 | 16 | 1 | 1 | 152 | 1 | 151 | 1.06e-82 | 249 |
Find 143 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTATGCCGCCGGGGCAATT+TGG | 0.120570 | 5.2:-77819914 | MS.gene030080:CDS |
| GGAAGTGGTGTTCCGGTTTA+TGG | 0.187174 | 5.2:-77819728 | MS.gene030080:CDS |
| ATTGATGTATTGAAGCATTT+TGG | 0.205199 | 5.2:+77820471 | None:intergenic |
| CACTGTTGCTGCTGTTGATT+TGG | 0.210852 | 5.2:+77819668 | None:intergenic |
| CTATGCCGCCGGGGCAATTT+GGG | 0.264839 | 5.2:-77819913 | MS.gene030080:CDS |
| TGCTGTTGATTTGGAGCATT+TGG | 0.292429 | 5.2:+77819677 | None:intergenic |
| CAAGCTCAGCCTGGTCTTGC+TGG | 0.294341 | 5.2:-77820121 | MS.gene030080:CDS |
| GGTATGCCACCTCCTCAGTA+TGG | 0.303881 | 5.2:-77819860 | MS.gene030080:CDS |
| TGCAGCAGCATTTACAGCTT+TGG | 0.337717 | 5.2:+77820204 | None:intergenic |
| TCCTCCTGGAAGTGGTGTTC+CGG | 0.346552 | 5.2:-77819735 | MS.gene030080:CDS |
| ACTCGGTTTGGTTCTACTTC+GGG | 0.350273 | 5.2:-77820284 | MS.gene030080:CDS |
| GGTGGTCCTCCTCCGCAATT+TGG | 0.372572 | 5.2:-77819881 | MS.gene030080:CDS |
| CCAGGAGGAGGAGGCATTCC+AGG | 0.379156 | 5.2:+77819749 | None:intergenic |
| CCTCCTGGTCAGATGGTTAG+AGG | 0.388518 | 5.2:-77819815 | MS.gene030080:CDS |
| TCAACTTGTCGGAAAATTCA+TGG | 0.388812 | 5.2:-77820416 | MS.gene030080:CDS |
| CCAGGCTGAGCTTGAATAAC+CGG | 0.392249 | 5.2:+77820130 | None:intergenic |
| CGAGGCGGTGGCTGCATTCC+AGG | 0.395962 | 5.2:+77819773 | None:intergenic |
| CCTGGAATGCCTCCTCCTCC+TGG | 0.401308 | 5.2:-77819749 | MS.gene030080:CDS |
| TGTCCAGGATGTCCAGGATA+TGG | 0.405313 | 5.2:+77819971 | None:intergenic |
| CGAGTGTGCGGCGGTCTTCA+CGG | 0.406911 | 5.2:+77820302 | None:intergenic |
| TGACCAGGCGGACGCATAAC+CGG | 0.411010 | 5.2:+77820013 | None:intergenic |
| TCAGTATGGGCAGAGACCTA+TGG | 0.417999 | 5.2:-77819846 | MS.gene030080:CDS |
| GCAATGGCTGGTCCTGGAAT+TGG | 0.421320 | 5.2:-77820184 | MS.gene030080:CDS |
| CCTGCAGCACGACCAATTCC+AGG | 0.425807 | 5.2:+77820172 | None:intergenic |
| CGACAAGTTGACGACCGTCT+TGG | 0.426215 | 5.2:+77820428 | None:intergenic |
| CACTCGGTTTGGTTCTACTT+CGG | 0.427788 | 5.2:-77820285 | MS.gene030080:CDS |
| ATGCCATATCCTGGACATCC+TGG | 0.445798 | 5.2:-77819974 | MS.gene030080:CDS |
| CCAAATTGCCCCGGCGGCAT+AGG | 0.449138 | 5.2:+77819914 | None:intergenic |
| CCCACCTCCTCCTGGTCAGA+TGG | 0.451634 | 5.2:-77819822 | MS.gene030080:CDS |
| GCTGCTGCAATGGCTGGTCC+TGG | 0.451669 | 5.2:-77820190 | MS.gene030080:CDS |
| CGCCACATGAATCTTGTTCT+CGG | 0.452233 | 5.2:-77820385 | MS.gene030080:CDS |
| ATGCAGCCACCGCCTCGTCC+TGG | 0.453454 | 5.2:-77819767 | MS.gene030080:CDS |
| GGAGGAGGCATGCCAGGCCG+AGG | 0.453758 | 5.2:+77819701 | None:intergenic |
| CCTCCTGCTCCTCCTCGTCC+TGG | 0.453758 | 5.2:-77819791 | MS.gene030080:CDS |
| AGACCGCCGCACACTCGGTT+TGG | 0.455844 | 5.2:-77820296 | MS.gene030080:CDS |
| TTTGGTGGAGGAGGCATGCC+AGG | 0.462102 | 5.2:+77819695 | None:intergenic |
| GTTGTTTCGATGACAGTTGA+AGG | 0.465323 | 5.2:-77820253 | MS.gene030080:CDS |
| GGCCGAGGTGGACCATAAAC+CGG | 0.466333 | 5.2:+77819716 | None:intergenic |
| GGCATTCCAGGACGAGGCGG+TGG | 0.470062 | 5.2:+77819761 | None:intergenic |
| GAACGAGATTCCTCCGGTGG+TGG | 0.470828 | 5.2:+77820226 | None:intergenic |
| CCACCGCCTCCTATGCCGCC+GGG | 0.471646 | 5.2:-77819923 | MS.gene030080:CDS |
| ACCATCTGACCAGGAGGAGG+TGG | 0.471852 | 5.2:+77819821 | None:intergenic |
| CGAGATTCCTCCGGTGGTGG+AGG | 0.477225 | 5.2:+77820229 | None:intergenic |
| CAAGACGGTCGTCAACTTGT+CGG | 0.478808 | 5.2:-77820427 | MS.gene030080:CDS |
| GGTGTAGGTGGACCTGCTCC+TGG | 0.479069 | 5.2:-77820088 | MS.gene030080:CDS |
| GCACCACCAGGATATGATAC+TGG | 0.479978 | 5.2:+77820037 | None:intergenic |
| GCTGGTCCTGTTCGTGGTGT+AGG | 0.480465 | 5.2:-77820103 | MS.gene030080:CDS |
| GGTCTTGCTGGTCCTGTTCG+TGG | 0.480513 | 5.2:-77820109 | MS.gene030080:CDS |
| TCGAAAACTTCCACCGGCGA+AGG | 0.481236 | 5.2:-77820347 | MS.gene030080:CDS |
| GTTTATGGTCCACCTCGGCC+TGG | 0.481603 | 5.2:-77819713 | MS.gene030080:CDS |
| GTAAATGCTGCTGCAATGGC+TGG | 0.484369 | 5.2:-77820196 | MS.gene030080:CDS |
| CCTGGAATTGGTCGTGCTGC+AGG | 0.486165 | 5.2:-77820172 | MS.gene030080:CDS |
| ATCATATCCTGGTGGTGCTC+CGG | 0.486386 | 5.2:-77820032 | MS.gene030080:CDS |
| ATTGGTCGTGCTGCAGGTAG+AGG | 0.488956 | 5.2:-77820166 | MS.gene030080:CDS |
| TAAACCGGAACACCACTTCC+AGG | 0.492870 | 5.2:+77819731 | None:intergenic |
| GGCATACCAAATTGCGGAGG+AGG | 0.492946 | 5.2:+77819875 | None:intergenic |
| TCCACCGCCTCCTATGCCGC+CGG | 0.493463 | 5.2:-77819924 | MS.gene030080:CDS |
| GCTCCGGTTATGCGTCCGCC+TGG | 0.493981 | 5.2:-77820016 | MS.gene030080:CDS |
| ATTCCAGGACGAGGAGGAGC+AGG | 0.494294 | 5.2:+77819788 | None:intergenic |
| CTCTGCCCATACTGAGGAGG+TGG | 0.494871 | 5.2:+77819854 | None:intergenic |
| ATGCCTCCTCCTCCTGGAAG+TGG | 0.499579 | 5.2:-77819743 | MS.gene030080:CDS |
| CCTATGGGCCCACCTCCTCC+TGG | 0.499583 | 5.2:-77819830 | MS.gene030080:CDS |
| GGTCCACCTACACCACGAAC+AGG | 0.501617 | 5.2:+77820097 | None:intergenic |
| GTTATGCGTCCGCCTGGTCA+AGG | 0.502014 | 5.2:-77820010 | MS.gene030080:CDS |
| CCAGGAGGAGGTGGGCCCAT+AGG | 0.503981 | 5.2:+77819830 | None:intergenic |
| GGGCAATTTGGGCAGAGACC+AGG | 0.504430 | 5.2:-77819902 | MS.gene030080:CDS |
| TTTGGAGCATTTGGTGGAGG+AGG | 0.507736 | 5.2:+77819686 | None:intergenic |
| CGTGAAGACCGCCGCACACT+CGG | 0.516055 | 5.2:-77820301 | MS.gene030080:CDS |
| GTCTTCACGGTCGCCGTCGG+TGG | 0.516113 | 5.2:+77820315 | None:intergenic |
| AATTGCCCCGGCGGCATAGG+AGG | 0.518983 | 5.2:+77819917 | None:intergenic |
| GTATGCCACCTCCTCAGTAT+GGG | 0.520179 | 5.2:-77819859 | MS.gene030080:CDS |
| CAGTATGGGCAGAGACCTAT+GGG | 0.520524 | 5.2:-77819845 | MS.gene030080:CDS |
| TGCCCCGGCGGCATAGGAGG+CGG | 0.521351 | 5.2:+77819920 | None:intergenic |
| CCGGTTATTCAAGCTCAGCC+TGG | 0.521861 | 5.2:-77820130 | MS.gene030080:CDS |
| ATCTGCGGTGGACCTTGTCC+AGG | 0.522039 | 5.2:+77819956 | None:intergenic |
| CCTGGTCAAATGCCATATCC+TGG | 0.523384 | 5.2:-77819983 | MS.gene030080:CDS |
| AGCTGTAAATGCTGCTGCAA+TGG | 0.530081 | 5.2:-77820200 | MS.gene030080:CDS |
| GGACCTTGTCCAGGATGTCC+AGG | 0.530197 | 5.2:+77819965 | None:intergenic |
| TGACCAGGTGGACCTTGACC+AGG | 0.530553 | 5.2:+77819998 | None:intergenic |
| CGCATAACCGGAGCACCACC+AGG | 0.532565 | 5.2:+77820025 | None:intergenic |
| TGATTTGGAGCATTTGGTGG+AGG | 0.533563 | 5.2:+77819683 | None:intergenic |
| CCAGGATATGGCATTTGACC+AGG | 0.535882 | 5.2:+77819983 | None:intergenic |
| TGTTGATTTGGAGCATTTGG+TGG | 0.537037 | 5.2:+77819680 | None:intergenic |
| GGCTGCATCATACCAGGAGC+AGG | 0.537879 | 5.2:+77820076 | None:intergenic |
| CGTCCGCCAGTATCATATCC+TGG | 0.538133 | 5.2:-77820043 | MS.gene030080:CDS |
| AAGGTCCACCGCAGATGGTG+AGG | 0.541082 | 5.2:-77819949 | MS.gene030080:CDS |
| GGAGGAGGCATTCCAGGACG+AGG | 0.543227 | 5.2:+77819755 | None:intergenic |
| CTCGGTTTGGTTCTACTTCG+GGG | 0.543292 | 5.2:-77820283 | MS.gene030080:CDS |
| CGAAAACTTCCACCGGCGAA+GGG | 0.547258 | 5.2:-77820346 | MS.gene030080:CDS |
| GCGGTCTTCACGGTCGCCGT+CGG | 0.552395 | 5.2:+77820312 | None:intergenic |
| TGGACAAGGTCCACCGCAGA+TGG | 0.555676 | 5.2:-77819954 | MS.gene030080:CDS |
| CCCGGCGGCATAGGAGGCGG+TGG | 0.555943 | 5.2:+77819923 | None:intergenic |
| ATCTGCGGCTGCATCATACC+AGG | 0.556260 | 5.2:+77820070 | None:intergenic |
| CCGCCTGGTCAAGGTCCACC+TGG | 0.556675 | 5.2:-77820001 | MS.gene030080:CDS |
| GGAGGCATGCCAGGCCGAGG+TGG | 0.567307 | 5.2:+77819704 | None:intergenic |
| CGAACAGGACCAGCAAGACC+AGG | 0.568021 | 5.2:+77820112 | None:intergenic |
| TTCCGGTTTATGGTCCACCT+CGG | 0.570223 | 5.2:-77819718 | MS.gene030080:CDS |
| AGTTGAAGGTCCTCCACCAC+CGG | 0.570304 | 5.2:-77820239 | MS.gene030080:CDS |
| TGCAGGTAGAGGTATTCCTC+CGG | 0.570514 | 5.2:-77820155 | MS.gene030080:CDS |
| TGAGCTTGAATAACCGGCGC+CGG | 0.578220 | 5.2:+77820136 | None:intergenic |
| ACACCACTTCCAGGAGGAGG+AGG | 0.578227 | 5.2:+77819740 | None:intergenic |
| GGACCCCTCACCATCTGCGG+TGG | 0.578400 | 5.2:+77819944 | None:intergenic |
| TTGGAACGAGATTCCTCCGG+TGG | 0.588436 | 5.2:+77820223 | None:intergenic |
| TAGAGGTATTCCTCCGGCGC+CGG | 0.590446 | 5.2:-77820149 | MS.gene030080:CDS |
| CTCTGCCCAAATTGCCCCGG+CGG | 0.590935 | 5.2:+77819908 | None:intergenic |
| AATTGCGGAGGAGGACCACC+TGG | 0.591266 | 5.2:+77819884 | None:intergenic |
| GGTCCTGTTCGTGGTGTAGG+TGG | 0.591284 | 5.2:-77820100 | MS.gene030080:CDS |
| CTAACCATCTGACCAGGAGG+AGG | 0.594137 | 5.2:+77819818 | None:intergenic |
| CCAGGACGAGGAGGAGCAGG+AGG | 0.595102 | 5.2:+77819791 | None:intergenic |
| GCTTTGGAACGAGATTCCTC+CGG | 0.595135 | 5.2:+77820220 | None:intergenic |
| AGGTCCACCGCAGATGGTGA+GGG | 0.597838 | 5.2:-77819948 | MS.gene030080:CDS |
| AGAGTTTCGAAAACTTCCAC+CGG | 0.602174 | 5.2:-77820353 | MS.gene030080:CDS |
| GGTCTCTGCCCAAATTGCCC+CGG | 0.603588 | 5.2:+77819905 | None:intergenic |
| GGTGGCTGCATTCCAGGACG+AGG | 0.605433 | 5.2:+77819779 | None:intergenic |
| CACCGCCTCCTATGCCGCCG+GGG | 0.606476 | 5.2:-77819922 | MS.gene030080:CDS |
| GGCTGCATTCCAGGACGAGG+AGG | 0.614859 | 5.2:+77819782 | None:intergenic |
| GGTGGACCCCTCACCATCTG+CGG | 0.614870 | 5.2:+77819941 | None:intergenic |
| CAATTTGGGCAGAGACCAGG+TGG | 0.620080 | 5.2:-77819899 | MS.gene030080:CDS |
| GGTCCTCTAACCATCTGACC+AGG | 0.622862 | 5.2:+77819812 | None:intergenic |
| GGAACACCACTTCCAGGAGG+AGG | 0.623836 | 5.2:+77819737 | None:intergenic |
| GGTCCACCGCAGATGGTGAG+GGG | 0.627488 | 5.2:-77819947 | MS.gene030080:CDS |
| CCATCTGACCAGGAGGAGGT+GGG | 0.631940 | 5.2:+77819822 | None:intergenic |
| GTAGAACCAAACCGAGTGTG+CGG | 0.635167 | 5.2:+77820290 | None:intergenic |
| GCTTGAATAACCGGCGCCGG+AGG | 0.636298 | 5.2:+77820139 | None:intergenic |
| TATCCTGGACATCCTGGACA+AGG | 0.636817 | 5.2:-77819968 | MS.gene030080:CDS |
| GGAGGCATTCCAGGACGAGG+CGG | 0.646005 | 5.2:+77819758 | None:intergenic |
| TGAAGGTCCTCCACCACCGG+AGG | 0.647929 | 5.2:-77820236 | MS.gene030080:CDS |
| GGATATGGCATTTGACCAGG+TGG | 0.660601 | 5.2:+77819986 | None:intergenic |
| GGTCTCTGCCCATACTGAGG+AGG | 0.662332 | 5.2:+77819851 | None:intergenic |
| ACTGGCGGACGCGAAATCTG+CGG | 0.665825 | 5.2:+77820055 | None:intergenic |
| ATAGGTCTCTGCCCATACTG+AGG | 0.666393 | 5.2:+77819848 | None:intergenic |
| CGAGAACAAGATTCATGTGG+CGG | 0.667753 | 5.2:+77820386 | None:intergenic |
| CGCCGAGAACAAGATTCATG+TGG | 0.676790 | 5.2:+77820383 | None:intergenic |
| GGAGGTGGCATACCAAATTG+CGG | 0.683306 | 5.2:+77819869 | None:intergenic |
| AAGGGTAAGAAAACCACCGA+CGG | 0.686452 | 5.2:-77820328 | MS.gene030080:CDS |
| CCTCTAACCATCTGACCAGG+AGG | 0.688741 | 5.2:+77819815 | None:intergenic |
| CCAGGTGGACCTTGACCAGG+CGG | 0.694084 | 5.2:+77820001 | None:intergenic |
| GAACCAAACCGAGTGTGCGG+CGG | 0.694201 | 5.2:+77820293 | None:intergenic |
| CCACCAGGATATGATACTGG+CGG | 0.702997 | 5.2:+77820040 | None:intergenic |
| GGTGGCATACCAAATTGCGG+AGG | 0.706492 | 5.2:+77819872 | None:intergenic |
| ATGCGAGTAACAATCCAAGA+CGG | 0.723721 | 5.2:-77820442 | MS.gene030080:CDS |
| ACCGGAACACCACTTCCAGG+AGG | 0.726433 | 5.2:+77819734 | None:intergenic |
| CCGCCAGTATCATATCCTGG+TGG | 0.734163 | 5.2:-77820040 | MS.gene030080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGATGTATTGAAGCATTT+TGG | + | chr5.2:77819689-77819708 | None:intergenic | 25.0% |
| TCAACTTGTCGGAAAATTCA+TGG | - | chr5.2:77819741-77819760 | MS.gene030080:CDS | 35.0% | |
| AGAGTTTCGAAAACTTCCAC+CGG | - | chr5.2:77819804-77819823 | MS.gene030080:CDS | 40.0% | |
| ATGCGAGTAACAATCCAAGA+CGG | - | chr5.2:77819715-77819734 | MS.gene030080:CDS | 40.0% | |
| ! | GTTGTTTCGATGACAGTTGA+AGG | - | chr5.2:77819904-77819923 | MS.gene030080:CDS | 40.0% |
| !! | TGCTGTTGATTTGGAGCATT+TGG | + | chr5.2:77820483-77820502 | None:intergenic | 40.0% |
| !! | TGTTGATTTGGAGCATTTGG+TGG | + | chr5.2:77820480-77820499 | None:intergenic | 40.0% |
| AAGGGTAAGAAAACCACCGA+CGG | - | chr5.2:77819829-77819848 | MS.gene030080:CDS | 45.0% | |
| AGCTGTAAATGCTGCTGCAA+TGG | - | chr5.2:77819957-77819976 | MS.gene030080:CDS | 45.0% | |
| CGAGAACAAGATTCATGTGG+CGG | + | chr5.2:77819774-77819793 | None:intergenic | 45.0% | |
| CGCCACATGAATCTTGTTCT+CGG | - | chr5.2:77819772-77819791 | MS.gene030080:CDS | 45.0% | |
| TGCAGCAGCATTTACAGCTT+TGG | + | chr5.2:77819956-77819975 | None:intergenic | 45.0% | |
| ! | CACTGTTGCTGCTGTTGATT+TGG | + | chr5.2:77820492-77820511 | None:intergenic | 45.0% |
| ! | TGATTTGGAGCATTTGGTGG+AGG | + | chr5.2:77820477-77820496 | None:intergenic | 45.0% |
| !! | ACTCGGTTTGGTTCTACTTC+GGG | - | chr5.2:77819873-77819892 | MS.gene030080:CDS | 45.0% |
| !! | CACTCGGTTTGGTTCTACTT+CGG | - | chr5.2:77819872-77819891 | MS.gene030080:CDS | 45.0% |
| ATAGGTCTCTGCCCATACTG+AGG | + | chr5.2:77820312-77820331 | None:intergenic | 50.0% | |
| ATGCCATATCCTGGACATCC+TGG | - | chr5.2:77820183-77820202 | MS.gene030080:CDS | 50.0% | |
| CAAGACGGTCGTCAACTTGT+CGG | - | chr5.2:77819730-77819749 | MS.gene030080:CDS | 50.0% | |
| CAGTATGGGCAGAGACCTAT+GGG | - | chr5.2:77820312-77820331 | MS.gene030080:CDS | 50.0% | |
| CCACCAGGATATGATACTGG+CGG | + | chr5.2:77820120-77820139 | None:intergenic | 50.0% | |
| CCAGGATATGGCATTTGACC+AGG | + | chr5.2:77820177-77820196 | None:intergenic | 50.0% | |
| CCAGGCTGAGCTTGAATAAC+CGG | + | chr5.2:77820030-77820049 | None:intergenic | 50.0% | |
| CCTGGTCAAATGCCATATCC+TGG | - | chr5.2:77820174-77820193 | MS.gene030080:CDS | 50.0% | |
| CGCCGAGAACAAGATTCATG+TGG | + | chr5.2:77819777-77819796 | None:intergenic | 50.0% | |
| GCACCACCAGGATATGATAC+TGG | + | chr5.2:77820123-77820142 | None:intergenic | 50.0% | |
| GGAAGTGGTGTTCCGGTTTA+TGG | - | chr5.2:77820429-77820448 | MS.gene030080:CDS | 50.0% | |
| GGAGGTGGCATACCAAATTG+CGG | + | chr5.2:77820291-77820310 | None:intergenic | 50.0% | |
| GGATATGGCATTTGACCAGG+TGG | + | chr5.2:77820174-77820193 | None:intergenic | 50.0% | |
| GTAAATGCTGCTGCAATGGC+TGG | - | chr5.2:77819961-77819980 | MS.gene030080:CDS | 50.0% | |
| GTAGAACCAAACCGAGTGTG+CGG | + | chr5.2:77819870-77819889 | None:intergenic | 50.0% | |
| GTATGCCACCTCCTCAGTAT+GGG | - | chr5.2:77820298-77820317 | MS.gene030080:CDS | 50.0% | |
| TAAACCGGAACACCACTTCC+AGG | + | chr5.2:77820429-77820448 | None:intergenic | 50.0% | |
| TATCCTGGACATCCTGGACA+AGG | - | chr5.2:77820189-77820208 | MS.gene030080:CDS | 50.0% | |
| TCAGTATGGGCAGAGACCTA+TGG | - | chr5.2:77820311-77820330 | MS.gene030080:CDS | 50.0% | |
| TGTCCAGGATGTCCAGGATA+TGG | + | chr5.2:77820189-77820208 | None:intergenic | 50.0% | |
| TTCCGGTTTATGGTCCACCT+CGG | - | chr5.2:77820439-77820458 | MS.gene030080:CDS | 50.0% | |
| ! | ATCATATCCTGGTGGTGCTC+CGG | - | chr5.2:77820125-77820144 | MS.gene030080:CDS | 50.0% |
| ! | GTGGTTTTCTTACCCTTCGC+CGG | + | chr5.2:77819826-77819845 | None:intergenic | 50.0% |
| ! | TTTGGAGCATTTGGTGGAGG+AGG | + | chr5.2:77820474-77820493 | None:intergenic | 50.0% |
| !! | CTCGGTTTGGTTCTACTTCG+GGG | - | chr5.2:77819874-77819893 | MS.gene030080:CDS | 50.0% |
| !! | GCTTTGGAACGAGATTCCTC+CGG | + | chr5.2:77819940-77819959 | None:intergenic | 50.0% |
| !! | TGCAGGTAGAGGTATTCCTC+CGG | - | chr5.2:77820002-77820021 | MS.gene030080:CDS | 50.0% |
| AGTTGAAGGTCCTCCACCAC+CGG | - | chr5.2:77819918-77819937 | MS.gene030080:CDS | 55.0% | |
| ATCTGCGGCTGCATCATACC+AGG | + | chr5.2:77820090-77820109 | None:intergenic | 55.0% | |
| ATTGGTCGTGCTGCAGGTAG+AGG | - | chr5.2:77819991-77820010 | MS.gene030080:CDS | 55.0% | |
| CAATTTGGGCAGAGACCAGG+TGG | - | chr5.2:77820258-77820277 | MS.gene030080:CDS | 55.0% | |
| CCGCCAGTATCATATCCTGG+TGG | - | chr5.2:77820117-77820136 | MS.gene030080:CDS | 55.0% | |
| CCGGTTATTCAAGCTCAGCC+TGG | - | chr5.2:77820027-77820046 | MS.gene030080:CDS | 55.0% | |
| CCTCCTGGTCAGATGGTTAG+AGG | - | chr5.2:77820342-77820361 | MS.gene030080:CDS | 55.0% | |
| CCTCTAACCATCTGACCAGG+AGG | + | chr5.2:77820345-77820364 | None:intergenic | 55.0% | |
| CGAAAACTTCCACCGGCGAA+GGG | - | chr5.2:77819811-77819830 | MS.gene030080:CDS | 55.0% | |
| CGTCCGCCAGTATCATATCC+TGG | - | chr5.2:77820114-77820133 | MS.gene030080:CDS | 55.0% | |
| CTAACCATCTGACCAGGAGG+AGG | + | chr5.2:77820342-77820361 | None:intergenic | 55.0% | |
| GGCATACCAAATTGCGGAGG+AGG | + | chr5.2:77820285-77820304 | None:intergenic | 55.0% | |
| GGTATGCCACCTCCTCAGTA+TGG | - | chr5.2:77820297-77820316 | MS.gene030080:CDS | 55.0% | |
| GGTCCTCTAACCATCTGACC+AGG | + | chr5.2:77820348-77820367 | None:intergenic | 55.0% | |
| GGTGGCATACCAAATTGCGG+AGG | + | chr5.2:77820288-77820307 | None:intergenic | 55.0% | |
| TCCTCCTGGAAGTGGTGTTC+CGG | - | chr5.2:77820422-77820441 | MS.gene030080:CDS | 55.0% | |
| TCGAAAACTTCCACCGGCGA+AGG | - | chr5.2:77819810-77819829 | MS.gene030080:CDS | 55.0% | |
| TGAGCTTGAATAACCGGCGC+CGG | + | chr5.2:77820024-77820043 | None:intergenic | 55.0% | |
| TTGGAACGAGATTCCTCCGG+TGG | + | chr5.2:77819937-77819956 | None:intergenic | 55.0% | |
| ! | CGACAAGTTGACGACCGTCT+TGG | + | chr5.2:77819732-77819751 | None:intergenic | 55.0% |
| ! | GCAATGGCTGGTCCTGGAAT+TGG | - | chr5.2:77819973-77819992 | MS.gene030080:CDS | 55.0% |
| ! | GTTTTCTTACCCTTCGCCGG+TGG | + | chr5.2:77819823-77819842 | None:intergenic | 55.0% |
| AAGGTCCACCGCAGATGGTG+AGG | - | chr5.2:77820208-77820227 | MS.gene030080:CDS | 60.0% | |
| AATTGCGGAGGAGGACCACC+TGG | + | chr5.2:77820276-77820295 | None:intergenic | 60.0% | |
| ACACCACTTCCAGGAGGAGG+AGG | + | chr5.2:77820420-77820439 | None:intergenic | 60.0% | |
| ACCATCTGACCAGGAGGAGG+TGG | + | chr5.2:77820339-77820358 | None:intergenic | 60.0% | |
| ACCGGAACACCACTTCCAGG+AGG | + | chr5.2:77820426-77820445 | None:intergenic | 60.0% | |
| AGGTCCACCGCAGATGGTGA+GGG | - | chr5.2:77820209-77820228 | MS.gene030080:CDS | 60.0% | |
| ATCTGCGGTGGACCTTGTCC+AGG | + | chr5.2:77820204-77820223 | None:intergenic | 60.0% | |
| ATGCCTCCTCCTCCTGGAAG+TGG | - | chr5.2:77820414-77820433 | MS.gene030080:CDS | 60.0% | |
| ATTCCAGGACGAGGAGGAGC+AGG | + | chr5.2:77820372-77820391 | None:intergenic | 60.0% | |
| CCATCTGACCAGGAGGAGGT+GGG | + | chr5.2:77820338-77820357 | None:intergenic | 60.0% | |
| CCTGCAGCACGACCAATTCC+AGG | + | chr5.2:77819988-77820007 | None:intergenic | 60.0% | |
| CCTGGAATTGGTCGTGCTGC+AGG | - | chr5.2:77819985-77820004 | MS.gene030080:CDS | 60.0% | |
| CGAACAGGACCAGCAAGACC+AGG | + | chr5.2:77820048-77820067 | None:intergenic | 60.0% | |
| CTATGCCGCCGGGGCAATTT+GGG | - | chr5.2:77820244-77820263 | MS.gene030080:CDS | 60.0% | |
| CTCTGCCCATACTGAGGAGG+TGG | + | chr5.2:77820306-77820325 | None:intergenic | 60.0% | |
| GAACCAAACCGAGTGTGCGG+CGG | + | chr5.2:77819867-77819886 | None:intergenic | 60.0% | |
| GAACGAGATTCCTCCGGTGG+TGG | + | chr5.2:77819934-77819953 | None:intergenic | 60.0% | |
| GCTGGTCCTGTTCGTGGTGT+AGG | - | chr5.2:77820054-77820073 | MS.gene030080:CDS | 60.0% | |
| GGAACACCACTTCCAGGAGG+AGG | + | chr5.2:77820423-77820442 | None:intergenic | 60.0% | |
| GGACCTTGTCCAGGATGTCC+AGG | + | chr5.2:77820195-77820214 | None:intergenic | 60.0% | |
| GGCCGAGGTGGACCATAAAC+CGG | + | chr5.2:77820444-77820463 | None:intergenic | 60.0% | |
| GGCTGCATCATACCAGGAGC+AGG | + | chr5.2:77820084-77820103 | None:intergenic | 60.0% | |
| GGGCAATTTGGGCAGAGACC+AGG | - | chr5.2:77820255-77820274 | MS.gene030080:CDS | 60.0% | |
| GGTCCACCTACACCACGAAC+AGG | + | chr5.2:77820063-77820082 | None:intergenic | 60.0% | |
| GGTCCTGTTCGTGGTGTAGG+TGG | - | chr5.2:77820057-77820076 | MS.gene030080:CDS | 60.0% | |
| GGTCTCTGCCCAAATTGCCC+CGG | + | chr5.2:77820255-77820274 | None:intergenic | 60.0% | |
| GGTCTCTGCCCATACTGAGG+AGG | + | chr5.2:77820309-77820328 | None:intergenic | 60.0% | |
| GGTCTTGCTGGTCCTGTTCG+TGG | - | chr5.2:77820048-77820067 | MS.gene030080:CDS | 60.0% | |
| GGTGGTCCTCCTCCGCAATT+TGG | - | chr5.2:77820276-77820295 | MS.gene030080:CDS | 60.0% | |
| GTTATGCGTCCGCCTGGTCA+AGG | - | chr5.2:77820147-77820166 | MS.gene030080:CDS | 60.0% | |
| GTTTATGGTCCACCTCGGCC+TGG | - | chr5.2:77820444-77820463 | MS.gene030080:CDS | 60.0% | |
| TGACCAGGCGGACGCATAAC+CGG | + | chr5.2:77820147-77820166 | None:intergenic | 60.0% | |
| TGACCAGGTGGACCTTGACC+AGG | + | chr5.2:77820162-77820181 | None:intergenic | 60.0% | |
| TGGACAAGGTCCACCGCAGA+TGG | - | chr5.2:77820203-77820222 | MS.gene030080:CDS | 60.0% | |
| ! | ACTGGCGGACGCGAAATCTG+CGG | + | chr5.2:77820105-77820124 | None:intergenic | 60.0% |
| ! | TTTGGTGGAGGAGGCATGCC+AGG | + | chr5.2:77820465-77820484 | None:intergenic | 60.0% |
| !! | CAAGCTCAGCCTGGTCTTGC+TGG | - | chr5.2:77820036-77820055 | MS.gene030080:CDS | 60.0% |
| !! | TAGAGGTATTCCTCCGGCGC+CGG | - | chr5.2:77820008-77820027 | MS.gene030080:CDS | 60.0% |
| AATTGCCCCGGCGGCATAGG+AGG | + | chr5.2:77820243-77820262 | None:intergenic | 65.0% | |
| AGACCGCCGCACACTCGGTT+TGG | - | chr5.2:77819861-77819880 | MS.gene030080:CDS | 65.0% | |
| CCAAATTGCCCCGGCGGCAT+AGG | + | chr5.2:77820246-77820265 | None:intergenic | 65.0% | |
| CCAGGTGGACCTTGACCAGG+CGG | + | chr5.2:77820159-77820178 | None:intergenic | 65.0% | |
| CCCACCTCCTCCTGGTCAGA+TGG | - | chr5.2:77820335-77820354 | MS.gene030080:CDS | 65.0% | |
| CCTATGCCGCCGGGGCAATT+TGG | - | chr5.2:77820243-77820262 | MS.gene030080:CDS | 65.0% | |
| CCTGGAATGCCTCCTCCTCC+TGG | - | chr5.2:77820408-77820427 | MS.gene030080:CDS | 65.0% | |
| CGAGTGTGCGGCGGTCTTCA+CGG | + | chr5.2:77819858-77819877 | None:intergenic | 65.0% | |
| CGTGAAGACCGCCGCACACT+CGG | - | chr5.2:77819856-77819875 | MS.gene030080:CDS | 65.0% | |
| CTCTGCCCAAATTGCCCCGG+CGG | + | chr5.2:77820252-77820271 | None:intergenic | 65.0% | |
| GGCTGCATTCCAGGACGAGG+AGG | + | chr5.2:77820378-77820397 | None:intergenic | 65.0% | |
| GGTCCACCGCAGATGGTGAG+GGG | - | chr5.2:77820210-77820229 | MS.gene030080:CDS | 65.0% | |
| GGTGGACCCCTCACCATCTG+CGG | + | chr5.2:77820219-77820238 | None:intergenic | 65.0% | |
| GGTGGCTGCATTCCAGGACG+AGG | + | chr5.2:77820381-77820400 | None:intergenic | 65.0% | |
| GGTGTAGGTGGACCTGCTCC+TGG | - | chr5.2:77820069-77820088 | MS.gene030080:CDS | 65.0% | |
| TGAAGGTCCTCCACCACCGG+AGG | - | chr5.2:77819921-77819940 | MS.gene030080:CDS | 65.0% | |
| ! | CGAGATTCCTCCGGTGGTGG+AGG | + | chr5.2:77819931-77819950 | None:intergenic | 65.0% |
| ! | CGCATAACCGGAGCACCACC+AGG | + | chr5.2:77820135-77820154 | None:intergenic | 65.0% |
| ! | GCTGCTGCAATGGCTGGTCC+TGG | - | chr5.2:77819967-77819986 | MS.gene030080:CDS | 65.0% |
| ! | GCTTGAATAACCGGCGCCGG+AGG | + | chr5.2:77820021-77820040 | None:intergenic | 65.0% |
| !! | CCAGGAGGAGGAGGCATTCC+AGG | + | chr5.2:77820411-77820430 | None:intergenic | 65.0% |
| !! | GGAGGAGGCATTCCAGGACG+AGG | + | chr5.2:77820405-77820424 | None:intergenic | 65.0% |
| !! | GGAGGCATTCCAGGACGAGG+CGG | + | chr5.2:77820402-77820421 | None:intergenic | 65.0% |
| ATGCAGCCACCGCCTCGTCC+TGG | - | chr5.2:77820390-77820409 | MS.gene030080:CDS | 70.0% | |
| CCAGGACGAGGAGGAGCAGG+AGG | + | chr5.2:77820369-77820388 | None:intergenic | 70.0% | |
| CCAGGAGGAGGTGGGCCCAT+AGG | + | chr5.2:77820330-77820349 | None:intergenic | 70.0% | |
| CCGCCTGGTCAAGGTCCACC+TGG | - | chr5.2:77820156-77820175 | MS.gene030080:CDS | 70.0% | |
| CCTATGGGCCCACCTCCTCC+TGG | - | chr5.2:77820327-77820346 | MS.gene030080:CDS | 70.0% | |
| CCTCCTGCTCCTCCTCGTCC+TGG | - | chr5.2:77820366-77820385 | MS.gene030080:CDS | 70.0% | |
| CGAGGCGGTGGCTGCATTCC+AGG | + | chr5.2:77820387-77820406 | None:intergenic | 70.0% | |
| GCGGTCTTCACGGTCGCCGT+CGG | + | chr5.2:77819848-77819867 | None:intergenic | 70.0% | |
| GCTCCGGTTATGCGTCCGCC+TGG | - | chr5.2:77820141-77820160 | MS.gene030080:CDS | 70.0% | |
| GGACCCCTCACCATCTGCGG+TGG | + | chr5.2:77820216-77820235 | None:intergenic | 70.0% | |
| GGCATTCCAGGACGAGGCGG+TGG | + | chr5.2:77820399-77820418 | None:intergenic | 70.0% | |
| GTCTTCACGGTCGCCGTCGG+TGG | + | chr5.2:77819845-77819864 | None:intergenic | 70.0% | |
| TCCACCGCCTCCTATGCCGC+CGG | - | chr5.2:77820233-77820252 | MS.gene030080:CDS | 70.0% | |
| CACCGCCTCCTATGCCGCCG+GGG | - | chr5.2:77820235-77820254 | MS.gene030080:CDS | 75.0% | |
| CCACCGCCTCCTATGCCGCC+GGG | - | chr5.2:77820234-77820253 | MS.gene030080:CDS | 75.0% | |
| TGCCCCGGCGGCATAGGAGG+CGG | + | chr5.2:77820240-77820259 | None:intergenic | 75.0% | |
| ! | GGAGGAGGCATGCCAGGCCG+AGG | + | chr5.2:77820459-77820478 | None:intergenic | 75.0% |
| ! | GGAGGCATGCCAGGCCGAGG+TGG | + | chr5.2:77820456-77820475 | None:intergenic | 75.0% |
| ! | CCCGGCGGCATAGGAGGCGG+TGG | + | chr5.2:77820237-77820256 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 77819667 | 77820512 | 77819667 | ID=MS.gene030080 |
| chr5.2 | mRNA | 77819667 | 77820512 | 77819667 | ID=MS.gene030080.t1;Parent=MS.gene030080 |
| chr5.2 | exon | 77819667 | 77820512 | 77819667 | ID=MS.gene030080.t1.exon1;Parent=MS.gene030080.t1 |
| chr5.2 | CDS | 77819667 | 77820512 | 77819667 | ID=cds.MS.gene030080.t1;Parent=MS.gene030080.t1 |
| Gene Sequence |
| Protein sequence |
