AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030437

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030437.t1 MTR_8g096950 97.173 283 7 1 1 283 1 282 0.0 562
MS.gene030437.t1 MTR_5g010620 74.113 282 58 2 1 282 1 267 7.14e-149 417
MS.gene030437.t1 MTR_5g010620 74.113 282 58 2 1 282 33 299 1.13e-148 418
MS.gene030437.t1 MTR_3g110015 88.235 85 9 1 1 84 1 85 1.69e-44 146
MS.gene030437.t1 MTR_3g109978 88.235 85 9 1 1 84 92 176 7.18e-44 147
MS.gene030437.t1 MTR_7g055620 61.194 134 13 2 1 134 166 260 2.82e-42 149
MS.gene030437.t1 MTR_0411s0050 83.929 56 9 0 88 143 15 70 5.57e-27 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030437.t1 AT4G20330 66.312 282 92 2 1 282 1 279 9.37e-124 355
MS.gene030437.t1 AT4G21010 58.363 281 109 5 1 280 1 274 2.81e-96 285

Find 64 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCCGTCGTATTCTACTTT+TGG 0.214350 4.4:+6608208 None:intergenic
TCCACCTTAATGTTTGCTTT+GGG 0.248514 4.4:+6607206 None:intergenic
ATCCACCTTAATGTTTGCTT+TGG 0.267923 4.4:+6607205 None:intergenic
GCAGCCACCACCGGAGTATT+AGG 0.268237 4.4:+6609257 None:intergenic
CAGGAGTTGTTGTTTACTTT+AGG 0.277978 4.4:+6606949 None:intergenic
TGAAAGCTGCAGGGCAGATT+TGG 0.288630 4.4:-6607277 MS.gene030437:CDS
ATGTTTGCTTTGGGGTCATT+CGG 0.320738 4.4:+6607215 None:intergenic
CTCTTTGCAGTGTTGGTAGC+AGG 0.337273 4.4:+6607095 None:intergenic
CATGCTTCATTTATTTGCTC+TGG 0.343949 4.4:+6608283 None:intergenic
CAATGTGATGGAAGACTTGC+AGG 0.356725 4.4:-6607979 MS.gene030437:intron
TTCAGCAGATTAATAATATA+CGG 0.357327 4.4:-6609169 MS.gene030437:CDS
ATTGGTCAGCTTGGTTCTCT+TGG 0.364216 4.4:+6606998 None:intergenic
CGCTTCATCTGAGCACCAAC+GGG 0.368774 4.4:+6609140 None:intergenic
CATTGGGGTAAGCATCCTTT+AGG 0.372124 4.4:+6607997 None:intergenic
CTTAGACTTGGACTTGGACT+TGG 0.379977 4.4:+6607034 None:intergenic
TGTTTGCTTTGGGGTCATTC+GGG 0.391698 4.4:+6607216 None:intergenic
TGCAAGTCTTCCATCACATT+GGG 0.401716 4.4:+6607981 None:intergenic
GCTGACCAATTCCCATCTTC+CGG 0.404549 4.4:-6606985 MS.gene030437:CDS
TGACCCCAAAGCAAACATTA+AGG 0.415737 4.4:-6607210 MS.gene030437:CDS
TTGTAGGCTTTGAAAGCTGC+AGG 0.415846 4.4:-6607287 MS.gene030437:intron
ATGACCTAAAGCAGCTGTTT+CGG 0.418120 4.4:-6607181 MS.gene030437:CDS
GAGAAGGATCTTCAAAAGAA+TGG 0.418846 4.4:-6607125 MS.gene030437:CDS
ATAGGCAAAGTATGGTCTTA+AGG 0.421161 4.4:-6608078 MS.gene030437:intron
AAGCTCCGGAAGATGGGAAT+TGG 0.433158 4.4:+6606980 None:intergenic
CTTGGACTTGGACTTGGACT+TGG 0.442430 4.4:+6607040 None:intergenic
TACTCCGAAACAGCTGCTTT+AGG 0.444378 4.4:+6607177 None:intergenic
AGCATTGCGTCGAGCAAAGT+TGG 0.452004 4.4:-6609290 MS.gene030437:CDS
AGTCCTCCTCTTTGCAGTGT+TGG 0.455410 4.4:+6607088 None:intergenic
GATTTCATTCTTCTTAGACT+TGG 0.459783 4.4:+6607022 None:intergenic
CCACCTTAATGTTTGCTTTG+GGG 0.471247 4.4:+6607207 None:intergenic
GCTGTCCAACTTTGATTCAC+AGG 0.488075 4.4:-6607252 MS.gene030437:CDS
AGGACTGCAGCACAAATTGA+TGG 0.492183 4.4:-6607071 MS.gene030437:CDS
GATGCATTTGCAGCCACCAC+CGG 0.494981 4.4:+6609248 None:intergenic
GCTGCAAATGCATCAGCAAA+TGG 0.504031 4.4:-6609239 MS.gene030437:CDS
AAGCATGCTATGTTGATATG+AGG 0.505702 4.4:-6608267 MS.gene030437:CDS
GTCGTCCTGTGAATCAAAGT+TGG 0.513690 4.4:+6607247 None:intergenic
ATTCTTCTTAGACTTGGACT+TGG 0.515148 4.4:+6607028 None:intergenic
CTGCAAGTCTTCCATCACAT+TGG 0.523283 4.4:+6607980 None:intergenic
CTCTGCAAGAGCAACTAGAT+AGG 0.523289 4.4:-6609352 MS.gene030437:CDS
AAGTAGAATACGACGGGCAA+CGG 0.531226 4.4:-6608204 MS.gene030437:CDS
CGGGCAACGGTTCTCTTACA+AGG 0.541030 4.4:-6608191 MS.gene030437:intron
AAGATGGGAATTGGTCAGCT+TGG 0.557060 4.4:+6606989 None:intergenic
TGTTATTGATCTATTGCTTG+AGG 0.558507 4.4:-6609117 MS.gene030437:intron
ACCCAAAAGTAGAATACGAC+GGG 0.561755 4.4:-6608210 MS.gene030437:CDS
GGATGCTTACCCCAATGTGA+TGG 0.574607 4.4:-6607991 MS.gene030437:CDS
AAAACCTAATACTCCGGTGG+TGG 0.582600 4.4:-6609261 MS.gene030437:CDS
TAGCAGAAAACCTAATACTC+CGG 0.589094 4.4:-6609267 MS.gene030437:CDS
ACGCTTCATCTGAGCACCAA+CGG 0.595575 4.4:+6609139 None:intergenic
AGCTTCTTCAACTTATACGT+AGG 0.600973 4.4:-6608046 MS.gene030437:CDS
TGATATGATTGATATAGAGA+AGG 0.617718 4.4:-6607141 MS.gene030437:CDS
CCCCAAAGCAAACATTAAGG+TGG 0.623815 4.4:-6607207 MS.gene030437:CDS
AATTCTCAAGTGACACTGAG+AGG 0.626331 4.4:-6609193 MS.gene030437:CDS
AGCATGCTATGTTGATATGA+GGG 0.636991 4.4:-6608266 MS.gene030437:CDS
TGTAGGCTTTGAAAGCTGCA+GGG 0.643501 4.4:-6607286 MS.gene030437:intron
CTACCAACACTGCAAAGAGG+AGG 0.656479 4.4:-6607091 MS.gene030437:CDS
CTGCTACCAACACTGCAAAG+AGG 0.665956 4.4:-6607094 MS.gene030437:CDS
GCTTCATCTGAGCACCAACG+GGG 0.666699 4.4:+6609141 None:intergenic
ACTTATACGTAGGTATCCAG+AGG 0.677982 4.4:-6608036 MS.gene030437:CDS
CTTATACGTAGGTATCCAGA+GGG 0.688413 4.4:-6608035 MS.gene030437:CDS
AACCCAAAAGTAGAATACGA+CGG 0.689064 4.4:-6608211 MS.gene030437:CDS
GCAAGTCTTCCATCACATTG+GGG 0.693489 4.4:+6607982 None:intergenic
CTTCATCTGAGCACCAACGG+GGG 0.696908 4.4:+6609142 None:intergenic
CAGAAAACCTAATACTCCGG+TGG 0.697637 4.4:-6609264 MS.gene030437:CDS
TCTATATCAATCATATCACG+AGG 0.742182 4.4:+6607146 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACCTTAATTTATAATAA+TGG + chr4.4:6608650-6608669 None:intergenic 10.0%
!! AATAAACAAAACAAATGAAT+AGG + chr4.4:6608781-6608800 None:intergenic 15.0%
!! ATTGAAACTAATAATATGTT+TGG - chr4.4:6607442-6607461 MS.gene030437:intron 15.0%
!! TTAATTTATAATAATGGCAA+CGG + chr4.4:6608644-6608663 None:intergenic 15.0%
!!! TTGTTTGTTTTTTCATTTAT+TGG - chr4.4:6607257-6607276 MS.gene030437:CDS 15.0%
!! AAATAAGTTCTCAATATGTT+AGG + chr4.4:6607584-6607603 None:intergenic 20.0%
!! AATAAGTTCTCAATATGTTA+GGG + chr4.4:6607583-6607602 None:intergenic 20.0%
!! ACTTAAATAGATGACATAAA+GGG - chr4.4:6607662-6607681 MS.gene030437:intron 20.0%
!! ATAAATTAAGGTTAATACTG+AGG - chr4.4:6608655-6608674 MS.gene030437:intron 20.0%
!! GTTGCCATTATTATAAATTA+AGG - chr4.4:6608643-6608662 MS.gene030437:intron 20.0%
!! TTAATGTTTGTCTTGAAATA+TGG - chr4.4:6608878-6608897 MS.gene030437:intron 20.0%
!! TTCAGCAGATTAATAATATA+CGG - chr4.4:6607149-6607168 MS.gene030437:CDS 20.0%
!!! AAGAAGATCAAATGTTTTAT+GGG - chr4.4:6608543-6608562 MS.gene030437:intron 20.0%
!!! GTTATTTGTTTTTTGTCTAT+AGG - chr4.4:6608222-6608241 MS.gene030437:CDS 20.0%
!!! TATTAGTTTCAATTTGCAAT+TGG + chr4.4:6607435-6607454 None:intergenic 20.0%
!!! TCATAATGATATCTTTTTGT+AGG - chr4.4:6609015-6609034 MS.gene030437:intron 20.0%
! AAACTAATAATATGTTTGGC+TGG - chr4.4:6607446-6607465 MS.gene030437:intron 25.0%
! AACATTTGATCTTCTTCAAA+AGG + chr4.4:6608539-6608558 None:intergenic 25.0%
! AATGGAAGAAATTCAAAAAC+TGG - chr4.4:6607097-6607116 MS.gene030437:CDS 25.0%
! ACATTTGATCTTCTTCAAAA+GGG + chr4.4:6608538-6608557 None:intergenic 25.0%
! ATAATAACATTGCACATTAG+TGG - chr4.4:6608570-6608589 MS.gene030437:intron 25.0%
! ATACTCTTAATCAATGTTCA+CGG + chr4.4:6607776-6607795 None:intergenic 25.0%
! ATGGAAATAGAGATTATAGA+TGG - chr4.4:6608897-6608916 MS.gene030437:intron 25.0%
! GACTTAAATAGATGACATAA+AGG - chr4.4:6607661-6607680 MS.gene030437:intron 25.0%
! GTCAAAATCTTGTATATAGT+TGG - chr4.4:6608973-6608992 MS.gene030437:intron 25.0%
! TAATAACATTGCACATTAGT+GGG - chr4.4:6608571-6608590 MS.gene030437:intron 25.0%
! TACATATCACTTATGTAGAA+TGG - chr4.4:6607723-6607742 MS.gene030437:intron 25.0%
! TGATATGATTGATATAGAGA+AGG - chr4.4:6609177-6609196 MS.gene030437:CDS 25.0%
! TTTCATTTATTGGAAGTTTC+TGG - chr4.4:6607267-6607286 MS.gene030437:CDS 25.0%
!! ATGAAGAAGTTATTTGCTAA+AGG + chr4.4:6608200-6608219 None:intergenic 25.0%
!! GAAGAAGATCAAATGTTTTA+TGG - chr4.4:6608542-6608561 MS.gene030437:intron 25.0%
AAAAACATCACCTATCACTA+AGG + chr4.4:6608940-6608959 None:intergenic 30.0%
AATTCTCATTTCTCACAGAT+TGG - chr4.4:6608461-6608480 MS.gene030437:intron 30.0%
ACCAAAACACCAAATCAATA+TGG + chr4.4:6607987-6608006 None:intergenic 30.0%
ACCAATGAAATTCCACAATT+AGG - chr4.4:6607945-6607964 MS.gene030437:intron 30.0%
AGATTATAGATGGAACTATC+AGG - chr4.4:6608907-6608926 MS.gene030437:intron 30.0%
CATCAAACTCCAAAATATCT+TGG + chr4.4:6607855-6607874 None:intergenic 30.0%
GATTTCATTCTTCTTAGACT+TGG + chr4.4:6609299-6609318 None:intergenic 30.0%
GTTTGCAAATTAAGCATACA+AGG - chr4.4:6607629-6607648 MS.gene030437:intron 30.0%
TAACCTCAAACTTAACAGAT+GGG + chr4.4:6607387-6607406 None:intergenic 30.0%
TCCTAATTGTGGAATTTCAT+TGG + chr4.4:6607949-6607968 None:intergenic 30.0%
TCTATATCAATCATATCACG+AGG + chr4.4:6609175-6609194 None:intergenic 30.0%
TGTTATTGATCTATTGCTTG+AGG - chr4.4:6607201-6607220 MS.gene030437:CDS 30.0%
TTAACCTCAAACTTAACAGA+TGG + chr4.4:6607388-6607407 None:intergenic 30.0%
TTACAAAATCTTGCTCCTTA+AGG - chr4.4:6608704-6608723 MS.gene030437:intron 30.0%
! AGTCATCTTCCAAGATATTT+TGG - chr4.4:6607843-6607862 MS.gene030437:intron 30.0%
! CTATTGCTTGAGGTAATTTT+TGG - chr4.4:6607211-6607230 MS.gene030437:CDS 30.0%
! CTCTTACAAGGTAACTTTTA+CGG - chr4.4:6608139-6608158 MS.gene030437:intron 30.0%
! TAAGGAGCAAGATTTTGTAA+TGG + chr4.4:6608704-6608723 None:intergenic 30.0%
! TCGTCAAAACCATATTGATT+TGG - chr4.4:6607975-6607994 MS.gene030437:intron 30.0%
! TCTTACAAGGTAACTTTTAC+GGG - chr4.4:6608140-6608159 MS.gene030437:intron 30.0%
! TTTTGTCTATAGGCAAAGTA+TGG - chr4.4:6608232-6608251 MS.gene030437:CDS 30.0%
!!! ACCATATTGATTTGGTGTTT+TGG - chr4.4:6607983-6608002 MS.gene030437:CDS 30.0%
!!! CAAGATATTTTGGAGTTTGA+TGG - chr4.4:6607853-6607872 MS.gene030437:intron 30.0%
!!! TAGTTGGCTTTTCAATGAAT+AGG - chr4.4:6608989-6609008 MS.gene030437:intron 30.0%
AACCCAAAAGTAGAATACGA+CGG - chr4.4:6608107-6608126 MS.gene030437:intron 35.0%
AAGCATGCTATGTTGATATG+AGG - chr4.4:6608051-6608070 MS.gene030437:CDS 35.0%
AAGTTCTCAATATGTTAGGG+TGG + chr4.4:6607580-6607599 None:intergenic 35.0%
ACATGATACCGAGACATTAA+GGG - chr4.4:6608842-6608861 MS.gene030437:intron 35.0%
ACATTTCTTACAGCACCTTA+AGG + chr4.4:6608722-6608741 None:intergenic 35.0%
AGCATGCTATGTTGATATGA+GGG - chr4.4:6608052-6608071 MS.gene030437:CDS 35.0%
AGCTTCTTCAACTTATACGT+AGG - chr4.4:6608272-6608291 MS.gene030437:CDS 35.0%
AGGTAGAATGACTTCTGTTA+GGG - chr4.4:6608359-6608378 MS.gene030437:intron 35.0%
AGTTCTCAATATGTTAGGGT+GGG + chr4.4:6607579-6607598 None:intergenic 35.0%
ATCACTTATGTAGAATGGTG+TGG - chr4.4:6607728-6607747 MS.gene030437:intron 35.0%
ATCCACCTTAATGTTTGCTT+TGG + chr4.4:6609116-6609135 None:intergenic 35.0%
ATGCATCTTGTAGATCGTTA+TGG + chr4.4:6607806-6607825 None:intergenic 35.0%
ATTCTTCTTAGACTTGGACT+TGG + chr4.4:6609293-6609312 None:intergenic 35.0%
CAAATTAAGCATACAAGGTC+AGG - chr4.4:6607634-6607653 MS.gene030437:intron 35.0%
CATGCTTCATTTATTTGCTC+TGG + chr4.4:6608038-6608057 None:intergenic 35.0%
CATGTAAACGTCAATGAGAA+TGG + chr4.4:6608827-6608846 None:intergenic 35.0%
GAATAGGAAGTGAATGAACA+AGG + chr4.4:6608765-6608784 None:intergenic 35.0%
GACGAATCAATTCCTAATTG+TGG + chr4.4:6607960-6607979 None:intergenic 35.0%
GAGAAGGATCTTCAAAAGAA+TGG - chr4.4:6609193-6609212 MS.gene030437:CDS 35.0%
GTAAGCTATCTTAAGTAGCA+TGG + chr4.4:6607927-6607946 None:intergenic 35.0%
TAACGATCTACAAGATGCAT+AGG - chr4.4:6607806-6607825 MS.gene030437:intron 35.0%
TACATGATACCGAGACATTA+AGG - chr4.4:6608841-6608860 MS.gene030437:intron 35.0%
TAGCAGAAAACCTAATACTC+CGG - chr4.4:6607051-6607070 MS.gene030437:CDS 35.0%
TCCACCTTAATGTTTGCTTT+GGG + chr4.4:6609115-6609134 None:intergenic 35.0%
! ATAGGCAAAGTATGGTCTTA+AGG - chr4.4:6608240-6608259 MS.gene030437:CDS 35.0%
! CATTTATTGGAAGTTTCTGG+TGG - chr4.4:6607270-6607289 MS.gene030437:CDS 35.0%
! GAGTTTGATGGATGTTATGT+TGG - chr4.4:6607865-6607884 MS.gene030437:intron 35.0%
!! AAGATGTTTTTGAGAGTCTG+AGG - chr4.4:6608081-6608100 MS.gene030437:intron 35.0%
!! TTAAGGTGCTGTAAGAAATG+TGG - chr4.4:6608721-6608740 MS.gene030437:intron 35.0%
!! TTTAGGTTCTGAAAAAGCTC+CGG + chr4.4:6609355-6609374 None:intergenic 35.0%
AAGCCCATCTGTTAAGTTTG+AGG - chr4.4:6607381-6607400 MS.gene030437:intron 40.0%
AAGTGAATGAACAAGGTAGC+AGG + chr4.4:6608758-6608777 None:intergenic 40.0%
AATTCTCAAGTGACACTGAG+AGG - chr4.4:6607125-6607144 MS.gene030437:CDS 40.0%
ACCCAAAAGTAGAATACGAC+GGG - chr4.4:6608108-6608127 MS.gene030437:intron 40.0%
ACTTATACGTAGGTATCCAG+AGG - chr4.4:6608282-6608301 MS.gene030437:CDS 40.0%
AGGTCATATGCCTTAGTGAT+AGG - chr4.4:6608927-6608946 MS.gene030437:intron 40.0%
AGTTTGGCTAAATCACTGTG+GGG - chr4.4:6607475-6607494 MS.gene030437:intron 40.0%
ATGAACAAGGTAGCAGGAAA+AGG + chr4.4:6608752-6608771 None:intergenic 40.0%
ATGACCTAAAGCAGCTGTTT+CGG - chr4.4:6609137-6609156 MS.gene030437:CDS 40.0%
CAGGTAGAATGACTTCTGTT+AGG - chr4.4:6608358-6608377 MS.gene030437:intron 40.0%
CCACCTTAATGTTTGCTTTG+GGG + chr4.4:6609114-6609133 None:intergenic 40.0%
CCTTTAGGTCAAAAACAGCA+AGG + chr4.4:6608309-6608328 None:intergenic 40.0%
CTTATACGTAGGTATCCAGA+GGG - chr4.4:6608283-6608302 MS.gene030437:CDS 40.0%
GAAAAAACGTCGTCAGGAAA+TGG + chr4.4:6608406-6608425 None:intergenic 40.0%
GAGTTTGGCTAAATCACTGT+GGG - chr4.4:6607474-6607493 MS.gene030437:intron 40.0%
GTGATATGTAAACGAACCTG+TGG + chr4.4:6607713-6607732 None:intergenic 40.0%
TATGTAAACGAACCTGTGGT+AGG + chr4.4:6607709-6607728 None:intergenic 40.0%
TCACTCTTCCCTTAATGTCT+CGG + chr4.4:6608853-6608872 None:intergenic 40.0%
TGACCCCAAAGCAAACATTA+AGG - chr4.4:6609108-6609127 MS.gene030437:intron 40.0%
TGAGAATGGAAGCAAAGAGA+AGG + chr4.4:6608813-6608832 None:intergenic 40.0%
TGAGTTTGGCTAAATCACTG+TGG - chr4.4:6607473-6607492 MS.gene030437:intron 40.0%
TGCAAGTCTTCCATCACATT+GGG + chr4.4:6608340-6608359 None:intergenic 40.0%
! TTAACAGATGGGCTTCTCAA+AGG + chr4.4:6607376-6607395 None:intergenic 40.0%
!! ATGTTTGCTTTGGGGTCATT+CGG + chr4.4:6609106-6609125 None:intergenic 40.0%
!!! CCTTGCTGTTTTTGACCTAA+AGG - chr4.4:6608306-6608325 MS.gene030437:intron 40.0%
AAAACCTAATACTCCGGTGG+TGG - chr4.4:6607057-6607076 MS.gene030437:CDS 45.0%
AAACGAACCTGTGGTAGGAT+TGG + chr4.4:6607704-6607723 None:intergenic 45.0%
AACGAACCTGTGGTAGGATT+GGG + chr4.4:6607703-6607722 None:intergenic 45.0%
AAGATGGGAATTGGTCAGCT+TGG + chr4.4:6609332-6609351 None:intergenic 45.0%
AAGTAGAATACGACGGGCAA+CGG - chr4.4:6608114-6608133 MS.gene030437:intron 45.0%
AGGACTGCAGCACAAATTGA+TGG - chr4.4:6609247-6609266 MS.gene030437:CDS 45.0%
CAGAAAACCTAATACTCCGG+TGG - chr4.4:6607054-6607073 MS.gene030437:CDS 45.0%
CATTGGGGTAAGCATCCTTT+AGG + chr4.4:6608324-6608343 None:intergenic 45.0%
CCCCAAAGCAAACATTAAGG+TGG - chr4.4:6609111-6609130 MS.gene030437:intron 45.0%
CTCTGCAAGAGCAACTAGAT+AGG - chr4.4:6606966-6606985 MS.gene030437:CDS 45.0%
CTGAAAAAGCTCCGGAAGAT+GGG + chr4.4:6609347-6609366 None:intergenic 45.0%
CTGCAAGTCTTCCATCACAT+TGG + chr4.4:6608341-6608360 None:intergenic 45.0%
CTTAGACTTGGACTTGGACT+TGG + chr4.4:6609287-6609306 None:intergenic 45.0%
GCAAGTCTTCCATCACATTG+GGG + chr4.4:6608339-6608358 None:intergenic 45.0%
GCTACTGAAAAAACGTCGTC+AGG + chr4.4:6608412-6608431 None:intergenic 45.0%
GCTGCAAATGCATCAGCAAA+TGG - chr4.4:6607079-6607098 MS.gene030437:CDS 45.0%
GCTGTCCAACTTTGATTCAC+AGG - chr4.4:6609066-6609085 MS.gene030437:intron 45.0%
GTCGTCCTGTGAATCAAAGT+TGG + chr4.4:6609074-6609093 None:intergenic 45.0%
TCAAATCCCAATCCTACCAC+AGG - chr4.4:6607694-6607713 MS.gene030437:intron 45.0%
TCTCAATATGTTAGGGTGGG+CGG + chr4.4:6607576-6607595 None:intergenic 45.0%
TCTGAAAAAGCTCCGGAAGA+TGG + chr4.4:6609348-6609367 None:intergenic 45.0%
! ATTGGTCAGCTTGGTTCTCT+TGG + chr4.4:6609323-6609342 None:intergenic 45.0%
! CAATGTGATGGAAGACTTGC+AGG - chr4.4:6608339-6608358 MS.gene030437:intron 45.0%
! TACTCCGAAACAGCTGCTTT+AGG + chr4.4:6609144-6609163 None:intergenic 45.0%
! TGCCCGTCGTATTCTACTTT+TGG + chr4.4:6608113-6608132 None:intergenic 45.0%
! TTTTCCCTCGTCTCATGCAT+CGG + chr4.4:6607312-6607331 None:intergenic 45.0%
!! ACGGTTTTAATGCCAAGGGT+TGG + chr4.4:6608625-6608644 None:intergenic 45.0%
!! CGGTTTTAATGCCAAGGGTT+GGG + chr4.4:6608624-6608643 None:intergenic 45.0%
!! GCCCGTCGTATTCTACTTTT+GGG + chr4.4:6608112-6608131 None:intergenic 45.0%
!! GGCAACGGTTTTAATGCCAA+GGG + chr4.4:6608629-6608648 None:intergenic 45.0%
!! TGGCAACGGTTTTAATGCCA+AGG + chr4.4:6608630-6608649 None:intergenic 45.0%
!! TGTAGGCTTTGAAAGCTGCA+GGG - chr4.4:6609032-6609051 MS.gene030437:intron 45.0%
!! TGTTTGCTTTGGGGTCATTC+GGG + chr4.4:6609105-6609124 None:intergenic 45.0%
!! TTGTAGGCTTTGAAAGCTGC+AGG - chr4.4:6609031-6609050 MS.gene030437:intron 45.0%
!!! CGACGTTTTTTCAGTAGCAG+TGG - chr4.4:6608414-6608433 MS.gene030437:intron 45.0%
!!! TTCCACTTTTTCCCAACCCT+TGG - chr4.4:6608610-6608629 MS.gene030437:intron 45.0%
AAGCTCCGGAAGATGGGAAT+TGG + chr4.4:6609341-6609360 None:intergenic 50.0%
AATATACGGAAAGCCCCCGT+TGG - chr4.4:6607163-6607182 MS.gene030437:CDS 50.0%
ACGCTTCATCTGAGCACCAA+CGG + chr4.4:6607182-6607201 None:intergenic 50.0%
AGCATTGCGTCGAGCAAAGT+TGG - chr4.4:6607028-6607047 MS.gene030437:CDS 50.0%
AGTCCTCCTCTTTGCAGTGT+TGG + chr4.4:6609233-6609252 None:intergenic 50.0%
CTACCAACACTGCAAAGAGG+AGG - chr4.4:6609227-6609246 MS.gene030437:CDS 50.0%
CTGCTACCAACACTGCAAAG+AGG - chr4.4:6609224-6609243 MS.gene030437:CDS 50.0%
CTTGGACTTGGACTTGGACT+TGG + chr4.4:6609281-6609300 None:intergenic 50.0%
GATTCCGATGCATGAGACGA+GGG - chr4.4:6607305-6607324 MS.gene030437:intron 50.0%
GCTGACCAATTCCCATCTTC+CGG - chr4.4:6609333-6609352 MS.gene030437:CDS 50.0%
GGATGCTTACCCCAATGTGA+TGG - chr4.4:6608327-6608346 MS.gene030437:intron 50.0%
GTTTGGCTGGACACTGAGTT+TGG - chr4.4:6607459-6607478 MS.gene030437:intron 50.0%
TCAAAAACAGCAAGGCCCTC+TGG + chr4.4:6608301-6608320 None:intergenic 50.0%
TGAAAGCTGCAGGGCAGATT+TGG - chr4.4:6609041-6609060 MS.gene030437:intron 50.0%
TGATTCCGATGCATGAGACG+AGG - chr4.4:6607304-6607323 MS.gene030437:intron 50.0%
TGCCAAGGGTTGGGAAAAAG+TGG + chr4.4:6608615-6608634 None:intergenic 50.0%
!! CTCTTTGCAGTGTTGGTAGC+AGG + chr4.4:6609226-6609245 None:intergenic 50.0%
CGCTTCATCTGAGCACCAAC+GGG + chr4.4:6607181-6607200 None:intergenic 55.0%
CGGGCAACGGTTCTCTTACA+AGG - chr4.4:6608127-6608146 MS.gene030437:intron 55.0%
CTTCATCTGAGCACCAACGG+GGG + chr4.4:6607179-6607198 None:intergenic 55.0%
GATGCATTTGCAGCCACCAC+CGG + chr4.4:6607073-6607092 None:intergenic 55.0%
GCTTCATCTGAGCACCAACG+GGG + chr4.4:6607180-6607199 None:intergenic 55.0%
! GCAGCCACCACCGGAGTATT+AGG + chr4.4:6607064-6607083 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 6606962 6609378 6606962 ID=MS.gene030437
chr4.4 mRNA 6606962 6609378 6606962 ID=MS.gene030437.t1;Parent=MS.gene030437
chr4.4 exon 6609118 6609378 6609118 ID=MS.gene030437.t1.exon1;Parent=MS.gene030437.t1
chr4.4 CDS 6609118 6609378 6609118 ID=cds.MS.gene030437.t1;Parent=MS.gene030437.t1
chr4.4 exon 6608192 6608323 6608192 ID=MS.gene030437.t1.exon2;Parent=MS.gene030437.t1
chr4.4 CDS 6608192 6608323 6608192 ID=cds.MS.gene030437.t1;Parent=MS.gene030437.t1
chr4.4 exon 6607980 6608096 6607980 ID=MS.gene030437.t1.exon3;Parent=MS.gene030437.t1
chr4.4 CDS 6607980 6608096 6607980 ID=cds.MS.gene030437.t1;Parent=MS.gene030437.t1
chr4.4 exon 6606962 6607303 6606962 ID=MS.gene030437.t1.exon4;Parent=MS.gene030437.t1
chr4.4 CDS 6606962 6607303 6606962 ID=cds.MS.gene030437.t1;Parent=MS.gene030437.t1
Gene Sequence

>MS.gene030437

ATGGCTCTGCAAGAGCAACTAGATAGGTTCAAGAAACAGCAAGAGAAGTGTCAATCGACACTCTCGAGCATTGCGTCGAGCAAAGTTGGTAGCAGAAAACCTAATACTCCGGTGGTGGCTGCAAATGCATCAGCAAATGGAAGAAATTCAAAAACTGGTGTTAAATTCTCAAGTGACACTGAGAGGCTTCAGCAGATTAATAATATACGGAAAGCCCCCGTTGGTGCTCAGATGAAGCGTGTTATTGATCTATTGCTTGAGGTAATTTTTGGTTTTCTCATTCAATTCAATTTTGTTGTTTGTTTTTTCATTTATTGGAAGTTTCTGGTGGTGTTATTGCAGTGATTCCGATGCATGAGACGAGGGAAAAAAAATGAATTTTATTAGAATATATACACTCATTTTACATATCCTTTGAGAAGCCCATCTGTTAAGTTTGAGGTTAATTGAGACACTATAGCTCAAAGTCACCAATTGCAAATTGAAACTAATAATATGTTTGGCTGGACACTGAGTTTGGCTAAATCACTGTGGGGCTGTGATTTTGTTGAAGCTTCAACGTGTAGCTTTTGCTGAAATCGCTGTTACGCACTGTGATTTCGTCAAACTCACCGCCCACCCTAACATATTGAGAACTTATTTTAAGAAGCAAAAACGTTTTTTTATTGTTTGCAAATTAAGCATACAAGGTCAGGTTATGACTTAAATAGATGACATAAAGGGTCAATTTGTTCAAATCCCAATCCTACCACAGGTTCGTTTACATATCACTTATGTAGAATGGTGTGGTATGTAGTTTGAAAATTGTATTCCGTGAACATTGATTAAGAGTATTTTTTTTCCATAACGATCTACAAGATGCATAGGTATGCTTTACTTGCAGTCATCTTCCAAGATATTTTGGAGTTTGATGGATGTTATGTTGGTTCTCTTAAACTGAGTTGAATTCTTATTTTGAAGAGCCATGCTACTTAAGATAGCTTACCAATGAAATTCCACAATTAGGAATTGATTCGTCAAAACCATATTGATTTGGTGTTTTGGTTTGCTGATAGACACGACAAGCTTTTACACCAGAGCAAATAAATGAAGCATGCTATGTTGATATGAGGGCTAACAAAGATGTTTTTGAGAGTCTGAGGAAAAACCCAAAAGTAGAATACGACGGGCAACGGTTCTCTTACAAGGTAACTTTTACGGGTTCATATATCTTAATACTTTTATATTTAAATACTCCTTTAGCAAATAACTTCTTCATCTGTTATTTGTTTTTTGTCTATAGGCAAAGTATGGTCTTAAGGAGAAAAGCGAGCTTCTTCAACTTATACGTAGGTATCCAGAGGGCCTTGCTGTTTTTGACCTAAAGGATGCTTACCCCAATGTGATGGAAGACTTGCAGGTAGAATGACTTCTGTTAGGGCTGTTTTCTTTTCTTTGAAGACCATTTCCTGACGACGTTTTTTCAGTAGCAGTGGCTGTTTTGTTCATAGATATATGTTAATTCTCATTTCTCACAGATTGGACTTTTGTCTAGATAATGTGTTTTGTAAGAAATATTAACTGAAACACTATACCCTTTTGAAGAAGATCAAATGTTTTATGGGTAATATAATAACATTGCACATTAGTGGGTTTTATAAAATCGTTTTTCCACTTTTTCCCAACCCTTGGCATTAAAACCGTTGCCATTATTATAAATTAAGGTTAATACTGAGGAAATTGAAACATCTTATAATTAGCCATTACAAAATCTTGCTCCTTAAGGTGCTGTAAGAAATGTGGTTCAACCTTTTCCTGCTACCTTGTTCATTCACTTCCTATTCATTTGTTTTGTTTATTTTATAAAGACCTTCTCTTTGCTTCCATTCTCATTGACGTTTACATGATACCGAGACATTAAGGGAAGAGTGATTTTTTTAATGTTTGTCTTGAAATATGGAAATAGAGATTATAGATGGAACTATCAGGTCATATGCCTTAGTGATAGGTGATGTTTTTGTAGAAGTGAAGAGTCAAAATCTTGTATATAGTTGGCTTTTCAATGAATAGGATCTCATAATGATATCTTTTTGTAGGCTTTGAAAGCTGCAGGGCAGATTTGGCTGCTGTCCAACTTTGATTCACAGGACGACATTGCATACCCGAATGACCCCAAAGCAAACATTAAGGTGGATGATGACCTAAAGCAGCTGTTTCGGAGTATTGAGTTACCTCGTGATATGATTGATATAGAGAAGGATCTTCAAAAGAATGGAATGAAGCCTGCTACCAACACTGCAAAGAGGAGGACTGCAGCACAAATTGATGGCGTTTCTTCCAAGTCCAAGTCCAAGTCCAAGTCTAAGAAGAATGAAATCACCAAGAGAACCAAGCTGACCAATTCCCATCTTCCGGAGCTTTTTCAGAACCTAAAGTAA
Protein sequence

>MS.gene030437.t1

MALQEQLDRFKKQQEKCQSTLSSIASSKVGSRKPNTPVVAANASANGRNSKTGVKFSSDTERLQQINNIRKAPVGAQMKRVIDLLLETRQAFTPEQINEACYVDMRANKDVFESLRKNPKVEYDGQRFSYKAKYGLKEKSELLQLIRRYPEGLAVFDLKDAYPNVMEDLQALKAAGQIWLLSNFDSQDDIAYPNDPKANIKVDDDLKQLFRSIELPRDMIDIEKDLQKNGMKPATNTAKRRTAAQIDGVSSKSKSKSKSKKNEITKRTKLTNSHLPELFQNLK