Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030715.t1 | XP_003630114.1 | 99.4 | 342 | 2 | 0 | 1 | 342 | 1 | 342 | 1.00E-189 | 672.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030715.t1 | Q9C5J9 | 77.0 | 348 | 65 | 7 | 2 | 342 | 3 | 342 | 9.6e-141 | 501.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030715.t1 | G7LBB0 | 99.4 | 342 | 2 | 0 | 1 | 342 | 1 | 342 | 7.2e-190 | 672.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030715 | MS.gene56256 | PPI |
| MS.gene51627 | MS.gene030715 | PPI |
| MS.gene030715 | MS.gene63514 | PPI |
| MS.gene009458 | MS.gene030715 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030715.t1 | MTR_8g091980 | 99.415 | 342 | 2 | 0 | 1 | 342 | 1 | 342 | 0.0 | 694 |
| MS.gene030715.t1 | MTR_8g091980 | 99.281 | 278 | 2 | 0 | 1 | 278 | 1 | 278 | 0.0 | 566 |
| MS.gene030715.t1 | MTR_8g092020 | 23.786 | 206 | 131 | 5 | 22 | 227 | 13 | 192 | 1.43e-12 | 66.2 |
| MS.gene030715.t1 | MTR_7g103070 | 28.369 | 141 | 76 | 3 | 23 | 162 | 18 | 134 | 2.75e-12 | 65.9 |
| MS.gene030715.t1 | MTR_1g029450 | 30.675 | 163 | 83 | 6 | 23 | 183 | 19 | 153 | 5.01e-12 | 65.1 |
| MS.gene030715.t1 | MTR_8g006970 | 26.286 | 175 | 96 | 5 | 17 | 189 | 16 | 159 | 7.02e-12 | 64.7 |
| MS.gene030715.t1 | MTR_1g062760 | 29.078 | 141 | 74 | 4 | 23 | 162 | 16 | 131 | 9.52e-12 | 63.9 |
| MS.gene030715.t1 | MTR_8g093740 | 31.902 | 163 | 81 | 7 | 23 | 183 | 15 | 149 | 1.63e-11 | 63.2 |
| MS.gene030715.t1 | MTR_8g006970 | 25.749 | 167 | 93 | 4 | 23 | 189 | 10 | 145 | 1.98e-11 | 62.4 |
| MS.gene030715.t1 | MTR_7g081700 | 25.150 | 167 | 94 | 4 | 23 | 189 | 10 | 145 | 8.79e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030715.t1 | AT5G64813 | 77.011 | 348 | 65 | 7 | 2 | 342 | 3 | 342 | 0.0 | 513 |
| MS.gene030715.t1 | AT5G64813 | 77.011 | 348 | 65 | 7 | 2 | 342 | 3 | 342 | 0.0 | 513 |
| MS.gene030715.t1 | AT5G64813 | 77.011 | 348 | 65 | 7 | 2 | 342 | 3 | 342 | 0.0 | 513 |
| MS.gene030715.t1 | AT5G09910 | 70.349 | 344 | 86 | 5 | 2 | 342 | 3 | 333 | 3.87e-163 | 459 |
| MS.gene030715.t1 | AT5G09910 | 70.349 | 344 | 86 | 5 | 2 | 342 | 3 | 333 | 3.87e-163 | 459 |
| MS.gene030715.t1 | AT5G09910 | 65.698 | 344 | 85 | 6 | 2 | 342 | 3 | 316 | 3.15e-145 | 413 |
| MS.gene030715.t1 | AT5G09910 | 65.698 | 344 | 85 | 6 | 2 | 342 | 3 | 316 | 3.15e-145 | 413 |
| MS.gene030715.t1 | AT5G09910 | 65.698 | 344 | 85 | 6 | 2 | 342 | 3 | 316 | 3.15e-145 | 413 |
| MS.gene030715.t1 | AT1G43890 | 32.515 | 163 | 80 | 6 | 23 | 183 | 15 | 149 | 2.42e-13 | 68.6 |
| MS.gene030715.t1 | AT1G43890 | 32.515 | 163 | 80 | 6 | 23 | 183 | 15 | 149 | 2.42e-13 | 68.6 |
| MS.gene030715.t1 | AT1G43890 | 32.515 | 163 | 80 | 6 | 23 | 183 | 15 | 149 | 2.42e-13 | 68.6 |
| MS.gene030715.t1 | AT5G03530 | 29.605 | 152 | 78 | 5 | 23 | 173 | 15 | 138 | 3.62e-11 | 62.4 |
| MS.gene030715.t1 | AT5G03530 | 29.605 | 152 | 78 | 5 | 23 | 173 | 15 | 138 | 3.62e-11 | 62.4 |
Find 87 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGTTCACCTTATCGTTAA+AGG | 0.183622 | 4.3:+9358766 | MS.gene030715:CDS |
| CCTGTTCCATATATTGTTAT+TGG | 0.188210 | 4.3:+9359290 | MS.gene030715:CDS |
| CATTTCCAGCACACTACTTA+TGG | 0.225792 | 4.3:+9358922 | MS.gene030715:intron |
| TTGTTACCAATAACAATATA+TGG | 0.272612 | 4.3:-9359296 | None:intergenic |
| CACACTACTTATGGAAATTC+TGG | 0.286680 | 4.3:+9358931 | MS.gene030715:CDS |
| GGAACGTGAGAGGGAGAATA+AGG | 0.330995 | 4.3:+9356652 | MS.gene030715:CDS |
| GTTGAACTGTGGGATGTATC+AGG | 0.360390 | 4.3:+9359000 | MS.gene030715:CDS |
| CCTTTGGGATCTGGCGGCCC+TGG | 0.368152 | 4.3:+9359260 | MS.gene030715:CDS |
| TTGAGGCGCTTACTGCAATA+AGG | 0.372575 | 4.3:-9359460 | None:intergenic |
| GCAGCTGAGATTGCTGCAAC+TGG | 0.375965 | 4.3:+9359224 | MS.gene030715:CDS |
| TTCTCATTCTTGCAGGTGTT+GGG | 0.377533 | 4.3:+9358734 | MS.gene030715:intron |
| GAACCAGACAAAGAAAATCT+AGG | 0.383439 | 4.3:-9361517 | None:intergenic |
| ACGCCAATGGGTCGAGAAGC+AGG | 0.392805 | 4.3:+9359379 | MS.gene030715:CDS |
| GATGATCAGTCTTATAATAC+AGG | 0.395791 | 4.3:+9361297 | MS.gene030715:CDS |
| AGGGTTTGGAAACCATGTTC+TGG | 0.396334 | 4.3:+9356627 | None:intergenic |
| CTACTGTACAACCAATTGTC+TGG | 0.410194 | 4.3:-9358810 | None:intergenic |
| GCTCGTCCTTCCCAGACAAT+TGG | 0.412167 | 4.3:+9358799 | MS.gene030715:CDS |
| TAGCTTTCAGAGACCGAAAC+TGG | 0.435235 | 4.3:-9361487 | None:intergenic |
| CTCTCTCAGAATCACCTTTG+AGG | 0.453797 | 4.3:-9358969 | None:intergenic |
| CCAATAACAATATATGGAAC+AGG | 0.458650 | 4.3:-9359290 | None:intergenic |
| AAAAGAAGCAAGGTATGATA+AGG | 0.458953 | 4.3:+9361034 | MS.gene030715:CDS |
| ATTCGCTGAGAAGATCTTTG+AGG | 0.468161 | 4.3:-9361231 | None:intergenic |
| GTCTGGGAAGGACGAGCAAT+GGG | 0.472190 | 4.3:-9358793 | None:intergenic |
| AGCTGATATTGTTGCAAAAG+AGG | 0.478431 | 4.3:+9359319 | MS.gene030715:CDS |
| CTATCCTCAACAACCAGTTT+CGG | 0.481026 | 4.3:+9361474 | MS.gene030715:CDS |
| CGAAGACGAGTTTGCAGAAG+TGG | 0.483875 | 4.3:+9359201 | MS.gene030715:CDS |
| AGATTGCGTTGAGCCGGAAG+TGG | 0.491900 | 4.3:-9361433 | None:intergenic |
| GTGCTCGTTGTTGGTGACTC+AGG | 0.492664 | 4.3:+9356710 | MS.gene030715:CDS |
| CTCACGTTCCCTCCAGAACA+TGG | 0.493187 | 4.3:-9356639 | None:intergenic |
| GGAGTTAGATTGCGTTGAGC+CGG | 0.493866 | 4.3:-9361439 | None:intergenic |
| AACCCTGCTTCTCGACCCAT+TGG | 0.497798 | 4.3:-9359382 | None:intergenic |
| TTGTTGATGTTGCACGCCAA+TGG | 0.504775 | 4.3:+9359366 | MS.gene030715:CDS |
| CATAACGGTGGAGTGCTTTG+TGG | 0.506067 | 4.3:+9356677 | MS.gene030715:CDS |
| AGTCAGTGGAAGCTCCTCGC+TGG | 0.509155 | 4.3:-9359414 | None:intergenic |
| ATGAAATACCTGCACCTACA+TGG | 0.516650 | 4.3:+9361196 | MS.gene030715:CDS |
| TGGGAGAACCTTTAACGATA+AGG | 0.517212 | 4.3:-9358774 | None:intergenic |
| AACGATAAGGTGAACTAAAG+AGG | 0.519763 | 4.3:-9358761 | None:intergenic |
| TTGGGATCTGGCGGCCCTGG+TGG | 0.522309 | 4.3:+9359263 | MS.gene030715:CDS |
| TGTTGATGTTGCACGCCAAT+GGG | 0.527951 | 4.3:+9359367 | MS.gene030715:CDS |
| TGAGGATAGAGTGTGGGTGG+TGG | 0.530789 | 4.3:-9361460 | None:intergenic |
| GAGATTTCTTTGTTGAACTG+TGG | 0.535232 | 4.3:+9358989 | MS.gene030715:CDS |
| TGAGAAGATCTTTGAGGTGA+AGG | 0.537945 | 4.3:-9361225 | None:intergenic |
| AGATCTTTGAGGTGAAGGAA+TGG | 0.539829 | 4.3:-9361220 | None:intergenic |
| TACTGTACAACCAATTGTCT+GGG | 0.540418 | 4.3:-9358809 | None:intergenic |
| AGTGGAAGCTCCTCGCTGGA+TGG | 0.542183 | 4.3:-9359410 | None:intergenic |
| CAAGTCAGAGTGCTCGTTGT+TGG | 0.544697 | 4.3:+9356701 | MS.gene030715:CDS |
| AACCAGACAAAGAAAATCTA+GGG | 0.551575 | 4.3:-9361516 | None:intergenic |
| GGAAGCATGTTATACTTGTA+CGG | 0.551656 | 4.3:-9361409 | None:intergenic |
| AGATTTCTTTGTTGAACTGT+GGG | 0.551856 | 4.3:+9358990 | MS.gene030715:CDS |
| GGAATGGACCATGTAGGTGC+AGG | 0.556023 | 4.3:-9361204 | None:intergenic |
| CAGCTGAGATTGCTGCAACT+GGG | 0.556342 | 4.3:+9359225 | MS.gene030715:CDS |
| TGTCTGGGAAGGACGAGCAA+TGG | 0.556939 | 4.3:-9358794 | None:intergenic |
| TGTTGAGGATAGAGTGTGGG+TGG | 0.563767 | 4.3:-9361463 | None:intergenic |
| TCAGTGAATAAAAGAGAGAT+CGG | 0.566338 | 4.3:-9359044 | None:intergenic |
| GATTGCGTTGAGCCGGAAGT+GGG | 0.566553 | 4.3:-9361432 | None:intergenic |
| GCTGATATTGTTGCAAAAGA+GGG | 0.567194 | 4.3:+9359320 | MS.gene030715:CDS |
| GCAATAAGGCCTCCACCACC+AGG | 0.569478 | 4.3:-9359446 | None:intergenic |
| AGCTCTTCAAGTAGCCTCAA+AGG | 0.575296 | 4.3:+9358955 | MS.gene030715:CDS |
| CGCCAATGGGTCGAGAAGCA+GGG | 0.583957 | 4.3:+9359380 | MS.gene030715:CDS |
| GAGGGTGCGAGAGGAAGCAG+CGG | 0.585539 | 4.3:+9359338 | MS.gene030715:CDS |
| AGAAGCAAGGTATGATAAGG+AGG | 0.588578 | 4.3:+9361037 | MS.gene030715:CDS |
| TTGCGTTGAGCCGGAAGTGG+GGG | 0.590536 | 4.3:-9361430 | None:intergenic |
| TATGGAACAGGAAGACCACC+AGG | 0.593874 | 4.3:-9359278 | None:intergenic |
| TGTTCTGGAGGGAACGTGAG+AGG | 0.595631 | 4.3:+9356642 | MS.gene030715:CDS |
| GTTTGGAAACCATGTTCTGG+AGG | 0.608805 | 4.3:+9356630 | None:intergenic |
| CCAGGGCCGCCAGATCCCAA+AGG | 0.609580 | 4.3:-9359260 | None:intergenic |
| GTACAACCAATTGTCTGGGA+AGG | 0.616763 | 4.3:-9358805 | None:intergenic |
| CCAGGAAAACTCTCAGTCAG+TGG | 0.617823 | 4.3:-9359428 | None:intergenic |
| TGGTTGTACAGTAGATGTGA+AGG | 0.618127 | 4.3:+9358819 | MS.gene030715:CDS |
| GTTCTGGAGGGAACGTGAGA+GGG | 0.619113 | 4.3:+9356643 | MS.gene030715:CDS |
| TACAGGCAGCAAAAGAAGCA+AGG | 0.630672 | 4.3:+9361024 | MS.gene030715:intron |
| GAGACCGAAACTGGTTGTTG+AGG | 0.633597 | 4.3:-9361478 | None:intergenic |
| TTTGGAAACCATGTTCTGGA+GGG | 0.634282 | 4.3:+9356631 | None:intergenic |
| GGTTGTTGAGGATAGAGTGT+GGG | 0.640336 | 4.3:-9361466 | None:intergenic |
| AGGGAGAATAAGGAACATAA+CGG | 0.642381 | 4.3:+9356662 | MS.gene030715:CDS |
| GTTGCAAAAGAGGGTGCGAG+AGG | 0.651488 | 4.3:+9359329 | MS.gene030715:CDS |
| ATTGCGTTGAGCCGGAAGTG+GGG | 0.655325 | 4.3:-9361431 | None:intergenic |
| AGGGTGCGAGAGGAAGCAGC+GGG | 0.661507 | 4.3:+9359339 | MS.gene030715:CDS |
| TCAGCTCCTTTGGGATCTGG+CGG | 0.672711 | 4.3:+9359254 | MS.gene030715:CDS |
| ATGATCAGTCTTATAATACA+GGG | 0.679216 | 4.3:+9361298 | MS.gene030715:CDS |
| GAAGACGAGTTTGCAGAAGT+GGG | 0.680237 | 4.3:+9359202 | MS.gene030715:CDS |
| GAGAATAAGGAACATAACGG+TGG | 0.686740 | 4.3:+9356665 | MS.gene030715:CDS |
| TGGTTGTTGAGGATAGAGTG+TGG | 0.696987 | 4.3:-9361467 | None:intergenic |
| GGGTTTGCTTCCATCCAGCG+AGG | 0.699492 | 4.3:+9359400 | MS.gene030715:CDS |
| GGTGAAGGAATGGACCATGT+AGG | 0.709587 | 4.3:-9361210 | None:intergenic |
| TAGATGAAATATCTTCTCAG+CGG | 0.726315 | 4.3:+9361253 | MS.gene030715:CDS |
| ATGGAACAGGAAGACCACCA+GGG | 0.755247 | 4.3:-9359277 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATCTAAATAGAAAT+AGG | + | chr4.3:9359988-9360007 | MS.gene030715:intron | 10.0% |
| !! | GGTATTTATTATATAATTAA+TGG | - | chr4.3:9358301-9358320 | None:intergenic | 10.0% |
| !! | TAAATAAATAAATAAATACG+AGG | - | chr4.3:9360935-9360954 | None:intergenic | 10.0% |
| !!! | AATATTATTTGATTTTGAAT+TGG | + | chr4.3:9357748-9357767 | MS.gene030715:intron | 10.0% |
| !!! | AATTTATTTTCAAAATCAAA+AGG | + | chr4.3:9360643-9360662 | MS.gene030715:intron | 10.0% |
| !!! | ATAATATTAAATTTTATCAC+AGG | - | chr4.3:9357736-9357755 | None:intergenic | 10.0% |
| !!! | ATTTTTATAAATTAACTTTG+GGG | + | chr4.3:9357890-9357909 | MS.gene030715:intron | 10.0% |
| !!! | CTATTTTTATAAATTAACTT+TGG | + | chr4.3:9357888-9357907 | MS.gene030715:intron | 10.0% |
| !! | ATAAAATTCTATAGAGAATA+TGG | + | chr4.3:9360068-9360087 | MS.gene030715:intron | 15.0% |
| !! | ATATAATCCATTTATAAAGT+AGG | + | chr4.3:9357959-9357978 | MS.gene030715:intron | 15.0% |
| !!! | AGTAGTTTTAATTTTTTTGT+CGG | + | chr4.3:9360996-9361015 | MS.gene030715:intron | 15.0% |
| !!! | TCTAATCTAGTTTTTTTTAA+GGG | - | chr4.3:9360603-9360622 | None:intergenic | 15.0% |
| !!! | TTCTAATCTAGTTTTTTTTA+AGG | - | chr4.3:9360604-9360623 | None:intergenic | 15.0% |
| !!! | TTTTATAAAACTGAAACAAT+AGG | - | chr4.3:9359091-9359110 | None:intergenic | 15.0% |
| !! | AACTTAAGATGTTATACTAT+CGG | + | chr4.3:9360811-9360830 | MS.gene030715:intron | 20.0% |
| !! | ACTGTTATAATATTTGATTG+AGG | + | chr4.3:9357379-9357398 | MS.gene030715:intron | 20.0% |
| !! | AGCAAATTAAGAAATAGAAA+CGG | - | chr4.3:9358161-9358180 | None:intergenic | 20.0% |
| !! | ATCAAAATCTAATGTTACTA+GGG | + | chr4.3:9357919-9357938 | MS.gene030715:intron | 20.0% |
| !! | TAAAACTACTATAAGAAGAA+TGG | - | chr4.3:9360986-9361005 | None:intergenic | 20.0% |
| !! | TATCAAAATCTAATGTTACT+AGG | + | chr4.3:9357918-9357937 | MS.gene030715:intron | 20.0% |
| !! | TATTAATAAGGGGAAATATT+TGG | + | chr4.3:9360309-9360328 | MS.gene030715:intron | 20.0% |
| !! | TTAGAAATTAGCATTAACAT+CGG | - | chr4.3:9359566-9359585 | None:intergenic | 20.0% |
| !! | TTCAATCAATCAAATATTAC+AGG | + | chr4.3:9357610-9357629 | MS.gene030715:intron | 20.0% |
| !! | TTGTTACCAATAACAATATA+TGG | - | chr4.3:9359299-9359318 | None:intergenic | 20.0% |
| !!! | AAATTGGTAGTATTAATAAG+GGG | + | chr4.3:9360299-9360318 | MS.gene030715:intron | 20.0% |
| !!! | ACAAATTGGTAGTATTAATA+AGG | + | chr4.3:9360297-9360316 | MS.gene030715:intron | 20.0% |
| !!! | CAAATTGGTAGTATTAATAA+GGG | + | chr4.3:9360298-9360317 | MS.gene030715:intron | 20.0% |
| !!! | CAACAACAATAAATTTTGTA+AGG | - | chr4.3:9361369-9361388 | None:intergenic | 20.0% |
| !!! | CTATTTCATCTGATATTTTA+TGG | - | chr4.3:9359867-9359886 | None:intergenic | 20.0% |
| ! | AACAATACATGTATCTTAAG+GGG | + | chr4.3:9360338-9360357 | MS.gene030715:intron | 25.0% |
| ! | AAGTAGGTTAACTTTGTATA+TGG | + | chr4.3:9357634-9357653 | MS.gene030715:intron | 25.0% |
| ! | AATAGAGAGAATCATAAAGT+AGG | - | chr4.3:9358673-9358692 | None:intergenic | 25.0% |
| ! | AATTCATTATCCATAATGAG+TGG | - | chr4.3:9360736-9360755 | None:intergenic | 25.0% |
| ! | ACTTAAGCCTACTTTATAAA+TGG | - | chr4.3:9357969-9357988 | None:intergenic | 25.0% |
| ! | AGAACAATACATGTATCTTA+AGG | + | chr4.3:9360336-9360355 | MS.gene030715:intron | 25.0% |
| ! | AGTAGGTTAACTTTGTATAT+GGG | + | chr4.3:9357635-9357654 | MS.gene030715:intron | 25.0% |
| ! | ATAGAGAGAATCATAAAGTA+GGG | - | chr4.3:9358672-9358691 | None:intergenic | 25.0% |
| ! | ATCAAATATTACAGGAAAGT+AGG | + | chr4.3:9357618-9357637 | MS.gene030715:intron | 25.0% |
| ! | ATTAACATCGGAATTATTCA+TGG | - | chr4.3:9359554-9359573 | None:intergenic | 25.0% |
| ! | ATTTGAAAAACTCTCAGATA+TGG | + | chr4.3:9358018-9358037 | MS.gene030715:intron | 25.0% |
| ! | CTAAAATTAGCCGTAATATA+TGG | + | chr4.3:9357422-9357441 | MS.gene030715:intron | 25.0% |
| ! | GAACAATACATGTATCTTAA+GGG | + | chr4.3:9360337-9360356 | MS.gene030715:intron | 25.0% |
| ! | GATGTTAATGCTAATTTCTA+AGG | + | chr4.3:9359565-9359584 | MS.gene030715:intron | 25.0% |
| ! | GTATACATGTTTAGATTTGA+AGG | + | chr4.3:9359112-9359131 | MS.gene030715:intron | 25.0% |
| ! | TATACATTCATTACACAACA+AGG | - | chr4.3:9360207-9360226 | None:intergenic | 25.0% |
| ! | TCAAGTATTAACAAGTATAG+TGG | + | chr4.3:9359592-9359611 | MS.gene030715:intron | 25.0% |
| ! | TTAATACTACCAATTTGTCT+TGG | - | chr4.3:9360295-9360314 | None:intergenic | 25.0% |
| ! | TTCTATAGAGAATATGGAAT+AGG | + | chr4.3:9360074-9360093 | MS.gene030715:intron | 25.0% |
| ! | TTGACAAATGTCAATTTCTT+TGG | + | chr4.3:9357538-9357557 | MS.gene030715:intron | 25.0% |
| ! | TTGGAATTTAGAAATCCATT+GGG | + | chr4.3:9357294-9357313 | MS.gene030715:intron | 25.0% |
| ! | TTTCAAAATCAAAAGGCTAA+TGG | + | chr4.3:9360650-9360669 | MS.gene030715:intron | 25.0% |
| !! | ATGATCAGTCTTATAATACA+GGG | + | chr4.3:9361298-9361317 | MS.gene030715:CDS | 25.0% |
| !! | ATTAAGATGTCTCTGAAAAA+TGG | - | chr4.3:9358697-9358716 | None:intergenic | 25.0% |
| !! | GTTTAAGTTAGAATTAACTC+TGG | + | chr4.3:9356877-9356896 | MS.gene030715:intron | 25.0% |
| !! | TTATTTTCTTCGCTAATGTT+TGG | - | chr4.3:9358614-9358633 | None:intergenic | 25.0% |
| !! | TTTGGAATTTAGAAATCCAT+TGG | + | chr4.3:9357293-9357312 | MS.gene030715:intron | 25.0% |
| !! | TTTTGAATTGGTTAAAGTTC+AGG | + | chr4.3:9357760-9357779 | MS.gene030715:intron | 25.0% |
| !!! | ACTTTACTGTGATTTTTTAG+CGG | + | chr4.3:9357208-9357227 | MS.gene030715:intron | 25.0% |
| !!! | ATCACAGGACTTTTAAAAAT+TGG | - | chr4.3:9360477-9360496 | None:intergenic | 25.0% |
| !!! | ATGGAATAGCTTTGTTTTAA+TGG | - | chr4.3:9359780-9359799 | None:intergenic | 25.0% |
| !!! | ATTTTTTTATGACGTGAATC+AGG | - | chr4.3:9358268-9358287 | None:intergenic | 25.0% |
| !!! | CTCTTTTATTCACTGATTAA+TGG | + | chr4.3:9359051-9359070 | MS.gene030715:CDS | 25.0% |
| !!! | GAAATAGAGCTATTTTAGAA+GGG | + | chr4.3:9359880-9359899 | MS.gene030715:intron | 25.0% |
| !!! | GATTTTGATAGAATTGATTC+CGG | + | chr4.3:9356808-9356827 | MS.gene030715:intron | 25.0% |
| !!! | GTTTCTAAGGTACATAAATA+AGG | - | chr4.3:9357158-9357177 | None:intergenic | 25.0% |
| !!! | TGAAATAGAGCTATTTTAGA+AGG | + | chr4.3:9359879-9359898 | MS.gene030715:intron | 25.0% |
| !!! | TGGAATAGCTTTGTTTTAAT+GGG | - | chr4.3:9359779-9359798 | None:intergenic | 25.0% |
| AAAAGAAGCAAGGTATGATA+AGG | + | chr4.3:9361034-9361053 | MS.gene030715:CDS | 30.0% | |
| AAACATTGAAGAAACACAGA+TGG | - | chr4.3:9360506-9360525 | None:intergenic | 30.0% | |
| AACCAGACAAAGAAAATCTA+GGG | - | chr4.3:9361519-9361538 | None:intergenic | 30.0% | |
| ACAAATAGTTAAATGCCAAG+TGG | - | chr4.3:9359842-9359861 | None:intergenic | 30.0% | |
| AGAGTCAGATTAGTAAAAAC+AGG | - | chr4.3:9359810-9359829 | None:intergenic | 30.0% | |
| AGATTTCTTTGTTGAACTGT+GGG | + | chr4.3:9358990-9359009 | MS.gene030715:CDS | 30.0% | |
| AGGTAAGCATTTCACATTAT+AGG | + | chr4.3:9358839-9358858 | MS.gene030715:intron | 30.0% | |
| AGTACAATCAATTAAGCCTA+AGG | - | chr4.3:9358433-9358452 | None:intergenic | 30.0% | |
| AGTGACACAAAATTTAGTTG+AGG | - | chr4.3:9359480-9359499 | None:intergenic | 30.0% | |
| ATAAATGTACTCTACACACT+CGG | - | chr4.3:9357455-9357474 | None:intergenic | 30.0% | |
| ATAAGCACAACTGATACTTT+AGG | - | chr4.3:9360869-9360888 | None:intergenic | 30.0% | |
| ATGTTTAGATTTGAAGGAAG+TGG | + | chr4.3:9359118-9359137 | MS.gene030715:intron | 30.0% | |
| ATTGTTTGAACTTCATTTGC+AGG | + | chr4.3:9359143-9359162 | MS.gene030715:intron | 30.0% | |
| CAAATGTGTCTATACTCAAA+GGG | - | chr4.3:9360256-9360275 | None:intergenic | 30.0% | |
| CCAATAACAATATATGGAAC+AGG | - | chr4.3:9359293-9359312 | None:intergenic | 30.0% | |
| CCTGTTCCATATATTGTTAT+TGG | + | chr4.3:9359290-9359309 | MS.gene030715:CDS | 30.0% | |
| CTACTTCTAATCTAGATAGT+TGG | - | chr4.3:9360576-9360595 | None:intergenic | 30.0% | |
| GGTAAGCATTTCACATTATA+GGG | + | chr4.3:9358840-9358859 | MS.gene030715:intron | 30.0% | |
| GTAAAGCAGATCATTTCTAT+TGG | - | chr4.3:9359934-9359953 | None:intergenic | 30.0% | |
| TAAACGATGAATAGTGTGTT+TGG | + | chr4.3:9358501-9358520 | MS.gene030715:intron | 30.0% | |
| TAAGTTAGAATTAACTCTGG+AGG | + | chr4.3:9356880-9356899 | MS.gene030715:intron | 30.0% | |
| TAGAGAGAATCATAAAGTAG+GGG | - | chr4.3:9358671-9358690 | None:intergenic | 30.0% | |
| TAGATGAAATATCTTCTCAG+CGG | + | chr4.3:9361253-9361272 | MS.gene030715:CDS | 30.0% | |
| TATGATGAATTTAACTCAGC+TGG | + | chr4.3:9357112-9357131 | MS.gene030715:intron | 30.0% | |
| TCAAATGTGTCTATACTCAA+AGG | - | chr4.3:9360257-9360276 | None:intergenic | 30.0% | |
| TCAGTGAATAAAAGAGAGAT+CGG | - | chr4.3:9359047-9359066 | None:intergenic | 30.0% | |
| TCTTCTCCTAATCAACTAAA+AGG | - | chr4.3:9361166-9361185 | None:intergenic | 30.0% | |
| TTAGTTCACCTTATCGTTAA+AGG | + | chr4.3:9358766-9358785 | MS.gene030715:CDS | 30.0% | |
| TTCTTTATAGCCACTCATTA+TGG | + | chr4.3:9360723-9360742 | MS.gene030715:intron | 30.0% | |
| ! | ATCATCTAAAGCATAGAAAG+TGG | - | chr4.3:9359520-9359539 | None:intergenic | 30.0% |
| ! | CTTAAGGGGTCTTATAAATA+GGG | + | chr4.3:9360352-9360371 | MS.gene030715:intron | 30.0% |
| ! | GATGATCAGTCTTATAATAC+AGG | + | chr4.3:9361297-9361316 | MS.gene030715:CDS | 30.0% |
| ! | TCTTAAGGGGTCTTATAAAT+AGG | + | chr4.3:9360351-9360370 | MS.gene030715:intron | 30.0% |
| ! | TGATATTTTCTCATTCTTGC+AGG | + | chr4.3:9358727-9358746 | MS.gene030715:intron | 30.0% |
| !! | TTCTTCAACTTACTTTTAGC+CGG | - | chr4.3:9356830-9356849 | None:intergenic | 30.0% |
| !! | TTTGTTCTGTACTTTAAAGC+TGG | + | chr4.3:9359636-9359655 | MS.gene030715:intron | 30.0% |
| !!! | CTTTACTGTGATTTTTTAGC+GGG | + | chr4.3:9357209-9357228 | MS.gene030715:intron | 30.0% |
| !!! | TTTACTGTGATTTTTTAGCG+GGG | + | chr4.3:9357210-9357229 | MS.gene030715:intron | 30.0% |
| !!! | TTTTTGAAGTGTGCAAGTTA+TGG | + | chr4.3:9357055-9357074 | MS.gene030715:intron | 30.0% |
| AACATCGGAATTATTCATGG+AGG | - | chr4.3:9359551-9359570 | None:intergenic | 35.0% | |
| AACGATAAGGTGAACTAAAG+AGG | - | chr4.3:9358764-9358783 | None:intergenic | 35.0% | |
| AAGCTACTATTTGTAGCTTG+TGG | - | chr4.3:9358561-9358580 | None:intergenic | 35.0% | |
| AATTTCCATAAGTAGTGTGC+TGG | - | chr4.3:9358930-9358949 | None:intergenic | 35.0% | |
| ACACTGTTTATTCGATCACA+TGG | - | chr4.3:9360453-9360472 | None:intergenic | 35.0% | |
| ACCATTTCAGATACAGTGAT+AGG | - | chr4.3:9359712-9359731 | None:intergenic | 35.0% | |
| AGAACTTAGAAGTAGGAAGA+TGG | + | chr4.3:9357487-9357506 | MS.gene030715:intron | 35.0% | |
| AGAGAGAATCATAAAGTAGG+GGG | - | chr4.3:9358670-9358689 | None:intergenic | 35.0% | |
| AGCTGATATTGTTGCAAAAG+AGG | + | chr4.3:9359319-9359338 | MS.gene030715:CDS | 35.0% | |
| AGGGAGAATAAGGAACATAA+CGG | + | chr4.3:9356662-9356681 | MS.gene030715:CDS | 35.0% | |
| AGTATTTCGTCAAATCAAGC+AGG | - | chr4.3:9358128-9358147 | None:intergenic | 35.0% | |
| ATTCCTCTATGACAAATCTG+TGG | - | chr4.3:9357994-9358013 | None:intergenic | 35.0% | |
| CACACTACTTATGGAAATTC+TGG | + | chr4.3:9358931-9358950 | MS.gene030715:CDS | 35.0% | |
| CATCCATCAACTAAACTCTA+AGG | - | chr4.3:9359736-9359755 | None:intergenic | 35.0% | |
| CCATTTCAGATACAGTGATA+GGG | - | chr4.3:9359711-9359730 | None:intergenic | 35.0% | |
| CTACTATAAGAAGAATGGAC+TGG | - | chr4.3:9360981-9361000 | None:intergenic | 35.0% | |
| CTGTAATGCAAACGACTATA+TGG | + | chr4.3:9357691-9357710 | MS.gene030715:intron | 35.0% | |
| GAACCAGACAAAGAAAATCT+AGG | - | chr4.3:9361520-9361539 | None:intergenic | 35.0% | |
| GAGATTTCTTTGTTGAACTG+TGG | + | chr4.3:9358989-9359008 | MS.gene030715:CDS | 35.0% | |
| GCTGATATTGTTGCAAAAGA+GGG | + | chr4.3:9359320-9359339 | MS.gene030715:CDS | 35.0% | |
| GTACCTTAGAGTTTAGTTGA+TGG | + | chr4.3:9359730-9359749 | MS.gene030715:intron | 35.0% | |
| GTCAGATTAGTAAAAACAGG+AGG | - | chr4.3:9359807-9359826 | None:intergenic | 35.0% | |
| TAAAGCACAAAGCTCTTCTA+AGG | - | chr4.3:9357188-9357207 | None:intergenic | 35.0% | |
| TACTGTACAACCAATTGTCT+GGG | - | chr4.3:9358812-9358831 | None:intergenic | 35.0% | |
| TATGACGTGAATCAGGAAAA+GGG | - | chr4.3:9358261-9358280 | None:intergenic | 35.0% | |
| TCAAGACTTGAGTGAATCAT+AGG | + | chr4.3:9356855-9356874 | MS.gene030715:intron | 35.0% | |
| TCCTAATCAACTAAAAGGAG+AGG | - | chr4.3:9361161-9361180 | None:intergenic | 35.0% | |
| TTATGACGTGAATCAGGAAA+AGG | - | chr4.3:9358262-9358281 | None:intergenic | 35.0% | |
| TTCCTCTATGACAAATCTGT+GGG | - | chr4.3:9357993-9358012 | None:intergenic | 35.0% | |
| ! | CTTTTCAGTCCAAGACAAAT+TGG | + | chr4.3:9360283-9360302 | MS.gene030715:intron | 35.0% |
| ! | GAATAGTGTGTTTGGAATTG+CGG | + | chr4.3:9358509-9358528 | MS.gene030715:intron | 35.0% |
| ! | GGAAGCATGTTATACTTGTA+CGG | - | chr4.3:9361412-9361431 | None:intergenic | 35.0% |
| ! | TACCCTAGATTTTCTTTGTC+TGG | + | chr4.3:9361514-9361533 | MS.gene030715:CDS | 35.0% |
| ! | TACTATTTGTAGCTTGTGGT+TGG | - | chr4.3:9358557-9358576 | None:intergenic | 35.0% |
| ! | TGTGATTAAGTTTTTCCGCA+TGG | + | chr4.3:9361061-9361080 | MS.gene030715:CDS | 35.0% |
| !! | AAGTCAAGTTGATTGAGTGA+AGG | + | chr4.3:9357262-9357281 | MS.gene030715:intron | 35.0% |
| !! | ACCTCTCCTTTTAGTTGATT+AGG | + | chr4.3:9361157-9361176 | MS.gene030715:intron | 35.0% |
| !! | AGTTTAGTTGATGGATGAAG+AGG | + | chr4.3:9359739-9359758 | MS.gene030715:intron | 35.0% |
| !! | CTGCTTTAGAACTTAGAAGT+AGG | + | chr4.3:9357480-9357499 | MS.gene030715:intron | 35.0% |
| !!! | TTTTTTTGTCGGATGACTAC+AGG | + | chr4.3:9361007-9361026 | MS.gene030715:intron | 35.0% |
| ACTTAGAAGTAGGAAGATGG+TGG | + | chr4.3:9357490-9357509 | MS.gene030715:intron | 40.0% | |
| AGAAGCAAGGTATGATAAGG+AGG | + | chr4.3:9361037-9361056 | MS.gene030715:CDS | 40.0% | |
| AGTAAAAACAGGAGGCAACA+TGG | - | chr4.3:9359799-9359818 | None:intergenic | 40.0% | |
| ATGAAATACCTGCACCTACA+TGG | + | chr4.3:9361196-9361215 | MS.gene030715:CDS | 40.0% | |
| ATGGAATAGGTTACTCTGTC+AGG | + | chr4.3:9360087-9360106 | MS.gene030715:intron | 40.0% | |
| ATTCGCTGAGAAGATCTTTG+AGG | - | chr4.3:9361234-9361253 | None:intergenic | 40.0% | |
| CAAAGACATTACTGACCATG+CGG | - | chr4.3:9361079-9361098 | None:intergenic | 40.0% | |
| CACAGATGGTTGAAAATCAC+AGG | - | chr4.3:9360492-9360511 | None:intergenic | 40.0% | |
| CATTTCCAGCACACTACTTA+TGG | + | chr4.3:9358922-9358941 | MS.gene030715:intron | 40.0% | |
| CCCTATCACTGTATCTGAAA+TGG | + | chr4.3:9359708-9359727 | MS.gene030715:intron | 40.0% | |
| CCTAAGGATAGACAACTTGA+GGG | - | chr4.3:9358417-9358436 | None:intergenic | 40.0% | |
| CGGCATGACACCATATATTA+CGG | - | chr4.3:9357435-9357454 | None:intergenic | 40.0% | |
| CTACTGTACAACCAATTGTC+TGG | - | chr4.3:9358813-9358832 | None:intergenic | 40.0% | |
| CTATCCTCAACAACCAGTTT+CGG | + | chr4.3:9361474-9361493 | MS.gene030715:CDS | 40.0% | |
| GACTCTCTACTATATCCACT+TGG | + | chr4.3:9359824-9359843 | MS.gene030715:intron | 40.0% | |
| GAGAATAAGGAACATAACGG+TGG | + | chr4.3:9356665-9356684 | MS.gene030715:CDS | 40.0% | |
| GAGAGAATCATAAAGTAGGG+GGG | - | chr4.3:9358669-9358688 | None:intergenic | 40.0% | |
| GATGAATTTAACTCAGCTGG+TGG | + | chr4.3:9357115-9357134 | MS.gene030715:intron | 40.0% | |
| GCACTAGTACAAAATCCCAA+TGG | - | chr4.3:9357312-9357331 | None:intergenic | 40.0% | |
| GTAGTGTGCTGGAAATGAAA+CGG | - | chr4.3:9358919-9358938 | None:intergenic | 40.0% | |
| GTATATGGGTGTTTGACTCT+AGG | + | chr4.3:9357649-9357668 | MS.gene030715:intron | 40.0% | |
| TGGGAGAACCTTTAACGATA+AGG | - | chr4.3:9358777-9358796 | None:intergenic | 40.0% | |
| TGGTTGTACAGTAGATGTGA+AGG | + | chr4.3:9358819-9358838 | MS.gene030715:CDS | 40.0% | |
| TTCCCACAGATTTGTCATAG+AGG | + | chr4.3:9357988-9358007 | MS.gene030715:intron | 40.0% | |
| TTCTCATTCTTGCAGGTGTT+GGG | + | chr4.3:9358734-9358753 | MS.gene030715:intron | 40.0% | |
| TTTCTCATTCTTGCAGGTGT+TGG | + | chr4.3:9358733-9358752 | MS.gene030715:intron | 40.0% | |
| ! | AAGGGCATAAGTTTGGACTT+GGG | - | chr4.3:9358457-9358476 | None:intergenic | 40.0% |
| ! | AATTTTGTCTCCTGCAGTAG+TGG | + | chr4.3:9356953-9356972 | MS.gene030715:intron | 40.0% |
| ! | AGGGGTCTTATAAATAGGGA+CGG | + | chr4.3:9360356-9360375 | MS.gene030715:intron | 40.0% |
| ! | CCATCTGACTTTCTGTTTTC+CGG | - | chr4.3:9358322-9358341 | None:intergenic | 40.0% |
| ! | CTAAGGTAAGCTGGTTTCTA+AGG | - | chr4.3:9357171-9357190 | None:intergenic | 40.0% |
| !! | AAAGCTCTTCTAAGGTAAGC+TGG | - | chr4.3:9357180-9357199 | None:intergenic | 40.0% |
| !! | ACATATGAGAGAAGTGCCTA+AGG | - | chr4.3:9360128-9360147 | None:intergenic | 40.0% |
| !! | AGATCTTTGAGGTGAAGGAA+TGG | - | chr4.3:9361223-9361242 | None:intergenic | 40.0% |
| !! | CATATGAGAGAAGTGCCTAA+GGG | - | chr4.3:9360127-9360146 | None:intergenic | 40.0% |
| !! | TCAAGTTGATTGAGTGAAGG+AGG | + | chr4.3:9357265-9357284 | MS.gene030715:intron | 40.0% |
| !! | TGAGAAGATCTTTGAGGTGA+AGG | - | chr4.3:9361228-9361247 | None:intergenic | 40.0% |
| !! | TTCTGTACTTTAAAGCTGGC+TGG | + | chr4.3:9359640-9359659 | MS.gene030715:intron | 40.0% |
| AACCAAACACACTCGTTGAG+AGG | - | chr4.3:9356771-9356790 | None:intergenic | 45.0% | |
| ACCAAACACACTCGTTGAGA+GGG | - | chr4.3:9356770-9356789 | None:intergenic | 45.0% | |
| AGAATCATAAAGTAGGGGGG+AGG | - | chr4.3:9358666-9358685 | None:intergenic | 45.0% | |
| AGCTCTTCAAGTAGCCTCAA+AGG | + | chr4.3:9358955-9358974 | MS.gene030715:CDS | 45.0% | |
| AGTTGACTGATGCACATCGA+AGG | - | chr4.3:9358476-9358495 | None:intergenic | 45.0% | |
| ATGCTTAGTTCCACTACTGC+AGG | - | chr4.3:9356966-9356985 | None:intergenic | 45.0% | |
| CACACACAGCTATAAAAGCG+AGG | - | chr4.3:9357850-9357869 | None:intergenic | 45.0% | |
| CCGGAAAACAGAAAGTCAGA+TGG | + | chr4.3:9358319-9358338 | MS.gene030715:intron | 45.0% | |
| CGTACTTTCGAGATCTATGC+TGG | + | chr4.3:9357562-9357581 | MS.gene030715:intron | 45.0% | |
| CTCTCTCAGAATCACCTTTG+AGG | - | chr4.3:9358972-9358991 | None:intergenic | 45.0% | |
| GAAGACGAGTTTGCAGAAGT+GGG | + | chr4.3:9359202-9359221 | MS.gene030715:CDS | 45.0% | |
| GAATCATAAAGTAGGGGGGA+GGG | - | chr4.3:9358665-9358684 | None:intergenic | 45.0% | |
| GATGTGCATCAGTCAACTGT+AGG | + | chr4.3:9358478-9358497 | MS.gene030715:intron | 45.0% | |
| GCCTAAGGATAGACAACTTG+AGG | - | chr4.3:9358418-9358437 | None:intergenic | 45.0% | |
| GGTTGTTGAGGATAGAGTGT+GGG | - | chr4.3:9361469-9361488 | None:intergenic | 45.0% | |
| GTACAACCAATTGTCTGGGA+AGG | - | chr4.3:9358808-9358827 | None:intergenic | 45.0% | |
| GTCCTATGTAGAAGACCCTT+AGG | + | chr4.3:9360109-9360128 | MS.gene030715:intron | 45.0% | |
| GTTGAACTGTGGGATGTATC+AGG | + | chr4.3:9359000-9359019 | MS.gene030715:CDS | 45.0% | |
| GTTGACTGATGCACATCGAA+GGG | - | chr4.3:9358475-9358494 | None:intergenic | 45.0% | |
| GTTGATTGAGTGAAGGAGGT+TGG | + | chr4.3:9357269-9357288 | MS.gene030715:intron | 45.0% | |
| TACAGGCAGCAAAAGAAGCA+AGG | + | chr4.3:9361024-9361043 | MS.gene030715:intron | 45.0% | |
| TAGACAACTTGAGGGCAGTT+TGG | - | chr4.3:9358409-9358428 | None:intergenic | 45.0% | |
| TAGCTTTCAGAGACCGAAAC+TGG | - | chr4.3:9361490-9361509 | None:intergenic | 45.0% | |
| TCTGCTTTACTCGACTGATG+AGG | + | chr4.3:9359944-9359963 | MS.gene030715:intron | 45.0% | |
| TGAGTGAAGGAGGTTGGATT+TGG | + | chr4.3:9357275-9357294 | MS.gene030715:intron | 45.0% | |
| TGCCACTGAAACTCGTAGAT+CGG | + | chr4.3:9357329-9357348 | MS.gene030715:intron | 45.0% | |
| TGCCTAAGGGTCTTCTACAT+AGG | - | chr4.3:9360114-9360133 | None:intergenic | 45.0% | |
| TGGTTGTTGAGGATAGAGTG+TGG | - | chr4.3:9361470-9361489 | None:intergenic | 45.0% | |
| TGTTGATGTTGCACGCCAAT+GGG | + | chr4.3:9359367-9359386 | MS.gene030715:CDS | 45.0% | |
| TTGTTGATGTTGCACGCCAA+TGG | + | chr4.3:9359366-9359385 | MS.gene030715:CDS | 45.0% | |
| ! | CACATCGAAGGGCATAAGTT+TGG | - | chr4.3:9358464-9358483 | None:intergenic | 45.0% |
| ! | CCCTCAAGTTGTCTATCCTT+AGG | + | chr4.3:9358414-9358433 | MS.gene030715:intron | 45.0% |
| ! | GAAGGGCATAAGTTTGGACT+TGG | - | chr4.3:9358458-9358477 | None:intergenic | 45.0% |
| ! | GGGACATTTTCAGCTCCTTT+GGG | + | chr4.3:9359245-9359264 | MS.gene030715:CDS | 45.0% |
| ! | TGGGACATTTTCAGCTCCTT+TGG | + | chr4.3:9359244-9359263 | MS.gene030715:CDS | 45.0% |
| ! | TTGAGGCGCTTACTGCAATA+AGG | - | chr4.3:9359463-9359482 | None:intergenic | 45.0% |
| !! | TTGACTTTTTCCACACGACG+CGG | - | chr4.3:9357249-9357268 | None:intergenic | 45.0% |
| !!! | CTGTGATTTTTTAGCGGGGA+TGG | + | chr4.3:9357214-9357233 | MS.gene030715:intron | 45.0% |
| !!! | TTTTCAGCTCCTTTGGGATC+TGG | + | chr4.3:9359251-9359270 | MS.gene030715:CDS | 45.0% |
| !! | AATTATAAATATATCAAATT+CGG | - | chr4.3:9357001-9357020 | None:intergenic | 5.0% |
| !! | ATTAATTATATAATAAATAC+CGG | + | chr4.3:9358300-9358319 | MS.gene030715:intron | 5.0% |
| !! | TAAATTTAAACAAAAAATAA+AGG | - | chr4.3:9361112-9361131 | None:intergenic | 5.0% |
| !!! | TATTTTTATAAATTAACTTT+GGG | + | chr4.3:9357889-9357908 | MS.gene030715:intron | 5.0% |
| !!! | TATTTTTTGTTTAAATTTAT+GGG | + | chr4.3:9361113-9361132 | MS.gene030715:intron | 5.0% |
| !!! | TTATTTTTTGTTTAAATTTA+TGG | + | chr4.3:9361112-9361131 | MS.gene030715:intron | 5.0% |
| !!! | TTTGATATATTTATAATTTT+TGG | + | chr4.3:9357003-9357022 | MS.gene030715:intron | 5.0% |
| ATGGAACAGGAAGACCACCA+GGG | - | chr4.3:9359280-9359299 | None:intergenic | 50.0% | |
| CAGCTGAGATTGCTGCAACT+GGG | + | chr4.3:9359225-9359244 | MS.gene030715:CDS | 50.0% | |
| CCAGGAAAACTCTCAGTCAG+TGG | - | chr4.3:9359431-9359450 | None:intergenic | 50.0% | |
| CGAAGACGAGTTTGCAGAAG+TGG | + | chr4.3:9359201-9359220 | MS.gene030715:CDS | 50.0% | |
| CTGAAACTCGTAGATCGGGA+CGG | + | chr4.3:9357334-9357353 | MS.gene030715:intron | 50.0% | |
| GAGACCGAAACTGGTTGTTG+AGG | - | chr4.3:9361481-9361500 | None:intergenic | 50.0% | |
| GCCACTGAAACTCGTAGATC+GGG | + | chr4.3:9357330-9357349 | MS.gene030715:intron | 50.0% | |
| GGAACGTGAGAGGGAGAATA+AGG | + | chr4.3:9356652-9356671 | MS.gene030715:CDS | 50.0% | |
| GGAGTTAGATTGCGTTGAGC+CGG | - | chr4.3:9361442-9361461 | None:intergenic | 50.0% | |
| GGTGAAGGAATGGACCATGT+AGG | - | chr4.3:9361213-9361232 | None:intergenic | 50.0% | |
| GTGTGCTGGAAATGAAACGG+AGG | - | chr4.3:9358916-9358935 | None:intergenic | 50.0% | |
| TAACATGCTTCCCCCACTTC+CGG | + | chr4.3:9361420-9361439 | MS.gene030715:CDS | 50.0% | |
| TATGGAACAGGAAGACCACC+AGG | - | chr4.3:9359281-9359300 | None:intergenic | 50.0% | |
| TCCCGATCTACGAGTTTCAG+TGG | - | chr4.3:9357334-9357353 | None:intergenic | 50.0% | |
| TCCCTCTCAACGAGTGTGTT+TGG | + | chr4.3:9356766-9356785 | MS.gene030715:intron | 50.0% | |
| TGTTGAGGATAGAGTGTGGG+TGG | - | chr4.3:9361466-9361485 | None:intergenic | 50.0% | |
| ! | ACTGAGAGTTTTCCTGGTGG+TGG | + | chr4.3:9359434-9359453 | MS.gene030715:CDS | 50.0% |
| ! | CAAGTCAGAGTGCTCGTTGT+TGG | + | chr4.3:9356701-9356720 | MS.gene030715:CDS | 50.0% |
| ! | CATAACGGTGGAGTGCTTTG+TGG | + | chr4.3:9356677-9356696 | MS.gene030715:CDS | 50.0% |
| ! | CTGACTGAGAGTTTTCCTGG+TGG | + | chr4.3:9359431-9359450 | MS.gene030715:CDS | 50.0% |
| !! | CCACTGACTGAGAGTTTTCC+TGG | + | chr4.3:9359428-9359447 | MS.gene030715:CDS | 50.0% |
| !! | TGACTTTTTCCACACGACGC+GGG | - | chr4.3:9357248-9357267 | None:intergenic | 50.0% |
| AACCCTGCTTCTCGACCCAT+TGG | - | chr4.3:9359385-9359404 | None:intergenic | 55.0% | |
| AGATTGCGTTGAGCCGGAAG+TGG | - | chr4.3:9361436-9361455 | None:intergenic | 55.0% | |
| AGGGCAAGCAGTCACATGCT+CGG | - | chr4.3:9358646-9358665 | None:intergenic | 55.0% | |
| ATTGCGTTGAGCCGGAAGTG+GGG | - | chr4.3:9361434-9361453 | None:intergenic | 55.0% | |
| GAAAATTTCCCCGCGTCGTG+TGG | + | chr4.3:9357236-9357255 | MS.gene030715:intron | 55.0% | |
| GATTGCGTTGAGCCGGAAGT+GGG | - | chr4.3:9361435-9361454 | None:intergenic | 55.0% | |
| GCAGCTGAGATTGCTGCAAC+TGG | + | chr4.3:9359224-9359243 | MS.gene030715:CDS | 55.0% | |
| GCTCGTCCTTCCCAGACAAT+TGG | + | chr4.3:9358799-9358818 | MS.gene030715:CDS | 55.0% | |
| GGAATGGACCATGTAGGTGC+AGG | - | chr4.3:9361207-9361226 | None:intergenic | 55.0% | |
| GTCTGGGAAGGACGAGCAAT+GGG | - | chr4.3:9358796-9358815 | None:intergenic | 55.0% | |
| TGAGGATAGAGTGTGGGTGG+TGG | - | chr4.3:9361463-9361482 | None:intergenic | 55.0% | |
| TGTCTGGGAAGGACGAGCAA+TGG | - | chr4.3:9358797-9358816 | None:intergenic | 55.0% | |
| ! | GTTGCAAAAGAGGGTGCGAG+AGG | + | chr4.3:9359329-9359348 | MS.gene030715:CDS | 55.0% |
| !! | GACTTTTTCCACACGACGCG+GGG | - | chr4.3:9357247-9357266 | None:intergenic | 55.0% |
| !! | GTGCTCGTTGTTGGTGACTC+AGG | + | chr4.3:9356710-9356729 | MS.gene030715:CDS | 55.0% |
| !! | GTTCTGGAGGGAACGTGAGA+GGG | + | chr4.3:9356643-9356662 | MS.gene030715:CDS | 55.0% |
| !! | TCAGCTCCTTTGGGATCTGG+CGG | + | chr4.3:9359254-9359273 | MS.gene030715:CDS | 55.0% |
| !! | TGTTCTGGAGGGAACGTGAG+AGG | + | chr4.3:9356642-9356661 | MS.gene030715:CDS | 55.0% |
| !!! | GAGAGTTTTCCTGGTGGTGG+AGG | + | chr4.3:9359437-9359456 | MS.gene030715:CDS | 55.0% |
| ACGCCAATGGGTCGAGAAGC+AGG | + | chr4.3:9359379-9359398 | MS.gene030715:CDS | 60.0% | |
| AGTCAGTGGAAGCTCCTCGC+TGG | - | chr4.3:9359417-9359436 | None:intergenic | 60.0% | |
| AGTGGAAGCTCCTCGCTGGA+TGG | - | chr4.3:9359413-9359432 | None:intergenic | 60.0% | |
| CGCCAATGGGTCGAGAAGCA+GGG | + | chr4.3:9359380-9359399 | MS.gene030715:CDS | 60.0% | |
| GCAATAAGGCCTCCACCACC+AGG | - | chr4.3:9359449-9359468 | None:intergenic | 60.0% | |
| GGAGCTGAGCGAAGCTAGTG+TGG | + | chr4.3:9357781-9357800 | MS.gene030715:intron | 60.0% | |
| TTGCGTTGAGCCGGAAGTGG+GGG | - | chr4.3:9361433-9361452 | None:intergenic | 60.0% | |
| ! | GGGTTTGCTTCCATCCAGCG+AGG | + | chr4.3:9359400-9359419 | MS.gene030715:CDS | 60.0% |
| AGGGTGCGAGAGGAAGCAGC+GGG | + | chr4.3:9359339-9359358 | MS.gene030715:CDS | 65.0% | |
| ! | GAGGGTGCGAGAGGAAGCAG+CGG | + | chr4.3:9359338-9359357 | MS.gene030715:CDS | 65.0% |
| CCAGGGCCGCCAGATCCCAA+AGG | - | chr4.3:9359263-9359282 | None:intergenic | 70.0% | |
| TTGGGATCTGGCGGCCCTGG+TGG | + | chr4.3:9359263-9359282 | MS.gene030715:CDS | 70.0% | |
| !! | CCTTTGGGATCTGGCGGCCC+TGG | + | chr4.3:9359260-9359279 | MS.gene030715:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 9356641 | 9361591 | 9356641 | ID=MS.gene030715 |
| chr4.3 | mRNA | 9356641 | 9361591 | 9356641 | ID=MS.gene030715.t1;Parent=MS.gene030715 |
| chr4.3 | exon | 9356641 | 9356731 | 9356641 | ID=MS.gene030715.t1.exon1;Parent=MS.gene030715.t1 |
| chr4.3 | CDS | 9356641 | 9356731 | 9356641 | ID=cds.MS.gene030715.t1;Parent=MS.gene030715.t1 |
| chr4.3 | exon | 9358749 | 9358840 | 9358749 | ID=MS.gene030715.t1.exon2;Parent=MS.gene030715.t1 |
| chr4.3 | CDS | 9358749 | 9358840 | 9358749 | ID=cds.MS.gene030715.t1;Parent=MS.gene030715.t1 |
| chr4.3 | exon | 9358931 | 9359072 | 9358931 | ID=MS.gene030715.t1.exon3;Parent=MS.gene030715.t1 |
| chr4.3 | CDS | 9358931 | 9359072 | 9358931 | ID=cds.MS.gene030715.t1;Parent=MS.gene030715.t1 |
| chr4.3 | exon | 9359165 | 9359469 | 9359165 | ID=MS.gene030715.t1.exon4;Parent=MS.gene030715.t1 |
| chr4.3 | CDS | 9359165 | 9359469 | 9359165 | ID=cds.MS.gene030715.t1;Parent=MS.gene030715.t1 |
| chr4.3 | exon | 9361029 | 9361082 | 9361029 | ID=MS.gene030715.t1.exon5;Parent=MS.gene030715.t1 |
| chr4.3 | CDS | 9361029 | 9361082 | 9361029 | ID=cds.MS.gene030715.t1;Parent=MS.gene030715.t1 |
| chr4.3 | exon | 9361171 | 9361319 | 9361171 | ID=MS.gene030715.t1.exon6;Parent=MS.gene030715.t1 |
| chr4.3 | CDS | 9361171 | 9361319 | 9361171 | ID=cds.MS.gene030715.t1;Parent=MS.gene030715.t1 |
| chr4.3 | exon | 9361396 | 9361591 | 9361396 | ID=MS.gene030715.t1.exon7;Parent=MS.gene030715.t1 |
| chr4.3 | CDS | 9361396 | 9361591 | 9361396 | ID=cds.MS.gene030715.t1;Parent=MS.gene030715.t1 |
| Gene Sequence |
| Protein sequence |
