Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030911.t1 | XP_003630006.2 | 88.5 | 296 | 34 | 0 | 1 | 296 | 1 | 296 | 2.60E-141 | 511.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030911.t1 | Q9SPE5 | 62.9 | 294 | 105 | 1 | 3 | 296 | 2 | 291 | 5.8e-102 | 372.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030911.t1 | G7L9K8 | 88.5 | 296 | 34 | 0 | 1 | 296 | 1 | 296 | 1.8e-141 | 511.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030911 | MS.gene035781 | PPI |
| MS.gene030911 | MS.gene73141 | PPI |
| MS.gene030911 | MS.gene064565 | PPI |
| MS.gene030911 | MS.gene70948 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030911.t1 | MTR_8g089250 | 94.595 | 296 | 16 | 0 | 1 | 296 | 1 | 296 | 0.0 | 581 |
| MS.gene030911.t1 | MTR_2g047110 | 75.000 | 296 | 74 | 0 | 1 | 296 | 1 | 296 | 1.97e-169 | 471 |
| MS.gene030911.t1 | MTR_2g047110 | 73.958 | 288 | 75 | 0 | 9 | 296 | 1 | 288 | 2.52e-161 | 450 |
| MS.gene030911.t1 | MTR_2g047110 | 75.966 | 233 | 56 | 0 | 64 | 296 | 1 | 233 | 4.21e-133 | 377 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030911.t1 | AT4G20410 | 67.687 | 294 | 91 | 1 | 3 | 296 | 2 | 291 | 6.40e-149 | 419 |
| MS.gene030911.t1 | AT4G20410 | 68.794 | 282 | 84 | 1 | 15 | 296 | 20 | 297 | 6.67e-144 | 407 |
Find 57 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCCTTGTTTATCAAATTT+TGG | 0.049590 | 4.3:+11141884 | None:intergenic |
| CAAAATCTCTGCAGATAATT+AGG | 0.213078 | 4.3:-11138957 | MS.gene030911:intron |
| TGTGATGCCTCTAGGATTGA+TGG | 0.311707 | 4.3:-11139322 | MS.gene030911:intron |
| TGTAGCCAATGGATTTAAAA+TGG | 0.321634 | 4.3:-11141472 | MS.gene030911:intron |
| CAGTGGTTCCTCTTCCTCTT+TGG | 0.347486 | 4.3:+11138882 | None:intergenic |
| CGTTGTGCCAGCAAGCTTCT+CGG | 0.379503 | 4.3:-11139277 | MS.gene030911:CDS |
| TATAGCTTAATAGCTTCTTC+AGG | 0.381788 | 4.3:+11140790 | None:intergenic |
| TGTCAAAGGAACTGAGAAAC+TGG | 0.404344 | 4.3:-11141022 | MS.gene030911:CDS |
| GAATGCACCGAGAAGCTTGC+TGG | 0.405480 | 4.3:+11139270 | None:intergenic |
| CAAGCTTCTCGGTGCATTCA+AGG | 0.424643 | 4.3:-11139266 | MS.gene030911:CDS |
| GCATCTTTCCTGCTCAGATT+AGG | 0.431392 | 4.3:-11140380 | MS.gene030911:CDS |
| AGACTACGAGAGAGCAAAAT+CGG | 0.431502 | 4.3:-11141445 | MS.gene030911:CDS |
| GAATTCCTTATGCAGTGCTT+TGG | 0.445067 | 4.3:-11140824 | MS.gene030911:intron |
| GCTTAATAGCTTCTTCAGGC+AGG | 0.451768 | 4.3:+11140794 | None:intergenic |
| ATCAAGATTTGAAATAATGC+TGG | 0.451968 | 4.3:+11139207 | None:intergenic |
| GCTTAAAGTCTTGAGCATAA+AGG | 0.461945 | 4.3:+11139593 | None:intergenic |
| CCCACATTCAATGTACAATT+CGG | 0.466157 | 4.3:+11140968 | None:intergenic |
| TTTGCAAGAGCATCTGCTGC+AGG | 0.470939 | 4.3:+11140936 | None:intergenic |
| GCAGCAGATGCTCTTGCAAA+GGG | 0.481654 | 4.3:-11140933 | MS.gene030911:CDS |
| TCACAAGGTGGAGTGCAGAT+TGG | 0.493692 | 4.3:-11141651 | MS.gene030911:CDS |
| GCTTGCAAGAAAATTGCCTA+TGG | 0.495077 | 4.3:-11138935 | MS.gene030911:CDS |
| AACAACTCTAAACCTTGGTC+TGG | 0.496107 | 4.3:+11140324 | None:intergenic |
| AGAGGATGGAGGAGAACAAA+TGG | 0.506299 | 4.3:-11140743 | MS.gene030911:CDS |
| CCGCTACGCCTAATCTGAGC+AGG | 0.513278 | 4.3:+11140372 | None:intergenic |
| GGCATATGAGAAAGCTTCAC+AGG | 0.519472 | 4.3:-11141424 | MS.gene030911:CDS |
| GGGAGATGTGAATGCATTGA+AGG | 0.522104 | 4.3:-11138914 | MS.gene030911:CDS |
| ATGCTCTTGCAAAGGGTGCC+CGG | 0.524931 | 4.3:-11140926 | MS.gene030911:intron |
| ATGTTCTTAGCTGCTTCCCA+AGG | 0.528638 | 4.3:+11141062 | None:intergenic |
| TGCAGCAGATGCTCTTGCAA+AGG | 0.531914 | 4.3:-11140934 | MS.gene030911:CDS |
| TATTTCAAATCTTGATCATG+TGG | 0.540231 | 4.3:-11139200 | MS.gene030911:intron |
| CTTAATAGCTTCTTCAGGCA+GGG | 0.549226 | 4.3:+11140795 | None:intergenic |
| ACTGTTCTTTATGAGCAAGC+TGG | 0.552724 | 4.3:-11141619 | MS.gene030911:intron |
| ATCTGCCGCCGCTATGTCAA+AGG | 0.553022 | 4.3:-11141036 | MS.gene030911:CDS |
| TGACACTACCAAAGAGGAAG+AGG | 0.555154 | 4.3:-11138890 | MS.gene030911:CDS |
| TGACAAGTAAACAAGACCTT+GGG | 0.556963 | 4.3:-11141078 | MS.gene030911:intron |
| GGTAGACAATAATTGCACTA+AGG | 0.561881 | 4.3:+11139614 | None:intergenic |
| TCCGAATTGTACATTGAATG+TGG | 0.565163 | 4.3:-11140969 | MS.gene030911:CDS |
| CAAAGAGGAAGAGGAACCAC+TGG | 0.566421 | 4.3:-11138881 | MS.gene030911:CDS |
| TCGATATAAATCTCTGACAT+CGG | 0.574231 | 4.3:+11140998 | None:intergenic |
| TGTACAATACTTGAAGAGGA+TGG | 0.589283 | 4.3:-11140757 | MS.gene030911:CDS |
| TCCCCAAAATTTGATAAACA+AGG | 0.589805 | 4.3:-11141887 | MS.gene030911:CDS |
| TGCTTGTACAATACTTGAAG+AGG | 0.590587 | 4.3:-11140761 | MS.gene030911:CDS |
| CCGAATTGTACATTGAATGT+GGG | 0.618939 | 4.3:-11140968 | MS.gene030911:CDS |
| CTTGCAAGAAAATTGCCTAT+GGG | 0.619288 | 4.3:-11138934 | MS.gene030911:CDS |
| GCTTGCTGGCACAACGACCA+TGG | 0.625920 | 4.3:+11139284 | None:intergenic |
| TCTCAGTTCCTTTGACATAG+CGG | 0.629588 | 4.3:+11141028 | None:intergenic |
| GGCAGCACGATATAGATCAA+AGG | 0.638241 | 4.3:+11140720 | None:intergenic |
| CTTCTCGGTGCATTCAAGGA+CGG | 0.641021 | 4.3:-11139262 | MS.gene030911:CDS |
| GAACAACACTTAGTTTCACA+AGG | 0.645780 | 4.3:-11141666 | MS.gene030911:CDS |
| AATGCATTCACATCTCCCAT+AGG | 0.647563 | 4.3:+11138919 | None:intergenic |
| CAGTTCCTTTGACATAGCGG+CGG | 0.659125 | 4.3:+11141031 | None:intergenic |
| GAAGGCTGACACTACCAAAG+AGG | 0.666246 | 4.3:-11138896 | MS.gene030911:CDS |
| TGCAACTAATAGCCAGACCA+AGG | 0.666286 | 4.3:-11140336 | MS.gene030911:intron |
| ACAATACTTGAAGAGGATGG+AGG | 0.668814 | 4.3:-11140754 | MS.gene030911:CDS |
| CAACACTTAGTTTCACAAGG+TGG | 0.672429 | 4.3:-11141663 | MS.gene030911:CDS |
| CCTGCTCAGATTAGGCGTAG+CGG | 0.677637 | 4.3:-11140372 | MS.gene030911:CDS |
| GCATATGAGAAAGCTTCACA+GGG | 0.686368 | 4.3:-11141423 | MS.gene030911:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATAATTAACAATTAAG+TGG | + | chr4.3:11139052-11139071 | None:intergenic | 10.0% |
| !! | TAGATTATATAAGTATAATA+CGG | + | chr4.3:11140686-11140705 | None:intergenic | 10.0% |
| !! | TATTATACTTATATAATCTA+GGG | - | chr4.3:11140686-11140705 | MS.gene030911:intron | 10.0% |
| !! | TTCATAAATAATAGAATATA+TGG | + | chr4.3:11141656-11141675 | None:intergenic | 10.0% |
| !!! | AAAAAAATGATTTTATATGT+TGG | - | chr4.3:11139890-11139909 | MS.gene030911:intron | 10.0% |
| !! | AAAATGTAAATTTCTAAACA+AGG | + | chr4.3:11140816-11140835 | None:intergenic | 15.0% |
| !! | AATGTTACTCTTTAATTATT+GGG | - | chr4.3:11141389-11141408 | MS.gene030911:intron | 15.0% |
| !! | ATAATAAATAAATCAGAACA+AGG | + | chr4.3:11139396-11139415 | None:intergenic | 15.0% |
| !! | ATTTATGCCAATTAATTATT+CGG | + | chr4.3:11141416-11141435 | None:intergenic | 15.0% |
| !! | CAATTATATAGTTTAATCAA+AGG | + | chr4.3:11139017-11139036 | None:intergenic | 15.0% |
| !! | GTATTATACTTATATAATCT+AGG | - | chr4.3:11140685-11140704 | MS.gene030911:intron | 15.0% |
| !!! | ATGTTTTATATAAACATTAG+CGG | + | chr4.3:11140066-11140085 | None:intergenic | 15.0% |
| !!! | TATATTCACATTTATTTTTC+AGG | + | chr4.3:11140100-11140119 | None:intergenic | 15.0% |
| !! | AAATATGTTGATACAATACT+AGG | - | chr4.3:11140535-11140554 | MS.gene030911:intron | 20.0% |
| !! | AAGAAAAGAATGATAGTTTA+AGG | + | chr4.3:11140586-11140605 | None:intergenic | 20.0% |
| !! | CTGAAAAATATAACATAAGA+TGG | - | chr4.3:11140205-11140224 | MS.gene030911:intron | 20.0% |
| !! | GAATGTTACTCTTTAATTAT+TGG | - | chr4.3:11141388-11141407 | MS.gene030911:intron | 20.0% |
| !! | TAAACTATATGTTTAGTTAC+CGG | + | chr4.3:11139858-11139877 | None:intergenic | 20.0% |
| !! | TAGTGATGTAATCTTAATTA+TGG | - | chr4.3:11141717-11141736 | MS.gene030911:intron | 20.0% |
| !! | TATTATTACTTTCATTGATG+TGG | - | chr4.3:11141769-11141788 | MS.gene030911:intron | 20.0% |
| !! | TCTAAATGAAAACAAATATG+TGG | - | chr4.3:11139231-11139250 | MS.gene030911:CDS | 20.0% |
| !! | TTCTCAACATGATTAAAAAT+TGG | - | chr4.3:11138986-11139005 | MS.gene030911:intron | 20.0% |
| !! | TTTAGCATAATAAAATACTC+TGG | + | chr4.3:11141092-11141111 | None:intergenic | 20.0% |
| !!! | ATTTTAATTAGCTATTTGCA+GGG | - | chr4.3:11140831-11140850 | MS.gene030911:intron | 20.0% |
| !!! | ATTTTTAATCATGTTGAGAA+AGG | + | chr4.3:11138986-11139005 | None:intergenic | 20.0% |
| ! | AAACTATATGTTTAGTTACC+GGG | + | chr4.3:11139857-11139876 | None:intergenic | 25.0% |
| ! | AAATCAGAACAAGGTAATTA+AGG | + | chr4.3:11139387-11139406 | None:intergenic | 25.0% |
| ! | AATGTGAATATACATTTCCA+TGG | - | chr4.3:11140108-11140127 | MS.gene030911:intron | 25.0% |
| ! | ACAGAAAATTTCTATGGTAA+AGG | + | chr4.3:11141325-11141344 | None:intergenic | 25.0% |
| ! | AGATCAACAGAAAATTTCTA+TGG | + | chr4.3:11141331-11141350 | None:intergenic | 25.0% |
| ! | ATAATAGCACAAGAAAAATG+AGG | + | chr4.3:11141242-11141261 | None:intergenic | 25.0% |
| ! | ATACATGAATGATAAAGGAA+AGG | + | chr4.3:11138928-11138947 | None:intergenic | 25.0% |
| ! | CAAAAAGGAATCTTTACTTT+AGG | + | chr4.3:11140493-11140512 | None:intergenic | 25.0% |
| ! | CAGAAAATTTCTATGGTAAA+GGG | + | chr4.3:11141324-11141343 | None:intergenic | 25.0% |
| ! | GATGAATACATGAATGATAA+AGG | + | chr4.3:11138933-11138952 | None:intergenic | 25.0% |
| ! | TAAGTAGTATAGATAGCTAA+TGG | - | chr4.3:11140749-11140768 | MS.gene030911:CDS | 25.0% |
| ! | TACATGAATGATAAAGGAAA+GGG | + | chr4.3:11138927-11138946 | None:intergenic | 25.0% |
| ! | TATAAATCACCATACATCAT+AGG | + | chr4.3:11140934-11140953 | None:intergenic | 25.0% |
| ! | TATTTCAAATCTTGATCATG+TGG | - | chr4.3:11141562-11141581 | MS.gene030911:intron | 25.0% |
| !! | ATCAAGATTTGAAATAATGC+TGG | + | chr4.3:11141558-11141577 | None:intergenic | 25.0% |
| !! | CTAAAGTAAAGATTCCTTTT+TGG | - | chr4.3:11140491-11140510 | MS.gene030911:intron | 25.0% |
| !!! | AATTTAGCTTTTAAGAACTG+AGG | + | chr4.3:11141613-11141632 | None:intergenic | 25.0% |
| !!! | AGCCTTGTTTATCAAATTTT+GGG | + | chr4.3:11138880-11138899 | None:intergenic | 25.0% |
| !!! | ATTTTTCTTGTGCTATTATG+TGG | - | chr4.3:11141243-11141262 | MS.gene030911:intron | 25.0% |
| !!! | CATTTTAATTAGCTATTTGC+AGG | - | chr4.3:11140830-11140849 | MS.gene030911:intron | 25.0% |
| !!! | GTTTCTTTTGGAAATAGAAT+TGG | - | chr4.3:11140268-11140287 | MS.gene030911:intron | 25.0% |
| !!! | TTTTAATTAGCTATTTGCAG+GGG | - | chr4.3:11140832-11140851 | MS.gene030911:intron | 25.0% |
| AAAATTTGCATCAGAGCAAA+TGG | + | chr4.3:11140321-11140340 | None:intergenic | 30.0% | |
| AATGAAAACAAATATGTGGC+TGG | - | chr4.3:11139235-11139254 | MS.gene030911:CDS | 30.0% | |
| ACACTATAGTAATAAGAGCT+TGG | + | chr4.3:11139273-11139292 | None:intergenic | 30.0% | |
| AGCTAATGGAATATGTATGA+TGG | - | chr4.3:11140763-11140782 | MS.gene030911:CDS | 30.0% | |
| ATTCTTGTCTAATAACAGCA+GGG | + | chr4.3:11140247-11140266 | None:intergenic | 30.0% | |
| ATTGACGGTTTATTCATTGT+AGG | - | chr4.3:11140714-11140733 | MS.gene030911:CDS | 30.0% | |
| ATTGGGACCGAATAATTAAT+TGG | - | chr4.3:11141406-11141425 | MS.gene030911:CDS | 30.0% | |
| ATTTACTCCTACTTTCCATA+TGG | - | chr4.3:11139068-11139087 | MS.gene030911:intron | 30.0% | |
| ATTTCCTCAAATTGCAATGT+TGG | + | chr4.3:11141026-11141045 | None:intergenic | 30.0% | |
| CAAAATCTCTGCAGATAATT+AGG | - | chr4.3:11141805-11141824 | MS.gene030911:intron | 30.0% | |
| GTTAAAACAACTCTAAACCT+TGG | + | chr4.3:11140446-11140465 | None:intergenic | 30.0% | |
| TAATCTAGGGACTAAATTGA+CGG | - | chr4.3:11140699-11140718 | MS.gene030911:CDS | 30.0% | |
| TATAGCTTAATAGCTTCTTC+AGG | + | chr4.3:11139975-11139994 | None:intergenic | 30.0% | |
| TATTACTATAGTGTAGCCAA+TGG | - | chr4.3:11139279-11139298 | MS.gene030911:CDS | 30.0% | |
| TATTCCAACATTGCAATTTG+AGG | - | chr4.3:11141019-11141038 | MS.gene030911:CDS | 30.0% | |
| TCCCCAAAATTTGATAAACA+AGG | - | chr4.3:11138875-11138894 | MS.gene030911:CDS | 30.0% | |
| TCGATATAAATCTCTGACAT+CGG | + | chr4.3:11139767-11139786 | None:intergenic | 30.0% | |
| TCTTCAAACTCAATATTCCA+TGG | + | chr4.3:11140128-11140147 | None:intergenic | 30.0% | |
| TGAAACATTCCTTAATACAC+AGG | - | chr4.3:11140347-11140366 | MS.gene030911:CDS | 30.0% | |
| TGTGTATTAAGGAATGTTTC+AGG | + | chr4.3:11140348-11140367 | None:intergenic | 30.0% | |
| TTGAAACATGATAGTCCATT+GGG | - | chr4.3:11139916-11139935 | MS.gene030911:intron | 30.0% | |
| ! | TAGACAAGAATGGTTTCTTT+TGG | - | chr4.3:11140256-11140275 | MS.gene030911:intron | 30.0% |
| ! | TGCAATTTGAGGAAATGTTT+TGG | - | chr4.3:11141030-11141049 | MS.gene030911:CDS | 30.0% |
| ! | TGTAGCCAATGGATTTAAAA+TGG | - | chr4.3:11139290-11139309 | MS.gene030911:CDS | 30.0% |
| ! | TTATTTGAGACTTTCGTCAA+TGG | - | chr4.3:11139561-11139580 | MS.gene030911:intron | 30.0% |
| !! | TTTGGCCATTTTAAATCCAT+TGG | + | chr4.3:11139298-11139317 | None:intergenic | 30.0% |
| !!! | CAGCCTTGTTTATCAAATTT+TGG | + | chr4.3:11138881-11138900 | None:intergenic | 30.0% |
| !!! | CTGCGGTAAAGATTTTTTTT+TGG | - | chr4.3:11140786-11140805 | MS.gene030911:CDS | 30.0% |
| !!! | GCCTTGTTTATCAAATTTTG+GGG | + | chr4.3:11138879-11138898 | None:intergenic | 30.0% |
| !!! | TAAGACATTGGTTTTAACAC+AGG | + | chr4.3:11139484-11139503 | None:intergenic | 30.0% |
| !!! | TTTCGTCAATGGTTTTAAAC+CGG | - | chr4.3:11139572-11139591 | MS.gene030911:CDS | 30.0% |
| AAGAAAACCATCAATCCTAG+AGG | + | chr4.3:11141450-11141469 | None:intergenic | 35.0% | |
| AAGCAAACCAGACATTTAAC+CGG | + | chr4.3:11139632-11139651 | None:intergenic | 35.0% | |
| ACACTGAAAGTAGACCAAAA+AGG | + | chr4.3:11140508-11140527 | None:intergenic | 35.0% | |
| ATCTGCATACCTGTGTATTA+AGG | + | chr4.3:11140359-11140378 | None:intergenic | 35.0% | |
| ATTAACTCAAACAAGGGAAG+TGG | + | chr4.3:11141059-11141078 | None:intergenic | 35.0% | |
| CAATGTCTTACAAACAGAAC+CGG | - | chr4.3:11139494-11139513 | MS.gene030911:intron | 35.0% | |
| CATAATTCAGATGCACAGTA+TGG | - | chr4.3:11140870-11140889 | MS.gene030911:intron | 35.0% | |
| CATTCTTGTCTAATAACAGC+AGG | + | chr4.3:11140248-11140267 | None:intergenic | 35.0% | |
| CCCACATTCAATGTACAATT+CGG | + | chr4.3:11139797-11139816 | None:intergenic | 35.0% | |
| CCGAATTGTACATTGAATGT+GGG | - | chr4.3:11139794-11139813 | MS.gene030911:intron | 35.0% | |
| CTGCTGTTATTAGACAAGAA+TGG | - | chr4.3:11140246-11140265 | MS.gene030911:intron | 35.0% | |
| CTTGAAACATGATAGTCCAT+TGG | - | chr4.3:11139915-11139934 | MS.gene030911:intron | 35.0% | |
| CTTGCAAGAAAATTGCCTAT+GGG | - | chr4.3:11141828-11141847 | MS.gene030911:intron | 35.0% | |
| GAACAACACTTAGTTTCACA+AGG | - | chr4.3:11139096-11139115 | MS.gene030911:intron | 35.0% | |
| GCTTAAAGTCTTGAGCATAA+AGG | + | chr4.3:11141172-11141191 | None:intergenic | 35.0% | |
| GGTAGACAATAATTGCACTA+AGG | + | chr4.3:11141151-11141170 | None:intergenic | 35.0% | |
| GTTCAACTAGTTGAATCATC+CGG | + | chr4.3:11139516-11139535 | None:intergenic | 35.0% | |
| TCCGAATTGTACATTGAATG+TGG | - | chr4.3:11139793-11139812 | MS.gene030911:intron | 35.0% | |
| TGACAAGTAAACAAGACCTT+GGG | - | chr4.3:11139684-11139703 | MS.gene030911:intron | 35.0% | |
| TGCTTGTACAATACTTGAAG+AGG | - | chr4.3:11140001-11140020 | MS.gene030911:intron | 35.0% | |
| TGTACAATACTTGAAGAGGA+TGG | - | chr4.3:11140005-11140024 | MS.gene030911:intron | 35.0% | |
| TTCTTGTCTAATAACAGCAG+GGG | + | chr4.3:11140246-11140265 | None:intergenic | 35.0% | |
| TTGACAAGTAAACAAGACCT+TGG | - | chr4.3:11139683-11139702 | MS.gene030911:intron | 35.0% | |
| ! | AAATGTTTTGTGATGCCTCT+AGG | - | chr4.3:11141432-11141451 | MS.gene030911:CDS | 35.0% |
| ! | TTGGTCTACTTTCAGTGTTT+TGG | - | chr4.3:11140510-11140529 | MS.gene030911:intron | 35.0% |
| !! | AAGGTCTTGTTTACTTGTCA+AGG | + | chr4.3:11139684-11139703 | None:intergenic | 35.0% |
| AACAACTCTAAACCTTGGTC+TGG | + | chr4.3:11140441-11140460 | None:intergenic | 40.0% | |
| AATGCATTCACATCTCCCAT+AGG | + | chr4.3:11141846-11141865 | None:intergenic | 40.0% | |
| ACAATACTTGAAGAGGATGG+AGG | - | chr4.3:11140008-11140027 | MS.gene030911:intron | 40.0% | |
| ACTGCATAAGGAATTCCCAA+TGG | + | chr4.3:11139934-11139953 | None:intergenic | 40.0% | |
| ACTGTGCATCTGAATTATGC+AGG | + | chr4.3:11140869-11140888 | None:intergenic | 40.0% | |
| ACTGTTCTTTATGAGCAAGC+TGG | - | chr4.3:11139143-11139162 | MS.gene030911:intron | 40.0% | |
| AGACTACGAGAGAGCAAAAT+CGG | - | chr4.3:11139317-11139336 | MS.gene030911:intron | 40.0% | |
| CAACACTTAGTTTCACAAGG+TGG | - | chr4.3:11139099-11139118 | MS.gene030911:intron | 40.0% | |
| CCGCACATTAACTCAAACAA+GGG | + | chr4.3:11141065-11141084 | None:intergenic | 40.0% | |
| CGGTTCTGTTTGTAAGACAT+TGG | + | chr4.3:11139496-11139515 | None:intergenic | 40.0% | |
| CTGAATTATGCAGGAAGAAC+TGG | + | chr4.3:11140860-11140879 | None:intergenic | 40.0% | |
| CTTAATAGCTTCTTCAGGCA+GGG | + | chr4.3:11139970-11139989 | None:intergenic | 40.0% | |
| GAATTCCTTATGCAGTGCTT+TGG | - | chr4.3:11139938-11139957 | MS.gene030911:intron | 40.0% | |
| GACATTTAACCGGCAAGTTA+TGG | + | chr4.3:11139622-11139641 | None:intergenic | 40.0% | |
| GCAGTGATTCCTATGATGTA+TGG | - | chr4.3:11140922-11140941 | MS.gene030911:intron | 40.0% | |
| GCATATGAGAAAGCTTCACA+GGG | - | chr4.3:11139339-11139358 | MS.gene030911:intron | 40.0% | |
| GCTTGCAAGAAAATTGCCTA+TGG | - | chr4.3:11141827-11141846 | MS.gene030911:intron | 40.0% | |
| TCATAGATAGCACCAGTTCA+CGG | + | chr4.3:11139538-11139557 | None:intergenic | 40.0% | |
| TCTCAGTTCCTTTGACATAG+CGG | + | chr4.3:11139737-11139756 | None:intergenic | 40.0% | |
| TGGAATATGTATGATGGCTG+CGG | - | chr4.3:11140769-11140788 | MS.gene030911:CDS | 40.0% | |
| TGTCAAAGGAACTGAGAAAC+TGG | - | chr4.3:11139740-11139759 | MS.gene030911:intron | 40.0% | |
| ! | CCCTTGTTTGAGTTAATGTG+CGG | - | chr4.3:11141062-11141081 | MS.gene030911:CDS | 40.0% |
| ! | GGTTTTCTTAGAAGTGACCA+TGG | - | chr4.3:11141461-11141480 | MS.gene030911:CDS | 40.0% |
| ! | TAACTTGCCGGTTAAATGTC+TGG | - | chr4.3:11139622-11139641 | MS.gene030911:CDS | 40.0% |
| ! | TCTGAAGCCATATGGAAAGT+AGG | + | chr4.3:11139078-11139097 | None:intergenic | 40.0% |
| ! | TTTTGCTCTCTCGTAGTCTT+TGG | + | chr4.3:11139316-11139335 | None:intergenic | 40.0% |
| !! | AGTGTTGTTCTGAAGCCATA+TGG | + | chr4.3:11139086-11139105 | None:intergenic | 40.0% |
| !! | ATCTTCCAAAGCACTGCATA+AGG | + | chr4.3:11139946-11139965 | None:intergenic | 40.0% |
| !! | TGAACTGGTGCTATCTATGA+CGG | - | chr4.3:11139538-11139557 | MS.gene030911:intron | 40.0% |
| ACCGGCAAGTTATGGTTCAA+AGG | + | chr4.3:11139614-11139633 | None:intergenic | 45.0% | |
| AGAGGATGGAGGAGAACAAA+TGG | - | chr4.3:11140019-11140038 | MS.gene030911:intron | 45.0% | |
| ATGTTCTTAGCTGCTTCCCA+AGG | + | chr4.3:11139703-11139722 | None:intergenic | 45.0% | |
| CAACTAGTTGAACCGTGAAC+TGG | - | chr4.3:11139523-11139542 | MS.gene030911:intron | 45.0% | |
| GCATCTTTCCTGCTCAGATT+AGG | - | chr4.3:11140382-11140401 | MS.gene030911:CDS | 45.0% | |
| GCCGCACATTAACTCAAACA+AGG | + | chr4.3:11141066-11141085 | None:intergenic | 45.0% | |
| GCTTAATAGCTTCTTCAGGC+AGG | + | chr4.3:11139971-11139990 | None:intergenic | 45.0% | |
| GGCAGCACGATATAGATCAA+AGG | + | chr4.3:11140045-11140064 | None:intergenic | 45.0% | |
| GGCATATGAGAAAGCTTCAC+AGG | - | chr4.3:11139338-11139357 | MS.gene030911:intron | 45.0% | |
| GGGAGATGTGAATGCATTGA+AGG | - | chr4.3:11141848-11141867 | MS.gene030911:intron | 45.0% | |
| TGACACTACCAAAGAGGAAG+AGG | - | chr4.3:11141872-11141891 | MS.gene030911:intron | 45.0% | |
| TGCAACTAATAGCCAGACCA+AGG | - | chr4.3:11140426-11140445 | MS.gene030911:intron | 45.0% | |
| ! | GCCTTTGAACCATAACTTGC+CGG | - | chr4.3:11139610-11139629 | MS.gene030911:CDS | 45.0% |
| ! | GTGAGATCATTTTCGTCCAG+TGG | + | chr4.3:11141900-11141919 | None:intergenic | 45.0% |
| !! | AGGCTTTAAACTGCTTGAGC+CGG | + | chr4.3:11139594-11139613 | None:intergenic | 45.0% |
| !! | TGTGATGCCTCTAGGATTGA+TGG | - | chr4.3:11141440-11141459 | MS.gene030911:CDS | 45.0% |
| !! | TATTATATTTATATAGTTTA+GGG | + | chr4.3:11140618-11140637 | None:intergenic | 5.0% |
| !! | TTATTATATTTATATAGTTT+AGG | + | chr4.3:11140619-11140638 | None:intergenic | 5.0% |
| CAAAGAGGAAGAGGAACCAC+TGG | - | chr4.3:11141881-11141900 | MS.gene030911:CDS | 50.0% | |
| CAGTGGTTCCTCTTCCTCTT+TGG | + | chr4.3:11141883-11141902 | None:intergenic | 50.0% | |
| CAGTTCCTTTGACATAGCGG+CGG | + | chr4.3:11139734-11139753 | None:intergenic | 50.0% | |
| GAAGGCTGACACTACCAAAG+AGG | - | chr4.3:11141866-11141885 | MS.gene030911:intron | 50.0% | |
| GCAGCAGATGCTCTTGCAAA+GGG | - | chr4.3:11139829-11139848 | MS.gene030911:intron | 50.0% | |
| TCACAAGGTGGAGTGCAGAT+TGG | - | chr4.3:11139111-11139130 | MS.gene030911:intron | 50.0% | |
| TCACTGAGCTGTTCACATGC+AGG | - | chr4.3:11141121-11141140 | MS.gene030911:intron | 50.0% | |
| TGCAGCAGATGCTCTTGCAA+AGG | - | chr4.3:11139828-11139847 | MS.gene030911:intron | 50.0% | |
| ! | CAAGCTTCTCGGTGCATTCA+AGG | - | chr4.3:11141496-11141515 | MS.gene030911:intron | 50.0% |
| ! | CTTCTCGGTGCATTCAAGGA+CGG | - | chr4.3:11141500-11141519 | MS.gene030911:intron | 50.0% |
| !! | TTTGCAAGAGCATCTGCTGC+AGG | + | chr4.3:11139829-11139848 | None:intergenic | 50.0% |
| ATCTGCCGCCGCTATGTCAA+AGG | - | chr4.3:11139726-11139745 | MS.gene030911:intron | 55.0% | |
| CCTGCTCAGATTAGGCGTAG+CGG | - | chr4.3:11140390-11140409 | MS.gene030911:CDS | 55.0% | |
| CGTTGTGCCAGCAAGCTTCT+CGG | - | chr4.3:11141485-11141504 | MS.gene030911:intron | 55.0% | |
| GAATGCACCGAGAAGCTTGC+TGG | + | chr4.3:11141495-11141514 | None:intergenic | 55.0% | |
| !! | ATGCTCTTGCAAAGGGTGCC+CGG | - | chr4.3:11139836-11139855 | MS.gene030911:intron | 55.0% |
| CCGCTACGCCTAATCTGAGC+AGG | + | chr4.3:11140393-11140412 | None:intergenic | 60.0% | |
| ! | GCTTGCTGGCACAACGACCA+TGG | + | chr4.3:11141481-11141500 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 11138861 | 11141923 | 11138861 | ID=MS.gene030911 |
| chr4.3 | mRNA | 11138861 | 11141923 | 11138861 | ID=MS.gene030911.t1;Parent=MS.gene030911 |
| chr4.3 | exon | 11141877 | 11141923 | 11141877 | ID=MS.gene030911.t1.exon1;Parent=MS.gene030911.t1 |
| chr4.3 | CDS | 11141877 | 11141923 | 11141877 | ID=cds.MS.gene030911.t1;Parent=MS.gene030911.t1 |
| chr4.3 | exon | 11141620 | 11141687 | 11141620 | ID=MS.gene030911.t1.exon2;Parent=MS.gene030911.t1 |
| chr4.3 | CDS | 11141620 | 11141687 | 11141620 | ID=cds.MS.gene030911.t1;Parent=MS.gene030911.t1 |
| chr4.3 | exon | 11141405 | 11141489 | 11141405 | ID=MS.gene030911.t1.exon3;Parent=MS.gene030911.t1 |
| chr4.3 | CDS | 11141405 | 11141489 | 11141405 | ID=cds.MS.gene030911.t1;Parent=MS.gene030911.t1 |
| chr4.3 | exon | 11140927 | 11141085 | 11140927 | ID=MS.gene030911.t1.exon4;Parent=MS.gene030911.t1 |
| chr4.3 | CDS | 11140927 | 11141085 | 11140927 | ID=cds.MS.gene030911.t1;Parent=MS.gene030911.t1 |
| chr4.3 | exon | 11140694 | 11140831 | 11140694 | ID=MS.gene030911.t1.exon5;Parent=MS.gene030911.t1 |
| chr4.3 | CDS | 11140694 | 11140831 | 11140694 | ID=cds.MS.gene030911.t1;Parent=MS.gene030911.t1 |
| chr4.3 | exon | 11140337 | 11140415 | 11140337 | ID=MS.gene030911.t1.exon6;Parent=MS.gene030911.t1 |
| chr4.3 | CDS | 11140337 | 11140415 | 11140337 | ID=cds.MS.gene030911.t1;Parent=MS.gene030911.t1 |
| chr4.3 | exon | 11139562 | 11139641 | 11139562 | ID=MS.gene030911.t1.exon7;Parent=MS.gene030911.t1 |
| chr4.3 | CDS | 11139562 | 11139641 | 11139562 | ID=cds.MS.gene030911.t1;Parent=MS.gene030911.t1 |
| chr4.3 | exon | 11139201 | 11139330 | 11139201 | ID=MS.gene030911.t1.exon8;Parent=MS.gene030911.t1 |
| chr4.3 | CDS | 11139201 | 11139330 | 11139201 | ID=cds.MS.gene030911.t1;Parent=MS.gene030911.t1 |
| chr4.3 | exon | 11138861 | 11138965 | 11138861 | ID=MS.gene030911.t1.exon9;Parent=MS.gene030911.t1 |
| chr4.3 | CDS | 11138861 | 11138965 | 11138861 | ID=cds.MS.gene030911.t1;Parent=MS.gene030911.t1 |
| Gene Sequence |
| Protein sequence |
