Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064565.t1 | AES70433.2 | 100 | 229 | 0 | 0 | 1 | 229 | 33 | 261 | 1.30E-116 | 429.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064565.t1 | Q94KK7 | 74.7 | 233 | 55 | 2 | 1 | 229 | 1 | 233 | 2.0e-86 | 320.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064565.t1 | I3S333 | 100.0 | 229 | 0 | 0 | 1 | 229 | 1 | 229 | 9.3e-117 | 429.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene064565 | -0.832728 | 8.01E-56 | -1.69E-46 |
| MS.gene051255 | MS.gene064565 | -0.842283 | 2.84E-58 | -1.69E-46 |
| MS.gene051387 | MS.gene064565 | -0.8218 | 3.33E-53 | -1.69E-46 |
| MS.gene051694 | MS.gene064565 | -0.804147 | 2.48E-49 | -1.69E-46 |
| MS.gene053107 | MS.gene064565 | -0.818831 | 1.60E-52 | -1.69E-46 |
| MS.gene053322 | MS.gene064565 | -0.8086 | 2.86E-50 | -1.69E-46 |
| MS.gene055412 | MS.gene064565 | -0.808507 | 2.99E-50 | -1.69E-46 |
| MS.gene055647 | MS.gene064565 | -0.802336 | 5.89E-49 | -1.69E-46 |
| MS.gene056452 | MS.gene064565 | -0.817175 | 3.78E-52 | -1.69E-46 |
| MS.gene056796 | MS.gene064565 | -0.8062 | 9.23E-50 | -1.69E-46 |
| MS.gene057011 | MS.gene064565 | -0.831677 | 1.46E-55 | -1.69E-46 |
| MS.gene058323 | MS.gene064565 | -0.82707 | 1.92E-54 | -1.69E-46 |
| MS.gene05883 | MS.gene064565 | -0.811623 | 6.38E-51 | -1.69E-46 |
| MS.gene060837 | MS.gene064565 | -0.805396 | 1.36E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene064565 | -0.805064 | 1.60E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47923 | MS.gene064565 | PPI |
| MS.gene064565 | MS.gene002374 | PPI |
| MS.gene75272 | MS.gene064565 | PPI |
| MS.gene064565 | MS.gene047508 | PPI |
| MS.gene064565 | MS.gene70862 | PPI |
| MS.gene064565 | MS.gene01347 | PPI |
| MS.gene064565 | MS.gene052542 | PPI |
| MS.gene47655 | MS.gene064565 | PPI |
| MS.gene76783 | MS.gene064565 | PPI |
| MS.gene064565 | MS.gene062010 | PPI |
| MS.gene064565 | MS.gene016966 | PPI |
| MS.gene33736 | MS.gene064565 | PPI |
| MS.gene030911 | MS.gene064565 | PPI |
| MS.gene01343 | MS.gene064565 | PPI |
| MS.gene32192 | MS.gene064565 | PPI |
| MS.gene064565 | MS.gene035217 | PPI |
| MS.gene064565 | MS.gene01756 | PPI |
| MS.gene064565 | MS.gene033936 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064565.t1 | MTR_8g031190 | 99.127 | 229 | 2 | 0 | 1 | 229 | 1 | 229 | 1.37e-168 | 463 |
| MS.gene064565.t1 | MTR_3g055200 | 100.000 | 229 | 0 | 0 | 1 | 229 | 33 | 261 | 6.64e-168 | 463 |
| MS.gene064565.t1 | MTR_5g094010 | 77.536 | 138 | 28 | 1 | 3 | 137 | 2 | 139 | 2.87e-72 | 218 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064565.t1 | AT1G79590 | 74.678 | 233 | 55 | 2 | 1 | 229 | 1 | 233 | 1.24e-123 | 350 |
| MS.gene064565.t1 | AT1G79590 | 74.678 | 233 | 55 | 2 | 1 | 229 | 1 | 233 | 1.24e-123 | 350 |
| MS.gene064565.t1 | AT1G79590 | 74.678 | 233 | 55 | 2 | 1 | 229 | 32 | 264 | 3.25e-123 | 350 |
| MS.gene064565.t1 | AT1G16240 | 72.414 | 232 | 61 | 2 | 1 | 229 | 1 | 232 | 6.74e-122 | 345 |
| MS.gene064565.t1 | AT1G16240 | 72.414 | 232 | 61 | 2 | 1 | 229 | 1 | 232 | 6.74e-122 | 345 |
| MS.gene064565.t1 | AT1G16240 | 72.414 | 232 | 61 | 2 | 1 | 229 | 1 | 232 | 6.74e-122 | 345 |
| MS.gene064565.t1 | AT1G16240 | 72.021 | 193 | 51 | 2 | 1 | 190 | 1 | 193 | 1.25e-94 | 276 |
| MS.gene064565.t1 | AT1G16230 | 56.545 | 191 | 80 | 2 | 1 | 189 | 1 | 190 | 5.30e-66 | 202 |
| MS.gene064565.t1 | AT1G16225 | 47.938 | 194 | 96 | 2 | 1 | 192 | 1 | 191 | 5.57e-50 | 162 |
| MS.gene064565.t1 | AT1G16225 | 47.647 | 170 | 84 | 2 | 25 | 192 | 1 | 167 | 6.70e-40 | 136 |
| MS.gene064565.t1 | AT1G16225 | 46.763 | 139 | 69 | 2 | 1 | 137 | 1 | 136 | 4.85e-32 | 114 |
| MS.gene064565.t1 | AT1G28490 | 25.911 | 247 | 154 | 10 | 1 | 222 | 1 | 243 | 3.69e-11 | 61.6 |
| MS.gene064565.t1 | AT1G28490 | 29.940 | 167 | 100 | 6 | 72 | 222 | 39 | 204 | 7.47e-11 | 60.1 |
| MS.gene064565.t1 | AT1G28490 | 29.940 | 167 | 100 | 6 | 72 | 222 | 33 | 198 | 7.75e-11 | 60.1 |
Find 52 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCATCTGGTTTAATTTC+TGG | 0.179304 | 3.1:-41233989 | None:intergenic |
| ACATGTCAAACTTTGCAAAT+AGG | 0.204618 | 3.1:+41233951 | MS.gene064565:CDS |
| GATGCATGACGTTGTGTTTC+TGG | 0.219951 | 3.1:-41233481 | None:intergenic |
| AAGAAGGAAAATCACAATAT+TGG | 0.253542 | 3.1:+41233510 | MS.gene064565:CDS |
| GGTTCTTGTCATATGGCTTC+TGG | 0.253840 | 3.1:+41235131 | MS.gene064565:CDS |
| AGAAGGAAAATCACAATATT+GGG | 0.265836 | 3.1:+41233511 | MS.gene064565:CDS |
| AGATGAGGGCCTTGAGAAAT+TGG | 0.280110 | 3.1:+41234161 | MS.gene064565:CDS |
| CATGTCAAACTTTGCAAATA+GGG | 0.294997 | 3.1:+41233952 | MS.gene064565:CDS |
| CATAATTCATTTCCTTCATC+TGG | 0.315930 | 3.1:+41233457 | MS.gene064565:CDS |
| CAGCTGAATACTCACTTTAC+AGG | 0.320411 | 3.1:-41233574 | None:intergenic |
| TGGGTTTGGTTCTTGTCATA+TGG | 0.348542 | 3.1:+41235124 | MS.gene064565:CDS |
| AGTGATTGGTATAGTGGGTT+TGG | 0.352039 | 3.1:+41235110 | MS.gene064565:CDS |
| ACAGTTCTGCTCATTGCATC+TGG | 0.359258 | 3.1:-41234001 | None:intergenic |
| ATTAGCAGTGATTGGTATAG+TGG | 0.391361 | 3.1:+41235104 | MS.gene064565:CDS |
| TGTTCAAAGTTGAAGCCATT+TGG | 0.405777 | 3.1:-41233931 | None:intergenic |
| GGGATTGCAAGCTATCTAAT+CGG | 0.411055 | 3.1:-41233537 | None:intergenic |
| ATGTAGATGTCACAGATTCT+CGG | 0.431976 | 3.1:+41234369 | MS.gene064565:CDS |
| TTCTTCAGACTCATGGTTGA+AGG | 0.435094 | 3.1:+41233381 | MS.gene064565:CDS |
| TTACAGGGAGCTTTGACAAA+AGG | 0.435213 | 3.1:-41233558 | None:intergenic |
| TACAGGGAGCTTTGACAAAA+GGG | 0.439839 | 3.1:-41233557 | None:intergenic |
| TTGGATAACAATGGACTTGT+TGG | 0.440074 | 3.1:+41234028 | MS.gene064565:CDS |
| GAGGTCAAAGGTTAACCAAA+TGG | 0.450048 | 3.1:+41233916 | MS.gene064565:CDS |
| TGTGTTTCTGGTCCAGATGA+AGG | 0.467807 | 3.1:-41233469 | None:intergenic |
| TGGCATCTTCTTCAGACTCA+TGG | 0.482083 | 3.1:+41233374 | MS.gene064565:CDS |
| AGGACAACCTTGCAAATTTG+AGG | 0.487031 | 3.1:+41233897 | MS.gene064565:CDS |
| CCTTGCAAATTTGAGGTCAA+AGG | 0.488877 | 3.1:+41233904 | MS.gene064565:CDS |
| GCAAATAGGGATAGTTTGCT+CGG | 0.495730 | 3.1:+41233965 | MS.gene064565:CDS |
| GGATTGCAAGCTATCTAATC+GGG | 0.534842 | 3.1:-41233536 | None:intergenic |
| GTCATGCATCTGCTATAAGA+AGG | 0.539643 | 3.1:+41233494 | MS.gene064565:CDS |
| ACAGAGAGTGCAGAAGAACT+TGG | 0.545697 | 3.1:+41235032 | MS.gene064565:intron |
| TTAGCAGTGATTGGTATAGT+GGG | 0.549125 | 3.1:+41235105 | MS.gene064565:CDS |
| CAAATAGGGATAGTTTGCTC+GGG | 0.550659 | 3.1:+41233966 | MS.gene064565:CDS |
| ATGTCACAGATTCTCGGCTG+AGG | 0.559797 | 3.1:+41234375 | MS.gene064565:CDS |
| ATGGACTTGTTGGTCTGCAA+CGG | 0.564781 | 3.1:+41234038 | MS.gene064565:CDS |
| AATGATAAATAGGTCTGAGA+AGG | 0.567578 | 3.1:+41233859 | MS.gene064565:intron |
| CGGTCTCCTCCAATTTCTCA+AGG | 0.568939 | 3.1:-41234170 | None:intergenic |
| TGCATGCTATTAGCAGTGAT+TGG | 0.573326 | 3.1:+41235096 | MS.gene064565:CDS |
| CCTTTGACCTCAAATTTGCA+AGG | 0.577028 | 3.1:-41233904 | None:intergenic |
| TTTCTAACAGAGCAAGATGA+GGG | 0.582199 | 3.1:+41234147 | MS.gene064565:intron |
| CTGCAACGGCAAGTTATGAA+AGG | 0.592264 | 3.1:+41234052 | MS.gene064565:CDS |
| TGAGGGCCTTGAGAAATTGG+AGG | 0.594430 | 3.1:+41234164 | MS.gene064565:CDS |
| AAGTACAAAACATATTGCGT+TGG | 0.595524 | 3.1:+41234197 | MS.gene064565:CDS |
| TGTCACAGATTCTCGGCTGA+GGG | 0.596979 | 3.1:+41234376 | MS.gene064565:CDS |
| GATGCAATGAGCAGAACTGT+TGG | 0.597248 | 3.1:+41234004 | MS.gene064565:CDS |
| TTAAACAAACGTACTAAGGG+TGG | 0.598231 | 3.1:+41235060 | MS.gene064565:CDS |
| AATGAGCAGAACTGTTGGCT+TGG | 0.609524 | 3.1:+41234009 | MS.gene064565:CDS |
| GAAGGAAAATCACAATATTG+GGG | 0.609732 | 3.1:+41233512 | MS.gene064565:CDS |
| AGCTGAATACTCACTTTACA+GGG | 0.612522 | 3.1:-41233573 | None:intergenic |
| GAGTCTGAAGAAGATGCCAT+TGG | 0.624414 | 3.1:-41233370 | None:intergenic |
| ACTGTTGGCTTGGATAACAA+TGG | 0.640180 | 3.1:+41234019 | MS.gene064565:CDS |
| GAAGGAGATGAATCGTCGCA+AGG | 0.666742 | 3.1:+41233877 | MS.gene064565:CDS |
| AAACTTGCTGATGATATCAG+TGG | 0.699595 | 3.1:+41233421 | MS.gene064565:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTATAATTATATGAAAA+TGG | - | chr3.1:41233728-41233747 | None:intergenic | 10.0% |
| !! | GAATTAAAAAAAAACTTAAA+AGG | - | chr3.1:41234945-41234964 | None:intergenic | 10.0% |
| !! | ATAATTATATGAAAATGGTA+AGG | - | chr3.1:41233723-41233742 | None:intergenic | 15.0% |
| !! | GGAAATATAATCATTAATTT+GGG | + | chr3.1:41234649-41234668 | MS.gene064565:intron | 15.0% |
| !! | TATAAATTATTGAATATCTG+TGG | + | chr3.1:41234810-41234829 | MS.gene064565:intron | 15.0% |
| !! | TGGAAATATAATCATTAATT+TGG | + | chr3.1:41234648-41234667 | MS.gene064565:intron | 15.0% |
| !!! | AAGATAAAATTGTCATTTTT+CGG | + | chr3.1:41234844-41234863 | MS.gene064565:intron | 15.0% |
| !!! | AATATGTTTTGTACTTAATA+CGG | - | chr3.1:41234193-41234212 | None:intergenic | 15.0% |
| !! | AAAAAAACTTAAAAGGGAAA+AGG | - | chr3.1:41234938-41234957 | None:intergenic | 20.0% |
| !! | CAAAATACTTATCAGAATTA+AGG | - | chr3.1:41234545-41234564 | None:intergenic | 20.0% |
| !! | TATCACAAAATAAACAGAAA+AGG | - | chr3.1:41235012-41235031 | None:intergenic | 20.0% |
| !! | TTAGCAAAGAAAATTAACAT+AGG | - | chr3.1:41234273-41234292 | None:intergenic | 20.0% |
| !! | TTCTTTGTCAAATGATAAAT+AGG | + | chr3.1:41233849-41233868 | MS.gene064565:intron | 20.0% |
| !!! | AAATAGATGTACCATATTTT+TGG | + | chr3.1:41234609-41234628 | MS.gene064565:intron | 20.0% |
| !!! | AATTTTAAACAAACGTACTA+AGG | + | chr3.1:41235056-41235075 | MS.gene064565:CDS | 20.0% |
| !!! | ATTTTAAACAAACGTACTAA+GGG | + | chr3.1:41235057-41235076 | MS.gene064565:CDS | 20.0% |
| !!! | TGAATCTTTTATTTTCTTCT+AGG | + | chr3.1:41234331-41234350 | MS.gene064565:intron | 20.0% |
| !!! | TTATTCTGAAAAATGTTTTG+TGG | + | chr3.1:41233679-41233698 | MS.gene064565:intron | 20.0% |
| ! | AAGAAGGAAAATCACAATAT+TGG | + | chr3.1:41233510-41233529 | MS.gene064565:CDS | 25.0% |
| ! | AGAAGGAAAATCACAATATT+GGG | + | chr3.1:41233511-41233530 | MS.gene064565:CDS | 25.0% |
| ! | CAAAGAAAATTAACATAGGA+TGG | - | chr3.1:41234269-41234288 | None:intergenic | 25.0% |
| ! | GTAAACTTACATAGTTAACT+AGG | + | chr3.1:41234781-41234800 | MS.gene064565:intron | 25.0% |
| !! | AAGTATTTTGTCTCAGAATT+AGG | + | chr3.1:41234555-41234574 | MS.gene064565:intron | 25.0% |
| !! | ATCTATTTGAAATGTCAGAT+TGG | - | chr3.1:41234597-41234616 | None:intergenic | 25.0% |
| !! | GAAATACATAATTTGTGCTT+TGG | + | chr3.1:41234103-41234122 | MS.gene064565:intron | 25.0% |
| !!! | AAAAAGCATCATATTACTAC+AGG | - | chr3.1:41233661-41233680 | None:intergenic | 25.0% |
| !!! | ATGTTGTTACTTTTTGTATG+AGG | + | chr3.1:41234734-41234753 | MS.gene064565:intron | 25.0% |
| AAATGGTAAGGAGATAGATA+TGG | - | chr3.1:41233711-41233730 | None:intergenic | 30.0% | |
| AAGTACAAAACATATTGCGT+TGG | + | chr3.1:41234197-41234216 | MS.gene064565:CDS | 30.0% | |
| AATGATAAATAGGTCTGAGA+AGG | + | chr3.1:41233859-41233878 | MS.gene064565:intron | 30.0% | |
| ACATGTCAAACTTTGCAAAT+AGG | + | chr3.1:41233951-41233970 | MS.gene064565:CDS | 30.0% | |
| CATAATTCATTTCCTTCATC+TGG | + | chr3.1:41233457-41233476 | MS.gene064565:CDS | 30.0% | |
| CATGTCAAACTTTGCAAATA+GGG | + | chr3.1:41233952-41233971 | MS.gene064565:CDS | 30.0% | |
| CGTACATCAAACCAAAAATA+TGG | - | chr3.1:41234623-41234642 | None:intergenic | 30.0% | |
| GAAGGAAAATCACAATATTG+GGG | + | chr3.1:41233512-41233531 | MS.gene064565:CDS | 30.0% | |
| TATATGCCTAAAGAAAGTTG+TGG | - | chr3.1:41234413-41234432 | None:intergenic | 30.0% | |
| TTGTTTACCCTGATTAAGAA+AGG | + | chr3.1:41233597-41233616 | MS.gene064565:intron | 30.0% | |
| ! | ATTGCATCTGGTTTAATTTC+TGG | - | chr3.1:41233992-41234011 | None:intergenic | 30.0% |
| !! | TGTGCTTTGGATATTGATTT+CGG | + | chr3.1:41234116-41234135 | MS.gene064565:intron | 30.0% |
| !!! | AAAATTGTCATTTTTCGGCT+AGG | + | chr3.1:41234849-41234868 | MS.gene064565:intron | 30.0% |
| !!! | TATTTTCTTCTAGGATGACT+TGG | + | chr3.1:41234340-41234359 | MS.gene064565:intron | 30.0% |
| AGCTGAATACTCACTTTACA+GGG | - | chr3.1:41233576-41233595 | None:intergenic | 35.0% | |
| ATGTAGATGTCACAGATTCT+CGG | + | chr3.1:41234369-41234388 | MS.gene064565:CDS | 35.0% | |
| ATTAGCAGTGATTGGTATAG+TGG | + | chr3.1:41235104-41235123 | MS.gene064565:CDS | 35.0% | |
| CTCTTACCACAACTTTCTTT+AGG | + | chr3.1:41234404-41234423 | MS.gene064565:intron | 35.0% | |
| TGTTCAAAGTTGAAGCCATT+TGG | - | chr3.1:41233934-41233953 | None:intergenic | 35.0% | |
| TTAAACAAACGTACTAAGGG+TGG | + | chr3.1:41235060-41235079 | MS.gene064565:CDS | 35.0% | |
| TTACCCTGATTAAGAAAGGA+TGG | + | chr3.1:41233601-41233620 | MS.gene064565:intron | 35.0% | |
| TTAGCAGTGATTGGTATAGT+GGG | + | chr3.1:41235105-41235124 | MS.gene064565:CDS | 35.0% | |
| TTTCTAACAGAGCAAGATGA+GGG | + | chr3.1:41234147-41234166 | MS.gene064565:intron | 35.0% | |
| ! | TTGGATAACAATGGACTTGT+TGG | + | chr3.1:41234028-41234047 | MS.gene064565:CDS | 35.0% |
| ! | TTGGTTTGATGTACGTTGTT+TGG | + | chr3.1:41234628-41234647 | MS.gene064565:intron | 35.0% |
| ! | TTTTCTAACAGAGCAAGATG+AGG | + | chr3.1:41234146-41234165 | MS.gene064565:intron | 35.0% |
| !! | AAACTTGCTGATGATATCAG+TGG | + | chr3.1:41233421-41233440 | MS.gene064565:CDS | 35.0% |
| AGCACCATCCTTTCTTAATC+AGG | - | chr3.1:41233608-41233627 | None:intergenic | 40.0% | |
| AGGACAACCTTGCAAATTTG+AGG | + | chr3.1:41233897-41233916 | MS.gene064565:CDS | 40.0% | |
| ATGTCAGATTGGTGAGTATG+TGG | - | chr3.1:41234586-41234605 | None:intergenic | 40.0% | |
| CAGCTGAATACTCACTTTAC+AGG | - | chr3.1:41233577-41233596 | None:intergenic | 40.0% | |
| CCTTTGACCTCAAATTTGCA+AGG | - | chr3.1:41233907-41233926 | None:intergenic | 40.0% | |
| GAGGTCAAAGGTTAACCAAA+TGG | + | chr3.1:41233916-41233935 | MS.gene064565:CDS | 40.0% | |
| GCACCATCCTTTCTTAATCA+GGG | - | chr3.1:41233607-41233626 | None:intergenic | 40.0% | |
| GGATTGCAAGCTATCTAATC+GGG | - | chr3.1:41233539-41233558 | None:intergenic | 40.0% | |
| GGGATTGCAAGCTATCTAAT+CGG | - | chr3.1:41233540-41233559 | None:intergenic | 40.0% | |
| GTCATGCATCTGCTATAAGA+AGG | + | chr3.1:41233494-41233513 | MS.gene064565:CDS | 40.0% | |
| TACTACAGGACATTGAGTTC+AGG | - | chr3.1:41233647-41233666 | None:intergenic | 40.0% | |
| TGCATGCTATTAGCAGTGAT+TGG | + | chr3.1:41235096-41235115 | MS.gene064565:CDS | 40.0% | |
| TGTCAGATTGGTGAGTATGT+GGG | - | chr3.1:41234585-41234604 | None:intergenic | 40.0% | |
| TTCTTCAGACTCATGGTTGA+AGG | + | chr3.1:41233381-41233400 | MS.gene064565:CDS | 40.0% | |
| ! | CCTTGCAAATTTGAGGTCAA+AGG | + | chr3.1:41233904-41233923 | MS.gene064565:CDS | 40.0% |
| ! | TACAGGGAGCTTTGACAAAA+GGG | - | chr3.1:41233560-41233579 | None:intergenic | 40.0% |
| ! | TGTCTTCTTTTGAGCTGCAA+AGG | + | chr3.1:41233802-41233821 | MS.gene064565:intron | 40.0% |
| ! | TTACAGGGAGCTTTGACAAA+AGG | - | chr3.1:41233561-41233580 | None:intergenic | 40.0% |
| !! | ACTGTTGGCTTGGATAACAA+TGG | + | chr3.1:41234019-41234038 | MS.gene064565:CDS | 40.0% |
| !! | AGTGATTGGTATAGTGGGTT+TGG | + | chr3.1:41235110-41235129 | MS.gene064565:CDS | 40.0% |
| !! | ATGGTGCTATTACAGCAATG+AGG | + | chr3.1:41233620-41233639 | MS.gene064565:intron | 40.0% |
| !! | CAAATAGGGATAGTTTGCTC+GGG | + | chr3.1:41233966-41233985 | MS.gene064565:CDS | 40.0% |
| !! | GCAAATAGGGATAGTTTGCT+CGG | + | chr3.1:41233965-41233984 | MS.gene064565:CDS | 40.0% |
| !! | GCTTTGGATATTGATTTCGG+AGG | + | chr3.1:41234119-41234138 | MS.gene064565:intron | 40.0% |
| !! | TGGGTTTGGTTCTTGTCATA+TGG | + | chr3.1:41235124-41235143 | MS.gene064565:CDS | 40.0% |
| !!! | ATTGTCATTTTTCGGCTAGG+TGG | + | chr3.1:41234852-41234871 | MS.gene064565:intron | 40.0% |
| !!! | TTGTCATTTTTCGGCTAGGT+GGG | + | chr3.1:41234853-41234872 | MS.gene064565:intron | 40.0% |
| ACAGTTCTGCTCATTGCATC+TGG | - | chr3.1:41234004-41234023 | None:intergenic | 45.0% | |
| AGATGAGGGCCTTGAGAAAT+TGG | + | chr3.1:41234161-41234180 | MS.gene064565:CDS | 45.0% | |
| ATGTCATTCATGGATCTGCG+GGG | + | chr3.1:41234701-41234720 | MS.gene064565:intron | 45.0% | |
| CATGTCATTCATGGATCTGC+GGG | + | chr3.1:41234700-41234719 | MS.gene064565:intron | 45.0% | |
| CCATGTCATTCATGGATCTG+CGG | + | chr3.1:41234699-41234718 | MS.gene064565:intron | 45.0% | |
| CTGCAACGGCAAGTTATGAA+AGG | + | chr3.1:41234052-41234071 | MS.gene064565:CDS | 45.0% | |
| GATGCAATGAGCAGAACTGT+TGG | + | chr3.1:41234004-41234023 | MS.gene064565:CDS | 45.0% | |
| GATGCATGACGTTGTGTTTC+TGG | - | chr3.1:41233484-41233503 | None:intergenic | 45.0% | |
| GGTTCTTGTCATATGGCTTC+TGG | + | chr3.1:41235131-41235150 | MS.gene064565:CDS | 45.0% | |
| GTTGTACGCCATGTCATTCA+TGG | + | chr3.1:41234691-41234710 | MS.gene064565:intron | 45.0% | |
| TGGCATCTTCTTCAGACTCA+TGG | + | chr3.1:41233374-41233393 | MS.gene064565:CDS | 45.0% | |
| ! | AATGAGCAGAACTGTTGGCT+TGG | + | chr3.1:41234009-41234028 | MS.gene064565:CDS | 45.0% |
| ! | ACAGAGAGTGCAGAAGAACT+TGG | + | chr3.1:41235032-41235051 | MS.gene064565:intron | 45.0% |
| !! | ATGGACTTGTTGGTCTGCAA+CGG | + | chr3.1:41234038-41234057 | MS.gene064565:CDS | 45.0% |
| !! | TGTGTTTCTGGTCCAGATGA+AGG | - | chr3.1:41233472-41233491 | None:intergenic | 45.0% |
| !!! | TGTCATTTTTCGGCTAGGTG+GGG | + | chr3.1:41234854-41234873 | MS.gene064565:intron | 45.0% |
| !! | AATTAAAAAAAAACTTAAAA+GGG | - | chr3.1:41234944-41234963 | None:intergenic | 5.0% |
| ATGTCACAGATTCTCGGCTG+AGG | + | chr3.1:41234375-41234394 | MS.gene064565:CDS | 50.0% | |
| CCGCAGATCCATGAATGACA+TGG | - | chr3.1:41234702-41234721 | None:intergenic | 50.0% | |
| CGGTCTCCTCCAATTTCTCA+AGG | - | chr3.1:41234173-41234192 | None:intergenic | 50.0% | |
| GAAGGAGATGAATCGTCGCA+AGG | + | chr3.1:41233877-41233896 | MS.gene064565:CDS | 50.0% | |
| TCATGGATCTGCGGGGATTT+GGG | + | chr3.1:41234708-41234727 | MS.gene064565:intron | 50.0% | |
| TGAGGGCCTTGAGAAATTGG+AGG | + | chr3.1:41234164-41234183 | MS.gene064565:CDS | 50.0% | |
| TGTCACAGATTCTCGGCTGA+GGG | + | chr3.1:41234376-41234395 | MS.gene064565:CDS | 50.0% | |
| TTCATGGATCTGCGGGGATT+TGG | + | chr3.1:41234707-41234726 | MS.gene064565:intron | 50.0% | |
| !!! | GTCATTTTTCGGCTAGGTGG+GGG | + | chr3.1:41234855-41234874 | MS.gene064565:intron | 50.0% |
| TTCGGCTAGGTGGGGGTGAT+GGG | + | chr3.1:41234862-41234881 | MS.gene064565:intron | 60.0% | |
| TTTCGGCTAGGTGGGGGTGA+TGG | + | chr3.1:41234861-41234880 | MS.gene064565:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 41233373 | 41235167 | 41233373 | ID=MS.gene064565 |
| chr3.1 | mRNA | 41233373 | 41235167 | 41233373 | ID=MS.gene064565.t1;Parent=MS.gene064565 |
| chr3.1 | exon | 41233373 | 41233581 | 41233373 | ID=MS.gene064565.t1.exon1;Parent=MS.gene064565.t1 |
| chr3.1 | CDS | 41233373 | 41233581 | 41233373 | ID=cds.MS.gene064565.t1;Parent=MS.gene064565.t1 |
| chr3.1 | exon | 41233871 | 41234073 | 41233871 | ID=MS.gene064565.t1.exon2;Parent=MS.gene064565.t1 |
| chr3.1 | CDS | 41233871 | 41234073 | 41233871 | ID=cds.MS.gene064565.t1;Parent=MS.gene064565.t1 |
| chr3.1 | exon | 41234157 | 41234257 | 41234157 | ID=MS.gene064565.t1.exon3;Parent=MS.gene064565.t1 |
| chr3.1 | CDS | 41234157 | 41234257 | 41234157 | ID=cds.MS.gene064565.t1;Parent=MS.gene064565.t1 |
| chr3.1 | exon | 41234353 | 41234397 | 41234353 | ID=MS.gene064565.t1.exon4;Parent=MS.gene064565.t1 |
| chr3.1 | CDS | 41234353 | 41234397 | 41234353 | ID=cds.MS.gene064565.t1;Parent=MS.gene064565.t1 |
| chr3.1 | exon | 41235036 | 41235167 | 41235036 | ID=MS.gene064565.t1.exon5;Parent=MS.gene064565.t1 |
| chr3.1 | CDS | 41235036 | 41235167 | 41235036 | ID=cds.MS.gene064565.t1;Parent=MS.gene064565.t1 |
| Gene Sequence |
| Protein sequence |
