Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70948.t1 | AES70433.2 | 99.6 | 229 | 1 | 0 | 1 | 229 | 33 | 261 | 2.90E-116 | 427.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70948.t1 | Q94KK7 | 74.2 | 233 | 56 | 2 | 1 | 229 | 1 | 233 | 4.5e-86 | 318.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70948.t1 | I3S333 | 99.6 | 229 | 1 | 0 | 1 | 229 | 1 | 229 | 2.1e-116 | 427.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene70948 | -0.848143 | 7.40E-60 | -1.69E-46 |
| MS.gene050301 | MS.gene70948 | -0.813146 | 2.97E-51 | -1.69E-46 |
| MS.gene051255 | MS.gene70948 | -0.834425 | 3.02E-56 | -1.69E-46 |
| MS.gene051877 | MS.gene70948 | -0.810456 | 1.14E-50 | -1.69E-46 |
| MS.gene052078 | MS.gene70948 | -0.805732 | 1.16E-49 | -1.69E-46 |
| MS.gene052485 | MS.gene70948 | -0.837077 | 6.43E-57 | -1.69E-46 |
| MS.gene054010 | MS.gene70948 | -0.834049 | 3.75E-56 | -1.69E-46 |
| MS.gene054011 | MS.gene70948 | -0.810425 | 1.16E-50 | -1.69E-46 |
| MS.gene054012 | MS.gene70948 | -0.828432 | 9.02E-55 | -1.69E-46 |
| MS.gene054013 | MS.gene70948 | -0.822025 | 2.95E-53 | -1.69E-46 |
| MS.gene055277 | MS.gene70948 | -0.8307 | 2.53E-55 | -1.69E-46 |
| MS.gene055390 | MS.gene70948 | -0.816733 | 4.75E-52 | -1.69E-46 |
| MS.gene055422 | MS.gene70948 | -0.81107 | 8.41E-51 | -1.69E-46 |
| MS.gene055428 | MS.gene70948 | -0.808121 | 3.62E-50 | -1.69E-46 |
| MS.gene055604 | MS.gene70948 | -0.817384 | 3.39E-52 | -1.69E-46 |
| MS.gene055971 | MS.gene70948 | -0.808612 | 2.84E-50 | -1.69E-46 |
| MS.gene056191 | MS.gene70948 | -0.831661 | 1.47E-55 | -1.69E-46 |
| MS.gene056410 | MS.gene70948 | -0.814603 | 1.42E-51 | -1.69E-46 |
| MS.gene056452 | MS.gene70948 | -0.80387 | 2.84E-49 | -1.69E-46 |
| MS.gene056796 | MS.gene70948 | -0.835875 | 1.30E-56 | -1.69E-46 |
| MS.gene056902 | MS.gene70948 | -0.816471 | 5.44E-52 | -1.69E-46 |
| MS.gene056931 | MS.gene70948 | -0.810214 | 1.29E-50 | -1.69E-46 |
| MS.gene056933 | MS.gene70948 | -0.811158 | 8.05E-51 | -1.69E-46 |
| MS.gene056935 | MS.gene70948 | -0.810971 | 8.84E-51 | -1.69E-46 |
| MS.gene057749 | MS.gene70948 | -0.806026 | 1.00E-49 | -1.69E-46 |
| MS.gene057823 | MS.gene70948 | -0.812616 | 3.88E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene70948 | -0.812109 | 5.00E-51 | -1.69E-46 |
| MS.gene05811 | MS.gene70948 | -0.845217 | 4.66E-59 | -1.69E-46 |
| MS.gene058293 | MS.gene70948 | -0.827656 | 1.39E-54 | -1.69E-46 |
| MS.gene058660 | MS.gene70948 | -0.822025 | 2.95E-53 | -1.69E-46 |
| MS.gene05907 | MS.gene70948 | -0.825116 | 5.59E-54 | -1.69E-46 |
| MS.gene059294 | MS.gene70948 | -0.821818 | 3.30E-53 | -1.69E-46 |
| MS.gene059676 | MS.gene70948 | -0.807491 | 4.93E-50 | -1.69E-46 |
| MS.gene059688 | MS.gene70948 | -0.801298 | 9.62E-49 | -1.69E-46 |
| MS.gene059692 | MS.gene70948 | -0.800993 | 1.11E-48 | -1.69E-46 |
| MS.gene059695 | MS.gene70948 | -0.808377 | 3.19E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene70948 | -0.838378 | 2.98E-57 | -1.69E-46 |
| MS.gene059974 | MS.gene70948 | -0.804195 | 2.43E-49 | -1.69E-46 |
| MS.gene060559 | MS.gene70948 | -0.82048 | 6.71E-53 | -1.69E-46 |
| MS.gene060837 | MS.gene70948 | -0.807139 | 5.85E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene32192 | MS.gene70948 | PPI |
| MS.gene70948 | MS.gene035217 | PPI |
| MS.gene70948 | MS.gene01756 | PPI |
| MS.gene75272 | MS.gene70948 | PPI |
| MS.gene70948 | MS.gene70862 | PPI |
| MS.gene70948 | MS.gene033936 | PPI |
| MS.gene70948 | MS.gene01347 | PPI |
| MS.gene47655 | MS.gene70948 | PPI |
| MS.gene76783 | MS.gene70948 | PPI |
| MS.gene33736 | MS.gene70948 | PPI |
| MS.gene01343 | MS.gene70948 | PPI |
| MS.gene70948 | MS.gene062010 | PPI |
| MS.gene70948 | MS.gene016966 | PPI |
| MS.gene047508 | MS.gene70948 | PPI |
| MS.gene70948 | MS.gene052542 | PPI |
| MS.gene002374 | MS.gene70948 | PPI |
| MS.gene47923 | MS.gene70948 | PPI |
| MS.gene030911 | MS.gene70948 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70948.t1 | MTR_8g031190 | 98.690 | 229 | 3 | 0 | 1 | 229 | 1 | 229 | 4.99e-168 | 462 |
| MS.gene70948.t1 | MTR_3g055200 | 99.563 | 229 | 1 | 0 | 1 | 229 | 33 | 261 | 2.59e-167 | 461 |
| MS.gene70948.t1 | MTR_5g094010 | 77.536 | 138 | 28 | 1 | 3 | 137 | 2 | 139 | 2.84e-72 | 218 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70948.t1 | AT1G79590 | 74.249 | 233 | 56 | 2 | 1 | 229 | 1 | 233 | 4.05e-123 | 348 |
| MS.gene70948.t1 | AT1G79590 | 74.249 | 233 | 56 | 2 | 1 | 229 | 1 | 233 | 4.05e-123 | 348 |
| MS.gene70948.t1 | AT1G79590 | 74.249 | 233 | 56 | 2 | 1 | 229 | 32 | 264 | 1.62e-122 | 348 |
| MS.gene70948.t1 | AT1G16240 | 71.983 | 232 | 62 | 2 | 1 | 229 | 1 | 232 | 2.59e-121 | 344 |
| MS.gene70948.t1 | AT1G16240 | 71.983 | 232 | 62 | 2 | 1 | 229 | 1 | 232 | 2.59e-121 | 344 |
| MS.gene70948.t1 | AT1G16240 | 71.983 | 232 | 62 | 2 | 1 | 229 | 1 | 232 | 2.59e-121 | 344 |
| MS.gene70948.t1 | AT1G16240 | 72.021 | 193 | 51 | 2 | 1 | 190 | 1 | 193 | 1.20e-94 | 276 |
| MS.gene70948.t1 | AT1G16230 | 56.545 | 191 | 80 | 2 | 1 | 189 | 1 | 190 | 5.66e-66 | 202 |
| MS.gene70948.t1 | AT1G16225 | 47.938 | 194 | 96 | 2 | 1 | 192 | 1 | 191 | 6.07e-50 | 162 |
| MS.gene70948.t1 | AT1G16225 | 47.647 | 170 | 84 | 2 | 25 | 192 | 1 | 167 | 7.23e-40 | 136 |
| MS.gene70948.t1 | AT1G16225 | 46.763 | 139 | 69 | 2 | 1 | 137 | 1 | 136 | 4.45e-32 | 114 |
Find 53 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCATCTGGTTTAATTTC+TGG | 0.179304 | 3.3:-44681363 | None:intergenic |
| ACATGTCAAACTTTGCAAAT+AGG | 0.204618 | 3.3:+44681325 | MS.gene70948:CDS |
| GATGCATGACGTTGTGTTTC+TGG | 0.219951 | 3.3:-44680855 | None:intergenic |
| AAGAAGGAAAATCACAATAT+TGG | 0.253542 | 3.3:+44680884 | MS.gene70948:CDS |
| GGTTCTTGTCATATGGCTTC+TGG | 0.253840 | 3.3:+44682510 | MS.gene70948:CDS |
| AGAAGGAAAATCACAATATT+GGG | 0.265836 | 3.3:+44680885 | MS.gene70948:CDS |
| TGCATGCTATTAGCAGTTAT+TGG | 0.270965 | 3.3:+44682475 | MS.gene70948:CDS |
| AGATGAGGGCCTTGAGAAAT+TGG | 0.280110 | 3.3:+44681535 | MS.gene70948:CDS |
| CATGTCAAACTTTGCAAATA+GGG | 0.294997 | 3.3:+44681326 | MS.gene70948:CDS |
| CATAATTCATTTCCTTCATC+TGG | 0.315930 | 3.3:+44680831 | MS.gene70948:CDS |
| CAGCTGAATACTCACTTTAC+AGG | 0.320411 | 3.3:-44680948 | None:intergenic |
| ACAGTTCTGCTCATTGCATC+TGG | 0.359258 | 3.3:-44681375 | None:intergenic |
| AGTTATTGGTATGGTGGGTT+TGG | 0.365520 | 3.3:+44682489 | MS.gene70948:CDS |
| TGGGTTTGGTTCTTGTCATA+TGG | 0.402345 | 3.3:+44682503 | MS.gene70948:CDS |
| TGTTCAAAGTTGAAGCCATT+TGG | 0.405777 | 3.3:-44681305 | None:intergenic |
| GGGATTGCAAGCTATCTAAT+CGG | 0.411055 | 3.3:-44680911 | None:intergenic |
| ATGTAGATGTCACAGATTCT+CGG | 0.431976 | 3.3:+44681743 | MS.gene70948:CDS |
| TTCTTCAGACTCATGGTTGA+AGG | 0.435094 | 3.3:+44680755 | MS.gene70948:CDS |
| TTACAGGGAGCTTTGACAAA+AGG | 0.435213 | 3.3:-44680932 | None:intergenic |
| TACAGGGAGCTTTGACAAAA+GGG | 0.439839 | 3.3:-44680931 | None:intergenic |
| TTGGATAACAATGGACTTGT+TGG | 0.440074 | 3.3:+44681402 | MS.gene70948:CDS |
| GAGGTCAAAGGTTAACCAAA+TGG | 0.450048 | 3.3:+44681290 | MS.gene70948:CDS |
| TGTGTTTCTGGTCCAGATGA+AGG | 0.467807 | 3.3:-44680843 | None:intergenic |
| ATTAGCAGTTATTGGTATGG+TGG | 0.475283 | 3.3:+44682483 | MS.gene70948:CDS |
| TGGCATCTTCTTCAGACTCA+TGG | 0.482083 | 3.3:+44680748 | MS.gene70948:CDS |
| AGGACAACCTTGCAAATTTG+AGG | 0.487031 | 3.3:+44681271 | MS.gene70948:CDS |
| CCTTGCAAATTTGAGGTCAA+AGG | 0.488877 | 3.3:+44681278 | MS.gene70948:CDS |
| TTAGCAGTTATTGGTATGGT+GGG | 0.489437 | 3.3:+44682484 | MS.gene70948:CDS |
| GCAAATAGGGATAGTTTGCT+CGG | 0.495730 | 3.3:+44681339 | MS.gene70948:CDS |
| GCTATTAGCAGTTATTGGTA+TGG | 0.514333 | 3.3:+44682480 | MS.gene70948:CDS |
| GGATTGCAAGCTATCTAATC+GGG | 0.534842 | 3.3:-44680910 | None:intergenic |
| GTCATGCATCTGCTATAAGA+AGG | 0.539643 | 3.3:+44680868 | MS.gene70948:CDS |
| ACAGAGAGTGCAGAAGAACT+TGG | 0.545697 | 3.3:+44682411 | MS.gene70948:intron |
| CAAATAGGGATAGTTTGCTC+GGG | 0.550659 | 3.3:+44681340 | MS.gene70948:CDS |
| ATGTCACAGATTCTCGGCTG+AGG | 0.559797 | 3.3:+44681749 | MS.gene70948:CDS |
| ATGGACTTGTTGGTCTGCAA+CGG | 0.564781 | 3.3:+44681412 | MS.gene70948:CDS |
| AATGATAAATAGGTCTGAGA+AGG | 0.567578 | 3.3:+44681233 | MS.gene70948:intron |
| CGGTCTCCTCCAATTTCTCA+AGG | 0.568939 | 3.3:-44681544 | None:intergenic |
| CCTTTGACCTCAAATTTGCA+AGG | 0.577028 | 3.3:-44681278 | None:intergenic |
| TTTCTAACAGAGCAAGATGA+GGG | 0.582199 | 3.3:+44681521 | MS.gene70948:intron |
| CTGCAACGGCAAGTTATGAA+AGG | 0.592264 | 3.3:+44681426 | MS.gene70948:CDS |
| TGAGGGCCTTGAGAAATTGG+AGG | 0.594430 | 3.3:+44681538 | MS.gene70948:CDS |
| AAGTACAAAACATATTGCGT+TGG | 0.595524 | 3.3:+44681571 | MS.gene70948:CDS |
| TGTCACAGATTCTCGGCTGA+GGG | 0.596979 | 3.3:+44681750 | MS.gene70948:CDS |
| GATGCAATGAGCAGAACTGT+TGG | 0.597248 | 3.3:+44681378 | MS.gene70948:CDS |
| TTAAACAAACGTACTAAGGG+TGG | 0.598231 | 3.3:+44682439 | MS.gene70948:CDS |
| AATGAGCAGAACTGTTGGCT+TGG | 0.609524 | 3.3:+44681383 | MS.gene70948:CDS |
| GAAGGAAAATCACAATATTG+GGG | 0.609732 | 3.3:+44680886 | MS.gene70948:CDS |
| AGCTGAATACTCACTTTACA+GGG | 0.612522 | 3.3:-44680947 | None:intergenic |
| GAGTCTGAAGAAGATGCCAT+TGG | 0.624414 | 3.3:-44680744 | None:intergenic |
| ACTGTTGGCTTGGATAACAA+TGG | 0.640180 | 3.3:+44681393 | MS.gene70948:CDS |
| GAAGGAGATGAATCGTCGCA+AGG | 0.666742 | 3.3:+44681251 | MS.gene70948:CDS |
| AAACTTGCTGATGATATCAG+TGG | 0.699595 | 3.3:+44680795 | MS.gene70948:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTATAATTATATGAAAA+TGG | - | chr3.3:44681102-44681121 | None:intergenic | 10.0% |
| !! | ATAATTATATGAAAATGGTA+AGG | - | chr3.3:44681097-44681116 | None:intergenic | 15.0% |
| !! | GGAAATATAATCATTAATTT+GGG | + | chr3.3:44682023-44682042 | MS.gene70948:intron | 15.0% |
| !! | TATAAATTATTGAATATCTG+TGG | + | chr3.3:44682184-44682203 | MS.gene70948:intron | 15.0% |
| !! | TGGAAATATAATCATTAATT+TGG | + | chr3.3:44682022-44682041 | MS.gene70948:intron | 15.0% |
| !!! | AAGATAAAATTGTCATTTTT+CGG | + | chr3.3:44682218-44682237 | MS.gene70948:intron | 15.0% |
| !!! | AATATGTTTTGTACTTAATA+CGG | - | chr3.3:44681567-44681586 | None:intergenic | 15.0% |
| !! | AAAAAAACTTAAAAGGGAAA+AGG | - | chr3.3:44682312-44682331 | None:intergenic | 20.0% |
| !! | CAAAATACTTATCAGAATTA+AGG | - | chr3.3:44681919-44681938 | None:intergenic | 20.0% |
| !! | TTAGCAAAGAAAATTAACAT+AGG | - | chr3.3:44681647-44681666 | None:intergenic | 20.0% |
| !! | TTCTTTGTCAAATGATAAAT+AGG | + | chr3.3:44681223-44681242 | MS.gene70948:intron | 20.0% |
| !!! | AAATAGATGTACCATATTTT+TGG | + | chr3.3:44681983-44682002 | MS.gene70948:intron | 20.0% |
| !!! | AATTTTAAACAAACGTACTA+AGG | + | chr3.3:44682435-44682454 | MS.gene70948:CDS | 20.0% |
| !!! | ATTTTAAACAAACGTACTAA+GGG | + | chr3.3:44682436-44682455 | MS.gene70948:CDS | 20.0% |
| !!! | TGAATCTTTTATTTTCTTCT+AGG | + | chr3.3:44681705-44681724 | MS.gene70948:intron | 20.0% |
| !!! | TTATTCTGAAAAATGTTTTG+TGG | + | chr3.3:44681053-44681072 | MS.gene70948:intron | 20.0% |
| ! | AAGAAGGAAAATCACAATAT+TGG | + | chr3.3:44680884-44680903 | MS.gene70948:CDS | 25.0% |
| ! | AGAAGGAAAATCACAATATT+GGG | + | chr3.3:44680885-44680904 | MS.gene70948:CDS | 25.0% |
| ! | CAAAGAAAATTAACATAGGA+TGG | - | chr3.3:44681643-44681662 | None:intergenic | 25.0% |
| ! | GTAAACTTACATAGTTAACT+AGG | + | chr3.3:44682155-44682174 | MS.gene70948:intron | 25.0% |
| ! | TATCACAAAAGAAACAGAAA+AGG | - | chr3.3:44682391-44682410 | None:intergenic | 25.0% |
| !! | AAGTATTTTGTCTCAGAATT+AGG | + | chr3.3:44681929-44681948 | MS.gene70948:intron | 25.0% |
| !! | ATCTATTTGAAATGTCAGAT+TGG | - | chr3.3:44681971-44681990 | None:intergenic | 25.0% |
| !!! | AAAAAGCATCATATTACTAC+AGG | - | chr3.3:44681035-44681054 | None:intergenic | 25.0% |
| AAATGGTAAGGAGATAGATA+TGG | - | chr3.3:44681085-44681104 | None:intergenic | 30.0% | |
| AAGTACAAAACATATTGCGT+TGG | + | chr3.3:44681571-44681590 | MS.gene70948:CDS | 30.0% | |
| AATGATAAATAGGTCTGAGA+AGG | + | chr3.3:44681233-44681252 | MS.gene70948:intron | 30.0% | |
| ACATGTCAAACTTTGCAAAT+AGG | + | chr3.3:44681325-44681344 | MS.gene70948:CDS | 30.0% | |
| CATAATTCATTTCCTTCATC+TGG | + | chr3.3:44680831-44680850 | MS.gene70948:CDS | 30.0% | |
| CATGTCAAACTTTGCAAATA+GGG | + | chr3.3:44681326-44681345 | MS.gene70948:CDS | 30.0% | |
| CGTACATCAAACCAAAAATA+TGG | - | chr3.3:44681997-44682016 | None:intergenic | 30.0% | |
| GAAATACATAATTCGTGCTT+TGG | + | chr3.3:44681477-44681496 | MS.gene70948:intron | 30.0% | |
| GAAGGAAAATCACAATATTG+GGG | + | chr3.3:44680886-44680905 | MS.gene70948:CDS | 30.0% | |
| TATATGCCTAAAGAAAGTTG+TGG | - | chr3.3:44681787-44681806 | None:intergenic | 30.0% | |
| TTGTTTACCCTGATTAAGAA+AGG | + | chr3.3:44680971-44680990 | MS.gene70948:intron | 30.0% | |
| ! | ATTGCATCTGGTTTAATTTC+TGG | - | chr3.3:44681366-44681385 | None:intergenic | 30.0% |
| !!! | AAAATTGTCATTTTTCGGCT+AGG | + | chr3.3:44682223-44682242 | MS.gene70948:intron | 30.0% |
| !!! | TATTTTCTTCTAGGATGACT+TGG | + | chr3.3:44681714-44681733 | MS.gene70948:intron | 30.0% |
| AGCTGAATACTCACTTTACA+GGG | - | chr3.3:44680950-44680969 | None:intergenic | 35.0% | |
| ATGTAGATGTCACAGATTCT+CGG | + | chr3.3:44681743-44681762 | MS.gene70948:CDS | 35.0% | |
| ATTAGCAGTTATTGGTATGG+TGG | + | chr3.3:44682483-44682502 | MS.gene70948:CDS | 35.0% | |
| CTCTTACCACAACTTTCTTT+AGG | + | chr3.3:44681778-44681797 | MS.gene70948:intron | 35.0% | |
| GCTATTAGCAGTTATTGGTA+TGG | + | chr3.3:44682480-44682499 | MS.gene70948:CDS | 35.0% | |
| TGCATGCTATTAGCAGTTAT+TGG | + | chr3.3:44682475-44682494 | MS.gene70948:CDS | 35.0% | |
| TGTTCAAAGTTGAAGCCATT+TGG | - | chr3.3:44681308-44681327 | None:intergenic | 35.0% | |
| TTAAACAAACGTACTAAGGG+TGG | + | chr3.3:44682439-44682458 | MS.gene70948:CDS | 35.0% | |
| TTACCCTGATTAAGAAAGGA+TGG | + | chr3.3:44680975-44680994 | MS.gene70948:intron | 35.0% | |
| TTAGCAGTTATTGGTATGGT+GGG | + | chr3.3:44682484-44682503 | MS.gene70948:CDS | 35.0% | |
| TTTCTAACAGAGCAAGATGA+GGG | + | chr3.3:44681521-44681540 | MS.gene70948:intron | 35.0% | |
| ! | TTGGATAACAATGGACTTGT+TGG | + | chr3.3:44681402-44681421 | MS.gene70948:CDS | 35.0% |
| ! | TTGGTTTGATGTACGTTGTT+TGG | + | chr3.3:44682002-44682021 | MS.gene70948:intron | 35.0% |
| ! | TTTTCTAACAGAGCAAGATG+AGG | + | chr3.3:44681520-44681539 | MS.gene70948:intron | 35.0% |
| !! | AAACTTGCTGATGATATCAG+TGG | + | chr3.3:44680795-44680814 | MS.gene70948:CDS | 35.0% |
| !! | CGTGCTTTGGATATTGATTT+CGG | + | chr3.3:44681490-44681509 | MS.gene70948:intron | 35.0% |
| AGCACCATCCTTTCTTAATC+AGG | - | chr3.3:44680982-44681001 | None:intergenic | 40.0% | |
| AGGACAACCTTGCAAATTTG+AGG | + | chr3.3:44681271-44681290 | MS.gene70948:CDS | 40.0% | |
| ATGTCAGATTGGTGAGTATG+TGG | - | chr3.3:44681960-44681979 | None:intergenic | 40.0% | |
| CAGCTGAATACTCACTTTAC+AGG | - | chr3.3:44680951-44680970 | None:intergenic | 40.0% | |
| CCTTTGACCTCAAATTTGCA+AGG | - | chr3.3:44681281-44681300 | None:intergenic | 40.0% | |
| GAGGTCAAAGGTTAACCAAA+TGG | + | chr3.3:44681290-44681309 | MS.gene70948:CDS | 40.0% | |
| GCACCATCCTTTCTTAATCA+GGG | - | chr3.3:44680981-44681000 | None:intergenic | 40.0% | |
| GGATTGCAAGCTATCTAATC+GGG | - | chr3.3:44680913-44680932 | None:intergenic | 40.0% | |
| GGGATTGCAAGCTATCTAAT+CGG | - | chr3.3:44680914-44680933 | None:intergenic | 40.0% | |
| GTCATGCATCTGCTATAAGA+AGG | + | chr3.3:44680868-44680887 | MS.gene70948:CDS | 40.0% | |
| TACTACAGGACATTGAGTTC+AGG | - | chr3.3:44681021-44681040 | None:intergenic | 40.0% | |
| TGTCAGATTGGTGAGTATGT+GGG | - | chr3.3:44681959-44681978 | None:intergenic | 40.0% | |
| TTCTTCAGACTCATGGTTGA+AGG | + | chr3.3:44680755-44680774 | MS.gene70948:CDS | 40.0% | |
| ! | CCTTGCAAATTTGAGGTCAA+AGG | + | chr3.3:44681278-44681297 | MS.gene70948:CDS | 40.0% |
| ! | TACAGGGAGCTTTGACAAAA+GGG | - | chr3.3:44680934-44680953 | None:intergenic | 40.0% |
| ! | TGTCTTCTTTTGAGCTGCAA+AGG | + | chr3.3:44681176-44681195 | MS.gene70948:intron | 40.0% |
| ! | TTACAGGGAGCTTTGACAAA+AGG | - | chr3.3:44680935-44680954 | None:intergenic | 40.0% |
| !! | ACTGTTGGCTTGGATAACAA+TGG | + | chr3.3:44681393-44681412 | MS.gene70948:CDS | 40.0% |
| !! | AGTTATTGGTATGGTGGGTT+TGG | + | chr3.3:44682489-44682508 | MS.gene70948:CDS | 40.0% |
| !! | ATGGTGCTATTACAGCAATG+AGG | + | chr3.3:44680994-44681013 | MS.gene70948:intron | 40.0% |
| !! | CAAATAGGGATAGTTTGCTC+GGG | + | chr3.3:44681340-44681359 | MS.gene70948:CDS | 40.0% |
| !! | GCAAATAGGGATAGTTTGCT+CGG | + | chr3.3:44681339-44681358 | MS.gene70948:CDS | 40.0% |
| !! | GCTTTGGATATTGATTTCGG+AGG | + | chr3.3:44681493-44681512 | MS.gene70948:intron | 40.0% |
| !! | TGGGTTTGGTTCTTGTCATA+TGG | + | chr3.3:44682503-44682522 | MS.gene70948:CDS | 40.0% |
| !!! | ATTGTCATTTTTCGGCTAGG+TGG | + | chr3.3:44682226-44682245 | MS.gene70948:intron | 40.0% |
| !!! | TTGTCATTTTTCGGCTAGGT+GGG | + | chr3.3:44682227-44682246 | MS.gene70948:intron | 40.0% |
| ACAGTTCTGCTCATTGCATC+TGG | - | chr3.3:44681378-44681397 | None:intergenic | 45.0% | |
| AGATGAGGGCCTTGAGAAAT+TGG | + | chr3.3:44681535-44681554 | MS.gene70948:CDS | 45.0% | |
| ATGTCATTCATGGATCTGCG+GGG | + | chr3.3:44682075-44682094 | MS.gene70948:intron | 45.0% | |
| CATGTCATTCATGGATCTGC+GGG | + | chr3.3:44682074-44682093 | MS.gene70948:intron | 45.0% | |
| CCATGTCATTCATGGATCTG+CGG | + | chr3.3:44682073-44682092 | MS.gene70948:intron | 45.0% | |
| CTGCAACGGCAAGTTATGAA+AGG | + | chr3.3:44681426-44681445 | MS.gene70948:CDS | 45.0% | |
| GATGCAATGAGCAGAACTGT+TGG | + | chr3.3:44681378-44681397 | MS.gene70948:CDS | 45.0% | |
| GATGCATGACGTTGTGTTTC+TGG | - | chr3.3:44680858-44680877 | None:intergenic | 45.0% | |
| GGTTCTTGTCATATGGCTTC+TGG | + | chr3.3:44682510-44682529 | MS.gene70948:CDS | 45.0% | |
| GTTGTACGCCATGTCATTCA+TGG | + | chr3.3:44682065-44682084 | MS.gene70948:intron | 45.0% | |
| TGGCATCTTCTTCAGACTCA+TGG | + | chr3.3:44680748-44680767 | MS.gene70948:CDS | 45.0% | |
| ! | AATGAGCAGAACTGTTGGCT+TGG | + | chr3.3:44681383-44681402 | MS.gene70948:CDS | 45.0% |
| ! | ACAGAGAGTGCAGAAGAACT+TGG | + | chr3.3:44682411-44682430 | MS.gene70948:intron | 45.0% |
| !! | ATGGACTTGTTGGTCTGCAA+CGG | + | chr3.3:44681412-44681431 | MS.gene70948:CDS | 45.0% |
| !! | TGTGTTTCTGGTCCAGATGA+AGG | - | chr3.3:44680846-44680865 | None:intergenic | 45.0% |
| !!! | TGTCATTTTTCGGCTAGGTG+GGG | + | chr3.3:44682228-44682247 | MS.gene70948:intron | 45.0% |
| !! | AAAAAAAAAAAAAACTTAAA+AGG | - | chr3.3:44682319-44682338 | None:intergenic | 5.0% |
| !! | AAAAAAAAAAAAACTTAAAA+GGG | - | chr3.3:44682318-44682337 | None:intergenic | 5.0% |
| ATGTCACAGATTCTCGGCTG+AGG | + | chr3.3:44681749-44681768 | MS.gene70948:CDS | 50.0% | |
| CCGCAGATCCATGAATGACA+TGG | - | chr3.3:44682076-44682095 | None:intergenic | 50.0% | |
| CGGTCTCCTCCAATTTCTCA+AGG | - | chr3.3:44681547-44681566 | None:intergenic | 50.0% | |
| GAAGGAGATGAATCGTCGCA+AGG | + | chr3.3:44681251-44681270 | MS.gene70948:CDS | 50.0% | |
| TCATGGATCTGCGGGGATTT+GGG | + | chr3.3:44682082-44682101 | MS.gene70948:intron | 50.0% | |
| TGAGGGCCTTGAGAAATTGG+AGG | + | chr3.3:44681538-44681557 | MS.gene70948:CDS | 50.0% | |
| TGTCACAGATTCTCGGCTGA+GGG | + | chr3.3:44681750-44681769 | MS.gene70948:CDS | 50.0% | |
| TTCATGGATCTGCGGGGATT+TGG | + | chr3.3:44682081-44682100 | MS.gene70948:intron | 50.0% | |
| !!! | GTCATTTTTCGGCTAGGTGG+GGG | + | chr3.3:44682229-44682248 | MS.gene70948:intron | 50.0% |
| TTCGGCTAGGTGGGGGTGAT+GGG | + | chr3.3:44682236-44682255 | MS.gene70948:intron | 60.0% | |
| TTTCGGCTAGGTGGGGGTGA+TGG | + | chr3.3:44682235-44682254 | MS.gene70948:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 44680747 | 44682546 | 44680747 | ID=MS.gene70948 |
| chr3.3 | mRNA | 44680747 | 44682546 | 44680747 | ID=MS.gene70948.t1;Parent=MS.gene70948 |
| chr3.3 | exon | 44680747 | 44680955 | 44680747 | ID=MS.gene70948.t1.exon1;Parent=MS.gene70948.t1 |
| chr3.3 | CDS | 44680747 | 44680955 | 44680747 | ID=cds.MS.gene70948.t1;Parent=MS.gene70948.t1 |
| chr3.3 | exon | 44681245 | 44681447 | 44681245 | ID=MS.gene70948.t1.exon2;Parent=MS.gene70948.t1 |
| chr3.3 | CDS | 44681245 | 44681447 | 44681245 | ID=cds.MS.gene70948.t1;Parent=MS.gene70948.t1 |
| chr3.3 | exon | 44681531 | 44681631 | 44681531 | ID=MS.gene70948.t1.exon3;Parent=MS.gene70948.t1 |
| chr3.3 | CDS | 44681531 | 44681631 | 44681531 | ID=cds.MS.gene70948.t1;Parent=MS.gene70948.t1 |
| chr3.3 | exon | 44681727 | 44681771 | 44681727 | ID=MS.gene70948.t1.exon4;Parent=MS.gene70948.t1 |
| chr3.3 | CDS | 44681727 | 44681771 | 44681727 | ID=cds.MS.gene70948.t1;Parent=MS.gene70948.t1 |
| chr3.3 | exon | 44682415 | 44682546 | 44682415 | ID=MS.gene70948.t1.exon5;Parent=MS.gene70948.t1 |
| chr3.3 | CDS | 44682415 | 44682546 | 44682415 | ID=cds.MS.gene70948.t1;Parent=MS.gene70948.t1 |
| Gene Sequence |
| Protein sequence |
