Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035781.t1 | AES70433.2 | 100 | 229 | 0 | 0 | 1 | 229 | 33 | 261 | 1.30E-116 | 429.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035781.t1 | Q94KK7 | 74.7 | 233 | 55 | 2 | 1 | 229 | 1 | 233 | 2.0e-86 | 320.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035781.t1 | I3S333 | 100.0 | 229 | 0 | 0 | 1 | 229 | 1 | 229 | 9.3e-117 | 429.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene33736 | MS.gene035781 | PPI |
| MS.gene035781 | MS.gene052542 | PPI |
| MS.gene030911 | MS.gene035781 | PPI |
| MS.gene32192 | MS.gene035781 | PPI |
| MS.gene035781 | MS.gene062010 | PPI |
| MS.gene035781 | MS.gene016966 | PPI |
| MS.gene75272 | MS.gene035781 | PPI |
| MS.gene035781 | MS.gene01343 | PPI |
| MS.gene035781 | MS.gene035217 | PPI |
| MS.gene035781 | MS.gene01756 | PPI |
| MS.gene035781 | MS.gene033936 | PPI |
| MS.gene035781 | MS.gene002374 | PPI |
| MS.gene47655 | MS.gene035781 | PPI |
| MS.gene035781 | MS.gene047508 | PPI |
| MS.gene035781 | MS.gene47923 | PPI |
| MS.gene76783 | MS.gene035781 | PPI |
| MS.gene035781 | MS.gene70862 | PPI |
| MS.gene035781 | MS.gene01347 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035781.t1 | MTR_8g031190 | 99.127 | 229 | 2 | 0 | 1 | 229 | 1 | 229 | 1.37e-168 | 463 |
| MS.gene035781.t1 | MTR_3g055200 | 100.000 | 229 | 0 | 0 | 1 | 229 | 33 | 261 | 6.64e-168 | 463 |
| MS.gene035781.t1 | MTR_5g094010 | 77.536 | 138 | 28 | 1 | 3 | 137 | 2 | 139 | 2.87e-72 | 218 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035781.t1 | AT1G79590 | 74.678 | 233 | 55 | 2 | 1 | 229 | 1 | 233 | 1.24e-123 | 350 |
| MS.gene035781.t1 | AT1G79590 | 74.678 | 233 | 55 | 2 | 1 | 229 | 1 | 233 | 1.24e-123 | 350 |
| MS.gene035781.t1 | AT1G79590 | 74.678 | 233 | 55 | 2 | 1 | 229 | 32 | 264 | 3.25e-123 | 350 |
| MS.gene035781.t1 | AT1G16240 | 72.414 | 232 | 61 | 2 | 1 | 229 | 1 | 232 | 6.74e-122 | 345 |
| MS.gene035781.t1 | AT1G16240 | 72.414 | 232 | 61 | 2 | 1 | 229 | 1 | 232 | 6.74e-122 | 345 |
| MS.gene035781.t1 | AT1G16240 | 72.414 | 232 | 61 | 2 | 1 | 229 | 1 | 232 | 6.74e-122 | 345 |
| MS.gene035781.t1 | AT1G16240 | 72.021 | 193 | 51 | 2 | 1 | 190 | 1 | 193 | 1.25e-94 | 276 |
| MS.gene035781.t1 | AT1G16230 | 56.545 | 191 | 80 | 2 | 1 | 189 | 1 | 190 | 5.30e-66 | 202 |
| MS.gene035781.t1 | AT1G16225 | 47.938 | 194 | 96 | 2 | 1 | 192 | 1 | 191 | 5.57e-50 | 162 |
| MS.gene035781.t1 | AT1G16225 | 47.647 | 170 | 84 | 2 | 25 | 192 | 1 | 167 | 6.70e-40 | 136 |
| MS.gene035781.t1 | AT1G16225 | 46.763 | 139 | 69 | 2 | 1 | 137 | 1 | 136 | 4.85e-32 | 114 |
| MS.gene035781.t1 | AT1G28490 | 25.911 | 247 | 154 | 10 | 1 | 222 | 1 | 243 | 3.69e-11 | 61.6 |
| MS.gene035781.t1 | AT1G28490 | 29.940 | 167 | 100 | 6 | 72 | 222 | 39 | 204 | 7.47e-11 | 60.1 |
| MS.gene035781.t1 | AT1G28490 | 29.940 | 167 | 100 | 6 | 72 | 222 | 33 | 198 | 7.75e-11 | 60.1 |
Find 52 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCATCTGGTTTAATTTC+TGG | 0.179304 | 3.2:-46352788 | None:intergenic |
| ACATGTCAAACTTTGCAAAT+AGG | 0.204618 | 3.2:+46352750 | MS.gene035781:CDS |
| GATGCATGACGTTGTGTTTC+TGG | 0.219951 | 3.2:-46352280 | None:intergenic |
| AAGAAGGAAAATCACAATAT+TGG | 0.253542 | 3.2:+46352309 | MS.gene035781:CDS |
| GGTTCTTGTCATATGGCTTC+TGG | 0.253840 | 3.2:+46353930 | MS.gene035781:CDS |
| AGAAGGAAAATCACAATATT+GGG | 0.265836 | 3.2:+46352310 | MS.gene035781:CDS |
| AGATGAGGGCCTTGAGAAAT+TGG | 0.280110 | 3.2:+46352960 | MS.gene035781:CDS |
| CATGTCAAACTTTGCAAATA+GGG | 0.294997 | 3.2:+46352751 | MS.gene035781:CDS |
| CATAATTCATTTCCTTCATC+TGG | 0.315930 | 3.2:+46352256 | MS.gene035781:CDS |
| CAGCTGAATACTCACTTTAC+AGG | 0.320411 | 3.2:-46352373 | None:intergenic |
| TGGGTTTGGTTCTTGTCATA+TGG | 0.348542 | 3.2:+46353923 | MS.gene035781:CDS |
| AGTGATTGGTATAGTGGGTT+TGG | 0.352039 | 3.2:+46353909 | MS.gene035781:CDS |
| ACAGTTCTGCTCATTGCATC+TGG | 0.359258 | 3.2:-46352800 | None:intergenic |
| ATTAGCAGTGATTGGTATAG+TGG | 0.391361 | 3.2:+46353903 | MS.gene035781:CDS |
| TGTTCAAAGTTGAAGCCATT+TGG | 0.405777 | 3.2:-46352730 | None:intergenic |
| GGGATTGCAAGCTATCTAAT+CGG | 0.411055 | 3.2:-46352336 | None:intergenic |
| ATGTAGATGTCACAGATTCT+CGG | 0.431976 | 3.2:+46353168 | MS.gene035781:CDS |
| TTCTTCAGACTCATGGTTGA+AGG | 0.435094 | 3.2:+46352180 | MS.gene035781:CDS |
| TTACAGGGAGCTTTGACAAA+AGG | 0.435213 | 3.2:-46352357 | None:intergenic |
| TACAGGGAGCTTTGACAAAA+GGG | 0.439839 | 3.2:-46352356 | None:intergenic |
| TTGGATAACAATGGACTTGT+TGG | 0.440074 | 3.2:+46352827 | MS.gene035781:CDS |
| GAGGTCAAAGGTTAACCAAA+TGG | 0.450048 | 3.2:+46352715 | MS.gene035781:CDS |
| TGTGTTTCTGGTCCAGATGA+AGG | 0.467807 | 3.2:-46352268 | None:intergenic |
| TGGCATCTTCTTCAGACTCA+TGG | 0.482083 | 3.2:+46352173 | MS.gene035781:CDS |
| AGGACAACCTTGCAAATTTG+AGG | 0.487031 | 3.2:+46352696 | MS.gene035781:CDS |
| CCTTGCAAATTTGAGGTCAA+AGG | 0.488877 | 3.2:+46352703 | MS.gene035781:CDS |
| GCAAATAGGGATAGTTTGCT+CGG | 0.495730 | 3.2:+46352764 | MS.gene035781:CDS |
| GGATTGCAAGCTATCTAATC+GGG | 0.534842 | 3.2:-46352335 | None:intergenic |
| GTCATGCATCTGCTATAAGA+AGG | 0.539643 | 3.2:+46352293 | MS.gene035781:CDS |
| ACAGAGAGTGCAGAAGAACT+TGG | 0.545697 | 3.2:+46353831 | MS.gene035781:intron |
| TTAGCAGTGATTGGTATAGT+GGG | 0.549125 | 3.2:+46353904 | MS.gene035781:CDS |
| CAAATAGGGATAGTTTGCTC+GGG | 0.550659 | 3.2:+46352765 | MS.gene035781:CDS |
| ATGTCACAGATTCTCGGCTG+AGG | 0.559797 | 3.2:+46353174 | MS.gene035781:CDS |
| ATGGACTTGTTGGTCTGCAA+CGG | 0.564781 | 3.2:+46352837 | MS.gene035781:CDS |
| AATGATAAATAGGTCTGAGA+AGG | 0.567578 | 3.2:+46352658 | MS.gene035781:intron |
| CGGTCTCCTCCAATTTCTCA+AGG | 0.568939 | 3.2:-46352969 | None:intergenic |
| TGCATGCTATTAGCAGTGAT+TGG | 0.573326 | 3.2:+46353895 | MS.gene035781:CDS |
| CCTTTGACCTCAAATTTGCA+AGG | 0.577028 | 3.2:-46352703 | None:intergenic |
| TTTCTAACAGAGCAAGATGA+GGG | 0.582199 | 3.2:+46352946 | MS.gene035781:intron |
| CTGCAACGGCAAGTTATGAA+AGG | 0.592264 | 3.2:+46352851 | MS.gene035781:CDS |
| TGAGGGCCTTGAGAAATTGG+AGG | 0.594430 | 3.2:+46352963 | MS.gene035781:CDS |
| AAGTACAAAACATATTGCGT+TGG | 0.595524 | 3.2:+46352996 | MS.gene035781:CDS |
| TGTCACAGATTCTCGGCTGA+GGG | 0.596979 | 3.2:+46353175 | MS.gene035781:CDS |
| GATGCAATGAGCAGAACTGT+TGG | 0.597248 | 3.2:+46352803 | MS.gene035781:CDS |
| TTAAACAAACGTACTAAGGG+TGG | 0.598231 | 3.2:+46353859 | MS.gene035781:CDS |
| AATGAGCAGAACTGTTGGCT+TGG | 0.609524 | 3.2:+46352808 | MS.gene035781:CDS |
| GAAGGAAAATCACAATATTG+GGG | 0.609732 | 3.2:+46352311 | MS.gene035781:CDS |
| AGCTGAATACTCACTTTACA+GGG | 0.612522 | 3.2:-46352372 | None:intergenic |
| GAGTCTGAAGAAGATGCCAT+TGG | 0.624414 | 3.2:-46352169 | None:intergenic |
| ACTGTTGGCTTGGATAACAA+TGG | 0.640180 | 3.2:+46352818 | MS.gene035781:CDS |
| GAAGGAGATGAATCGTCGCA+AGG | 0.666742 | 3.2:+46352676 | MS.gene035781:CDS |
| AAACTTGCTGATGATATCAG+TGG | 0.699595 | 3.2:+46352220 | MS.gene035781:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTATAATTATATGAAAA+TGG | - | chr3.2:46352527-46352546 | None:intergenic | 10.0% |
| !! | GAATTAAAAAAAAACTTAAA+AGG | - | chr3.2:46353744-46353763 | None:intergenic | 10.0% |
| !! | ATAATTATATGAAAATGGTA+AGG | - | chr3.2:46352522-46352541 | None:intergenic | 15.0% |
| !! | GGAAATATAATCATTAATTT+GGG | + | chr3.2:46353448-46353467 | MS.gene035781:intron | 15.0% |
| !! | TATAAATTATTGAATATCTG+TGG | + | chr3.2:46353609-46353628 | MS.gene035781:intron | 15.0% |
| !! | TGGAAATATAATCATTAATT+TGG | + | chr3.2:46353447-46353466 | MS.gene035781:intron | 15.0% |
| !!! | AAGATAAAATTGTCATTTTT+CGG | + | chr3.2:46353643-46353662 | MS.gene035781:intron | 15.0% |
| !!! | AATATGTTTTGTACTTAATA+CGG | - | chr3.2:46352992-46353011 | None:intergenic | 15.0% |
| !! | AAAAAAACTTAAAAGGGAAA+AGG | - | chr3.2:46353737-46353756 | None:intergenic | 20.0% |
| !! | TTAGCAAAGAAAATTAACAT+AGG | - | chr3.2:46353072-46353091 | None:intergenic | 20.0% |
| !! | TTCTTTGTCAAATGATAAAT+AGG | + | chr3.2:46352648-46352667 | MS.gene035781:intron | 20.0% |
| !!! | AAATAGATGTACCATATTTT+TGG | + | chr3.2:46353408-46353427 | MS.gene035781:intron | 20.0% |
| !!! | AATTTTAAACAAACGTACTA+AGG | + | chr3.2:46353855-46353874 | MS.gene035781:CDS | 20.0% |
| !!! | ATTTTAAACAAACGTACTAA+GGG | + | chr3.2:46353856-46353875 | MS.gene035781:CDS | 20.0% |
| !!! | TGAATCTTTTATTTTCTTCT+AGG | + | chr3.2:46353130-46353149 | MS.gene035781:intron | 20.0% |
| !!! | TTATTCTGAAAAATGTTTTG+TGG | + | chr3.2:46352478-46352497 | MS.gene035781:intron | 20.0% |
| ! | AAGAAGGAAAATCACAATAT+TGG | + | chr3.2:46352309-46352328 | MS.gene035781:CDS | 25.0% |
| ! | AGAAGGAAAATCACAATATT+GGG | + | chr3.2:46352310-46352329 | MS.gene035781:CDS | 25.0% |
| ! | CAAAATACTTACCAGAATTA+AGG | - | chr3.2:46353344-46353363 | None:intergenic | 25.0% |
| ! | CAAAGAAAATTAACATAGGA+TGG | - | chr3.2:46353068-46353087 | None:intergenic | 25.0% |
| ! | GTAAACTTACATAGTTAACT+AGG | + | chr3.2:46353580-46353599 | MS.gene035781:intron | 25.0% |
| ! | TATCACAAAAGAAACAGAAA+AGG | - | chr3.2:46353811-46353830 | None:intergenic | 25.0% |
| !! | AAGTATTTTGTCTCAGAATT+AGG | + | chr3.2:46353354-46353373 | MS.gene035781:intron | 25.0% |
| !! | ATCTATTTGAAATGTCAGAT+TGG | - | chr3.2:46353396-46353415 | None:intergenic | 25.0% |
| !! | GAAATACATAATTTGTGCTT+TGG | + | chr3.2:46352902-46352921 | MS.gene035781:intron | 25.0% |
| !!! | AAAAAGCATCATATTACTAC+AGG | - | chr3.2:46352460-46352479 | None:intergenic | 25.0% |
| !!! | ATGTTGTTACTTTTTGTATG+AGG | + | chr3.2:46353533-46353552 | MS.gene035781:intron | 25.0% |
| AAATGGTAAGGAGATAGATA+TGG | - | chr3.2:46352510-46352529 | None:intergenic | 30.0% | |
| AAGTACAAAACATATTGCGT+TGG | + | chr3.2:46352996-46353015 | MS.gene035781:CDS | 30.0% | |
| AATGATAAATAGGTCTGAGA+AGG | + | chr3.2:46352658-46352677 | MS.gene035781:intron | 30.0% | |
| ACATGTCAAACTTTGCAAAT+AGG | + | chr3.2:46352750-46352769 | MS.gene035781:CDS | 30.0% | |
| CATAATTCATTTCCTTCATC+TGG | + | chr3.2:46352256-46352275 | MS.gene035781:CDS | 30.0% | |
| CATGTCAAACTTTGCAAATA+GGG | + | chr3.2:46352751-46352770 | MS.gene035781:CDS | 30.0% | |
| CGTACATCAAACCAAAAATA+TGG | - | chr3.2:46353422-46353441 | None:intergenic | 30.0% | |
| GAAGGAAAATCACAATATTG+GGG | + | chr3.2:46352311-46352330 | MS.gene035781:CDS | 30.0% | |
| GTTTCTAAGTTCCTTAATTC+TGG | + | chr3.2:46353330-46353349 | MS.gene035781:intron | 30.0% | |
| TATATGCCTAAAGAAAGTTG+TGG | - | chr3.2:46353212-46353231 | None:intergenic | 30.0% | |
| TTGTTTACCCTGATTAAGAA+AGG | + | chr3.2:46352396-46352415 | MS.gene035781:intron | 30.0% | |
| ! | ATTGCATCTGGTTTAATTTC+TGG | - | chr3.2:46352791-46352810 | None:intergenic | 30.0% |
| !! | TGTGCTTTGGATATTGATTT+CGG | + | chr3.2:46352915-46352934 | MS.gene035781:intron | 30.0% |
| !!! | AAAATTGTCATTTTTCGGCT+AGG | + | chr3.2:46353648-46353667 | MS.gene035781:intron | 30.0% |
| !!! | TATTTTCTTCTAGGATGACT+TGG | + | chr3.2:46353139-46353158 | MS.gene035781:intron | 30.0% |
| AGCTGAATACTCACTTTACA+GGG | - | chr3.2:46352375-46352394 | None:intergenic | 35.0% | |
| ATGTAGATGTCACAGATTCT+CGG | + | chr3.2:46353168-46353187 | MS.gene035781:CDS | 35.0% | |
| ATTAGCAGTGATTGGTATAG+TGG | + | chr3.2:46353903-46353922 | MS.gene035781:CDS | 35.0% | |
| CTCTTACCACAACTTTCTTT+AGG | + | chr3.2:46353203-46353222 | MS.gene035781:intron | 35.0% | |
| TGTTCAAAGTTGAAGCCATT+TGG | - | chr3.2:46352733-46352752 | None:intergenic | 35.0% | |
| TTAAACAAACGTACTAAGGG+TGG | + | chr3.2:46353859-46353878 | MS.gene035781:CDS | 35.0% | |
| TTACCCTGATTAAGAAAGGA+TGG | + | chr3.2:46352400-46352419 | MS.gene035781:intron | 35.0% | |
| TTAGCAGTGATTGGTATAGT+GGG | + | chr3.2:46353904-46353923 | MS.gene035781:CDS | 35.0% | |
| TTTCTAACAGAGCAAGATGA+GGG | + | chr3.2:46352946-46352965 | MS.gene035781:intron | 35.0% | |
| ! | TTGGATAACAATGGACTTGT+TGG | + | chr3.2:46352827-46352846 | MS.gene035781:CDS | 35.0% |
| ! | TTGGTTTGATGTACGTTGTT+TGG | + | chr3.2:46353427-46353446 | MS.gene035781:intron | 35.0% |
| ! | TTTTCTAACAGAGCAAGATG+AGG | + | chr3.2:46352945-46352964 | MS.gene035781:intron | 35.0% |
| !! | AAACTTGCTGATGATATCAG+TGG | + | chr3.2:46352220-46352239 | MS.gene035781:CDS | 35.0% |
| AGCACCATCCTTTCTTAATC+AGG | - | chr3.2:46352407-46352426 | None:intergenic | 40.0% | |
| AGGACAACCTTGCAAATTTG+AGG | + | chr3.2:46352696-46352715 | MS.gene035781:CDS | 40.0% | |
| ATGTCAGATTGGTGAGTATG+TGG | - | chr3.2:46353385-46353404 | None:intergenic | 40.0% | |
| CAGCTGAATACTCACTTTAC+AGG | - | chr3.2:46352376-46352395 | None:intergenic | 40.0% | |
| CCTTTGACCTCAAATTTGCA+AGG | - | chr3.2:46352706-46352725 | None:intergenic | 40.0% | |
| GAGGTCAAAGGTTAACCAAA+TGG | + | chr3.2:46352715-46352734 | MS.gene035781:CDS | 40.0% | |
| GCACCATCCTTTCTTAATCA+GGG | - | chr3.2:46352406-46352425 | None:intergenic | 40.0% | |
| GGATTGCAAGCTATCTAATC+GGG | - | chr3.2:46352338-46352357 | None:intergenic | 40.0% | |
| GGGATTGCAAGCTATCTAAT+CGG | - | chr3.2:46352339-46352358 | None:intergenic | 40.0% | |
| GTCATGCATCTGCTATAAGA+AGG | + | chr3.2:46352293-46352312 | MS.gene035781:CDS | 40.0% | |
| TACTACAGGACATTGAGTTC+AGG | - | chr3.2:46352446-46352465 | None:intergenic | 40.0% | |
| TGCATGCTATTAGCAGTGAT+TGG | + | chr3.2:46353895-46353914 | MS.gene035781:CDS | 40.0% | |
| TGTCAGATTGGTGAGTATGT+GGG | - | chr3.2:46353384-46353403 | None:intergenic | 40.0% | |
| TTCTTCAGACTCATGGTTGA+AGG | + | chr3.2:46352180-46352199 | MS.gene035781:CDS | 40.0% | |
| ! | CCTTGCAAATTTGAGGTCAA+AGG | + | chr3.2:46352703-46352722 | MS.gene035781:CDS | 40.0% |
| ! | TACAGGGAGCTTTGACAAAA+GGG | - | chr3.2:46352359-46352378 | None:intergenic | 40.0% |
| ! | TGTCTTCTTTTGAGCTGCAA+AGG | + | chr3.2:46352601-46352620 | MS.gene035781:intron | 40.0% |
| ! | TTACAGGGAGCTTTGACAAA+AGG | - | chr3.2:46352360-46352379 | None:intergenic | 40.0% |
| !! | ACTGTTGGCTTGGATAACAA+TGG | + | chr3.2:46352818-46352837 | MS.gene035781:CDS | 40.0% |
| !! | AGTGATTGGTATAGTGGGTT+TGG | + | chr3.2:46353909-46353928 | MS.gene035781:CDS | 40.0% |
| !! | ATGGTGCTATTACAGCAATG+AGG | + | chr3.2:46352419-46352438 | MS.gene035781:intron | 40.0% |
| !! | CAAATAGGGATAGTTTGCTC+GGG | + | chr3.2:46352765-46352784 | MS.gene035781:CDS | 40.0% |
| !! | GCAAATAGGGATAGTTTGCT+CGG | + | chr3.2:46352764-46352783 | MS.gene035781:CDS | 40.0% |
| !! | GCTTTGGATATTGATTTCGG+AGG | + | chr3.2:46352918-46352937 | MS.gene035781:intron | 40.0% |
| !! | TGGGTTTGGTTCTTGTCATA+TGG | + | chr3.2:46353923-46353942 | MS.gene035781:CDS | 40.0% |
| !!! | ATTGTCATTTTTCGGCTAGG+TGG | + | chr3.2:46353651-46353670 | MS.gene035781:intron | 40.0% |
| !!! | TTGTCATTTTTCGGCTAGGT+GGG | + | chr3.2:46353652-46353671 | MS.gene035781:intron | 40.0% |
| ACAGTTCTGCTCATTGCATC+TGG | - | chr3.2:46352803-46352822 | None:intergenic | 45.0% | |
| AGATGAGGGCCTTGAGAAAT+TGG | + | chr3.2:46352960-46352979 | MS.gene035781:CDS | 45.0% | |
| ATGTCATTCATGGATCTGCG+GGG | + | chr3.2:46353500-46353519 | MS.gene035781:intron | 45.0% | |
| CATGTCATTCATGGATCTGC+GGG | + | chr3.2:46353499-46353518 | MS.gene035781:intron | 45.0% | |
| CCATGTCATTCATGGATCTG+CGG | + | chr3.2:46353498-46353517 | MS.gene035781:intron | 45.0% | |
| CTGCAACGGCAAGTTATGAA+AGG | + | chr3.2:46352851-46352870 | MS.gene035781:CDS | 45.0% | |
| GATGCAATGAGCAGAACTGT+TGG | + | chr3.2:46352803-46352822 | MS.gene035781:CDS | 45.0% | |
| GATGCATGACGTTGTGTTTC+TGG | - | chr3.2:46352283-46352302 | None:intergenic | 45.0% | |
| GGTTCTTGTCATATGGCTTC+TGG | + | chr3.2:46353930-46353949 | MS.gene035781:CDS | 45.0% | |
| GTTGTACGCCATGTCATTCA+TGG | + | chr3.2:46353490-46353509 | MS.gene035781:intron | 45.0% | |
| TGGCATCTTCTTCAGACTCA+TGG | + | chr3.2:46352173-46352192 | MS.gene035781:CDS | 45.0% | |
| ! | AATGAGCAGAACTGTTGGCT+TGG | + | chr3.2:46352808-46352827 | MS.gene035781:CDS | 45.0% |
| ! | ACAGAGAGTGCAGAAGAACT+TGG | + | chr3.2:46353831-46353850 | MS.gene035781:intron | 45.0% |
| !! | ATGGACTTGTTGGTCTGCAA+CGG | + | chr3.2:46352837-46352856 | MS.gene035781:CDS | 45.0% |
| !! | TGTGTTTCTGGTCCAGATGA+AGG | - | chr3.2:46352271-46352290 | None:intergenic | 45.0% |
| !!! | TGTCATTTTTCGGCTAGGTG+GGG | + | chr3.2:46353653-46353672 | MS.gene035781:intron | 45.0% |
| !! | AATTAAAAAAAAACTTAAAA+GGG | - | chr3.2:46353743-46353762 | None:intergenic | 5.0% |
| ATGTCACAGATTCTCGGCTG+AGG | + | chr3.2:46353174-46353193 | MS.gene035781:CDS | 50.0% | |
| CCGCAGATCCATGAATGACA+TGG | - | chr3.2:46353501-46353520 | None:intergenic | 50.0% | |
| CGGTCTCCTCCAATTTCTCA+AGG | - | chr3.2:46352972-46352991 | None:intergenic | 50.0% | |
| GAAGGAGATGAATCGTCGCA+AGG | + | chr3.2:46352676-46352695 | MS.gene035781:CDS | 50.0% | |
| TCATGGATCTGCGGGGATTT+GGG | + | chr3.2:46353507-46353526 | MS.gene035781:intron | 50.0% | |
| TGAGGGCCTTGAGAAATTGG+AGG | + | chr3.2:46352963-46352982 | MS.gene035781:CDS | 50.0% | |
| TGTCACAGATTCTCGGCTGA+GGG | + | chr3.2:46353175-46353194 | MS.gene035781:CDS | 50.0% | |
| TTCATGGATCTGCGGGGATT+TGG | + | chr3.2:46353506-46353525 | MS.gene035781:intron | 50.0% | |
| !!! | GTCATTTTTCGGCTAGGTGG+GGG | + | chr3.2:46353654-46353673 | MS.gene035781:intron | 50.0% |
| TTCGGCTAGGTGGGGGTGAT+GGG | + | chr3.2:46353661-46353680 | MS.gene035781:intron | 60.0% | |
| TTTCGGCTAGGTGGGGGTGA+TGG | + | chr3.2:46353660-46353679 | MS.gene035781:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 46352172 | 46353966 | 46352172 | ID=MS.gene035781 |
| chr3.2 | mRNA | 46352172 | 46353966 | 46352172 | ID=MS.gene035781.t1;Parent=MS.gene035781 |
| chr3.2 | exon | 46352172 | 46352380 | 46352172 | ID=MS.gene035781.t1.exon1;Parent=MS.gene035781.t1 |
| chr3.2 | CDS | 46352172 | 46352380 | 46352172 | ID=cds.MS.gene035781.t1;Parent=MS.gene035781.t1 |
| chr3.2 | exon | 46352670 | 46352872 | 46352670 | ID=MS.gene035781.t1.exon2;Parent=MS.gene035781.t1 |
| chr3.2 | CDS | 46352670 | 46352872 | 46352670 | ID=cds.MS.gene035781.t1;Parent=MS.gene035781.t1 |
| chr3.2 | exon | 46352956 | 46353056 | 46352956 | ID=MS.gene035781.t1.exon3;Parent=MS.gene035781.t1 |
| chr3.2 | CDS | 46352956 | 46353056 | 46352956 | ID=cds.MS.gene035781.t1;Parent=MS.gene035781.t1 |
| chr3.2 | exon | 46353152 | 46353196 | 46353152 | ID=MS.gene035781.t1.exon4;Parent=MS.gene035781.t1 |
| chr3.2 | CDS | 46353152 | 46353196 | 46353152 | ID=cds.MS.gene035781.t1;Parent=MS.gene035781.t1 |
| chr3.2 | exon | 46353835 | 46353966 | 46353835 | ID=MS.gene035781.t1.exon5;Parent=MS.gene035781.t1 |
| chr3.2 | CDS | 46353835 | 46353966 | 46353835 | ID=cds.MS.gene035781.t1;Parent=MS.gene035781.t1 |
| Gene Sequence |
| Protein sequence |
