Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73141.t1 | AES70433.2 | 100 | 229 | 0 | 0 | 1 | 229 | 33 | 261 | 1.30E-116 | 429.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73141.t1 | Q94KK7 | 74.7 | 233 | 55 | 2 | 1 | 229 | 1 | 233 | 2.0e-86 | 320.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73141.t1 | I3S333 | 100.0 | 229 | 0 | 0 | 1 | 229 | 1 | 229 | 9.3e-117 | 429.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene73141 | -0.806249 | 9.01E-50 | -1.69E-46 |
| MS.gene049427 | MS.gene73141 | -0.801637 | 8.20E-49 | -1.69E-46 |
| MS.gene049907 | MS.gene73141 | -0.803791 | 2.95E-49 | -1.69E-46 |
| MS.gene050593 | MS.gene73141 | -0.802909 | 4.48E-49 | -1.69E-46 |
| MS.gene050950 | MS.gene73141 | -0.800299 | 1.54E-48 | -1.69E-46 |
| MS.gene051255 | MS.gene73141 | -0.840376 | 9.03E-58 | -1.69E-46 |
| MS.gene051387 | MS.gene73141 | -0.82523 | 5.25E-54 | -1.69E-46 |
| MS.gene051694 | MS.gene73141 | -0.803707 | 3.07E-49 | -1.69E-46 |
| MS.gene051858 | MS.gene73141 | -0.800099 | 1.69E-48 | -1.69E-46 |
| MS.gene052271 | MS.gene73141 | -0.809279 | 2.05E-50 | -1.69E-46 |
| MS.gene053107 | MS.gene73141 | -0.804702 | 1.90E-49 | -1.69E-46 |
| MS.gene053322 | MS.gene73141 | -0.821122 | 4.78E-53 | -1.69E-46 |
| MS.gene05492 | MS.gene73141 | -0.802329 | 5.91E-49 | -1.69E-46 |
| MS.gene055206 | MS.gene73141 | -0.800625 | 1.32E-48 | -1.69E-46 |
| MS.gene055647 | MS.gene73141 | -0.83935 | 1.67E-57 | -1.69E-46 |
| MS.gene056410 | MS.gene73141 | -0.808271 | 3.36E-50 | -1.69E-46 |
| MS.gene056452 | MS.gene73141 | -0.805221 | 1.48E-49 | -1.69E-46 |
| MS.gene056796 | MS.gene73141 | -0.813176 | 2.92E-51 | -1.69E-46 |
| MS.gene057011 | MS.gene73141 | -0.813821 | 2.11E-51 | -1.69E-46 |
| MS.gene057331 | MS.gene73141 | -0.803415 | 3.52E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene73141 | -0.818313 | 2.09E-52 | -1.69E-46 |
| MS.gene05883 | MS.gene73141 | -0.825943 | 3.56E-54 | -1.69E-46 |
| MS.gene059536 | MS.gene73141 | -0.824714 | 6.95E-54 | -1.69E-46 |
| MS.gene059902 | MS.gene73141 | -0.803566 | 3.28E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene73141 | -0.826204 | 3.08E-54 | -1.69E-46 |
| MS.gene06092 | MS.gene73141 | -0.803544 | 3.31E-49 | -1.69E-46 |
| MS.gene061200 | MS.gene73141 | -0.814876 | 1.23E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene73141 | MS.gene70862 | PPI |
| MS.gene73141 | MS.gene01347 | PPI |
| MS.gene73141 | MS.gene052542 | PPI |
| MS.gene47655 | MS.gene73141 | PPI |
| MS.gene76783 | MS.gene73141 | PPI |
| MS.gene73141 | MS.gene062010 | PPI |
| MS.gene73141 | MS.gene016966 | PPI |
| MS.gene33736 | MS.gene73141 | PPI |
| MS.gene030911 | MS.gene73141 | PPI |
| MS.gene73141 | MS.gene01343 | PPI |
| MS.gene32192 | MS.gene73141 | PPI |
| MS.gene73141 | MS.gene035217 | PPI |
| MS.gene73141 | MS.gene01756 | PPI |
| MS.gene73141 | MS.gene033936 | PPI |
| MS.gene73141 | MS.gene002374 | PPI |
| MS.gene73141 | MS.gene047508 | PPI |
| MS.gene73141 | MS.gene47923 | PPI |
| MS.gene75272 | MS.gene73141 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73141.t1 | MTR_8g031190 | 99.127 | 229 | 2 | 0 | 1 | 229 | 1 | 229 | 1.37e-168 | 463 |
| MS.gene73141.t1 | MTR_3g055200 | 100.000 | 229 | 0 | 0 | 1 | 229 | 33 | 261 | 6.64e-168 | 463 |
| MS.gene73141.t1 | MTR_5g094010 | 77.536 | 138 | 28 | 1 | 3 | 137 | 2 | 139 | 2.87e-72 | 218 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73141.t1 | AT1G79590 | 74.678 | 233 | 55 | 2 | 1 | 229 | 1 | 233 | 1.24e-123 | 350 |
| MS.gene73141.t1 | AT1G79590 | 74.678 | 233 | 55 | 2 | 1 | 229 | 1 | 233 | 1.24e-123 | 350 |
| MS.gene73141.t1 | AT1G79590 | 74.678 | 233 | 55 | 2 | 1 | 229 | 32 | 264 | 3.25e-123 | 350 |
| MS.gene73141.t1 | AT1G16240 | 72.414 | 232 | 61 | 2 | 1 | 229 | 1 | 232 | 6.74e-122 | 345 |
| MS.gene73141.t1 | AT1G16240 | 72.414 | 232 | 61 | 2 | 1 | 229 | 1 | 232 | 6.74e-122 | 345 |
| MS.gene73141.t1 | AT1G16240 | 72.414 | 232 | 61 | 2 | 1 | 229 | 1 | 232 | 6.74e-122 | 345 |
| MS.gene73141.t1 | AT1G16240 | 72.021 | 193 | 51 | 2 | 1 | 190 | 1 | 193 | 1.25e-94 | 276 |
| MS.gene73141.t1 | AT1G16230 | 56.545 | 191 | 80 | 2 | 1 | 189 | 1 | 190 | 5.30e-66 | 202 |
| MS.gene73141.t1 | AT1G16225 | 47.938 | 194 | 96 | 2 | 1 | 192 | 1 | 191 | 5.57e-50 | 162 |
| MS.gene73141.t1 | AT1G16225 | 47.647 | 170 | 84 | 2 | 25 | 192 | 1 | 167 | 6.70e-40 | 136 |
| MS.gene73141.t1 | AT1G16225 | 46.763 | 139 | 69 | 2 | 1 | 137 | 1 | 136 | 4.85e-32 | 114 |
| MS.gene73141.t1 | AT1G28490 | 25.911 | 247 | 154 | 10 | 1 | 222 | 1 | 243 | 3.69e-11 | 61.6 |
| MS.gene73141.t1 | AT1G28490 | 29.940 | 167 | 100 | 6 | 72 | 222 | 39 | 204 | 7.47e-11 | 60.1 |
| MS.gene73141.t1 | AT1G28490 | 29.940 | 167 | 100 | 6 | 72 | 222 | 33 | 198 | 7.75e-11 | 60.1 |
Find 52 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCATCTGGTTTAATTTC+TGG | 0.179304 | 3.4:-51139571 | None:intergenic |
| ACATGTCAAACTTTGCAAAT+AGG | 0.204618 | 3.4:+51139533 | MS.gene73141:CDS |
| GATGCATGACGTTGTGTTTC+TGG | 0.219951 | 3.4:-51139063 | None:intergenic |
| AAGAAGGAAAATCACAATAT+TGG | 0.253542 | 3.4:+51139092 | MS.gene73141:CDS |
| GGTTCTTGTCATATGGCTTC+TGG | 0.253840 | 3.4:+51140717 | MS.gene73141:CDS |
| AGAAGGAAAATCACAATATT+GGG | 0.265836 | 3.4:+51139093 | MS.gene73141:CDS |
| AGATGAGGGCCTTGAGAAAT+TGG | 0.280110 | 3.4:+51139743 | MS.gene73141:CDS |
| CATGTCAAACTTTGCAAATA+GGG | 0.294997 | 3.4:+51139534 | MS.gene73141:CDS |
| CATAATTCATTTCCTTCATC+TGG | 0.315930 | 3.4:+51139039 | MS.gene73141:CDS |
| CAGCTGAATACTCACTTTAC+AGG | 0.320411 | 3.4:-51139156 | None:intergenic |
| TGGGTTTGGTTCTTGTCATA+TGG | 0.348542 | 3.4:+51140710 | MS.gene73141:CDS |
| AGTGATTGGTATAGTGGGTT+TGG | 0.352039 | 3.4:+51140696 | MS.gene73141:CDS |
| ACAGTTCTGCTCATTGCATC+TGG | 0.359258 | 3.4:-51139583 | None:intergenic |
| ATTAGCAGTGATTGGTATAG+TGG | 0.391361 | 3.4:+51140690 | MS.gene73141:CDS |
| TGTTCAAAGTTGAAGCCATT+TGG | 0.405777 | 3.4:-51139513 | None:intergenic |
| GGGATTGCAAGCTATCTAAT+CGG | 0.411055 | 3.4:-51139119 | None:intergenic |
| ATGTAGATGTCACAGATTCT+CGG | 0.431976 | 3.4:+51139951 | MS.gene73141:CDS |
| TTCTTCAGACTCATGGTTGA+AGG | 0.435094 | 3.4:+51138963 | MS.gene73141:CDS |
| TTACAGGGAGCTTTGACAAA+AGG | 0.435213 | 3.4:-51139140 | None:intergenic |
| TACAGGGAGCTTTGACAAAA+GGG | 0.439839 | 3.4:-51139139 | None:intergenic |
| TTGGATAACAATGGACTTGT+TGG | 0.440074 | 3.4:+51139610 | MS.gene73141:CDS |
| GAGGTCAAAGGTTAACCAAA+TGG | 0.450048 | 3.4:+51139498 | MS.gene73141:CDS |
| TGTGTTTCTGGTCCAGATGA+AGG | 0.467807 | 3.4:-51139051 | None:intergenic |
| TGGCATCTTCTTCAGACTCA+TGG | 0.482083 | 3.4:+51138956 | MS.gene73141:CDS |
| AGGACAACCTTGCAAATTTG+AGG | 0.487031 | 3.4:+51139479 | MS.gene73141:CDS |
| CCTTGCAAATTTGAGGTCAA+AGG | 0.488877 | 3.4:+51139486 | MS.gene73141:CDS |
| GCAAATAGGGATAGTTTGCT+CGG | 0.495730 | 3.4:+51139547 | MS.gene73141:CDS |
| GGATTGCAAGCTATCTAATC+GGG | 0.534842 | 3.4:-51139118 | None:intergenic |
| GTCATGCATCTGCTATAAGA+AGG | 0.539643 | 3.4:+51139076 | MS.gene73141:CDS |
| ACAGAGAGTGCAGAAGAACT+TGG | 0.545697 | 3.4:+51140618 | MS.gene73141:intron |
| TTAGCAGTGATTGGTATAGT+GGG | 0.549125 | 3.4:+51140691 | MS.gene73141:CDS |
| CAAATAGGGATAGTTTGCTC+GGG | 0.550659 | 3.4:+51139548 | MS.gene73141:CDS |
| ATGTCACAGATTCTCGGCTG+AGG | 0.559797 | 3.4:+51139957 | MS.gene73141:CDS |
| ATGGACTTGTTGGTCTGCAA+CGG | 0.564781 | 3.4:+51139620 | MS.gene73141:CDS |
| AATGATAAATAGGTCTGAGA+AGG | 0.567578 | 3.4:+51139441 | MS.gene73141:intron |
| CGGTCTCCTCCAATTTCTCA+AGG | 0.568939 | 3.4:-51139752 | None:intergenic |
| TGCATGCTATTAGCAGTGAT+TGG | 0.573326 | 3.4:+51140682 | MS.gene73141:CDS |
| CCTTTGACCTCAAATTTGCA+AGG | 0.577028 | 3.4:-51139486 | None:intergenic |
| TTTCTAACAGAGCAAGATGA+GGG | 0.582199 | 3.4:+51139729 | MS.gene73141:intron |
| CTGCAACGGCAAGTTATGAA+AGG | 0.592264 | 3.4:+51139634 | MS.gene73141:CDS |
| TGAGGGCCTTGAGAAATTGG+AGG | 0.594430 | 3.4:+51139746 | MS.gene73141:CDS |
| AAGTACAAAACATATTGCGT+TGG | 0.595524 | 3.4:+51139779 | MS.gene73141:CDS |
| TGTCACAGATTCTCGGCTGA+GGG | 0.596979 | 3.4:+51139958 | MS.gene73141:CDS |
| GATGCAATGAGCAGAACTGT+TGG | 0.597248 | 3.4:+51139586 | MS.gene73141:CDS |
| TTAAACAAACGTACTAAGGG+TGG | 0.598231 | 3.4:+51140646 | MS.gene73141:CDS |
| AATGAGCAGAACTGTTGGCT+TGG | 0.609524 | 3.4:+51139591 | MS.gene73141:CDS |
| GAAGGAAAATCACAATATTG+GGG | 0.609732 | 3.4:+51139094 | MS.gene73141:CDS |
| AGCTGAATACTCACTTTACA+GGG | 0.612522 | 3.4:-51139155 | None:intergenic |
| GAGTCTGAAGAAGATGCCAT+TGG | 0.624414 | 3.4:-51138952 | None:intergenic |
| ACTGTTGGCTTGGATAACAA+TGG | 0.640180 | 3.4:+51139601 | MS.gene73141:CDS |
| GAAGGAGATGAATCGTCGCA+AGG | 0.666742 | 3.4:+51139459 | MS.gene73141:CDS |
| AAACTTGCTGATGATATCAG+TGG | 0.699595 | 3.4:+51139003 | MS.gene73141:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTATAATTATATGAAAA+TGG | - | chr3.4:51139310-51139329 | None:intergenic | 10.0% |
| !! | ATAATTATATGAAAATGGTA+AGG | - | chr3.4:51139305-51139324 | None:intergenic | 15.0% |
| !! | GGAAATATAATCATTAATTT+GGG | + | chr3.4:51140231-51140250 | MS.gene73141:intron | 15.0% |
| !! | TATAAATTATTGAATATCTG+TGG | + | chr3.4:51140392-51140411 | MS.gene73141:intron | 15.0% |
| !! | TGGAAATATAATCATTAATT+TGG | + | chr3.4:51140230-51140249 | MS.gene73141:intron | 15.0% |
| !!! | AAGATAAAATTGTCATTTTT+CGG | + | chr3.4:51140426-51140445 | MS.gene73141:intron | 15.0% |
| !!! | AATATGTTTTGTACTTAATA+CGG | - | chr3.4:51139775-51139794 | None:intergenic | 15.0% |
| !! | AAAAAAACTTAAAAGGGAAA+AGG | - | chr3.4:51140521-51140540 | None:intergenic | 20.0% |
| !! | CAAAATACTTATCAGAATTA+AGG | - | chr3.4:51140127-51140146 | None:intergenic | 20.0% |
| !! | TTAGCAAAGAAAATTAACAT+AGG | - | chr3.4:51139855-51139874 | None:intergenic | 20.0% |
| !! | TTCTTTGTCAAATGATAAAT+AGG | + | chr3.4:51139431-51139450 | MS.gene73141:intron | 20.0% |
| !!! | AAATAGATGTACCATATTTT+TGG | + | chr3.4:51140191-51140210 | MS.gene73141:intron | 20.0% |
| !!! | AATTTTAAACAAACGTACTA+AGG | + | chr3.4:51140642-51140661 | MS.gene73141:CDS | 20.0% |
| !!! | ATTTTAAACAAACGTACTAA+GGG | + | chr3.4:51140643-51140662 | MS.gene73141:CDS | 20.0% |
| !!! | TGAATCTTTTATTTTCTTCT+AGG | + | chr3.4:51139913-51139932 | MS.gene73141:intron | 20.0% |
| !!! | TTATTCTGAAAAATGTTTTG+TGG | + | chr3.4:51139261-51139280 | MS.gene73141:intron | 20.0% |
| ! | AAGAAGGAAAATCACAATAT+TGG | + | chr3.4:51139092-51139111 | MS.gene73141:CDS | 25.0% |
| ! | AGAAGGAAAATCACAATATT+GGG | + | chr3.4:51139093-51139112 | MS.gene73141:CDS | 25.0% |
| ! | CAAAGAAAATTAACATAGGA+TGG | - | chr3.4:51139851-51139870 | None:intergenic | 25.0% |
| ! | GTAAACTTACATAGTTAACT+AGG | + | chr3.4:51140363-51140382 | MS.gene73141:intron | 25.0% |
| ! | TATCACAAAAGAAACAGAAA+AGG | - | chr3.4:51140598-51140617 | None:intergenic | 25.0% |
| !! | AAGTATTTTGTCTCAGAATT+AGG | + | chr3.4:51140137-51140156 | MS.gene73141:intron | 25.0% |
| !! | ATCTATTTGAAATGTCAGAT+TGG | - | chr3.4:51140179-51140198 | None:intergenic | 25.0% |
| !! | GAAATACATAATTTGTGCTT+TGG | + | chr3.4:51139685-51139704 | MS.gene73141:intron | 25.0% |
| !!! | AAAAAGCATCATATTACTAC+AGG | - | chr3.4:51139243-51139262 | None:intergenic | 25.0% |
| !!! | ATGTTGTTACTTTTTGTATG+AGG | + | chr3.4:51140316-51140335 | MS.gene73141:intron | 25.0% |
| AAATGGTAAGGAGATAGATA+TGG | - | chr3.4:51139293-51139312 | None:intergenic | 30.0% | |
| AAGTACAAAACATATTGCGT+TGG | + | chr3.4:51139779-51139798 | MS.gene73141:CDS | 30.0% | |
| AATGATAAATAGGTCTGAGA+AGG | + | chr3.4:51139441-51139460 | MS.gene73141:intron | 30.0% | |
| ACATGTCAAACTTTGCAAAT+AGG | + | chr3.4:51139533-51139552 | MS.gene73141:CDS | 30.0% | |
| CATAATTCATTTCCTTCATC+TGG | + | chr3.4:51139039-51139058 | MS.gene73141:CDS | 30.0% | |
| CATGTCAAACTTTGCAAATA+GGG | + | chr3.4:51139534-51139553 | MS.gene73141:CDS | 30.0% | |
| CGTACATCAAACCAAAAATA+TGG | - | chr3.4:51140205-51140224 | None:intergenic | 30.0% | |
| GAAGGAAAATCACAATATTG+GGG | + | chr3.4:51139094-51139113 | MS.gene73141:CDS | 30.0% | |
| TATATGCCTAAAGAAAGTTG+TGG | - | chr3.4:51139995-51140014 | None:intergenic | 30.0% | |
| TTGTTTACCCTGATTAAGAA+AGG | + | chr3.4:51139179-51139198 | MS.gene73141:intron | 30.0% | |
| ! | ATTGCATCTGGTTTAATTTC+TGG | - | chr3.4:51139574-51139593 | None:intergenic | 30.0% |
| !! | TGTGCTTTGGATATTGATTT+CGG | + | chr3.4:51139698-51139717 | MS.gene73141:intron | 30.0% |
| !!! | AAAATTGTCATTTTTCGGCT+AGG | + | chr3.4:51140431-51140450 | MS.gene73141:intron | 30.0% |
| !!! | TATTTTCTTCTAGGATGACT+TGG | + | chr3.4:51139922-51139941 | MS.gene73141:intron | 30.0% |
| AGCTGAATACTCACTTTACA+GGG | - | chr3.4:51139158-51139177 | None:intergenic | 35.0% | |
| ATGTAGATGTCACAGATTCT+CGG | + | chr3.4:51139951-51139970 | MS.gene73141:CDS | 35.0% | |
| ATTAGCAGTGATTGGTATAG+TGG | + | chr3.4:51140690-51140709 | MS.gene73141:CDS | 35.0% | |
| CTCTTACCACAACTTTCTTT+AGG | + | chr3.4:51139986-51140005 | MS.gene73141:intron | 35.0% | |
| TGTTCAAAGTTGAAGCCATT+TGG | - | chr3.4:51139516-51139535 | None:intergenic | 35.0% | |
| TTAAACAAACGTACTAAGGG+TGG | + | chr3.4:51140646-51140665 | MS.gene73141:CDS | 35.0% | |
| TTACCCTGATTAAGAAAGGA+TGG | + | chr3.4:51139183-51139202 | MS.gene73141:intron | 35.0% | |
| TTAGCAGTGATTGGTATAGT+GGG | + | chr3.4:51140691-51140710 | MS.gene73141:CDS | 35.0% | |
| TTTCTAACAGAGCAAGATGA+GGG | + | chr3.4:51139729-51139748 | MS.gene73141:intron | 35.0% | |
| ! | TTGGATAACAATGGACTTGT+TGG | + | chr3.4:51139610-51139629 | MS.gene73141:CDS | 35.0% |
| ! | TTGGTTTGATGTACGTTGTT+TGG | + | chr3.4:51140210-51140229 | MS.gene73141:intron | 35.0% |
| ! | TTTTCTAACAGAGCAAGATG+AGG | + | chr3.4:51139728-51139747 | MS.gene73141:intron | 35.0% |
| !! | AAACTTGCTGATGATATCAG+TGG | + | chr3.4:51139003-51139022 | MS.gene73141:CDS | 35.0% |
| AGCACCATCCTTTCTTAATC+AGG | - | chr3.4:51139190-51139209 | None:intergenic | 40.0% | |
| AGGACAACCTTGCAAATTTG+AGG | + | chr3.4:51139479-51139498 | MS.gene73141:CDS | 40.0% | |
| ATGTCAGATTGGTGAGTATG+TGG | - | chr3.4:51140168-51140187 | None:intergenic | 40.0% | |
| CAGCTGAATACTCACTTTAC+AGG | - | chr3.4:51139159-51139178 | None:intergenic | 40.0% | |
| CCTTTGACCTCAAATTTGCA+AGG | - | chr3.4:51139489-51139508 | None:intergenic | 40.0% | |
| GAGGTCAAAGGTTAACCAAA+TGG | + | chr3.4:51139498-51139517 | MS.gene73141:CDS | 40.0% | |
| GCACCATCCTTTCTTAATCA+GGG | - | chr3.4:51139189-51139208 | None:intergenic | 40.0% | |
| GGATTGCAAGCTATCTAATC+GGG | - | chr3.4:51139121-51139140 | None:intergenic | 40.0% | |
| GGGATTGCAAGCTATCTAAT+CGG | - | chr3.4:51139122-51139141 | None:intergenic | 40.0% | |
| GTCATGCATCTGCTATAAGA+AGG | + | chr3.4:51139076-51139095 | MS.gene73141:CDS | 40.0% | |
| TACTACAGGACATTGAGTTC+AGG | - | chr3.4:51139229-51139248 | None:intergenic | 40.0% | |
| TGCATGCTATTAGCAGTGAT+TGG | + | chr3.4:51140682-51140701 | MS.gene73141:CDS | 40.0% | |
| TGTCAGATTGGTGAGTATGT+GGG | - | chr3.4:51140167-51140186 | None:intergenic | 40.0% | |
| TTCTTCAGACTCATGGTTGA+AGG | + | chr3.4:51138963-51138982 | MS.gene73141:CDS | 40.0% | |
| ! | CCTTGCAAATTTGAGGTCAA+AGG | + | chr3.4:51139486-51139505 | MS.gene73141:CDS | 40.0% |
| ! | TACAGGGAGCTTTGACAAAA+GGG | - | chr3.4:51139142-51139161 | None:intergenic | 40.0% |
| ! | TGTCTTCTTTTGAGCTGCAA+AGG | + | chr3.4:51139384-51139403 | MS.gene73141:intron | 40.0% |
| ! | TTACAGGGAGCTTTGACAAA+AGG | - | chr3.4:51139143-51139162 | None:intergenic | 40.0% |
| !! | ACTGTTGGCTTGGATAACAA+TGG | + | chr3.4:51139601-51139620 | MS.gene73141:CDS | 40.0% |
| !! | AGTGATTGGTATAGTGGGTT+TGG | + | chr3.4:51140696-51140715 | MS.gene73141:CDS | 40.0% |
| !! | ATGGTGCTATTACAGCAATG+AGG | + | chr3.4:51139202-51139221 | MS.gene73141:intron | 40.0% |
| !! | CAAATAGGGATAGTTTGCTC+GGG | + | chr3.4:51139548-51139567 | MS.gene73141:CDS | 40.0% |
| !! | GCAAATAGGGATAGTTTGCT+CGG | + | chr3.4:51139547-51139566 | MS.gene73141:CDS | 40.0% |
| !! | GCTTTGGATATTGATTTCGG+AGG | + | chr3.4:51139701-51139720 | MS.gene73141:intron | 40.0% |
| !! | TGGGTTTGGTTCTTGTCATA+TGG | + | chr3.4:51140710-51140729 | MS.gene73141:CDS | 40.0% |
| !!! | ATTGTCATTTTTCGGCTAGG+TGG | + | chr3.4:51140434-51140453 | MS.gene73141:intron | 40.0% |
| !!! | TTGTCATTTTTCGGCTAGGT+GGG | + | chr3.4:51140435-51140454 | MS.gene73141:intron | 40.0% |
| ACAGTTCTGCTCATTGCATC+TGG | - | chr3.4:51139586-51139605 | None:intergenic | 45.0% | |
| AGATGAGGGCCTTGAGAAAT+TGG | + | chr3.4:51139743-51139762 | MS.gene73141:CDS | 45.0% | |
| ATGTCATTCATGGATCTGGG+GGG | + | chr3.4:51140283-51140302 | MS.gene73141:intron | 45.0% | |
| CATGTCATTCATGGATCTGG+GGG | + | chr3.4:51140282-51140301 | MS.gene73141:intron | 45.0% | |
| CCATGTCATTCATGGATCTG+GGG | + | chr3.4:51140281-51140300 | MS.gene73141:intron | 45.0% | |
| CTGCAACGGCAAGTTATGAA+AGG | + | chr3.4:51139634-51139653 | MS.gene73141:CDS | 45.0% | |
| GATGCAATGAGCAGAACTGT+TGG | + | chr3.4:51139586-51139605 | MS.gene73141:CDS | 45.0% | |
| GATGCATGACGTTGTGTTTC+TGG | - | chr3.4:51139066-51139085 | None:intergenic | 45.0% | |
| GCCATGTCATTCATGGATCT+GGG | + | chr3.4:51140280-51140299 | MS.gene73141:intron | 45.0% | |
| GGTTCTTGTCATATGGCTTC+TGG | + | chr3.4:51140717-51140736 | MS.gene73141:CDS | 45.0% | |
| GTTGTACGCCATGTCATTCA+TGG | + | chr3.4:51140273-51140292 | MS.gene73141:intron | 45.0% | |
| TGGCATCTTCTTCAGACTCA+TGG | + | chr3.4:51138956-51138975 | MS.gene73141:CDS | 45.0% | |
| ! | AATGAGCAGAACTGTTGGCT+TGG | + | chr3.4:51139591-51139610 | MS.gene73141:CDS | 45.0% |
| ! | ACAGAGAGTGCAGAAGAACT+TGG | + | chr3.4:51140618-51140637 | MS.gene73141:intron | 45.0% |
| !! | ATGGACTTGTTGGTCTGCAA+CGG | + | chr3.4:51139620-51139639 | MS.gene73141:CDS | 45.0% |
| !! | TGTGTTTCTGGTCCAGATGA+AGG | - | chr3.4:51139054-51139073 | None:intergenic | 45.0% |
| !!! | TGTCATTTTTCGGCTAGGTG+GGG | + | chr3.4:51140436-51140455 | MS.gene73141:intron | 45.0% |
| !! | TAAAAAAAAAAAACTTAAAA+GGG | - | chr3.4:51140527-51140546 | None:intergenic | 5.0% |
| !! | TTAAAAAAAAAAAACTTAAA+AGG | - | chr3.4:51140528-51140547 | None:intergenic | 5.0% |
| ATGTCACAGATTCTCGGCTG+AGG | + | chr3.4:51139957-51139976 | MS.gene73141:CDS | 50.0% | |
| CCCCAGATCCATGAATGACA+TGG | - | chr3.4:51140284-51140303 | None:intergenic | 50.0% | |
| CGCCATGTCATTCATGGATC+TGG | + | chr3.4:51140279-51140298 | MS.gene73141:intron | 50.0% | |
| CGGTCTCCTCCAATTTCTCA+AGG | - | chr3.4:51139755-51139774 | None:intergenic | 50.0% | |
| GAAGGAGATGAATCGTCGCA+AGG | + | chr3.4:51139459-51139478 | MS.gene73141:CDS | 50.0% | |
| TCATGGATCTGGGGGGATTT+GGG | + | chr3.4:51140290-51140309 | MS.gene73141:intron | 50.0% | |
| TGAGGGCCTTGAGAAATTGG+AGG | + | chr3.4:51139746-51139765 | MS.gene73141:CDS | 50.0% | |
| TGTCACAGATTCTCGGCTGA+GGG | + | chr3.4:51139958-51139977 | MS.gene73141:CDS | 50.0% | |
| TTCATGGATCTGGGGGGATT+TGG | + | chr3.4:51140289-51140308 | MS.gene73141:intron | 50.0% | |
| !!! | GTCATTTTTCGGCTAGGTGG+GGG | + | chr3.4:51140437-51140456 | MS.gene73141:intron | 50.0% |
| TTCGGCTAGGTGGGGGTGAT+GGG | + | chr3.4:51140444-51140463 | MS.gene73141:intron | 60.0% | |
| TTTCGGCTAGGTGGGGGTGA+TGG | + | chr3.4:51140443-51140462 | MS.gene73141:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 51138955 | 51140753 | 51138955 | ID=MS.gene73141 |
| chr3.4 | mRNA | 51138955 | 51140753 | 51138955 | ID=MS.gene73141.t1;Parent=MS.gene73141 |
| chr3.4 | exon | 51138955 | 51139163 | 51138955 | ID=MS.gene73141.t1.exon1;Parent=MS.gene73141.t1 |
| chr3.4 | CDS | 51138955 | 51139163 | 51138955 | ID=cds.MS.gene73141.t1;Parent=MS.gene73141.t1 |
| chr3.4 | exon | 51139453 | 51139655 | 51139453 | ID=MS.gene73141.t1.exon2;Parent=MS.gene73141.t1 |
| chr3.4 | CDS | 51139453 | 51139655 | 51139453 | ID=cds.MS.gene73141.t1;Parent=MS.gene73141.t1 |
| chr3.4 | exon | 51139739 | 51139839 | 51139739 | ID=MS.gene73141.t1.exon3;Parent=MS.gene73141.t1 |
| chr3.4 | CDS | 51139739 | 51139839 | 51139739 | ID=cds.MS.gene73141.t1;Parent=MS.gene73141.t1 |
| chr3.4 | exon | 51139935 | 51139979 | 51139935 | ID=MS.gene73141.t1.exon4;Parent=MS.gene73141.t1 |
| chr3.4 | CDS | 51139935 | 51139979 | 51139935 | ID=cds.MS.gene73141.t1;Parent=MS.gene73141.t1 |
| chr3.4 | exon | 51140622 | 51140753 | 51140622 | ID=MS.gene73141.t1.exon5;Parent=MS.gene73141.t1 |
| chr3.4 | CDS | 51140622 | 51140753 | 51140622 | ID=cds.MS.gene73141.t1;Parent=MS.gene73141.t1 |
| Gene Sequence |
| Protein sequence |
