AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene031140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031140.t1 MTR_6g013840 98.687 533 7 0 1 533 1 533 0.0 1101
MS.gene031140.t1 MTR_7g012370 87.954 523 58 1 1 518 1 523 0.0 956
MS.gene031140.t1 MTR_7g012370 88.288 444 47 1 1 439 1 444 0.0 806
MS.gene031140.t1 MTR_2g082650 51.977 531 253 2 1 530 10 539 0.0 589
MS.gene031140.t1 MTR_2g082650 55.283 407 182 0 124 530 4 410 1.45e-180 514
MS.gene031140.t1 MTR_4g133570 47.305 501 206 4 33 530 17 462 8.80e-164 473
MS.gene031140.t1 MTR_3g452360 46.016 502 252 5 33 531 44 529 3.10e-159 464
MS.gene031140.t1 MTR_3g452360 48.974 390 186 2 145 531 1 380 1.15e-135 398
MS.gene031140.t1 MTR_8g092000 42.956 433 216 7 105 530 170 578 3.97e-119 363
MS.gene031140.t1 MTR_2g015550 41.463 451 224 10 92 529 108 531 3.24e-118 359
MS.gene031140.t1 MTR_7g075840 44.524 420 208 7 116 532 267 664 1.13e-117 362
MS.gene031140.t1 MTR_2g027740 42.404 441 231 8 92 530 246 665 2.29e-116 358
MS.gene031140.t1 MTR_3g107930 40.930 430 233 6 101 530 178 586 2.04e-113 348
MS.gene031140.t1 MTR_3g107930 40.930 430 233 6 101 530 255 663 1.92e-112 348
MS.gene031140.t1 MTR_8g033360 43.570 381 198 6 116 496 234 597 8.51e-108 338
MS.gene031140.t1 MTR_4g109890 39.225 413 232 5 116 528 139 532 2.45e-105 326
MS.gene031140.t1 MTR_7g055600 42.308 416 215 9 119 530 38 432 2.65e-104 320
MS.gene031140.t1 MTR_7g057530 42.308 416 215 9 119 530 38 432 2.65e-104 320
MS.gene031140.t1 MTR_6g016380 40.291 412 224 7 120 529 161 552 3.16e-96 303
MS.gene031140.t1 MTR_2g006790 40.050 402 197 7 129 529 149 507 6.98e-96 301
MS.gene031140.t1 MTR_2g461670 36.627 415 244 6 116 530 194 589 1.03e-95 303
MS.gene031140.t1 MTR_7g096160 33.831 402 223 5 130 530 293 652 1.69e-82 270
MS.gene031140.t1 MTR_1g070490 32.353 408 221 8 133 532 239 599 4.80e-62 214
MS.gene031140.t1 MTR_7g074680 34.054 370 202 9 166 530 231 563 9.87e-54 191
MS.gene031140.t1 MTR_7g074680 34.054 370 202 9 166 530 271 603 1.85e-53 191
MS.gene031140.t1 MTR_7g074680 34.054 370 202 9 166 530 291 623 2.41e-53 191
MS.gene031140.t1 MTR_7g074680 34.054 370 202 9 166 530 291 623 3.20e-53 191
MS.gene031140.t1 MTR_7g074680 34.054 370 202 9 166 530 328 660 3.89e-53 191
MS.gene031140.t1 MTR_7g074680 34.054 370 202 9 166 530 311 643 4.46e-53 191
MS.gene031140.t1 MTR_4g133942 42.512 207 82 4 327 530 160 332 2.23e-43 157
MS.gene031140.t1 MTR_4g118030 32.418 182 112 5 329 505 145 320 3.66e-24 103
MS.gene031140.t1 MTR_5g036580 28.125 352 195 16 181 520 54 359 3.96e-23 102
MS.gene031140.t1 MTR_3g092310 31.383 188 105 7 329 505 140 314 1.29e-20 93.6
MS.gene031140.t1 MTR_7g094230 29.670 182 116 6 329 505 151 325 1.50e-20 93.6
MS.gene031140.t1 MTR_3g111600 29.949 197 124 7 329 517 80 270 8.61e-20 90.1
MS.gene031140.t1 MTR_6g008900 30.939 181 112 6 329 502 165 339 2.46e-19 90.1
MS.gene031140.t1 MTR_4g071620 30.939 181 112 6 329 502 165 339 2.46e-19 90.1
MS.gene031140.t1 MTR_7g109210 31.844 179 110 7 329 502 159 330 2.63e-19 90.1
MS.gene031140.t1 MTR_8g078240 28.571 203 121 8 329 517 142 334 5.63e-18 85.9
MS.gene031140.t1 MTR_1g021855 25.237 317 179 13 211 517 88 356 8.47e-17 82.4
MS.gene031140.t1 MTR_1g089820 30.387 181 116 5 329 505 154 328 9.71e-17 82.4
MS.gene031140.t1 MTR_5g019220 27.411 197 129 6 329 517 166 356 3.49e-16 80.9
MS.gene031140.t1 MTR_4g081360 45.833 72 23 1 462 533 4 59 9.54e-15 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031140.t1 AT5G15470 84.398 532 83 0 1 532 1 532 0.0 946
MS.gene031140.t1 AT3G01040 84.023 532 85 0 1 532 1 532 0.0 943
MS.gene031140.t1 AT3G01040 84.023 532 85 0 1 532 1 532 0.0 943
MS.gene031140.t1 AT3G01040 78.759 532 80 1 1 532 1 499 0.0 865
MS.gene031140.t1 AT5G54690 52.150 535 254 2 1 533 1 535 0.0 587
MS.gene031140.t1 AT3G58790 45.703 512 250 9 34 531 42 539 1.21e-149 440
MS.gene031140.t1 AT3G58790 48.309 414 201 4 124 531 1 407 3.40e-139 408
MS.gene031140.t1 AT3G61130 40.481 457 233 7 83 532 249 673 1.37e-123 377
MS.gene031140.t1 AT5G47780 43.590 429 220 8 103 530 207 614 6.12e-123 374
MS.gene031140.t1 AT3G25140 42.353 425 223 8 106 529 153 556 1.30e-113 348
MS.gene031140.t1 AT4G38270 40.991 444 234 8 100 532 254 680 2.18e-113 351
MS.gene031140.t1 AT4G38270 40.991 444 234 8 100 532 250 676 2.70e-113 351
MS.gene031140.t1 AT1G18580 38.824 425 233 6 114 528 127 534 1.81e-110 339
MS.gene031140.t1 AT2G46480 40.000 435 241 5 101 532 123 540 5.73e-108 333
MS.gene031140.t1 AT2G46480 40.000 435 241 5 101 532 136 553 7.97e-108 333
MS.gene031140.t1 AT2G20810 43.521 409 199 10 129 529 150 534 5.73e-104 322
MS.gene031140.t1 AT2G46480 37.241 435 228 5 101 532 123 515 2.97e-96 302
MS.gene031140.t1 AT2G46480 37.241 435 228 5 101 532 136 528 3.00e-96 302
MS.gene031140.t1 AT3G02350 40.233 430 225 6 115 530 148 559 8.56e-96 302
MS.gene031140.t1 AT1G06780 34.879 453 245 8 88 530 175 587 2.81e-87 281
MS.gene031140.t1 AT1G06780 34.879 453 245 8 88 530 188 600 3.63e-87 281
MS.gene031140.t1 AT2G30575 35.240 437 236 7 101 530 212 608 1.30e-85 277
MS.gene031140.t1 AT2G38650 31.004 458 270 9 82 530 197 617 2.35e-60 210
MS.gene031140.t1 AT2G38650 31.004 458 270 9 82 530 197 617 2.35e-60 210
MS.gene031140.t1 AT2G38650 31.063 367 208 8 82 439 197 527 9.50e-39 149
MS.gene031140.t1 AT1G70090 25.936 374 222 15 164 526 39 368 1.02e-23 103
MS.gene031140.t1 AT1G70090 25.936 374 222 15 164 526 39 368 1.02e-23 103
MS.gene031140.t1 AT4G02130 30.288 208 127 7 329 529 150 346 4.41e-23 100
MS.gene031140.t1 AT4G02130 30.288 208 127 7 329 529 150 346 4.41e-23 100
MS.gene031140.t1 AT4G02130 30.288 208 127 7 329 529 150 346 4.41e-23 100
MS.gene031140.t1 AT3G06260 28.649 185 114 6 329 505 150 324 5.96e-22 97.8
MS.gene031140.t1 AT1G24170 30.918 207 127 9 329 526 172 371 3.08e-21 96.3
MS.gene031140.t1 AT1G02720 23.839 323 194 9 211 529 87 361 6.40e-21 94.7
MS.gene031140.t1 AT1G02720 23.839 323 194 9 211 529 87 361 6.40e-21 94.7
MS.gene031140.t1 AT3G28340 30.978 184 117 6 327 505 153 331 1.44e-20 94.0
MS.gene031140.t1 AT3G62660 29.592 196 128 5 329 520 164 353 6.74e-20 92.0
MS.gene031140.t1 AT1G13250 26.776 366 205 14 168 517 15 333 8.91e-19 88.2
MS.gene031140.t1 AT3G50760 25.705 319 173 14 200 505 47 314 7.86e-18 85.5
MS.gene031140.t1 AT1G19300 27.919 197 128 7 329 517 150 340 3.70e-16 80.5

Find 125 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATTCGCTTTCATGTTAA+AGG 0.126539 6.2:-8934458 MS.gene031140:CDS
TTGAACATCTTAAACCATTT+TGG 0.154011 6.2:-8931639 MS.gene031140:CDS
TTCATCCAATTGACCCTTCT+TGG 0.214807 6.2:-8931768 MS.gene031140:CDS
GGATGAGGATAGTATGAAAA+AGG 0.268000 6.2:+8935905 None:intergenic
TTGACGTACTTGGTCCAAAA+TGG 0.281737 6.2:+8931625 None:intergenic
GTCAACAAGTGTTCCTCTTT+TGG 0.296774 6.2:-8935826 MS.gene031140:intron
GAGAGACAATTAATCCCTTT+AGG 0.301851 6.2:+8933627 None:intergenic
TCTTGGCACATGCTTGGTTT+AGG 0.308022 6.2:-8931751 MS.gene031140:CDS
CCAGCTTTGATTGCATTTAG+AGG 0.308527 6.2:-8931796 MS.gene031140:CDS
GATCTGAAAGGTAAAGTTAA+TGG 0.328018 6.2:-8932519 MS.gene031140:CDS
CGGTTAGGACCAAGGTTTCT+TGG 0.335420 6.2:-8934744 MS.gene031140:CDS
AAGTGTTGAAAATGTGAAAA+TGG 0.338980 6.2:-8931713 MS.gene031140:CDS
TATCAGTTGACAAAATAAAA+TGG 0.347420 6.2:+8933508 None:intergenic
AAAACCACCTTGTCAAGGTT+TGG 0.349334 6.2:+8932594 None:intergenic
TCCCCTCATTGCAAAGCATT+TGG 0.353518 6.2:-8932421 MS.gene031140:CDS
GACGAGTGTGCTTGGGCTTA+CGG 0.356516 6.2:-8932393 MS.gene031140:CDS
ACCAGATTCATTTGATCAAA+TGG 0.357296 6.2:-8934515 MS.gene031140:CDS
ACGAGTGTGCTTGGGCTTAC+GGG 0.359380 6.2:-8932392 MS.gene031140:CDS
TAACATGAAAGCGAATGTTT+TGG 0.359941 6.2:+8934462 None:intergenic
TTAGAGAGACATATCATTCC+TGG 0.366476 6.2:-8932329 MS.gene031140:CDS
ACTGCTGTTGTTACCCTTGA+AGG 0.367335 6.2:-8935850 MS.gene031140:CDS
CTTACGCGGGTATGCACTCT+TGG 0.369763 6.2:-8933392 MS.gene031140:CDS
AAACCACCTTGTCAAGGTTT+GGG 0.377869 6.2:+8932595 None:intergenic
CGCTTTCATGTTAAAGGGAA+TGG 0.380532 6.2:-8934452 MS.gene031140:intron
TTGTCTCTCCCTGCGTTTGA+CGG 0.382686 6.2:-8933613 MS.gene031140:CDS
AGAGACAATTAATCCCTTTA+GGG 0.383279 6.2:+8933628 None:intergenic
TAAGCCCAAGCACACTCGTC+AGG 0.385142 6.2:+8932396 None:intergenic
TCAAAACCCTGGTTAGAGAT+TGG 0.389329 6.2:-8931664 MS.gene031140:CDS
TCTGGTAGCTTTAAACTAGA+TGG 0.389890 6.2:+8934532 None:intergenic
GAAGCTGTAGAAAGTCAAAA+TGG 0.390177 6.2:-8933279 MS.gene031140:CDS
CAGCTAGTTCCGTCCCTAAA+GGG 0.392610 6.2:-8933641 MS.gene031140:CDS
ACCATTTGATCAAATGAATC+TGG 0.400561 6.2:+8934514 None:intergenic
GACCCTTCTTGGCACATGCT+TGG 0.403772 6.2:-8931757 MS.gene031140:CDS
TTTGTCAACTGATAACATCT+TGG 0.408826 6.2:-8933499 MS.gene031140:CDS
TGGACCCTGACGAGTGTGCT+TGG 0.412842 6.2:-8932401 MS.gene031140:CDS
CCATTCATCTTCGCCTCTGC+AGG 0.414627 6.2:+8932485 None:intergenic
TTCAGATCCATTTCCCATAG+TGG 0.415989 6.2:+8932534 None:intergenic
ACATTCGCTTTCATGTTAAA+GGG 0.420527 6.2:-8934457 MS.gene031140:CDS
TAGAAAGTCAAAATGGAATC+AGG 0.420648 6.2:-8933272 MS.gene031140:CDS
ATTTGAATAATTGACGTACT+TGG 0.420726 6.2:+8931615 None:intergenic
CTTGTCTCCACTATGGGAAA+TGG 0.424337 6.2:-8932541 MS.gene031140:CDS
GGACCCTGACGAGTGTGCTT+GGG 0.437564 6.2:-8932400 MS.gene031140:CDS
CCTGCAGAGGCGAAGATGAA+TGG 0.439534 6.2:-8932485 MS.gene031140:CDS
TGTTAGGAACTGTCATATCA+TGG 0.445538 6.2:-8931587 MS.gene031140:CDS
CGATGCAAATTTACGCGGAC+TGG 0.446443 6.2:+8933203 None:intergenic
AACACTTGTTGACACCTTCA+AGG 0.448025 6.2:+8935836 None:intergenic
ATACTCAACGAAGTGAAAAC+CGG 0.449343 6.2:-8934562 MS.gene031140:CDS
CTCCAGATTGTTTAGGTAGA+CGG 0.465850 6.2:-8934764 MS.gene031140:intron
TTGAGTAGAGATATGTACTT+TGG 0.466680 6.2:+8933162 None:intergenic
GCAGCTAGTTCCGTCCCTAA+AGG 0.466800 6.2:-8933642 MS.gene031140:CDS
GATTGTTTAGGTAGACGGTT+AGG 0.482503 6.2:-8934759 MS.gene031140:CDS
GTCCAAATGCTTTGCAATGA+GGG 0.482612 6.2:+8932419 None:intergenic
AAGGCATTCATCAGTTTGAC+TGG 0.484525 6.2:-8933329 MS.gene031140:CDS
AGCGTGACTTGTCTCCACTA+TGG 0.487829 6.2:-8932548 MS.gene031140:CDS
CGGACTGGTATCACTGAGAT+TGG 0.490436 6.2:+8933218 None:intergenic
TATTGACTTGATGAAGATCA+AGG 0.490549 6.2:-8935956 MS.gene031140:CDS
CTGCAGAGGCGAAGATGAAT+GGG 0.490749 6.2:-8932484 MS.gene031140:CDS
CTTTCTACAGCTTCAAGTAC+CGG 0.492320 6.2:+8933288 None:intergenic
CTACCATGGGAATCATATGA+TGG 0.494537 6.2:-8933244 MS.gene031140:CDS
AAACCAAGCATGTGCCAAGA+AGG 0.496716 6.2:+8931754 None:intergenic
AATGCTTTGCAATGAGGGGA+TGG 0.500809 6.2:+8932424 None:intergenic
TGCAATCAAAGCTGGAGGTA+GGG 0.504163 6.2:+8931804 None:intergenic
GCGTGACTTGTCTCCACTAT+GGG 0.506516 6.2:-8932547 MS.gene031140:CDS
ATGTGCCAAGAAGGGTCAAT+TGG 0.506954 6.2:+8931763 None:intergenic
GCAGTGAGAATGAAGACAAA+AGG 0.512223 6.2:+8935868 None:intergenic
CCTTTGACTTCAACAATAGC+AGG 0.512844 6.2:+8933348 None:intergenic
CCTCTAAATGCAATCAAAGC+TGG 0.515559 6.2:+8931796 None:intergenic
TAGGACCAAGGTTTCTTGGA+AGG 0.519788 6.2:-8934740 MS.gene031140:CDS
AAAATGGTGGAAAGAGTTGT+CGG 0.520427 6.2:+8933524 None:intergenic
CAGAGACGATTGTACGGTAG+AGG 0.520854 6.2:+8933458 None:intergenic
GTTAACTAGAGAAAATGTTC+CGG 0.520998 6.2:-8933307 MS.gene031140:CDS
TAAACTAGATGGAACTTCCC+CGG 0.530983 6.2:+8934543 None:intergenic
ATGCAATCAAAGCTGGAGGT+AGG 0.533662 6.2:+8931803 None:intergenic
TTCAAAACCAATCTCTAACC+AGG 0.538355 6.2:+8931657 None:intergenic
AGTATTCATCCGTCAAACGC+AGG 0.538404 6.2:+8933604 None:intergenic
CCTGCTATTGTTGAAGTCAA+AGG 0.539912 6.2:-8933348 MS.gene031140:CDS
AGGACCAAGGTTTCTTGGAA+GGG 0.540524 6.2:-8934739 MS.gene031140:CDS
TCACGATATCAAGCAACAAT+GGG 0.541351 6.2:-8935981 MS.gene031140:CDS
AACATGACAATGTGGAAGCT+CGG 0.543243 6.2:-8931829 MS.gene031140:CDS
ACGCAAACAATTGCCTCCTC+CGG 0.544910 6.2:-8933565 MS.gene031140:CDS
GACTTCAACAATAGCAGGTG+AGG 0.546866 6.2:+8933353 None:intergenic
ATCACGATATCAAGCAACAA+TGG 0.566171 6.2:-8935982 MS.gene031140:CDS
TACTCAACGAAGTGAAAACC+GGG 0.568890 6.2:-8934561 MS.gene031140:CDS
ATTGGTAGTAACTCCGGAGG+AGG 0.569825 6.2:+8933552 None:intergenic
ATGCTTTGCAATGAGGGGAT+GGG 0.570529 6.2:+8932425 None:intergenic
ATATCATTCCTGGCTTAAAG+AGG 0.573190 6.2:-8932319 MS.gene031140:intron
TACCATGGGAATCATATGAT+GGG 0.578652 6.2:-8933243 MS.gene031140:CDS
TCAAAACCAATCTCTAACCA+GGG 0.579436 6.2:+8931658 None:intergenic
GAGAGCATTGGTAGTAACTC+CGG 0.582594 6.2:+8933546 None:intergenic
GTATTCATCCGTCAAACGCA+GGG 0.582839 6.2:+8933605 None:intergenic
GGTCCAAATGCTTTGCAATG+AGG 0.583301 6.2:+8932418 None:intergenic
ATGAAAAGGAGTACCAAAAG+AGG 0.583626 6.2:+8935813 None:intergenic
ATCGTGATGCTTCTCATGCT+AGG 0.584628 6.2:+8935997 None:intergenic
AACCAAGCATGTGCCAAGAA+GGG 0.585551 6.2:+8931755 None:intergenic
AAGCCCAAGCACACTCGTCA+GGG 0.585973 6.2:+8932397 None:intergenic
TTCCCATCATATGATTCCCA+TGG 0.590016 6.2:+8933241 None:intergenic
TCAACCCTTCCAAGAAACCT+TGG 0.592557 6.2:+8934735 None:intergenic
TAGGTAGACGGTTAGGACCA+AGG 0.593215 6.2:-8934752 MS.gene031140:CDS
GAATCAGGAATTACTACCAT+GGG 0.594608 6.2:-8933257 MS.gene031140:CDS
AAAGAGTTGTCGGAGAGCAT+TGG 0.594891 6.2:+8933534 None:intergenic
GCTGCTGTTATTCATTACAA+TGG 0.594951 6.2:-8931691 MS.gene031140:CDS
AGGTAAAGTTAATGGAGCTG+TGG 0.595738 6.2:-8932511 MS.gene031140:CDS
ACACTTGTTGACACCTTCAA+GGG 0.596098 6.2:+8935837 None:intergenic
ACAATTAATCCCTTTAGGGA+CGG 0.597680 6.2:+8933632 None:intergenic
GGAATCAGGAATTACTACCA+TGG 0.608361 6.2:-8933258 MS.gene031140:CDS
AGGTTTCAGAGACGATTGTA+CGG 0.609883 6.2:+8933452 None:intergenic
ACTTCAACAATAGCAGGTGA+GGG 0.611455 6.2:+8933354 None:intergenic
CTATGGGAAATGGATCTGAA+AGG 0.611838 6.2:-8932531 MS.gene031140:CDS
ATGTCTTTGATCTTCGTGCA+TGG 0.621585 6.2:-8932365 MS.gene031140:CDS
ACAATGGCCAATCAAAACCC+TGG 0.622866 6.2:-8931675 MS.gene031140:CDS
TCCAAATGCTTTGCAATGAG+GGG 0.630439 6.2:+8932420 None:intergenic
TGGAAGGGTTGACGATTCAG+CGG 0.631662 6.2:-8934724 MS.gene031140:intron
GTTGTGTATGGCAGAATCTG+AGG 0.634657 6.2:-8931855 MS.gene031140:intron
CTAAATGCAATCAAAGCTGG+AGG 0.656439 6.2:+8931799 None:intergenic
TCAACAATAGCAGGTGAGGG+AGG 0.656534 6.2:+8933357 None:intergenic
CAGTTGACAAAATAAAATGG+TGG 0.662661 6.2:+8933511 None:intergenic
TTACCCAAACCTTGACAAGG+TGG 0.662757 6.2:-8932598 MS.gene031140:CDS
AATTTCGATGCAAATTTACG+CGG 0.665191 6.2:+8933198 None:intergenic
GCTTTACCCAAACCTTGACA+AGG 0.681111 6.2:-8932601 MS.gene031140:CDS
TGAGGTCAAACATGACAATG+TGG 0.682233 6.2:-8931837 MS.gene031140:CDS
TTACCTCAGGAATATATATG+CGG 0.688304 6.2:+8933133 None:intergenic
AGCATTGGTAGTAACTCCGG+AGG 0.693741 6.2:+8933549 None:intergenic
TATCCGCATATATATTCCTG+AGG 0.697760 6.2:-8933136 MS.gene031140:intron
GGAGCTGTGGAAACCTGCAG+AGG 0.699464 6.2:-8932498 MS.gene031140:CDS
ACTCAACGAAGTGAAAACCG+GGG 0.787995 6.2:-8934560 MS.gene031140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGTTGTATATTAATATATT+TGG - chr6.2:8935426-8935445 MS.gene031140:intron 10.0%
!!! ATATTAATATATTTGGTAAT+TGG - chr6.2:8935433-8935452 MS.gene031140:intron 10.0%
!!! ATTATTATTTTATGAGAAAA+TGG - chr6.2:8933576-8933595 MS.gene031140:CDS 10.0%
!!! CATTTTCTTAAATTTATTAT+CGG + chr6.2:8935527-8935546 None:intergenic 10.0%
!!! TTATTATTTTATGAGAAAAT+GGG - chr6.2:8933577-8933596 MS.gene031140:CDS 10.0%
!!! TTTAATCATTCAAAATTTTA+CGG - chr6.2:8935330-8935349 MS.gene031140:intron 10.0%
!! TTTGAATGATTAAATGATAT+TGG + chr6.2:8935324-8935343 None:intergenic 15.0%
!!! ATTAATCATAACAGAATTTT+CGG - chr6.2:8933794-8933813 MS.gene031140:intron 15.0%
!!! ATTATTCAAATGATTTTGTT+AGG - chr6.2:8935991-8936010 MS.gene031140:CDS 15.0%
!!! TTGATTTGAAATTTGAATAT+TGG - chr6.2:8931916-8931935 MS.gene031140:intron 15.0%
!! AATTAGTATTAATTCGTGAA+AGG - chr6.2:8933211-8933230 MS.gene031140:CDS 20.0%
!! ACTAACTATTAGATATGAAA+AGG + chr6.2:8933771-8933790 None:intergenic 20.0%
!! ATATATCAAAACAACATAAG+AGG + chr6.2:8931807-8931826 None:intergenic 20.0%
!! ATTAAATGATATTGGATTGA+GGG + chr6.2:8935316-8935335 None:intergenic 20.0%
!! ATTAGTATTAATTCGTGAAA+GGG - chr6.2:8933212-8933231 MS.gene031140:CDS 20.0%
!! CTAACTATTAGATATGAAAA+GGG + chr6.2:8933770-8933789 None:intergenic 20.0%
!! TATCAGTTGACAAAATAAAA+TGG + chr6.2:8934089-8934108 None:intergenic 20.0%
!! TTCACAAAAACATAATTTGA+AGG + chr6.2:8935694-8935713 None:intergenic 20.0%
!!! ATAGATAACCATTACTTTTA+TGG - chr6.2:8933372-8933391 MS.gene031140:CDS 20.0%
!!! ATTAACTTTTAGAACCAAAT+AGG + chr6.2:8932742-8932761 None:intergenic 20.0%
!!! GATAAACTTTTATTAGATGA+CGG - chr6.2:8933707-8933726 MS.gene031140:CDS 20.0%
!!! GTTTTTGTTATGATATATGT+TGG - chr6.2:8931839-8931858 MS.gene031140:CDS 20.0%
!!! TAATAATTTTCCTATGTCAT+TGG - chr6.2:8932382-8932401 MS.gene031140:CDS 20.0%
!!! TAATATATTTGGTAATTGGT+GGG - chr6.2:8935437-8935456 MS.gene031140:intron 20.0%
!!! TCTATTTCTCCAATTATTAT+TGG + chr6.2:8933466-8933485 None:intergenic 20.0%
!!! TGATAGTTATCTTTAAAAAG+CGG - chr6.2:8933657-8933676 MS.gene031140:CDS 20.0%
!!! TTAATATATTTGGTAATTGG+TGG - chr6.2:8935436-8935455 MS.gene031140:intron 20.0%
!!! TTGAAATAATAACACGTTTT+AGG - chr6.2:8933293-8933312 MS.gene031140:CDS 20.0%
!!! TTGAATCTTGAATTATTTTG+AGG - chr6.2:8932339-8932358 MS.gene031140:CDS 20.0%
! AAAAACAAGGAACCAATAAA+CGG + chr6.2:8932806-8932825 None:intergenic 25.0%
! AATGAAAAGGATAAGAACAA+AGG + chr6.2:8935669-8935688 None:intergenic 25.0%
! ATATGTTGGTCATTTGTATT+TGG - chr6.2:8931853-8931872 MS.gene031140:intron 25.0%
! ATCAGATACTCAATTCTTAT+TGG + chr6.2:8933641-8933660 None:intergenic 25.0%
! ATCCTAACTTACAAATAACA+TGG + chr6.2:8932091-8932110 None:intergenic 25.0%
! ATTTGAATAATTGACGTACT+TGG + chr6.2:8935982-8936001 None:intergenic 25.0%
! GACATAGGAAAATTATTAGT+TGG + chr6.2:8932380-8932399 None:intergenic 25.0%
! GATTAAATGATATTGGATTG+AGG + chr6.2:8935317-8935336 None:intergenic 25.0%
! TAATTTGAAGGTCAATGAAA+AGG + chr6.2:8935682-8935701 None:intergenic 25.0%
! TAGATATGAAAAGGGATTAA+TGG + chr6.2:8933762-8933781 None:intergenic 25.0%
! TAGTCACTGATAAACAATAT+TGG - chr6.2:8934757-8934776 MS.gene031140:CDS 25.0%
! TGAAAATGTCGTATCTATAT+TGG - chr6.2:8932413-8932432 MS.gene031140:CDS 25.0%
! TGTCATATCTAATTCACAAT+TGG - chr6.2:8932463-8932482 MS.gene031140:CDS 25.0%
! TTAAAAAGCGGTTATAATCT+AGG - chr6.2:8933669-8933688 MS.gene031140:CDS 25.0%
!! AAGTTGGTTAATCAAAACTT+TGG + chr6.2:8932948-8932967 None:intergenic 25.0%
!! ACATGGAAAACTATATTTTC+AGG + chr6.2:8934165-8934184 None:intergenic 25.0%
!! ATCCATGTTATTTGTAAGTT+AGG - chr6.2:8932086-8932105 MS.gene031140:intron 25.0%
!! CATTCAAAATTTTACGGTTT+TGG - chr6.2:8935336-8935355 MS.gene031140:intron 25.0%
!! TCGGTTATCAATATAAGTTT+TGG - chr6.2:8932650-8932669 MS.gene031140:intron 25.0%
!! TTGAACATCTTAAACCATTT+TGG - chr6.2:8935955-8935974 MS.gene031140:CDS 25.0%
!! TTTGGATATGAATCTCATTT+TGG - chr6.2:8932169-8932188 MS.gene031140:intron 25.0%
!!! AAGTGTTGAAAATGTGAAAA+TGG - chr6.2:8935881-8935900 MS.gene031140:CDS 25.0%
!!! ATTATTTTGAGGTTCACATA+TGG - chr6.2:8932350-8932369 MS.gene031140:CDS 25.0%
!!! TTTCTAGTGTGTTTCTATTT+TGG - chr6.2:8932151-8932170 MS.gene031140:intron 25.0%
AAAGATATGAGCATTCTATG+AGG + chr6.2:8933555-8933574 None:intergenic 30.0%
AACAACATAAGAGGATGAAA+AGG + chr6.2:8931798-8931817 None:intergenic 30.0%
AACATTCGCTTTCATGTTAA+AGG - chr6.2:8933136-8933155 MS.gene031140:intron 30.0%
AAGTGTTCATGTGTCAAAAT+GGG + chr6.2:8934908-8934927 None:intergenic 30.0%
AAGTTTCAATATTCAGAGAG+AGG + chr6.2:8934540-8934559 None:intergenic 30.0%
AATCTGGAGACAAAAAAACA+AGG + chr6.2:8932819-8932838 None:intergenic 30.0%
AATTTCGATGCAAATTTACG+CGG + chr6.2:8934399-8934418 None:intergenic 30.0%
ACATTCGCTTTCATGTTAAA+GGG - chr6.2:8933137-8933156 MS.gene031140:CDS 30.0%
ACCAGATTCATTTGATCAAA+TGG - chr6.2:8933079-8933098 MS.gene031140:intron 30.0%
ACCATTTGATCAAATGAATC+TGG + chr6.2:8933083-8933102 None:intergenic 30.0%
ACTGACATAGACATAAACAT+AGG - chr6.2:8935479-8935498 MS.gene031140:intron 30.0%
AGAAAACTTCCATAATCACA+AGG + chr6.2:8931993-8932012 None:intergenic 30.0%
AGAGACAATTAATCCCTTTA+GGG + chr6.2:8933969-8933988 None:intergenic 30.0%
AGAGTGATCCATAAAAGTAA+TGG + chr6.2:8933383-8933402 None:intergenic 30.0%
ATACAACAAAACATTGATGC+CGG + chr6.2:8935415-8935434 None:intergenic 30.0%
ATTGCATGTATGCAATATTG+AGG - chr6.2:8933420-8933439 MS.gene031140:CDS 30.0%
ATTTGTTTCCCTTGTGATTA+TGG - chr6.2:8931981-8932000 MS.gene031140:intron 30.0%
CACTTAAGATCCTAAAATGA+AGG + chr6.2:8932028-8932047 None:intergenic 30.0%
CAGTTGACAAAATAAAATGG+TGG + chr6.2:8934086-8934105 None:intergenic 30.0%
GAAAACTTCCATAATCACAA+GGG + chr6.2:8931992-8932011 None:intergenic 30.0%
GATCTGAAAGGTAAAGTTAA+TGG - chr6.2:8935075-8935094 MS.gene031140:intron 30.0%
GATGAGGATAGTATGAAAAA+GGG + chr6.2:8931691-8931710 None:intergenic 30.0%
GTTAACTAGAGAAAATGTTC+CGG - chr6.2:8934287-8934306 MS.gene031140:intron 30.0%
TAGAAAGTCAAAATGGAATC+AGG - chr6.2:8934322-8934341 MS.gene031140:intron 30.0%
TATATATTCCTGAGGTAAGT+TGG - chr6.2:8934466-8934485 MS.gene031140:CDS 30.0%
TATGTCAATGGAATTGTTTG+AGG - chr6.2:8931948-8931967 MS.gene031140:intron 30.0%
TGATATTAATGCTTCTGTAC+CGG - chr6.2:8935393-8935412 MS.gene031140:intron 30.0%
TGGATCAAAAGTTATGTCAA+TGG - chr6.2:8931936-8931955 MS.gene031140:intron 30.0%
TTACCTCAGGAATATATATG+CGG + chr6.2:8934464-8934483 None:intergenic 30.0%
TTCGTTATGTTACTCCTATT+TGG - chr6.2:8932725-8932744 MS.gene031140:intron 30.0%
TTGAGTAGAGATATGTACTT+TGG + chr6.2:8934435-8934454 None:intergenic 30.0%
TTTGTCAACTGATAACATCT+TGG - chr6.2:8934095-8934114 MS.gene031140:intron 30.0%
! ATTTTATACCTCTTTAAGCC+AGG + chr6.2:8935286-8935305 None:intergenic 30.0%
! GATCTAAGACTGTAGAAAAT+GGG - chr6.2:8934827-8934846 MS.gene031140:intron 30.0%
! GGGTAATGTCAAAACATTTT+AGG - chr6.2:8935130-8935149 MS.gene031140:intron 30.0%
! TAACATGAAAGCGAATGTTT+TGG + chr6.2:8933135-8933154 None:intergenic 30.0%
! TACTTTTATGGATCACTCTT+TGG - chr6.2:8933384-8933403 MS.gene031140:CDS 30.0%
! TGATCTAAGACTGTAGAAAA+TGG - chr6.2:8934826-8934845 MS.gene031140:intron 30.0%
! TGTGATTATGGAAGTTTTCT+AGG - chr6.2:8931993-8932012 MS.gene031140:intron 30.0%
! TGTGCTTTACAATTTAGAAC+TGG - chr6.2:8932603-8932622 MS.gene031140:CDS 30.0%
! TTTTTGTCTCCAGATTGTTT+AGG - chr6.2:8932823-8932842 MS.gene031140:intron 30.0%
!! AAGAAGCATTCAGATAAAGT+TGG + chr6.2:8932964-8932983 None:intergenic 30.0%
!! ATTTTCCTATGTCATTGGTT+TGG - chr6.2:8932387-8932406 MS.gene031140:CDS 30.0%
!! TATTGACTTGATGAAGATCA+AGG - chr6.2:8931638-8931657 MS.gene031140:CDS 30.0%
AATTCACAATTGGAATGCTC+CGG - chr6.2:8932473-8932492 MS.gene031140:CDS 35.0%
ACTTGAAATGTACCAACATG+TGG - chr6.2:8934611-8934630 MS.gene031140:intron 35.0%
ATACTCAACGAAGTGAAAAC+CGG - chr6.2:8933032-8933051 MS.gene031140:intron 35.0%
ATATCATTCCTGGCTTAAAG+AGG - chr6.2:8935275-8935294 MS.gene031140:intron 35.0%
ATCACGATATCAAGCAACAA+TGG - chr6.2:8931612-8931631 MS.gene031140:CDS 35.0%
ATTAATGGTTATGCACAGAC+GGG + chr6.2:8933747-8933766 None:intergenic 35.0%
CAAAAGGCAACAAAAAAGCA+AGG + chr6.2:8931713-8931732 None:intergenic 35.0%
CAAATTTCTCCATCTGTTCA+AGG + chr6.2:8933882-8933901 None:intergenic 35.0%
CTGTCATATCATGGAATCAT+AGG - chr6.2:8936016-8936035 MS.gene031140:CDS 35.0%
GAAGCTGTAGAAAGTCAAAA+TGG - chr6.2:8934315-8934334 MS.gene031140:intron 35.0%
GAATCAGGAATTACTACCAT+GGG - chr6.2:8934337-8934356 MS.gene031140:intron 35.0%
GACACGACACCAATAATAAT+TGG - chr6.2:8933454-8933473 MS.gene031140:CDS 35.0%
GAGAGACAATTAATCCCTTT+AGG + chr6.2:8933970-8933989 None:intergenic 35.0%
GATTAATGGTTATGCACAGA+CGG + chr6.2:8933748-8933767 None:intergenic 35.0%
GCTGCTGTTATTCATTACAA+TGG - chr6.2:8935903-8935922 MS.gene031140:CDS 35.0%
GGATGAGGATAGTATGAAAA+AGG + chr6.2:8931692-8931711 None:intergenic 35.0%
GTCTACTTCTAACCGTTTAT+TGG - chr6.2:8932791-8932810 MS.gene031140:intron 35.0%
TACCATGGGAATCATATGAT+GGG - chr6.2:8934351-8934370 MS.gene031140:intron 35.0%
TATCCGCATATATATTCCTG+AGG - chr6.2:8934458-8934477 MS.gene031140:CDS 35.0%
TCAAAACCAATCTCTAACCA+GGG + chr6.2:8935939-8935958 None:intergenic 35.0%
TCACGATATCAAGCAACAAT+GGG - chr6.2:8931613-8931632 MS.gene031140:CDS 35.0%
TGTTAGGAACTGTCATATCA+TGG - chr6.2:8936007-8936026 MS.gene031140:CDS 35.0%
TTAGAGAGACATATCATTCC+TGG - chr6.2:8935265-8935284 MS.gene031140:intron 35.0%
TTCAAAACCAATCTCTAACC+AGG + chr6.2:8935940-8935959 None:intergenic 35.0%
TTCTCCATATACAAGAGTCA+GGG + chr6.2:8934692-8934711 None:intergenic 35.0%
TTTCTCCATATACAAGAGTC+AGG + chr6.2:8934693-8934712 None:intergenic 35.0%
! AAAATGGTGGAAAGAGTTGT+CGG + chr6.2:8934073-8934092 None:intergenic 35.0%
! ACAATTAATCCCTTTAGGGA+CGG + chr6.2:8933965-8933984 None:intergenic 35.0%
! GAAGTGTTCATGTGTCAAAA+TGG + chr6.2:8934909-8934928 None:intergenic 35.0%
! GATTATGGAAGTTTTCTAGG+TGG - chr6.2:8931996-8932015 MS.gene031140:intron 35.0%
! GTGGAGATTTCCTTCATTTT+AGG - chr6.2:8932015-8932034 MS.gene031140:intron 35.0%
! TTCGGTTCTTGTATTGATAG+TGG - chr6.2:8933812-8933831 MS.gene031140:intron 35.0%
! TTTAGAACTGGAAAACAAGC+CGG - chr6.2:8932615-8932634 MS.gene031140:intron 35.0%
!! ATGAAAAGGAGTACCAAAAG+AGG + chr6.2:8931784-8931803 None:intergenic 35.0%
!! ATTATTATTGGTGTCGTGTC+CGG + chr6.2:8933454-8933473 None:intergenic 35.0%
!! TATGGATCACTCTTTGGAAT+TGG - chr6.2:8933390-8933409 MS.gene031140:CDS 35.0%
!! TCTGGTAGCTTTAAACTAGA+TGG + chr6.2:8933065-8933084 None:intergenic 35.0%
!!! TTTTTTGGATGACGATGTAG+TGG - chr6.2:8935020-8935039 MS.gene031140:intron 35.0%
!!! TTTTTTTGTCGGTGATGACA+TGG + chr6.2:8934182-8934201 None:intergenic 35.0%
AAAACCACCTTGTCAAGGTT+TGG + chr6.2:8935003-8935022 None:intergenic 40.0%
AAACCACCTTGTCAAGGTTT+GGG + chr6.2:8935002-8935021 None:intergenic 40.0%
AAAGGAAACTGAAGTCGCAT+AGG + chr6.2:8935651-8935670 None:intergenic 40.0%
AACATGACAATGTGGAAGCT+CGG - chr6.2:8935765-8935784 MS.gene031140:intron 40.0%
AACCGTCTACCTAAACAATC+TGG + chr6.2:8932835-8932854 None:intergenic 40.0%
ACCGACAAAAAAACTTACGC+GGG - chr6.2:8934189-8934208 MS.gene031140:intron 40.0%
ACTTCAACAATAGCAGGTGA+GGG + chr6.2:8934243-8934262 None:intergenic 40.0%
AGAGAGAGGAAACAGACTTA+TGG + chr6.2:8934526-8934545 None:intergenic 40.0%
AGGTAAAGTTAATGGAGCTG+TGG - chr6.2:8935083-8935102 MS.gene031140:intron 40.0%
AGGTTTCAGAGACGATTGTA+CGG + chr6.2:8934145-8934164 None:intergenic 40.0%
ATGTCTTTGATCTTCGTGCA+TGG - chr6.2:8935229-8935248 MS.gene031140:intron 40.0%
ATTGAATGTGACCACGTTGT+CGG - chr6.2:8933489-8933508 MS.gene031140:CDS 40.0%
CAACTCCAAACCAATGACAT+AGG + chr6.2:8932395-8932414 None:intergenic 40.0%
CACCGACAAAAAAACTTACG+CGG - chr6.2:8934188-8934207 MS.gene031140:intron 40.0%
CCAAAAAAACCACCTTGTCA+AGG + chr6.2:8935008-8935027 None:intergenic 40.0%
CCTCTAAATGCAATCAAAGC+TGG + chr6.2:8935801-8935820 None:intergenic 40.0%
CCTGCTATTGTTGAAGTCAA+AGG - chr6.2:8934246-8934265 MS.gene031140:intron 40.0%
CGCTTTCATGTTAAAGGGAA+TGG - chr6.2:8933142-8933161 MS.gene031140:CDS 40.0%
CTAAATGCAATCAAAGCTGG+AGG + chr6.2:8935798-8935817 None:intergenic 40.0%
CTACCATGGGAATCATATGA+TGG - chr6.2:8934350-8934369 MS.gene031140:intron 40.0%
CTATGGGAAATGGATCTGAA+AGG - chr6.2:8935063-8935082 MS.gene031140:intron 40.0%
CTCCAGATTGTTTAGGTAGA+CGG - chr6.2:8932830-8932849 MS.gene031140:intron 40.0%
CTGAATGCTTCTTGTGATGA+TGG - chr6.2:8932971-8932990 MS.gene031140:intron 40.0%
CTTTCTACAGCTTCAAGTAC+CGG + chr6.2:8934309-8934328 None:intergenic 40.0%
GAAATGTACCAACATGTGGT+TGG - chr6.2:8934615-8934634 MS.gene031140:intron 40.0%
GATTGTTTAGGTAGACGGTT+AGG - chr6.2:8932835-8932854 MS.gene031140:intron 40.0%
GCAACAAAAAAGCAAGGATG+AGG + chr6.2:8931707-8931726 None:intergenic 40.0%
GCAGTGAGAATGAAGACAAA+AGG + chr6.2:8931729-8931748 None:intergenic 40.0%
GGAATCAGGAATTACTACCA+TGG - chr6.2:8934336-8934355 MS.gene031140:intron 40.0%
GTATCAATGCTCCAGATTGA+AGG + chr6.2:8933533-8933552 None:intergenic 40.0%
GTCCAAATGCTTTGCAATGA+GGG + chr6.2:8935178-8935197 None:intergenic 40.0%
GTTATGCTTCCTTGAACAGA+TGG - chr6.2:8933870-8933889 MS.gene031140:intron 40.0%
TAAACTAGATGGAACTTCCC+CGG + chr6.2:8933054-8933073 None:intergenic 40.0%
TAACCGACAACAACAGAAAC+CGG + chr6.2:8932637-8932656 None:intergenic 40.0%
TACTCAACGAAGTGAAAACC+GGG - chr6.2:8933033-8933052 MS.gene031140:intron 40.0%
TCAAAACCCTGGTTAGAGAT+TGG - chr6.2:8935930-8935949 MS.gene031140:CDS 40.0%
TCCAAATGCTTTGCAATGAG+GGG + chr6.2:8935177-8935196 None:intergenic 40.0%
TGAGGTCAAACATGACAATG+TGG - chr6.2:8935757-8935776 MS.gene031140:intron 40.0%
TGATCCCTGACTCTTGTATA+TGG - chr6.2:8934685-8934704 MS.gene031140:intron 40.0%
TGATGAATCCAACTTACCTC+AGG + chr6.2:8934477-8934496 None:intergenic 40.0%
TTCAGATCCATTTCCCATAG+TGG + chr6.2:8935063-8935082 None:intergenic 40.0%
TTCATCCAATTGACCCTTCT+TGG - chr6.2:8935826-8935845 MS.gene031140:intron 40.0%
TTCCCATCATATGATTCCCA+TGG + chr6.2:8934356-8934375 None:intergenic 40.0%
TTGACGTACTTGGTCCAAAA+TGG + chr6.2:8935972-8935991 None:intergenic 40.0%
! AACACTTGTTGACACCTTCA+AGG + chr6.2:8931761-8931780 None:intergenic 40.0%
! AAGGCATTCATCAGTTTGAC+TGG - chr6.2:8934265-8934284 MS.gene031140:intron 40.0%
! ACACTTGTTGACACCTTCAA+GGG + chr6.2:8931760-8931779 None:intergenic 40.0%
! ACAGCTTGTGTTGTTGTGTA+TGG - chr6.2:8935727-8935746 MS.gene031140:intron 40.0%
! CCAGCTTTGATTGCATTTAG+AGG - chr6.2:8935798-8935817 MS.gene031140:intron 40.0%
! CCTTTGACTTCAACAATAGC+AGG + chr6.2:8934249-8934268 None:intergenic 40.0%
! GTCAACAAGTGTTCCTCTTT+TGG - chr6.2:8931768-8931787 MS.gene031140:CDS 40.0%
!! TCTCTAACCAGGGTTTTGAT+TGG + chr6.2:8935929-8935948 None:intergenic 40.0%
!! TGTGTTGATTCTTTCGTGTG+AGG - chr6.2:8932566-8932585 MS.gene031140:CDS 40.0%
!!! ACCCGCGTAAGTTTTTTTGT+CGG + chr6.2:8934193-8934212 None:intergenic 40.0%
!!! CCTTGACAAGGTGGTTTTTT+TGG - chr6.2:8935005-8935024 MS.gene031140:intron 40.0%
AAACCAAGCATGTGCCAAGA+AGG + chr6.2:8935843-8935862 None:intergenic 45.0%
AACCAAGCATGTGCCAAGAA+GGG + chr6.2:8935842-8935861 None:intergenic 45.0%
AAGAAAGACACAACCACGTG+AGG + chr6.2:8932706-8932725 None:intergenic 45.0%
AATGCTTTGCAATGAGGGGA+TGG + chr6.2:8935173-8935192 None:intergenic 45.0%
ACAATGGCCAATCAAAACCC+TGG - chr6.2:8935919-8935938 MS.gene031140:CDS 45.0%
ACTCAACGAAGTGAAAACCG+GGG - chr6.2:8933034-8933053 MS.gene031140:intron 45.0%
ACTGCTGTTGTTACCCTTGA+AGG - chr6.2:8931744-8931763 MS.gene031140:CDS 45.0%
AGGACCAAGGTTTCTTGGAA+GGG - chr6.2:8932855-8932874 MS.gene031140:intron 45.0%
AGTATTCATCCGTCAAACGC+AGG + chr6.2:8933993-8934012 None:intergenic 45.0%
ATCGTGATGCTTCTCATGCT+AGG + chr6.2:8931600-8931619 None:intergenic 45.0%
ATGCAATCAAAGCTGGAGGT+AGG + chr6.2:8935794-8935813 None:intergenic 45.0%
ATGCTTTGCAATGAGGGGAT+GGG + chr6.2:8935172-8935191 None:intergenic 45.0%
ATGTGCCAAGAAGGGTCAAT+TGG + chr6.2:8935834-8935853 None:intergenic 45.0%
CACTTAGACCAACCACATGT+TGG + chr6.2:8934626-8934645 None:intergenic 45.0%
CTTGTCTCCACTATGGGAAA+TGG - chr6.2:8935053-8935072 MS.gene031140:intron 45.0%
GACTTCAACAATAGCAGGTG+AGG + chr6.2:8934244-8934263 None:intergenic 45.0%
GCTTTACCCAAACCTTGACA+AGG - chr6.2:8934993-8935012 MS.gene031140:intron 45.0%
GGTCCAAATGCTTTGCAATG+AGG + chr6.2:8935179-8935198 None:intergenic 45.0%
GTATTCATCCGTCAAACGCA+GGG + chr6.2:8933992-8934011 None:intergenic 45.0%
GTTGTGTATGGCAGAATCTG+AGG - chr6.2:8935739-8935758 MS.gene031140:intron 45.0%
TAGGACCAAGGTTTCTTGGA+AGG - chr6.2:8932854-8932873 MS.gene031140:intron 45.0%
TATTATCGCCGTGAGTGATC+CGG + chr6.2:8932495-8932514 None:intergenic 45.0%
TCAACCCTTCCAAGAAACCT+TGG + chr6.2:8932862-8932881 None:intergenic 45.0%
TCTGAGTGTCAGTGCTACAT+AGG - chr6.2:8935614-8935633 MS.gene031140:intron 45.0%
TCTTGGCACATGCTTGGTTT+AGG - chr6.2:8935843-8935862 MS.gene031140:CDS 45.0%
TGCAATCAAAGCTGGAGGTA+GGG + chr6.2:8935793-8935812 None:intergenic 45.0%
TTACCCAAACCTTGACAAGG+TGG - chr6.2:8934996-8935015 MS.gene031140:intron 45.0%
TTTCGAAATGTTGCCTCACG+TGG - chr6.2:8932690-8932709 MS.gene031140:intron 45.0%
! AAAGAGTTGTCGGAGAGCAT+TGG + chr6.2:8934063-8934082 None:intergenic 45.0%
! AACACCTGACCACTAGCTTA+AGG + chr6.2:8934665-8934684 None:intergenic 45.0%
! AAGCCGGTTTCTGTTGTTGT+CGG - chr6.2:8932631-8932650 MS.gene031140:intron 45.0%
! TCCCCTCATTGCAAAGCATT+TGG - chr6.2:8935173-8935192 MS.gene031140:intron 45.0%
!! AGCACTGACACTCAGATTGA+AGG + chr6.2:8935610-8935629 None:intergenic 45.0%
!! CAACATGTGGTTGGTCTAAG+TGG - chr6.2:8934624-8934643 MS.gene031140:intron 45.0%
!! GACATGCTACTGACTTGTAG+AGG - chr6.2:8935501-8935520 MS.gene031140:intron 45.0%
!! GAGAGCATTGGTAGTAACTC+CGG + chr6.2:8934051-8934070 None:intergenic 45.0%
!! GTGGTTGGTCTAAGTGGTAA+GGG - chr6.2:8934630-8934649 MS.gene031140:intron 45.0%
!! TGTGGTTGGTCTAAGTGGTA+AGG - chr6.2:8934629-8934648 MS.gene031140:intron 45.0%
AATCGCCTTGTGTGCGCAAT+GGG - chr6.2:8934719-8934738 MS.gene031140:intron 50.0%
ACGCAAACAATTGCCTCCTC+CGG - chr6.2:8934029-8934048 MS.gene031140:intron 50.0%
ACTCGGACACCTTAAGCTAG+TGG - chr6.2:8934653-8934672 MS.gene031140:intron 50.0%
CAATATTGAGGCACAGACGC+CGG - chr6.2:8933432-8933451 MS.gene031140:CDS 50.0%
CAGAGACGATTGTACGGTAG+AGG + chr6.2:8934139-8934158 None:intergenic 50.0%
CAGCTAGTTCCGTCCCTAAA+GGG - chr6.2:8933953-8933972 MS.gene031140:intron 50.0%
CGATGCAAATTTACGCGGAC+TGG + chr6.2:8934394-8934413 None:intergenic 50.0%
CGGTTAGGACCAAGGTTTCT+TGG - chr6.2:8932850-8932869 MS.gene031140:intron 50.0%
CTGCAGAGGCGAAGATGAAT+GGG - chr6.2:8935110-8935129 MS.gene031140:intron 50.0%
GACACCTTAAGCTAGTGGTC+AGG - chr6.2:8934658-8934677 MS.gene031140:intron 50.0%
GGTCTAAGTGGTAAGGGACT+CGG - chr6.2:8934636-8934655 MS.gene031140:intron 50.0%
TAGGTAGACGGTTAGGACCA+AGG - chr6.2:8932842-8932861 MS.gene031140:intron 50.0%
TCAACAATAGCAGGTGAGGG+AGG + chr6.2:8934240-8934259 None:intergenic 50.0%
TGGAAGGGTTGACGATTCAG+CGG - chr6.2:8932870-8932889 MS.gene031140:intron 50.0%
TTGTCTCTCCCTGCGTTTGA+CGG - chr6.2:8933981-8934000 MS.gene031140:intron 50.0%
! AGCGTGACTTGTCTCCACTA+TGG - chr6.2:8935046-8935065 MS.gene031140:intron 50.0%
! ATTGGTAGTAACTCCGGAGG+AGG + chr6.2:8934045-8934064 None:intergenic 50.0%
! GCGTGACTTGTCTCCACTAT+GGG - chr6.2:8935047-8935066 MS.gene031140:intron 50.0%
!! AGCATTGGTAGTAACTCCGG+AGG + chr6.2:8934048-8934067 None:intergenic 50.0%
!! CACTCAGATTGAAGGCGTTC+TGG + chr6.2:8935602-8935621 None:intergenic 50.0%
!! CGGACTGGTATCACTGAGAT+TGG + chr6.2:8934379-8934398 None:intergenic 50.0%
AAGCCCAAGCACACTCGTCA+GGG + chr6.2:8935200-8935219 None:intergenic 55.0%
ACGAGTGTGCTTGGGCTTAC+GGG - chr6.2:8935202-8935221 MS.gene031140:intron 55.0%
ATCGCCTTGTGTGCGCAATG+GGG - chr6.2:8934720-8934739 MS.gene031140:intron 55.0%
CACCTGACACGCCTTCAATC+TGG - chr6.2:8933519-8933538 MS.gene031140:CDS 55.0%
CCATTCATCTTCGCCTCTGC+AGG + chr6.2:8935112-8935131 None:intergenic 55.0%
CCTGCAGAGGCGAAGATGAA+TGG - chr6.2:8935109-8935128 MS.gene031140:intron 55.0%
CTTACGCGGGTATGCACTCT+TGG - chr6.2:8934202-8934221 MS.gene031140:intron 55.0%
GAATCGCCTTGTGTGCGCAA+TGG - chr6.2:8934718-8934737 MS.gene031140:intron 55.0%
GACCCTTCTTGGCACATGCT+TGG - chr6.2:8935837-8935856 MS.gene031140:CDS 55.0%
GACGAGTGTGCTTGGGCTTA+CGG - chr6.2:8935201-8935220 MS.gene031140:intron 55.0%
GCAGCTAGTTCCGTCCCTAA+AGG - chr6.2:8933952-8933971 MS.gene031140:intron 55.0%
GGAATGCTCCGGATCACTCA+CGG - chr6.2:8932484-8932503 MS.gene031140:CDS 55.0%
TAAGCCCAAGCACACTCGTC+AGG + chr6.2:8935201-8935220 None:intergenic 55.0%
TGTGACCACGTTGTCGGTGT+CGG - chr6.2:8933495-8933514 MS.gene031140:CDS 55.0%
! CTCCAGATTGAAGGCGTGTC+AGG + chr6.2:8933524-8933543 None:intergenic 55.0%
CGAACCCCATTGCGCACACA+AGG + chr6.2:8934727-8934746 None:intergenic 60.0%
GGACCCTGACGAGTGTGCTT+GGG - chr6.2:8935194-8935213 MS.gene031140:intron 60.0%
GGAGCTGTGGAAACCTGCAG+AGG - chr6.2:8935096-8935115 MS.gene031140:intron 60.0%
TGGACCCTGACGAGTGTGCT+TGG - chr6.2:8935193-8935212 MS.gene031140:intron 60.0%
GGTGTCCGACACCGACAACG+TGG + chr6.2:8933503-8933522 None:intergenic 65.0%
GTGCGCAATGGGGTTCGCGT+CGG - chr6.2:8934730-8934749 MS.gene031140:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 8931579 8936037 8931579 ID=MS.gene031140
chr6.2 mRNA 8931579 8936037 8931579 ID=MS.gene031140.t1;Parent=MS.gene031140
chr6.2 exon 8935827 8936037 8935827 ID=MS.gene031140.t1.exon1;Parent=MS.gene031140.t1
chr6.2 CDS 8935827 8936037 8935827 ID=cds.MS.gene031140.t1;Parent=MS.gene031140.t1
chr6.2 exon 8934725 8934780 8934725 ID=MS.gene031140.t1.exon2;Parent=MS.gene031140.t1
chr6.2 CDS 8934725 8934780 8934725 ID=cds.MS.gene031140.t1;Parent=MS.gene031140.t1
chr6.2 exon 8934453 8934608 8934453 ID=MS.gene031140.t1.exon3;Parent=MS.gene031140.t1
chr6.2 CDS 8934453 8934608 8934453 ID=cds.MS.gene031140.t1;Parent=MS.gene031140.t1
chr6.2 exon 8933137 8933727 8933137 ID=MS.gene031140.t1.exon4;Parent=MS.gene031140.t1
chr6.2 CDS 8933137 8933727 8933137 ID=cds.MS.gene031140.t1;Parent=MS.gene031140.t1
chr6.2 exon 8932320 8932622 8932320 ID=MS.gene031140.t1.exon5;Parent=MS.gene031140.t1
chr6.2 CDS 8932320 8932622 8932320 ID=cds.MS.gene031140.t1;Parent=MS.gene031140.t1
chr6.2 exon 8931579 8931863 8931579 ID=MS.gene031140.t1.exon6;Parent=MS.gene031140.t1
chr6.2 CDS 8931579 8931863 8931579 ID=cds.MS.gene031140.t1;Parent=MS.gene031140.t1
Gene Sequence

>MS.gene031140

ATGCAGCTTCAGTTCTCGCCTAGCATGAGAAGCATCACGATATCAAGCAACAATGGGTTTATTGACTTGATGAAGATCAAGGTCGCAGCTTGTCACATTTCTTATAGAACCCTTTTTCATACTATCCTCATCCTTGCTTTTTTGTTGCCTTTTGTCTTCATTCTCACTGCTGTTGTTACCCTTGAAGGTGTCAACAAGTGTTCCTCTTTTGGTACTCCTTTTCATCCTCTTATGTTGTTTTGATATATATCATTTGTATTGTTTTTGTTATGATATATGTTGGTCATTTGTATTTGGATTTTTGTATTGATATGTGTTTGTTTGTTTAAGATAGATCTTGATTTGAAATTTGAATATTGGATCAAAAGTTATGTCAATGGAATTGTTTGAGGTGAATCATGAATTTGTTTCCCTTGTGATTATGGAAGTTTTCTAGGTGGAGATTTCCTTCATTTTAGGATCTTAAGTGTGATATGATGATTTAAGCATTTTATTTGAATGATTTGAATCCATGTTATTTGTAAGTTAGGATGCATACGAGTTGATATAAAACTAAATTCAATTGATATGAATTTCTAGTGTGTTTCTATTTTGGATATGAATCTCATTTTGGATCATGATTCGTTATGTTGAATCTTGATTCACTAAGATGAATCATGATTCATTCTAATGAATAACTATTTAAGTTTAGTGTAGTTAGACACTTTTTTTCTCAACATTGTATTGCTAGCTACTTTTCGTTTGTGATTTGATTTATGACTTGAATCTTGAATTATTTTGAGGTTCACATATGGCATGCCAACTAATAATTTTCCTATGTCATTGGTTTGGAGTTGAAAATGTCGTATCTATATTGGTAATGTATCTTACAATTCAGAATATAATGTCATATCTAATTCACAATTGGAATGCTCCGGATCACTCACGGCGATAATAATGATGATGATTATGTTTTCTTGCAATGTGTTGCTGAATTTTGTATCGTGTTGTGTTGATTCTTTCGTGTGAGGAATCAAATTTGAAGTGTGCTTTACAATTTAGAACTGGAAAACAAGCCGGTTTCTGTTGTTGTCGGTTATCAATATAAGTTTTGGTTTATCGATTTCTAGCATTTCGAAATGTTGCCTCACGTGGTTGTGTCTTTCTTTCGTTATGTTACTCCTATTTGGTTCTAAAAGTTAATTGTTGTGCACAATTTGTGTCTCGTCTTTTGTCTACTTCTAACCGTTTATTGGTTCCTTGTTTTTTTGTCTCCAGATTGTTTAGGTAGACGGTTAGGACCAAGGTTTCTTGGAAGGGTTGACGATTCAGCGGTAAATTCTTTTTTATATTAAAATAGATTTTTCTGAATAGATAATCATATCAACCAAAGTTTTGATTAACCAACTTTATCTGAATGCTTCTTGTGATGATGGTAATGCTAATGCAGAGATTAGTTAGAGATTTTTACAACATACTCAACGAAGTGAAAACCGGGGAAGTTCCATCTAGTTTAAAGCTACCAGATTCATTTGATCAAATGGTTTCTGATATGAAGAACAATCAATATGATGCCAAAACATTCGCTTTCATGTTAAAGGGAATGGTAAGTTGCATTTAATGTTAATATTAGTTGTCGTATTTTTCTTGATTAATTAGTATTAATTCGTGAAAGGGTTGTCTGCAATGAATTCTGTTGATGTTTTCGAATCTTATAAGTTATCTAACACATAGATTGAAATAATAACACGTTTTAGGCACTTTTTTTCTCTGAAATTTGAATATTAGATATTTTAAGATCATCATTATATCTGATAGATAACCATTACTTTTATGGATCACTCTTTGGAATTGGAGAAACAATTGCATGTATGCAATATTGAGGCACAGACGCCGGACACGACACCAATAATAATTGGAGAAATAGAATAATTGAATGTGACCACGTTGTCGGTGTCGGACACCTGACACGCCTTCAATCTGGAGCATTGATACCTCATAGAATGCTCATATCTTTTATTATTATTTTATGAGAAAATGGGACATTCATTGTTAGTGTAAACTAGTTTTATACTGTCGTCCAATAAGAATTGAGTATCTGATAGTTATCTTTAAAAAGCGGTTATAATCTAGGCTTAGATAGCAACGTGATAAACTTTTATTAGATGACGGTTAAAACTATTTTACCCGTCTGTGCATAACCATTAATCCCTTTTCATATCTAATAGTTAGTCACATTAATCATAACAGAATTTTCGGTTCTTGTATTGATAGTGGTAGCAAATGAGAATTATATTGATCTTTGTTATGATGTTATGCTTCCTTGAACAGATGGAGAAATTTGAGAACGAAATCAGAGAATCTAAATTTGCAGAGCTGATGAATAAACACTTTGCAGCTAGTTCCGTCCCTAAAGGGATTAATTGTCTCTCCCTGCGTTTGACGGATGAATACTCGTCAAATGCGCATGCACGCAAACAATTGCCTCCTCCGGAGTTACTACCAATGCTCTCCGACAACTCTTTCCACCATTTTATTTTGTCAACTGATAACATCTTGGCTGCTTCAGTCGTTGTTACCTCTACCGTACAATCGTCTCTGAAACCTGAAAATATAGTTTTCCATGTCATCACCGACAAAAAAACTTACGCGGGTATGCACTCTTGGTTTGCACTAAATCCTCCCTCACCTGCTATTGTTGAAGTCAAAGGCATTCATCAGTTTGACTGGTTAACTAGAGAAAATGTTCCGGTACTTGAAGCTGTAGAAAGTCAAAATGGAATCAGGAATTACTACCATGGGAATCATATGATGGGAACCAATCTCAGTGATACCAGTCCGCGTAAATTTGCATCGAAATTGCAGTCGAGAAGTCCAAAGTACATATCTCTACTCAATCATATCCGCATATATATTCCTGAGGTAAGTTGGATTCATCAACGTTCACTCTTTCTGTATTGCTTCTCCATAAGTCTGTTTCCTCTCTCTGAATATTGAAACTTTTCAAATCATAATATTTATGTTTTTGATAATATCTTTACTTATTTAATGAAACTTGAAATGTACCAACATGTGGTTGGTCTAAGTGGTAAGGGACTCGGACACCTTAAGCTAGTGGTCAGGTGTTTGATCCCTGACTCTTGTATATGGAGAAAACTAAGAATCGCCTTGTGTGCGCAATGGGGTTCGCGTCGGAGATTAGTCACTGATAAACAATATTGGATACTTTGTATAACATGACTATCAACATAAAATTGATATGAATGATTGATCTAAGACTGTAGAAAATGGGTTATATGAATTATGCTAAATAGCATGTAGCTCTTAAATTATGAATTTAATGTGAGCCCATTTTGACACATGAACACTTCAAACTGAAGAAAATCTTATTAATCTTATTTGTGCTGATTGTGTTTGTCTTGTTTGTGTTGAACAGCTTTACCCAAACCTTGACAAGGTGGTTTTTTTGGATGACGATGTAGTGGTTCAGCGTGACTTGTCTCCACTATGGGAAATGGATCTGAAAGGTAAAGTTAATGGAGCTGTGGAAACCTGCAGAGGCGAAGATGAATGGGTAATGTCAAAACATTTTAGGAACTACTTCAATTTTTCCCATCCCCTCATTGCAAAGCATTTGGACCCTGACGAGTGTGCTTGGGCTTACGGGATGAATGTCTTTGATCTTCGTGCATGGAGAGCAGCAAATATTAGAGAGACATATCATTCCTGGCTTAAAGAGGTATAAAATCATCTTACCCTCAATCCAATATCATTTAATCATTCAAAATTTTACGGTTTTGGTATATTAATATTTGAAATCTAGCAAGTTCTAAATTGATATTAATGCTTCTGTACCGGCATCAATGTTTTGTTGTATATTAATATATTTGGTAATTGGTGGGTAGTAATGTGCTATGTAGCACTGACATAGACATAAACATAGGACATGCTACTGACTTGTAGAGGCCGATAATAAATTTAAGAAAATGAAAGTGAGTGAATATATAACTACATGTCCCGTGTCAGTGTCGAACATTGATACCAGAACGCCTTCAATCTGAGTGTCAGTGCTACATAGGAAGTGTGAGAACCTATGCGACTTCAGTTTCCTTTGTTCTTATCCTTTTCATTGACCTTCAAATTATGTTTTTGTGAAGAAGTTATGATTGACAGCTTGTGTTGTTGTGTATGGCAGAATCTGAGGTCAAACATGACAATGTGGAAGCTCGGAACCCTACCTCCAGCTTTGATTGCATTTAGAGGTCATGTTCATCCAATTGACCCTTCTTGGCACATGCTTGGTTTAGGTTATCAGAACAAAACAAGTGTTGAAAATGTGAAAATGGCTGCTGTTATTCATTACAATGGCCAATCAAAACCCTGGTTAGAGATTGGTTTTGAACATCTTAAACCATTTTGGACCAAGTACGTCAATTATTCAAATGATTTTGTTAGGAACTGTCATATCATGGAATCATAG
Protein sequence

>MS.gene031140.t1

MQLQFSPSMRSITISSNNGFIDLMKIKVAACHISYRTLFHTILILAFLLPFVFILTAVVTLEGVNKCSSFDCLGRRLGPRFLGRVDDSARLVRDFYNILNEVKTGEVPSSLKLPDSFDQMVSDMKNNQYDAKTFAFMLKGMMEKFENEIRESKFAELMNKHFAASSVPKGINCLSLRLTDEYSSNAHARKQLPPPELLPMLSDNSFHHFILSTDNILAASVVVTSTVQSSLKPENIVFHVITDKKTYAGMHSWFALNPPSPAIVEVKGIHQFDWLTRENVPVLEAVESQNGIRNYYHGNHMMGTNLSDTSPRKFASKLQSRSPKYISLLNHIRIYIPELYPNLDKVVFLDDDVVVQRDLSPLWEMDLKGKVNGAVETCRGEDEWVMSKHFRNYFNFSHPLIAKHLDPDECAWAYGMNVFDLRAWRAANIRETYHSWLKENLRSNMTMWKLGTLPPALIAFRGHVHPIDPSWHMLGLGYQNKTSVENVKMAAVIHYNGQSKPWLEIGFEHLKPFWTKYVNYSNDFVRNCHIMES