Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031180.t1 | XP_013461937.1 | 98.5 | 844 | 9 | 1 | 1 | 840 | 1 | 844 | 0.00E+00 | 1605.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031180.t1 | Q9LDK9 | 79.6 | 842 | 169 | 3 | 1 | 840 | 1 | 841 | 0.0e+00 | 1312.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031180.t1 | A0A072V2B0 | 98.5 | 844 | 9 | 1 | 1 | 840 | 1 | 844 | 0.0e+00 | 1605.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene031180 | MS.gene83395 | PPI |
| MS.gene031180 | MS.gene82941 | PPI |
| MS.gene067998 | MS.gene031180 | PPI |
| MS.gene031180 | MS.gene056570 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031180.t1 | MTR_3g109922 | 98.460 | 844 | 9 | 1 | 1 | 840 | 1 | 844 | 0.0 | 1713 |
| MS.gene031180.t1 | MTR_4g076210 | 33.520 | 713 | 407 | 16 | 18 | 718 | 12 | 669 | 6.35e-107 | 350 |
| MS.gene031180.t1 | MTR_5g079920 | 26.415 | 212 | 142 | 2 | 42 | 253 | 46 | 243 | 4.95e-17 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031180.t1 | AT5G11490 | 80.166 | 842 | 164 | 3 | 1 | 840 | 1 | 841 | 0.0 | 1397 |
| MS.gene031180.t1 | AT5G11490 | 80.215 | 839 | 163 | 3 | 1 | 837 | 1 | 838 | 0.0 | 1391 |
| MS.gene031180.t1 | AT5G11490 | 79.847 | 784 | 156 | 2 | 56 | 837 | 1 | 784 | 0.0 | 1304 |
| MS.gene031180.t1 | AT4G23460 | 36.093 | 604 | 362 | 12 | 18 | 616 | 12 | 596 | 3.76e-108 | 353 |
| MS.gene031180.t1 | AT4G11380 | 35.285 | 615 | 372 | 11 | 18 | 627 | 12 | 605 | 9.82e-106 | 347 |
| MS.gene031180.t1 | AT4G11380 | 35.932 | 590 | 359 | 10 | 43 | 627 | 52 | 627 | 4.30e-105 | 345 |
| MS.gene031180.t1 | AT4G23460 | 34.893 | 513 | 317 | 11 | 109 | 616 | 2 | 502 | 2.83e-83 | 284 |
| MS.gene031180.t1 | AT3G55480 | 30.556 | 144 | 98 | 1 | 45 | 188 | 49 | 190 | 2.12e-13 | 75.1 |
| MS.gene031180.t1 | AT3G55480 | 23.721 | 430 | 271 | 17 | 275 | 671 | 351 | 756 | 4.42e-13 | 73.9 |
| MS.gene031180.t1 | AT3G55480 | 23.721 | 430 | 271 | 17 | 275 | 671 | 223 | 628 | 2.86e-13 | 74.3 |
Find 196 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCGGCTTCTGCAGTTTC+TGG | 0.097421 | 3.4:+94657229 | MS.gene031180:CDS |
| CAATCAGCTTTGTCCAAATT+TGG | 0.125872 | 3.4:+94661260 | MS.gene031180:CDS |
| GAGTATTTGGTTGGGCCTTT+AGG | 0.153079 | 3.4:+94653029 | MS.gene031180:CDS |
| TGTCTGCTTTACAAGAAATT+TGG | 0.157651 | 3.4:+94654762 | MS.gene031180:CDS |
| GTTTCAGGGCAAACCAAATT+TGG | 0.200113 | 3.4:-94661273 | None:intergenic |
| ATCAAATGCTTCAACGTTTC+TGG | 0.203616 | 3.4:-94653155 | None:intergenic |
| TGGAAAGTCTGGTTGAAAAT+TGG | 0.212595 | 3.4:+94657615 | MS.gene031180:CDS |
| CTGCCTTAGCCTTAGGTTCT+TGG | 0.226571 | 3.4:-94657535 | None:intergenic |
| CCAGGATCCAGTACAGCTTT+TGG | 0.231595 | 3.4:-94660591 | None:intergenic |
| TATAATGCTCCTTCCTATAA+TGG | 0.233272 | 3.4:+94660414 | MS.gene031180:CDS |
| CCTGCACTTGACTTTATCTA+TGG | 0.262839 | 3.4:+94655486 | MS.gene031180:CDS |
| AGTATTTGGTTGGGCCTTTA+GGG | 0.273406 | 3.4:+94653030 | MS.gene031180:CDS |
| TTCACAACCGCTTGCAGATT+TGG | 0.280848 | 3.4:+94660455 | MS.gene031180:CDS |
| TTGGTTGGGCCTTTAGGGTC+AGG | 0.291482 | 3.4:+94653035 | MS.gene031180:CDS |
| CTCTGAGGTGGTTGACTCTA+AGG | 0.294624 | 3.4:-94654786 | None:intergenic |
| ATTATAGGAAGGAGCATTAT+AGG | 0.298629 | 3.4:-94660412 | None:intergenic |
| CGAATTGATTCCCTTGCAAT+TGG | 0.305678 | 3.4:-94657158 | None:intergenic |
| GTTTGCTACGTGCAGCATTA+AGG | 0.317331 | 3.4:+94655312 | MS.gene031180:intron |
| CATATGATGGCTCGTTATAC+TGG | 0.328980 | 3.4:-94656876 | None:intergenic |
| CAAACCTCTGATAAGGATAT+TGG | 0.329700 | 3.4:-94660642 | None:intergenic |
| GGCGAACTTGGTGGAGTATT+TGG | 0.333179 | 3.4:+94653016 | MS.gene031180:CDS |
| CCCAGTGCTTTCTGAGTCTC+GGG | 0.337763 | 3.4:-94658717 | None:intergenic |
| ATTGATGTTTCGTCTCTCTT+TGG | 0.342308 | 3.4:+94652804 | MS.gene031180:CDS |
| TAGAAGCCTGTAATAAAATA+AGG | 0.343419 | 3.4:-94658921 | None:intergenic |
| AAAGATGATGTGAGAGATAC+TGG | 0.345708 | 3.4:+94660375 | MS.gene031180:CDS |
| AATACGGAAACTGCTTGTTT+TGG | 0.348511 | 3.4:-94658983 | None:intergenic |
| CAAGATTGTATTGCTGTTGT+AGG | 0.357677 | 3.4:+94657491 | MS.gene031180:CDS |
| TTACAGCTACGGCAGCTTGC+TGG | 0.364785 | 3.4:+94652708 | MS.gene031180:CDS |
| GGAAAGTCTGGTTGAAAATT+GGG | 0.365049 | 3.4:+94657616 | MS.gene031180:CDS |
| TGAAGGGGCAGACCCATTAT+AGG | 0.369778 | 3.4:-94660427 | None:intergenic |
| GCCTTTAGGGTCAGGGTTGA+AGG | 0.371889 | 3.4:+94653043 | MS.gene031180:CDS |
| TCCCAGTGCTTTCTGAGTCT+CGG | 0.372039 | 3.4:-94658718 | None:intergenic |
| AGAATTGCATAAGATTGTTC+CGG | 0.387819 | 3.4:-94656784 | None:intergenic |
| CAAATTTGGACAAAGCTGAT+TGG | 0.388207 | 3.4:-94661259 | None:intergenic |
| CAATTGCAAGGGAATCAATT+CGG | 0.388565 | 3.4:+94657159 | MS.gene031180:CDS |
| CAAGTCACAGATTAAAATAA+AGG | 0.389674 | 3.4:+94661196 | MS.gene031180:CDS |
| TGATCCGAGGACTGGCATTA+AGG | 0.389716 | 3.4:+94652973 | MS.gene031180:CDS |
| GCTTGCTGGGAGTCGAGCTC+CGG | 0.391372 | 3.4:+94652722 | MS.gene031180:CDS |
| CCTTCGCCGTCGCAACCGTC+CGG | 0.396107 | 3.4:+94652249 | MS.gene031180:CDS |
| TTCAGAAGGTAATAAACAAT+TGG | 0.400938 | 3.4:-94654845 | None:intergenic |
| CTGGGAGCTGCACTGGCCGC+TGG | 0.402711 | 3.4:+94658735 | MS.gene031180:CDS |
| TTCTTACATGTTCACTGATA+AGG | 0.403515 | 3.4:+94660221 | MS.gene031180:CDS |
| AACTTGGTGGAGTATTTGGT+TGG | 0.409463 | 3.4:+94653020 | MS.gene031180:CDS |
| TAGTCCGAGGAAAATATATA+TGG | 0.418519 | 3.4:-94656838 | None:intergenic |
| ATGAGAGCTGCCTTAGCCTT+AGG | 0.418866 | 3.4:-94657542 | None:intergenic |
| CTGGCACATTTCAGCAGAAA+TGG | 0.420622 | 3.4:+94660610 | MS.gene031180:CDS |
| GAAAGTAACACCTATGAGAT+AGG | 0.421261 | 3.4:+94656940 | MS.gene031180:CDS |
| TCAAAGGGATTGTAAGGATC+AGG | 0.422298 | 3.4:+94652944 | MS.gene031180:CDS |
| CGATTAGATTGCGGTGGTGC+AGG | 0.423507 | 3.4:-94652222 | None:intergenic |
| GATTGCAGGATGTTCATGAT+AGG | 0.426072 | 3.4:+94658897 | MS.gene031180:intron |
| TTGTTTATTACCTTCTGAAT+CGG | 0.426616 | 3.4:+94654849 | MS.gene031180:CDS |
| GAAAGCACTGGGAGCTGCAC+TGG | 0.427199 | 3.4:+94658728 | MS.gene031180:CDS |
| ATAATGCTCCTTCCTATAAT+GGG | 0.428702 | 3.4:+94660415 | MS.gene031180:CDS |
| GTCAGGACGGTGGCAGTAAT+CGG | 0.429251 | 3.4:+94653080 | MS.gene031180:CDS |
| CATGCTGTAGTCTATCTTCA+AGG | 0.433221 | 3.4:-94655426 | None:intergenic |
| CTATGTTACGTCTGAAGCTC+TGG | 0.434441 | 3.4:+94657265 | MS.gene031180:CDS |
| GGCAGCTCTCATATGGATGC+TGG | 0.436064 | 3.4:+94657553 | MS.gene031180:CDS |
| GTGATATCAAACATGACTAT+AGG | 0.444966 | 3.4:+94652780 | MS.gene031180:CDS |
| TGGTTGGGCCTTTAGGGTCA+GGG | 0.446084 | 3.4:+94653036 | MS.gene031180:CDS |
| CCTCAACCCAAAAGCTGTAC+TGG | 0.447071 | 3.4:+94660584 | MS.gene031180:CDS |
| AGGCTAAGGCAGCTCTCATA+TGG | 0.449590 | 3.4:+94657546 | MS.gene031180:CDS |
| GCAGTTTCTGGAGATGGAAA+AGG | 0.450968 | 3.4:+94657241 | MS.gene031180:CDS |
| CTGTCTATTAGTGCGGAATC+CGG | 0.457717 | 3.4:+94660285 | MS.gene031180:CDS |
| TCCGTATGTCTTGGAAAGTC+TGG | 0.465126 | 3.4:+94657604 | MS.gene031180:CDS |
| TACAGCTACGGCAGCTTGCT+GGG | 0.465832 | 3.4:+94652709 | MS.gene031180:CDS |
| TTCGTCTCTCTTTGGTGAGA+TGG | 0.466707 | 3.4:+94652812 | MS.gene031180:CDS |
| AGAATGCCTGTGATGAGCTT+TGG | 0.467508 | 3.4:-94661226 | None:intergenic |
| CGCAGGAACAACAGAATCTC+CGG | 0.469614 | 3.4:-94660304 | None:intergenic |
| TTCAAAGCAAACCTCTGATA+AGG | 0.470543 | 3.4:-94660649 | None:intergenic |
| AGGGAATCAATTCGGGCTGT+TGG | 0.471812 | 3.4:+94657167 | MS.gene031180:CDS |
| TCAAGTGAGCTCAGGAAGTC+CGG | 0.472287 | 3.4:+94656765 | MS.gene031180:CDS |
| CAATGCTTGGCTAGTCGTGC+TGG | 0.472618 | 3.4:-94660490 | None:intergenic |
| CTTCGCCGTCGCAACCGTCC+GGG | 0.475178 | 3.4:+94652250 | MS.gene031180:CDS |
| ACTTGGTGGAGTATTTGGTT+GGG | 0.475411 | 3.4:+94653021 | MS.gene031180:CDS |
| TTCTAAGAAAATATCCTCAA+TGG | 0.478818 | 3.4:+94657465 | MS.gene031180:CDS |
| GAATTGATTCCCTTGCAATT+GGG | 0.478912 | 3.4:-94657157 | None:intergenic |
| TAGCATAGTTTCCAACATAC+AGG | 0.481690 | 3.4:-94652881 | None:intergenic |
| CTCTTAACTCAAGTGAGCTC+AGG | 0.486123 | 3.4:+94656757 | MS.gene031180:CDS |
| GCTTCTGCAGTTTCTGGAGA+TGG | 0.486335 | 3.4:+94657235 | MS.gene031180:CDS |
| CATTAAGGAATTTAGTGAAT+GGG | 0.486684 | 3.4:+94655327 | MS.gene031180:CDS |
| AAACTATGCTAAGGTTAATC+CGG | 0.489948 | 3.4:+94652893 | MS.gene031180:CDS |
| GCTCTGAGTATCAGCAAATA+CGG | 0.491058 | 3.4:-94658999 | None:intergenic |
| TTCACTTCGAGTGGCGAACT+TGG | 0.491152 | 3.4:+94653004 | MS.gene031180:CDS |
| TCAATACAGTGCATTGCATC+CGG | 0.492293 | 3.4:+94661077 | MS.gene031180:CDS |
| CACCTCAGAGGAAGCAGCTA+GGG | 0.493233 | 3.4:+94654799 | MS.gene031180:CDS |
| CTTGCTGGGAGTCGAGCTCC+GGG | 0.495428 | 3.4:+94652723 | MS.gene031180:CDS |
| TTTGTCTGTTGTATACCAAA+AGG | 0.496811 | 3.4:+94659060 | MS.gene031180:CDS |
| TCTAAGCCACCTGCATCTCT+TGG | 0.497035 | 3.4:+94656804 | MS.gene031180:CDS |
| AATATTTCACTGTTATCTGA+TGG | 0.500382 | 3.4:-94655388 | None:intergenic |
| GAGTTACTTACCTATCTCAT+AGG | 0.500850 | 3.4:-94656950 | None:intergenic |
| GTCAATGATGCAATTGCAAG+AGG | 0.504606 | 3.4:-94661017 | None:intergenic |
| GCATTAAGGAATTTAGTGAA+TGG | 0.506177 | 3.4:+94655326 | MS.gene031180:intron |
| CCAAAAGCTGTACTGGATCC+TGG | 0.506654 | 3.4:+94660591 | MS.gene031180:CDS |
| GCAGCTCTCATATGGATGCT+GGG | 0.507243 | 3.4:+94657554 | MS.gene031180:CDS |
| AAGATTGTATTGCTGTTGTA+GGG | 0.514619 | 3.4:+94657492 | MS.gene031180:CDS |
| ACTTCGAGTGGCGAACTTGG+TGG | 0.516354 | 3.4:+94653007 | MS.gene031180:CDS |
| AATTGCAAGGGAATCAATTC+GGG | 0.518278 | 3.4:+94657160 | MS.gene031180:CDS |
| TATGGCTGATGTACATCAGC+AGG | 0.521975 | 3.4:+94655504 | MS.gene031180:CDS |
| ATCGTCAAAAGAGCAAGATC+CGG | 0.522124 | 3.4:-94652912 | None:intergenic |
| TGCAAATGGTGCTGTTGTCT+TGG | 0.522927 | 3.4:+94655447 | MS.gene031180:CDS |
| GATCATCAATTGCCAATGCT+TGG | 0.526886 | 3.4:-94660503 | None:intergenic |
| AGAACTTGAAATTAGGAGAC+TGG | 0.528548 | 3.4:-94661103 | None:intergenic |
| CCCGAGACTCAGAAAGCACT+GGG | 0.529321 | 3.4:+94658717 | MS.gene031180:CDS |
| TCCTTCAACCCTGACCCTAA+AGG | 0.529512 | 3.4:-94653044 | None:intergenic |
| GATAGACTACAGCATGCAAA+TGG | 0.530107 | 3.4:+94655433 | MS.gene031180:CDS |
| AGGATAATAATAGTTATGTC+AGG | 0.535717 | 3.4:+94653063 | MS.gene031180:CDS |
| CCCCGAGACTCAGAAAGCAC+TGG | 0.536714 | 3.4:+94658716 | MS.gene031180:CDS |
| TGTTGTTCCTGCGCAGAGAG+TGG | 0.538852 | 3.4:+94660314 | MS.gene031180:CDS |
| ATTGCAGGATGTTCATGATA+GGG | 0.541499 | 3.4:+94658898 | MS.gene031180:intron |
| AACTCCTTAATGCCAGTCCT+CGG | 0.542152 | 3.4:-94652977 | None:intergenic |
| CAACAATGTCCAAGAACCTA+AGG | 0.542710 | 3.4:+94657526 | MS.gene031180:CDS |
| CATTTCTGCTGAAATGTGCC+AGG | 0.542817 | 3.4:-94660609 | None:intergenic |
| CTCTTAGAGTCATCAGTACC+CGG | 0.546509 | 3.4:-94652741 | None:intergenic |
| CCACCTCAGAGGAAGCAGCT+AGG | 0.546816 | 3.4:+94654798 | MS.gene031180:CDS |
| GGATCCGATGATCCGAGGAC+TGG | 0.547606 | 3.4:+94652965 | MS.gene031180:CDS |
| AAAATGTGTTACCTGTATGT+TGG | 0.548280 | 3.4:+94652870 | MS.gene031180:CDS |
| AATGCCAGTCCTCGGATCAT+CGG | 0.548429 | 3.4:-94652969 | None:intergenic |
| GCGGTTGTGAAGCTGCTGAA+GGG | 0.548854 | 3.4:-94660443 | None:intergenic |
| CTGATCTAAAATTACAGCTA+CGG | 0.550000 | 3.4:+94652697 | MS.gene031180:CDS |
| CAATCCTTACCTGAGTATCC+TGG | 0.550303 | 3.4:-94653187 | None:intergenic |
| ACCAGACTTTCCAAGACATA+CGG | 0.552347 | 3.4:-94657605 | None:intergenic |
| ACAATGTCTTGTGATGGAAT+TGG | 0.555303 | 3.4:+94655351 | MS.gene031180:CDS |
| CCAGTGCTTTCTGAGTCTCG+GGG | 0.555690 | 3.4:-94658716 | None:intergenic |
| ATGTGCCGTAGGAGTGCATT+GGG | 0.556487 | 3.4:-94661044 | None:intergenic |
| CTGAAAACTCAAATGTCCCT+CGG | 0.557020 | 3.4:-94660248 | None:intergenic |
| CACGCATTACCAAGAGATGC+AGG | 0.558649 | 3.4:-94656813 | None:intergenic |
| TTTGCCTCCACTCTCTGCGC+AGG | 0.558741 | 3.4:-94660321 | None:intergenic |
| CGGGTACTGATGACTCTAAG+AGG | 0.560686 | 3.4:+94652742 | MS.gene031180:CDS |
| GAGTTTGTGTTCACTTCGAG+TGG | 0.560907 | 3.4:+94652995 | MS.gene031180:CDS |
| GCATTTGATGCTCAATGACC+AGG | 0.563623 | 3.4:+94653169 | MS.gene031180:CDS |
| CCATAGATAAAGTCAAGTGC+AGG | 0.564762 | 3.4:-94655486 | None:intergenic |
| GAAAAGATTACCGATTCAGA+AGG | 0.567189 | 3.4:-94654859 | None:intergenic |
| TTGGCAATTGATGATCTGCT+TGG | 0.567360 | 3.4:+94660510 | MS.gene031180:CDS |
| AGCTCACTTGAGTTAAGAGA+GGG | 0.567475 | 3.4:-94656753 | None:intergenic |
| TGTCCAAGAACCTAAGGCTA+AGG | 0.572102 | 3.4:+94657532 | MS.gene031180:CDS |
| GCTCAATGACCAGGATACTC+AGG | 0.572468 | 3.4:+94653178 | MS.gene031180:CDS |
| CGGTTGTGAAGCTGCTGAAG+GGG | 0.573044 | 3.4:-94660442 | None:intergenic |
| CATGTGCCGTAGGAGTGCAT+TGG | 0.574006 | 3.4:-94661045 | None:intergenic |
| AGCGGTTGTGAAGCTGCTGA+AGG | 0.575249 | 3.4:-94660444 | None:intergenic |
| GCATGATGCTCCGTATGTCT+TGG | 0.576281 | 3.4:+94657595 | MS.gene031180:CDS |
| TTTGGGTTGAGGGTCAACGG+GGG | 0.576858 | 3.4:-94660573 | None:intergenic |
| CTCCCTAGCTGCTTCCTCTG+AGG | 0.578498 | 3.4:-94654801 | None:intergenic |
| TTATCAGTGAACATGTAAGA+AGG | 0.579603 | 3.4:-94660219 | None:intergenic |
| CAGCTCTCATATGGATGCTG+GGG | 0.579778 | 3.4:+94657555 | MS.gene031180:CDS |
| GTTATCTGATGGAATGTACT+TGG | 0.582108 | 3.4:-94655377 | None:intergenic |
| ATGTTGACATCCCAATTGCA+AGG | 0.584452 | 3.4:+94657147 | MS.gene031180:CDS |
| CCTAGCTGCTTCCTCTGAGG+TGG | 0.585891 | 3.4:-94654798 | None:intergenic |
| ATGTCAATGCTATTGTTGAT+CGG | 0.587080 | 3.4:+94657213 | MS.gene031180:CDS |
| TGATGACCAAAGCTCATCAC+AGG | 0.588639 | 3.4:+94661220 | MS.gene031180:CDS |
| GTATGTTGGAAACTATGCTA+AGG | 0.594327 | 3.4:+94652884 | MS.gene031180:CDS |
| ACGGACCCGGACGGTTGCGA+CGG | 0.594447 | 3.4:-94652255 | None:intergenic |
| TAAGAGGGATCTTTACAAGA+AGG | 0.601150 | 3.4:+94652758 | MS.gene031180:CDS |
| ATGTCTTGTGATGGAATTGG+TGG | 0.601765 | 3.4:+94655354 | MS.gene031180:CDS |
| CAGCACGACTAGCCAAGCAT+TGG | 0.603702 | 3.4:+94660491 | MS.gene031180:CDS |
| CCGGACGGTTGCGACGGCGA+AGG | 0.610990 | 3.4:-94652249 | None:intergenic |
| GAAATTAGGAGACTGGCCGC+CGG | 0.615981 | 3.4:-94661096 | None:intergenic |
| ATGGGCACAATGTCTTGTGA+TGG | 0.620096 | 3.4:+94655345 | MS.gene031180:CDS |
| ACTACCAATATCCTTATCAG+AGG | 0.623846 | 3.4:+94660638 | MS.gene031180:CDS |
| CAGTGCTTTCTGAGTCTCGG+GGG | 0.624458 | 3.4:-94658715 | None:intergenic |
| AATGACTTTGCATGTGCCGT+AGG | 0.625693 | 3.4:-94661055 | None:intergenic |
| TGTTGACATCCCAATTGCAA+GGG | 0.626270 | 3.4:+94657148 | MS.gene031180:CDS |
| CGACTCCCAATGCACTCCTA+CGG | 0.627621 | 3.4:+94661039 | MS.gene031180:CDS |
| GTGAGAGATACTGGAAGCAA+TGG | 0.629878 | 3.4:+94660384 | MS.gene031180:CDS |
| GAGCTCACTTGAGTTAAGAG+AGG | 0.630893 | 3.4:-94656754 | None:intergenic |
| GAAAATGCCAAATCTGCAAG+CGG | 0.631748 | 3.4:-94660462 | None:intergenic |
| GCTTCTACAACACAATGTAT+CGG | 0.632864 | 3.4:+94658937 | MS.gene031180:CDS |
| GGGTACTGATGACTCTAAGA+GGG | 0.633805 | 3.4:+94652743 | MS.gene031180:CDS |
| GAGAGTGGAGGCAAATGACA+AGG | 0.634383 | 3.4:+94660329 | MS.gene031180:CDS |
| ATCTGCATCAATACACGTGG+AGG | 0.639042 | 3.4:-94653129 | None:intergenic |
| GGGGCAGACCCATTATAGGA+AGG | 0.639597 | 3.4:-94660423 | None:intergenic |
| ATACAATCTTGACTCCATTG+AGG | 0.643764 | 3.4:-94657479 | None:intergenic |
| ATAGAAGTGTTTGTAGTCCG+AGG | 0.645673 | 3.4:-94656851 | None:intergenic |
| TGTTCCTGCGCAGAGAGTGG+AGG | 0.648267 | 3.4:+94660317 | MS.gene031180:CDS |
| GATCAGGATCCGATGATCCG+AGG | 0.649993 | 3.4:+94652960 | MS.gene031180:CDS |
| TCAATGATGCAATTGCAAGA+GGG | 0.655935 | 3.4:-94661016 | None:intergenic |
| GGAGATCGATTAGATTGCGG+TGG | 0.656896 | 3.4:-94652228 | None:intergenic |
| AGTGAGGGAACGGACCCGGA+CGG | 0.658380 | 3.4:-94652264 | None:intergenic |
| GTGAAAATCAGCAAGACCAG+CGG | 0.660650 | 3.4:-94658751 | None:intergenic |
| TAATAATAGTTATGTCAGGA+CGG | 0.660766 | 3.4:+94653067 | MS.gene031180:CDS |
| TGTATCGGTGGCTGAGAGTG+TGG | 0.662667 | 3.4:+94658952 | MS.gene031180:CDS |
| TGGCAATCTGTCTATTAGTG+CGG | 0.662854 | 3.4:+94660278 | MS.gene031180:CDS |
| TCTACAACACAATGTATCGG+TGG | 0.672727 | 3.4:+94658940 | MS.gene031180:CDS |
| AGTGCTTTCTGAGTCTCGGG+GGG | 0.673467 | 3.4:-94658714 | None:intergenic |
| TCTGGTTGAAAATTGGGACG+AGG | 0.674693 | 3.4:+94657622 | MS.gene031180:CDS |
| ATACAGTGCATTGCATCCGG+CGG | 0.681832 | 3.4:+94661080 | MS.gene031180:CDS |
| AAAATCTGCATCAATACACG+TGG | 0.682353 | 3.4:-94653132 | None:intergenic |
| GGACGAGGAGCATTCTGCCG+AGG | 0.683462 | 3.4:+94657637 | MS.gene031180:CDS |
| CTTAGAGTCAACCACCTCAG+AGG | 0.685984 | 3.4:+94654787 | MS.gene031180:CDS |
| GAAGGAGATCGATTAGATTG+CGG | 0.687354 | 3.4:-94652231 | None:intergenic |
| AGCTCTCATATGGATGCTGG+GGG | 0.703952 | 3.4:+94657556 | MS.gene031180:CDS |
| GGATCTGCTTCTAAGTACCA+CGG | 0.710539 | 3.4:+94660350 | MS.gene031180:CDS |
| TAATAGTTATGTCAGGACGG+TGG | 0.728993 | 3.4:+94653070 | MS.gene031180:CDS |
| GCATTACCAAGAGATGCAGG+TGG | 0.740701 | 3.4:-94656810 | None:intergenic |
| TCACTGATAAGGAACACCGA+GGG | 0.741366 | 3.4:+94660232 | MS.gene031180:CDS |
| GCTCACTTGAGTTAAGAGAG+GGG | 0.755910 | 3.4:-94656752 | None:intergenic |
| TTCACTGATAAGGAACACCG+AGG | 0.759479 | 3.4:+94660231 | MS.gene031180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 94652216 | 94661292 | 94652216 | ID=MS.gene031180 |
| chr3.4 | mRNA | 94652216 | 94661292 | 94652216 | ID=MS.gene031180.t1;Parent=MS.gene031180 |
| chr3.4 | exon | 94652216 | 94652271 | 94652216 | ID=MS.gene031180.t1.exon1;Parent=MS.gene031180.t1 |
| chr3.4 | CDS | 94652216 | 94652271 | 94652216 | ID=cds.MS.gene031180.t1;Parent=MS.gene031180.t1 |
| chr3.4 | exon | 94652683 | 94653199 | 94652683 | ID=MS.gene031180.t1.exon2;Parent=MS.gene031180.t1 |
| chr3.4 | CDS | 94652683 | 94653199 | 94652683 | ID=cds.MS.gene031180.t1;Parent=MS.gene031180.t1 |
| chr3.4 | exon | 94654746 | 94654870 | 94654746 | ID=MS.gene031180.t1.exon3;Parent=MS.gene031180.t1 |
| chr3.4 | CDS | 94654746 | 94654870 | 94654746 | ID=cds.MS.gene031180.t1;Parent=MS.gene031180.t1 |
| chr3.4 | exon | 94655327 | 94655525 | 94655327 | ID=MS.gene031180.t1.exon4;Parent=MS.gene031180.t1 |
| chr3.4 | CDS | 94655327 | 94655525 | 94655327 | ID=cds.MS.gene031180.t1;Parent=MS.gene031180.t1 |
| chr3.4 | exon | 94656733 | 94656961 | 94656733 | ID=MS.gene031180.t1.exon5;Parent=MS.gene031180.t1 |
| chr3.4 | CDS | 94656733 | 94656961 | 94656733 | ID=cds.MS.gene031180.t1;Parent=MS.gene031180.t1 |
| chr3.4 | exon | 94657120 | 94657286 | 94657120 | ID=MS.gene031180.t1.exon6;Parent=MS.gene031180.t1 |
| chr3.4 | CDS | 94657120 | 94657286 | 94657120 | ID=cds.MS.gene031180.t1;Parent=MS.gene031180.t1 |
| chr3.4 | exon | 94657449 | 94657658 | 94657449 | ID=MS.gene031180.t1.exon7;Parent=MS.gene031180.t1 |
| chr3.4 | CDS | 94657449 | 94657658 | 94657449 | ID=cds.MS.gene031180.t1;Parent=MS.gene031180.t1 |
| chr3.4 | exon | 94658666 | 94658776 | 94658666 | ID=MS.gene031180.t1.exon8;Parent=MS.gene031180.t1 |
| chr3.4 | CDS | 94658666 | 94658776 | 94658666 | ID=cds.MS.gene031180.t1;Parent=MS.gene031180.t1 |
| chr3.4 | exon | 94658905 | 94659081 | 94658905 | ID=MS.gene031180.t1.exon9;Parent=MS.gene031180.t1 |
| chr3.4 | CDS | 94658905 | 94659081 | 94658905 | ID=cds.MS.gene031180.t1;Parent=MS.gene031180.t1 |
| chr3.4 | exon | 94660219 | 94660659 | 94660219 | ID=MS.gene031180.t1.exon10;Parent=MS.gene031180.t1 |
| chr3.4 | CDS | 94660219 | 94660659 | 94660219 | ID=cds.MS.gene031180.t1;Parent=MS.gene031180.t1 |
| chr3.4 | exon | 94661002 | 94661292 | 94661002 | ID=MS.gene031180.t1.exon11;Parent=MS.gene031180.t1 |
| chr3.4 | CDS | 94661002 | 94661292 | 94661002 | ID=cds.MS.gene031180.t1;Parent=MS.gene031180.t1 |
| Gene Sequence |
| Protein sequence |
