Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056570.t1 | XP_003629017.2 | 98.1 | 979 | 18 | 1 | 1 | 979 | 1 | 978 | 0.00E+00 | 1835.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056570.t1 | Q8L7A9 | 70.6 | 981 | 243 | 11 | 1 | 979 | 1 | 938 | 0.0e+00 | 1276.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056570.t1 | G7L7U1 | 98.1 | 979 | 18 | 1 | 1 | 979 | 1 | 978 | 0.0e+00 | 1835.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056570 | MS.gene056700 | 0.803351 | 3.63E-49 | -1.69E-46 |
| MS.gene056570 | MS.gene072583 | 0.83874 | 2.40E-57 | -1.69E-46 |
| MS.gene056570 | MS.gene37920 | 0.811774 | 5.92E-51 | -1.69E-46 |
| MS.gene056570 | MS.gene59960 | 0.839994 | 1.14E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014683 | MS.gene056570 | PPI |
| MS.gene031180 | MS.gene056570 | PPI |
| MS.gene056570 | MS.gene32794 | PPI |
| MS.gene40593 | MS.gene056570 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056570.t1 | MTR_8g072250 | 98.059 | 979 | 18 | 1 | 1 | 979 | 1 | 978 | 0.0 | 1966 |
| MS.gene056570.t1 | MTR_5g034780 | 25.340 | 588 | 413 | 9 | 19 | 594 | 4 | 577 | 3.08e-59 | 219 |
| MS.gene056570.t1 | MTR_8g063690 | 24.497 | 596 | 408 | 9 | 19 | 594 | 4 | 577 | 3.55e-53 | 201 |
| MS.gene056570.t1 | MTR_2g084610 | 24.191 | 587 | 404 | 15 | 28 | 592 | 12 | 579 | 2.14e-52 | 199 |
| MS.gene056570.t1 | MTR_8g104380 | 26.371 | 383 | 257 | 7 | 27 | 407 | 20 | 379 | 1.02e-22 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056570.t1 | AT1G31730 | 70.133 | 981 | 248 | 13 | 1 | 979 | 1 | 938 | 0.0 | 1346 |
| MS.gene056570.t1 | AT1G60070 | 26.936 | 594 | 394 | 9 | 19 | 593 | 4 | 576 | 6.41e-64 | 233 |
| MS.gene056570.t1 | AT1G60070 | 26.936 | 594 | 394 | 9 | 19 | 593 | 4 | 576 | 1.88e-63 | 232 |
| MS.gene056570.t1 | AT1G23900 | 24.535 | 591 | 412 | 8 | 19 | 593 | 4 | 576 | 1.77e-55 | 208 |
| MS.gene056570.t1 | AT1G23900 | 24.535 | 591 | 412 | 8 | 19 | 593 | 4 | 576 | 1.77e-55 | 208 |
| MS.gene056570.t1 | AT1G23900 | 24.570 | 582 | 405 | 8 | 28 | 593 | 1 | 564 | 2.94e-54 | 204 |
| MS.gene056570.t1 | AT5G22770 | 26.522 | 460 | 315 | 10 | 65 | 511 | 48 | 497 | 6.10e-52 | 198 |
| MS.gene056570.t1 | AT5G22770 | 26.522 | 460 | 315 | 10 | 65 | 511 | 48 | 497 | 6.10e-52 | 198 |
| MS.gene056570.t1 | AT5G22770 | 26.522 | 460 | 315 | 10 | 65 | 511 | 48 | 497 | 6.10e-52 | 198 |
| MS.gene056570.t1 | AT5G22770 | 26.522 | 460 | 315 | 10 | 65 | 511 | 48 | 497 | 6.10e-52 | 198 |
| MS.gene056570.t1 | AT5G22770 | 26.522 | 460 | 315 | 10 | 65 | 511 | 48 | 497 | 6.10e-52 | 198 |
| MS.gene056570.t1 | AT5G22770 | 26.522 | 460 | 315 | 10 | 65 | 511 | 48 | 497 | 6.10e-52 | 198 |
| MS.gene056570.t1 | AT5G22780 | 25.321 | 545 | 367 | 14 | 65 | 588 | 48 | 573 | 1.10e-51 | 197 |
| MS.gene056570.t1 | AT5G22780 | 25.321 | 545 | 367 | 14 | 65 | 588 | 48 | 573 | 1.10e-51 | 197 |
| MS.gene056570.t1 | AT1G48760 | 25.257 | 487 | 310 | 13 | 41 | 510 | 31 | 480 | 2.73e-25 | 113 |
| MS.gene056570.t1 | AT1G48760 | 25.257 | 487 | 310 | 13 | 41 | 510 | 31 | 480 | 2.73e-25 | 113 |
| MS.gene056570.t1 | AT1G48760 | 25.257 | 487 | 310 | 13 | 41 | 510 | 31 | 480 | 2.73e-25 | 113 |
| MS.gene056570.t1 | AT1G23935 | 24.422 | 303 | 213 | 5 | 7 | 305 | 853 | 1143 | 2.12e-13 | 75.5 |
| MS.gene056570.t1 | AT1G23935 | 24.422 | 303 | 213 | 5 | 7 | 305 | 903 | 1193 | 2.36e-13 | 75.1 |
| MS.gene056570.t1 | AT1G23935 | 24.422 | 303 | 213 | 5 | 7 | 305 | 852 | 1142 | 2.36e-13 | 75.1 |
Find 232 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCCATTCACTGGATTT+TGG | 0.134245 | 8.2:-31855103 | None:intergenic |
| TACAAATGCACCTGATATTA+TGG | 0.160773 | 8.2:+31855517 | MS.gene056570:CDS |
| GCTCTCCCCGGATGCTTTAA+TGG | 0.165573 | 8.2:-31855345 | None:intergenic |
| TATGAATTACAAGCTGTTAT+TGG | 0.204151 | 8.2:+31853414 | MS.gene056570:CDS |
| ACTCTTTCATCTTGCGTTTA+GGG | 0.211092 | 8.2:-31844807 | None:intergenic |
| AGGTTATTTGTTGGGTTCTT+GGG | 0.216014 | 8.2:+31849128 | MS.gene056570:intron |
| CCGTTATTGGCGATATAATT+AGG | 0.223296 | 8.2:+31846675 | MS.gene056570:CDS |
| CAGGTTATTTGTTGGGTTCT+TGG | 0.225264 | 8.2:+31849127 | MS.gene056570:intron |
| GAACACATGTACACCGTTAT+TGG | 0.232178 | 8.2:+31846662 | MS.gene056570:CDS |
| GTCCAGATTCTTGCTGATCT+TGG | 0.234688 | 8.2:-31854818 | None:intergenic |
| TGTTGGGTTCTTGGGGAATA+TGG | 0.245639 | 8.2:+31849136 | MS.gene056570:CDS |
| CAAACTGCAGTGTCAATCTT+TGG | 0.260684 | 8.2:+31853344 | MS.gene056570:intron |
| CAACTTGGGATTGGGATATA+TGG | 0.275024 | 8.2:-31846762 | None:intergenic |
| TGCTAATGCTAAAGATTCTT+TGG | 0.275970 | 8.2:+31855694 | MS.gene056570:CDS |
| ATCTTGCGTTTAGGGATATC+TGG | 0.282134 | 8.2:-31844799 | None:intergenic |
| CTCGGTCACGACGCTTCTTT+CGG | 0.282371 | 8.2:+31844859 | MS.gene056570:CDS |
| TACTCTTTCATCTTGCGTTT+AGG | 0.297021 | 8.2:-31844808 | None:intergenic |
| CGATGATCCGAGTCCGTATA+AGG | 0.306731 | 8.2:+31845293 | MS.gene056570:CDS |
| TGCCGTCATTGACTGCTTAG+AGG | 0.309383 | 8.2:+31847030 | MS.gene056570:CDS |
| CTCTCCCCGGATGCTTTAAT+GGG | 0.313257 | 8.2:-31855344 | None:intergenic |
| GATTCGGTCTTCTTCGGCTT+TGG | 0.319752 | 8.2:-31844734 | None:intergenic |
| AAGCTTGCCGCTTCATTGTT+TGG | 0.324600 | 8.2:+31855218 | MS.gene056570:CDS |
| GAGTCATATTTGCGCATTAT+TGG | 0.327916 | 8.2:+31848979 | MS.gene056570:CDS |
| CACTGGGAAGTTATGCGATA+TGG | 0.347901 | 8.2:+31849192 | MS.gene056570:CDS |
| CTAGTTGATGTTCTTCTCTC+AGG | 0.348573 | 8.2:-31855254 | None:intergenic |
| CGGTTGATTGCAGAAGGATT+TGG | 0.350957 | 8.2:+31848813 | MS.gene056570:CDS |
| CTGATTACAGGTTATTTGTT+GGG | 0.351601 | 8.2:+31849120 | MS.gene056570:intron |
| CGCAGCAGCTTCTAACAACT+TGG | 0.351640 | 8.2:-31846777 | None:intergenic |
| GCAGCACCAACATTAGCTTT+TGG | 0.353994 | 8.2:-31855287 | None:intergenic |
| TCCACAAGATTTGCTTGACT+TGG | 0.356959 | 8.2:+31855385 | MS.gene056570:CDS |
| AGCCAAGATCAGCAAGAATC+TGG | 0.360813 | 8.2:+31854816 | MS.gene056570:CDS |
| TGTGGAGGAGATTGTTGATT+GGG | 0.370225 | 8.2:-31855368 | None:intergenic |
| TGATAATGATCCTGGTGTTA+TGG | 0.371274 | 8.2:+31845236 | MS.gene056570:CDS |
| TTTGATGGCACAGGAGCCTT+TGG | 0.375463 | 8.2:-31854873 | None:intergenic |
| TGGAGATCTTGTGAATATTA+AGG | 0.376401 | 8.2:+31848773 | MS.gene056570:CDS |
| GGTTAGGAAGAAAGCGGTTA+TGG | 0.386716 | 8.2:+31845140 | MS.gene056570:CDS |
| TACCTCAATGTCTTCGCAAC+TGG | 0.388904 | 8.2:-31853478 | None:intergenic |
| GCTTCCATCAGTGTTTCTTC+AGG | 0.389310 | 8.2:+31849011 | MS.gene056570:CDS |
| GCTGATTACAGGTTATTTGT+TGG | 0.389807 | 8.2:+31849119 | MS.gene056570:intron |
| ATTCACCGATTGATTTGATT+AGG | 0.392413 | 8.2:-31844705 | None:intergenic |
| TGGTGATAATCATAGCTCTT+AGG | 0.393881 | 8.2:-31845369 | None:intergenic |
| CTGAAAATTCTTGCATTGTT+GGG | 0.395186 | 8.2:+31846617 | MS.gene056570:CDS |
| CACTTCCACATTGGAAGACT+TGG | 0.396065 | 8.2:-31848507 | None:intergenic |
| GCATAACTTCCCAGTGATAT+AGG | 0.398047 | 8.2:-31849185 | None:intergenic |
| TCATCAGATACAGGATCATC+AGG | 0.400967 | 8.2:+31854993 | MS.gene056570:CDS |
| ACCTTTGTCATGCCATTCAC+TGG | 0.403390 | 8.2:-31855110 | None:intergenic |
| ATTACAAGCTGTTATTGGTT+TGG | 0.405372 | 8.2:+31853419 | MS.gene056570:CDS |
| AGAAACACTGATGGAAGCTT+TGG | 0.407807 | 8.2:-31849006 | None:intergenic |
| TTCTAATGACGAAATTGTTA+AGG | 0.407817 | 8.2:+31849225 | MS.gene056570:CDS |
| GATATTATGGGACTCTATAG+TGG | 0.407931 | 8.2:+31855530 | MS.gene056570:CDS |
| CATGAATGGGTCCACGGTGG+GGG | 0.409859 | 8.2:-31855432 | None:intergenic |
| CTAACAACAAGATCCTTATA+CGG | 0.410448 | 8.2:-31845306 | None:intergenic |
| GAACGAAAGGAGCCGGCATC+TGG | 0.411704 | 8.2:-31845389 | None:intergenic |
| GCTTCTAACAACTTGGGATT+GGG | 0.412784 | 8.2:-31846770 | None:intergenic |
| GATTACGATTCGGTCTTCTT+CGG | 0.413721 | 8.2:-31844740 | None:intergenic |
| GGGCTTAAGCTAAGGCTTGA+TGG | 0.413978 | 8.2:+31855014 | MS.gene056570:CDS |
| CTGTTATTGGTTTGGATGCA+CGG | 0.417412 | 8.2:+31853427 | MS.gene056570:CDS |
| GATAATGATCCTGGTGTTAT+GGG | 0.418077 | 8.2:+31845237 | MS.gene056570:CDS |
| GCTGAAAATTCTTGCATTGT+TGG | 0.418206 | 8.2:+31846616 | MS.gene056570:CDS |
| GTCGTGGATGATAGTGAAAC+TGG | 0.422782 | 8.2:-31854903 | None:intergenic |
| AGCTTCTAACAACTTGGGAT+TGG | 0.425340 | 8.2:-31846771 | None:intergenic |
| GAGTAATCATTGGTTTATAC+AGG | 0.425577 | 8.2:+31848631 | MS.gene056570:CDS |
| CTATAGAGTCCCATAATATC+AGG | 0.426017 | 8.2:-31855527 | None:intergenic |
| CAGATGGGTGTGACCCCAAC+TGG | 0.430929 | 8.2:+31855737 | MS.gene056570:CDS |
| ATGGGATCACAAGGCGCGTT+CGG | 0.435386 | 8.2:+31844661 | MS.gene056570:CDS |
| GCAGCTGTCAGAGGCACAAC+GGG | 0.436109 | 8.2:+31855632 | MS.gene056570:CDS |
| AGTTGGGATTCTGTCCAGTT+GGG | 0.436391 | 8.2:-31855751 | None:intergenic |
| GATGCCGGCTCCTTTCGTTC+AGG | 0.441178 | 8.2:+31845392 | MS.gene056570:CDS |
| CACACATCGAGAAGCTATAT+AGG | 0.442550 | 8.2:-31848585 | None:intergenic |
| GCGTTTAGGGATATCTGGTT+CGG | 0.444283 | 8.2:-31844794 | None:intergenic |
| AATTTGCACCGAGTAATCAT+TGG | 0.445556 | 8.2:+31848621 | MS.gene056570:CDS |
| TCATAGCTTTCATCGGAAAT+CGG | 0.448565 | 8.2:+31845167 | MS.gene056570:CDS |
| GACCCATTCATGCAACTAGA+AGG | 0.451396 | 8.2:+31855443 | MS.gene056570:CDS |
| TTCGTTGATTAATCTACAAA+CGG | 0.451855 | 8.2:-31845058 | None:intergenic |
| GTTGTGCCCATTAAAGCATC+CGG | 0.454743 | 8.2:+31855338 | MS.gene056570:CDS |
| ACAAATGCACCTGATATTAT+GGG | 0.455505 | 8.2:+31855518 | MS.gene056570:CDS |
| TTTCGCTTCAAAGTATCGTC+AGG | 0.463858 | 8.2:-31848458 | None:intergenic |
| GCGCTCGTTCTCTGATATGT+AGG | 0.465295 | 8.2:-31854763 | None:intergenic |
| GGGGAATATGGCACAGCTGA+TGG | 0.467637 | 8.2:+31849148 | MS.gene056570:CDS |
| AATCGTTAATACGATTCAAA+AGG | 0.468077 | 8.2:+31844990 | MS.gene056570:CDS |
| CCACAAGATTTGCTTGACTT+GGG | 0.468481 | 8.2:+31855386 | MS.gene056570:CDS |
| CCCCACTTTCTATAGCCTGC+TGG | 0.471779 | 8.2:-31854734 | None:intergenic |
| TATGCGTTTGAAATAGCAGC+TGG | 0.472441 | 8.2:+31851851 | MS.gene056570:CDS |
| CGATTTCGCGGATTACGATT+CGG | 0.472640 | 8.2:-31844750 | None:intergenic |
| ACAGCATGGTCTGAGATTTG+AGG | 0.473050 | 8.2:+31854839 | MS.gene056570:CDS |
| AGTCCTTCTAGTTGCATGAA+TGG | 0.473320 | 8.2:-31855446 | None:intergenic |
| TGCATGAATGGGTCCACGGT+GGG | 0.476459 | 8.2:-31855434 | None:intergenic |
| ATATCAGAGAACGAGCGCTC+TGG | 0.477437 | 8.2:+31854768 | MS.gene056570:CDS |
| AGCAAGTCTCTGAACAAGTT+GGG | 0.478029 | 8.2:-31855767 | None:intergenic |
| GTCCTTCTAGTTGCATGAAT+GGG | 0.486983 | 8.2:-31855445 | None:intergenic |
| CCTAATTATATCGCCAATAA+CGG | 0.489566 | 8.2:-31846675 | None:intergenic |
| AAGAGTAACAGCGAGATAAC+CGG | 0.491711 | 8.2:-31844935 | None:intergenic |
| GCATGAATGGGTCCACGGTG+GGG | 0.492744 | 8.2:-31855433 | None:intergenic |
| GGTGATTCATCAAGTAACAT+AGG | 0.492869 | 8.2:+31846701 | MS.gene056570:CDS |
| CATTCCGCTTCCTATATCAC+TGG | 0.494068 | 8.2:+31849175 | MS.gene056570:CDS |
| GGTTATTTGTTGGGTTCTTG+GGG | 0.494517 | 8.2:+31849129 | MS.gene056570:intron |
| ATTCTTGCATTGTTGGGAAG+TGG | 0.495732 | 8.2:+31846623 | MS.gene056570:CDS |
| TGCTAAAGATTCTTTGGAGA+AGG | 0.496576 | 8.2:+31855700 | MS.gene056570:CDS |
| ATATTATGGGACTCTATAGT+GGG | 0.499149 | 8.2:+31855531 | MS.gene056570:CDS |
| CTCGACCTAATCAAATCAAT+CGG | 0.500422 | 8.2:+31844700 | MS.gene056570:CDS |
| CTTGCCGCTTCATTGTTTGG+CGG | 0.500585 | 8.2:+31855221 | MS.gene056570:CDS |
| GTTGTTGAGCTTCTTTCGCA+TGG | 0.504811 | 8.2:+31845108 | MS.gene056570:CDS |
| ATAATCCCACTGACGTGATC+TGG | 0.505989 | 8.2:-31854971 | None:intergenic |
| CCTCAATGATTATATCCAGC+AGG | 0.506143 | 8.2:+31854719 | MS.gene056570:CDS |
| CCCTTCACAGATTGTGATAC+GGG | 0.506698 | 8.2:-31855671 | None:intergenic |
| CTTACTGTAGAACTAATGCT+TGG | 0.508595 | 8.2:-31855476 | None:intergenic |
| GTGGGATTATCATCAGATAC+AGG | 0.511328 | 8.2:+31854984 | MS.gene056570:CDS |
| CGCATGGGAAAGAAGCGGTT+AGG | 0.511994 | 8.2:+31845124 | MS.gene056570:CDS |
| TAGTCATAATCTGAAATACA+TGG | 0.515074 | 8.2:+31846946 | MS.gene056570:CDS |
| CTCAACAACTAACGGCAAAA+CGG | 0.515966 | 8.2:-31845094 | None:intergenic |
| TGGAGAAGGATGCAAAAGTC+AGG | 0.518290 | 8.2:+31855714 | MS.gene056570:CDS |
| ATGGAGCAACTGAAAACAAT+CGG | 0.518330 | 8.2:+31844625 | MS.gene056570:CDS |
| AGTGAACAGAGTGGCGGCGG+CGG | 0.518833 | 8.2:+31855563 | MS.gene056570:CDS |
| AATCGGCCGCGAACTCGCCA+TGG | 0.522408 | 8.2:+31844642 | MS.gene056570:CDS |
| TTAAACAGGTAGCTGAACAT+AGG | 0.522822 | 8.2:+31845343 | MS.gene056570:CDS |
| GTGATCCCATGGCGAGTTCG+CGG | 0.523154 | 8.2:-31844648 | None:intergenic |
| ATCCAGCAGGCTATAGAAAG+TGG | 0.527579 | 8.2:+31854732 | MS.gene056570:CDS |
| GAATTTGAGGATGATGATGC+TGG | 0.528495 | 8.2:-31855074 | None:intergenic |
| AAGCAAGTCTCTGAACAAGT+TGG | 0.532860 | 8.2:-31855768 | None:intergenic |
| TTGTTGATTGGGGCTCTCCC+CGG | 0.535513 | 8.2:-31855357 | None:intergenic |
| TTGTGGAGGAGATTGTTGAT+TGG | 0.537074 | 8.2:-31855369 | None:intergenic |
| ACTGCCCAAAATCCAGTGAA+TGG | 0.538629 | 8.2:+31855098 | MS.gene056570:CDS |
| TATTGGCGATATAATTAGGA+AGG | 0.540723 | 8.2:+31846679 | MS.gene056570:CDS |
| TGGCGCTTCATAGCTTTCAT+CGG | 0.541505 | 8.2:+31845160 | MS.gene056570:CDS |
| CGCTCGTTCTCTGATATGTA+GGG | 0.543766 | 8.2:-31854762 | None:intergenic |
| GTGATTCATCAAGTAACATA+GGG | 0.544692 | 8.2:+31846702 | MS.gene056570:CDS |
| CTTCCCAGTGATATAGGAAG+CGG | 0.546539 | 8.2:-31849179 | None:intergenic |
| AAGTTGGGATTCTGTCCAGT+TGG | 0.548304 | 8.2:-31855752 | None:intergenic |
| ACCCTTCACAGATTGTGATA+CGG | 0.548453 | 8.2:-31855672 | None:intergenic |
| TTACTGTAGAACTAATGCTT+GGG | 0.548787 | 8.2:-31855475 | None:intergenic |
| ATGAATGGGTCCACGGTGGG+GGG | 0.550013 | 8.2:-31855431 | None:intergenic |
| TTAATGCGGTTGATTGCAGA+AGG | 0.553103 | 8.2:+31848807 | MS.gene056570:CDS |
| GATCATCAGGGCTTAAGCTA+AGG | 0.553819 | 8.2:+31855006 | MS.gene056570:CDS |
| GACTGACCTTGTTCCAGTGT+CGG | 0.553943 | 8.2:+31854923 | MS.gene056570:CDS |
| TTGTGCCCATTAAAGCATCC+GGG | 0.557960 | 8.2:+31855339 | MS.gene056570:CDS |
| AACTTGTTCAGAGACTTGCT+TGG | 0.559297 | 8.2:+31855770 | MS.gene056570:CDS |
| GCCCGTATCACAATCTGTGA+AGG | 0.559581 | 8.2:+31855670 | MS.gene056570:CDS |
| ATCGGCCGCGAACTCGCCAT+GGG | 0.561265 | 8.2:+31844643 | MS.gene056570:CDS |
| ATCACCTGAACGAAAGGAGC+CGG | 0.561526 | 8.2:-31845396 | None:intergenic |
| TTGTTGAGCTTCTTTCGCAT+GGG | 0.561760 | 8.2:+31845109 | MS.gene056570:CDS |
| GTCAACGATCACTTCCACAT+TGG | 0.561875 | 8.2:-31848516 | None:intergenic |
| CTTCTCTACGTTGAAATGCT+CGG | 0.563060 | 8.2:+31844841 | MS.gene056570:CDS |
| TCCAGCAGGCTATAGAAAGT+GGG | 0.565415 | 8.2:+31854733 | MS.gene056570:CDS |
| CTATATAGCTTCTCGATGTG+TGG | 0.566142 | 8.2:+31848586 | MS.gene056570:CDS |
| ATAACAATCACCTGAACGAA+AGG | 0.567560 | 8.2:-31845402 | None:intergenic |
| GGATGCAAAAGTCAGGCAGA+TGG | 0.568516 | 8.2:+31855721 | MS.gene056570:CDS |
| TTGATGGTGTTCAGAAGAAG+TGG | 0.570317 | 8.2:+31855030 | MS.gene056570:CDS |
| TGGTGCTGCAGACAGACCTC+AGG | 0.571390 | 8.2:+31855301 | MS.gene056570:CDS |
| ACAACTAACGGCAAAACGGC+AGG | 0.571577 | 8.2:-31845090 | None:intergenic |
| GATGCAAAAGTCAGGCAGAT+GGG | 0.571902 | 8.2:+31855722 | MS.gene056570:CDS |
| TTGCTGCAAATCAGTGGAGT+GGG | 0.571915 | 8.2:-31853385 | None:intergenic |
| TGAGGCTTATGAAGTTCCAA+AGG | 0.572646 | 8.2:+31854857 | MS.gene056570:CDS |
| TTCGTCATTAGAATATGCCT+CGG | 0.573125 | 8.2:-31849215 | None:intergenic |
| ATTCGCCACAAGATGTGAAA+CGG | 0.573906 | 8.2:-31845196 | None:intergenic |
| ACTACCTGAAGAAACACTGA+TGG | 0.574197 | 8.2:-31849015 | None:intergenic |
| AATAGCAGCTGGGAGGAAAG+TGG | 0.575708 | 8.2:+31851862 | MS.gene056570:CDS |
| TCTAGTGAACAGAGTGGCGG+CGG | 0.576070 | 8.2:+31855560 | MS.gene056570:CDS |
| CACTGGAACAAGGTCAGTCG+TGG | 0.576617 | 8.2:-31854919 | None:intergenic |
| GTTGGGATTCTGTCCAGTTG+GGG | 0.577231 | 8.2:-31855750 | None:intergenic |
| GTGGAGGAGATTGTTGATTG+GGG | 0.582687 | 8.2:-31855367 | None:intergenic |
| CCTGCTGGATATAATCATTG+AGG | 0.583089 | 8.2:-31854719 | None:intergenic |
| TGTATAAACCAATGATTACT+CGG | 0.587543 | 8.2:-31848629 | None:intergenic |
| GCAGCAGCTTCTAACAACTT+GGG | 0.588158 | 8.2:-31846776 | None:intergenic |
| AGATTGTGTGATAATGATCC+TGG | 0.589052 | 8.2:+31845228 | MS.gene056570:CDS |
| GAACGCGCCTTGTGATCCCA+TGG | 0.589618 | 8.2:-31844659 | None:intergenic |
| TGATGTTGTTCTGCAATAAG+CGG | 0.590067 | 8.2:-31847004 | None:intergenic |
| AGGCGCGTTCGGTCAATCAA+AGG | 0.591815 | 8.2:+31844672 | MS.gene056570:CDS |
| GTCGGACTCATTGTATGCGA+GGG | 0.592330 | 8.2:+31854941 | MS.gene056570:CDS |
| TGTTATTGGTTTGGATGCAC+GGG | 0.595115 | 8.2:+31853428 | MS.gene056570:CDS |
| AGCTGCTGCATTTGACAACC+CGG | 0.596068 | 8.2:-31855615 | None:intergenic |
| GCATACAATGAGTCCGACAC+TGG | 0.596909 | 8.2:-31854936 | None:intergenic |
| TGATCATGTACTCAATCATA+CGG | 0.597576 | 8.2:-31848538 | None:intergenic |
| TACCTCTAAGCAGTCAATGA+CGG | 0.597831 | 8.2:-31847032 | None:intergenic |
| TGCCAGTTGCGAAGACATTG+AGG | 0.598185 | 8.2:+31853476 | MS.gene056570:CDS |
| AATCTTCTCTCAAAACGCAC+CGG | 0.598198 | 8.2:+31844916 | MS.gene056570:CDS |
| GATTGCAGAAGGATTTGGAG+AGG | 0.602461 | 8.2:+31848818 | MS.gene056570:CDS |
| TTGCATGAATGGGTCCACGG+TGG | 0.602753 | 8.2:-31855435 | None:intergenic |
| GATGCTGGAGATGAATAAGC+TGG | 0.602865 | 8.2:-31855059 | None:intergenic |
| TGAGATCGTGATCGTCGTTG+AGG | 0.605493 | 8.2:-31844960 | None:intergenic |
| AGCGCGTTGCTGCAAATCAG+TGG | 0.605784 | 8.2:-31853391 | None:intergenic |
| AGAGAACGAGCGCTCTGGAG+CGG | 0.605954 | 8.2:+31854773 | MS.gene056570:CDS |
| TGTCGGACTCATTGTATGCG+AGG | 0.606090 | 8.2:+31854940 | MS.gene056570:CDS |
| AAGGTTCCAAAAGCTAATGT+TGG | 0.606418 | 8.2:+31855281 | MS.gene056570:CDS |
| AGCAGCTGTCAGAGGCACAA+CGG | 0.606641 | 8.2:+31855631 | MS.gene056570:CDS |
| CAGCAAGAATCTGGACAGCA+TGG | 0.608062 | 8.2:+31854825 | MS.gene056570:CDS |
| GACTCACCAGATCACGTCAG+TGG | 0.610506 | 8.2:+31854965 | MS.gene056570:CDS |
| TGATGGTGTTCAGAAGAAGT+GGG | 0.611696 | 8.2:+31855031 | MS.gene056570:CDS |
| CTATGATTATCACCAGATGC+CGG | 0.613011 | 8.2:+31845377 | MS.gene056570:CDS |
| TCCAGTGAATGGCATGACAA+AGG | 0.613450 | 8.2:+31855109 | MS.gene056570:CDS |
| TATGGAAGAGACACAGCGAA+TGG | 0.616828 | 8.2:-31846744 | None:intergenic |
| ATTCCGCTTCCTATATCACT+GGG | 0.617876 | 8.2:+31849176 | MS.gene056570:CDS |
| GAACTCGCCATGGGATCACA+AGG | 0.618854 | 8.2:+31844652 | MS.gene056570:CDS |
| CCCAAGTCAAGCAAATCTTG+TGG | 0.620345 | 8.2:-31855386 | None:intergenic |
| CAAGTTGTTAGAAGCTGCTG+CGG | 0.622141 | 8.2:+31846778 | MS.gene056570:CDS |
| CCCGTATCACAATCTGTGAA+GGG | 0.622447 | 8.2:+31855671 | MS.gene056570:CDS |
| ATGCGTTTGAAATAGCAGCT+GGG | 0.623907 | 8.2:+31851852 | MS.gene056570:CDS |
| TAGTTGCATGAATGGGTCCA+CGG | 0.625443 | 8.2:-31855438 | None:intergenic |
| ACAAGATCCTTATACGGACT+CGG | 0.627246 | 8.2:-31845300 | None:intergenic |
| GTCGTCCGTTTCACATCTTG+TGG | 0.628035 | 8.2:+31845191 | MS.gene056570:CDS |
| TCAAATGCAGCAGCTGTCAG+AGG | 0.630728 | 8.2:+31855623 | MS.gene056570:CDS |
| GAAAGAAGCTCAACAACTAA+CGG | 0.631117 | 8.2:-31845102 | None:intergenic |
| ATTGGCGATATAATTAGGAA+GGG | 0.632401 | 8.2:+31846680 | MS.gene056570:CDS |
| ACTCACCAGATCACGTCAGT+GGG | 0.633090 | 8.2:+31854966 | MS.gene056570:CDS |
| GTTGCTGCAAATCAGTGGAG+TGG | 0.633925 | 8.2:-31853386 | None:intergenic |
| CGATCTCAGCTGACTATATG+CGG | 0.636229 | 8.2:-31848850 | None:intergenic |
| GAAGTTATGCGATATGGCCG+AGG | 0.636501 | 8.2:+31849198 | MS.gene056570:CDS |
| AGTCATAATCTGAAATACAT+GGG | 0.639996 | 8.2:+31846947 | MS.gene056570:CDS |
| ATGAGTCCGACACTGGAACA+AGG | 0.640091 | 8.2:-31854929 | None:intergenic |
| GAAAGTGGATATGCTATCTG+AGG | 0.642288 | 8.2:+31851877 | MS.gene056570:CDS |
| TCTTCGCAACTGGCATCATG+TGG | 0.645470 | 8.2:-31853468 | None:intergenic |
| ACAGATTGTGATACGGGCGA+CGG | 0.646894 | 8.2:-31855665 | None:intergenic |
| AGAACCGCCAAACAATGAAG+CGG | 0.647321 | 8.2:-31855225 | None:intergenic |
| GGCGGCTATAACTCTGCAAG+TGG | 0.651068 | 8.2:+31855581 | MS.gene056570:CDS |
| AAGAACATCAACTAGCAGCA+AGG | 0.653866 | 8.2:+31855262 | MS.gene056570:CDS |
| AGGTTGCACATAATTTAATG+CGG | 0.654401 | 8.2:+31848793 | MS.gene056570:CDS |
| TCTTTCGCATGGGAAAGAAG+CGG | 0.658045 | 8.2:+31845119 | MS.gene056570:CDS |
| AGAGTAGCACCCATAACACC+AGG | 0.658462 | 8.2:-31845246 | None:intergenic |
| CATCAGATACAGGATCATCA+GGG | 0.658760 | 8.2:+31854994 | MS.gene056570:CDS |
| AGTGAATGGCATGACAAAGG+TGG | 0.661156 | 8.2:+31855112 | MS.gene056570:CDS |
| CCAGCAGGCTATAGAAAGTG+GGG | 0.661545 | 8.2:+31854734 | MS.gene056570:CDS |
| TACATGGGTATTGATGCTCT+CGG | 0.662992 | 8.2:+31846962 | MS.gene056570:CDS |
| AAGTCAAGCAAATCTTGTGG+AGG | 0.665010 | 8.2:-31855383 | None:intergenic |
| TAAGTGCAGCACAAACGACA+AGG | 0.667985 | 8.2:-31845032 | None:intergenic |
| TCGCTTATAAGATCAAACAA+AGG | 0.675984 | 8.2:-31845273 | None:intergenic |
| AATGACCAAGTCTTCCAATG+TGG | 0.681347 | 8.2:+31848502 | MS.gene056570:CDS |
| TGTGCCCATTAAAGCATCCG+GGG | 0.682990 | 8.2:+31855340 | MS.gene056570:CDS |
| GATGGTGTTCAGAAGAAGTG+GGG | 0.704018 | 8.2:+31855032 | MS.gene056570:CDS |
| CGTTTGAAATAGCAGCTGGG+AGG | 0.708061 | 8.2:+31851855 | MS.gene056570:CDS |
| TATTATGGGACTCTATAGTG+GGG | 0.715463 | 8.2:+31855532 | MS.gene056570:CDS |
| ACTTCTAGTGAACAGAGTGG+CGG | 0.737026 | 8.2:+31855557 | MS.gene056570:CDS |
| AGAAGCGGTTAGGAAGAAAG+CGG | 0.739854 | 8.2:+31845134 | MS.gene056570:CDS |
| GCTACTTCTAGTGAACAGAG+TGG | 0.783983 | 8.2:+31855554 | MS.gene056570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 31844625 | 31855796 | 31844625 | ID=MS.gene056570 |
| chr8.2 | mRNA | 31844625 | 31855796 | 31844625 | ID=MS.gene056570.t1;Parent=MS.gene056570 |
| chr8.2 | exon | 31844625 | 31845413 | 31844625 | ID=MS.gene056570.t1.exon1;Parent=MS.gene056570.t1 |
| chr8.2 | CDS | 31844625 | 31845413 | 31844625 | ID=cds.MS.gene056570.t1;Parent=MS.gene056570.t1 |
| chr8.2 | exon | 31846608 | 31846823 | 31846608 | ID=MS.gene056570.t1.exon2;Parent=MS.gene056570.t1 |
| chr8.2 | CDS | 31846608 | 31846823 | 31846608 | ID=cds.MS.gene056570.t1;Parent=MS.gene056570.t1 |
| chr8.2 | exon | 31846941 | 31847051 | 31846941 | ID=MS.gene056570.t1.exon3;Parent=MS.gene056570.t1 |
| chr8.2 | CDS | 31846941 | 31847051 | 31846941 | ID=cds.MS.gene056570.t1;Parent=MS.gene056570.t1 |
| chr8.2 | exon | 31848455 | 31848652 | 31848455 | ID=MS.gene056570.t1.exon4;Parent=MS.gene056570.t1 |
| chr8.2 | CDS | 31848455 | 31848652 | 31848455 | ID=cds.MS.gene056570.t1;Parent=MS.gene056570.t1 |
| chr8.2 | exon | 31848747 | 31848878 | 31848747 | ID=MS.gene056570.t1.exon5;Parent=MS.gene056570.t1 |
| chr8.2 | CDS | 31848747 | 31848878 | 31848747 | ID=cds.MS.gene056570.t1;Parent=MS.gene056570.t1 |
| chr8.2 | exon | 31848976 | 31849032 | 31848976 | ID=MS.gene056570.t1.exon6;Parent=MS.gene056570.t1 |
| chr8.2 | CDS | 31848976 | 31849032 | 31848976 | ID=cds.MS.gene056570.t1;Parent=MS.gene056570.t1 |
| chr8.2 | exon | 31849130 | 31849246 | 31849130 | ID=MS.gene056570.t1.exon7;Parent=MS.gene056570.t1 |
| chr8.2 | CDS | 31849130 | 31849246 | 31849130 | ID=cds.MS.gene056570.t1;Parent=MS.gene056570.t1 |
| chr8.2 | exon | 31851821 | 31851898 | 31851821 | ID=MS.gene056570.t1.exon8;Parent=MS.gene056570.t1 |
| chr8.2 | CDS | 31851821 | 31851898 | 31851821 | ID=cds.MS.gene056570.t1;Parent=MS.gene056570.t1 |
| chr8.2 | exon | 31853354 | 31853497 | 31853354 | ID=MS.gene056570.t1.exon9;Parent=MS.gene056570.t1 |
| chr8.2 | CDS | 31853354 | 31853497 | 31853354 | ID=cds.MS.gene056570.t1;Parent=MS.gene056570.t1 |
| chr8.2 | exon | 31854699 | 31855796 | 31854699 | ID=MS.gene056570.t1.exon10;Parent=MS.gene056570.t1 |
| chr8.2 | CDS | 31854699 | 31855796 | 31854699 | ID=cds.MS.gene056570.t1;Parent=MS.gene056570.t1 |
| Gene Sequence |
| Protein sequence |