AlfalfaGEDB | MS.gene89638

M. sativa cultivar XinJiangDaYe / MS.gene89638

KEGG: -
GO: -
PFAM: PF11833.11

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89638.t1	XP_003629355.1	96.8	282	9	0	1	282	1	282	2.40E-144	521.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89638.t1	Q9FN50	39.1	220	122	5	66	281	46	257	6.1e-32	139.4

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89638.t1	G7LD00	96.8	282	9	0	1	282	1	282	1.7e-144	521.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049284	MS.gene89638	0.801171	1.02E-48	-1.69E-46
MS.gene049297	MS.gene89638	0.82288	1.87E-53	-1.69E-46
MS.gene049758	MS.gene89638	0.860682	1.74E-63	-1.69E-46
MS.gene050076	MS.gene89638	0.807651	4.56E-50	-1.69E-46
MS.gene050099	MS.gene89638	0.859746	3.34E-63	-1.69E-46
MS.gene050301	MS.gene89638	0.820837	5.55E-53	-1.69E-46
MS.gene050397	MS.gene89638	0.810622	1.05E-50	-1.69E-46
MS.gene050529	MS.gene89638	0.841539	4.47E-58	-1.69E-46
MS.gene050558	MS.gene89638	0.810636	1.04E-50	-1.69E-46
MS.gene050642	MS.gene89638	0.836749	7.80E-57	-1.69E-46

Showing 1 to 10 of 57 entries

Previous1 2 3 4 5 6Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene89638	MS.gene033008	PPI
MS.gene89638	MS.gene68971	PPI
MS.gene89638	MS.gene044507	PPI
MS.gene89638	MS.gene038794	PPI

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89638.t1	MTR_8g076220	96.809	282	9	0	1	282	1	282	0.0	553
MS.gene89638.t1	MTR_4g112540	37.327	217	128	4	67	281	40	250	6.84e-45	152

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89638.t1	AT3G51140	62.055	253	89	3	30	281	31	277	1.27e-110	321
MS.gene89638.t1	AT3G51140	58.621	203	79	2	30	231	31	229	1.67e-80	243
MS.gene89638.t1	AT5G23040	38.739	222	124	5	64	281	44	257	5.83e-45	153
MS.gene89638.t1	AT5G23040	38.739	222	124	5	64	281	44	257	5.83e-45	153

Showing 1 to 4 of 4 entries

Previous1Next

Find 66 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCCATGACCCGAACA+CGG	0.665683	8.3:-27690438	None:intergenic
AAGAAGAAATTCAAGCAGCT+AGG	0.603879	8.3:+27692124	MS.gene89638:CDS
AAGGACAGTGTTTCCCAGTG+TGG	0.631476	8.3:+27690483	MS.gene89638:CDS
AAGTGTAGATTCAATTGAGT+CGG	0.607184	8.3:+27692182	MS.gene89638:CDS
AATTACTGACACCATCAAGA+AGG	0.623704	8.3:-27693106	None:intergenic
AGGATAAGAGCTTTGCTTTA+TGG	0.229239	8.3:+27692480	MS.gene89638:CDS
AGGCAACGAGGAGGTAATTG+GGG	0.569451	8.3:-27690406	None:intergenic
AGTGATCCATATAAACGACT+TGG	0.585347	8.3:+27692081	MS.gene89638:CDS
AGTGCTATGGATGCTTCATT+TGG	0.476376	8.3:+27690674	MS.gene89638:CDS
AGTGTTGGCCCTTCCTCGGT+TGG	0.487936	8.3:-27692399	None:intergenic

Showing 1 to 10 of 66 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATTAGGAATCAGTTTCCT+TGG	+	chr8.3:27691061-27691080	MS.gene89638:intron	30.0%
AACTAACTAACTAACTACCA+AGG	-	chr8.3:27691081-27691100	None:intergenic	30.0%
AAGTGTAGATTCAATTGAGT+CGG	+	chr8.3:27692182-27692201	MS.gene89638:CDS	30.0%
AATGTCATACAATGAGAACA+AGG	-	chr8.3:27692966-27692985	None:intergenic	30.0%
ACAGATTTCAACCAAAACAA+AGG	-	chr8.3:27691839-27691858	None:intergenic	30.0%
AGAGGGATTTCAATATGATA+AGG	-	chr8.3:27691656-27691675	None:intergenic	30.0%
ATGTCATACAATGAGAACAA+GGG	-	chr8.3:27692965-27692984	None:intergenic	30.0%
CAACGTATTTCGTATATGAT+CGG	+	chr8.3:27692448-27692467	MS.gene89638:CDS	30.0%
CAGATTTCAACCAAAACAAA+GGG	-	chr8.3:27691838-27691857	None:intergenic	30.0%
CAGTTAAACAACTGCTTTAT+GGG	+	chr8.3:27691473-27691492	MS.gene89638:intron	30.0%

Showing 1 to 10 of 212 entries

Previous1 2 3 4 5…22Next

Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	27690367	27693227	27690367	ID=MS.gene89638
chr8.3	mRNA	27690367	27693227	27690367	ID=MS.gene89638.t1;Parent=MS.gene89638
chr8.3	exon	27690367	27690509	27690367	ID=MS.gene89638.t1.exon1;Parent=MS.gene89638.t1
chr8.3	CDS	27690367	27690509	27690367	ID=cds.MS.gene89638.t1;Parent=MS.gene89638.t1
chr8.3	exon	27690616	27690719	27690616	ID=MS.gene89638.t1.exon2;Parent=MS.gene89638.t1
chr8.3	CDS	27690616	27690719	27690616	ID=cds.MS.gene89638.t1;Parent=MS.gene89638.t1
chr8.3	exon	27692058	27692502	27692058	ID=MS.gene89638.t1.exon3;Parent=MS.gene89638.t1
chr8.3	CDS	27692058	27692502	27692058	ID=cds.MS.gene89638.t1;Parent=MS.gene89638.t1
chr8.3	exon	27693071	27693227	27693071	ID=MS.gene89638.t1.exon4;Parent=MS.gene89638.t1
chr8.3	CDS	27693071	27693227	27693071	ID=cds.MS.gene89638.t1;Parent=MS.gene89638.t1

Gene Sequence

>MS.gene89638

ATGATTGTATCTGGGTTGAGTGGTAGTCTCTCAAGATGCCCCCAATTACCTCCTCGTTGCCTCGAATCACGCCGTGTTCGGGTCATGGCATTTTCTGTGGCTGGTAAACGTATACAAAGGACAGTGTTTCCCAGTGTGGAAAGGTATGCCTAATGAATCATTACTTTTTGAACTTGGAACTTTATGTAAGGTTCATGTTTTGTTGAATGGTAAACAATTCATTATTTTCCTTACCCTGTCAATTTGCAGAACCAGTTTTTCATCTCCTAGATTAAAATGTGATAGAGGACAAATTCAATTGGTCAGAAGTGCTATGGATGCTTCATTTGGTGATATGTCAAATGATTCTGCTGGTAACTTTTCTATCTCGACGAACTCAATTCTTATATTTCATGATACATAAAATGGATCTAGTAAAACTGGTATTTAAGTTAAATAGTATGTTTTCTGAAACAATACGGGTAGTGAAGATGAAACTTGAAAATGATTCTGTGATCATTATGGATGTTTGGTTCTCTTGTGGATGCTAGACTACATTTTTTTTTCCTGTGATCTTACTCATTTGGTTTGCTAAGTTGAAGCTATTTCTTCGTCTTCATAATTGTTGGTGCCTGAGAAGCTGAACTAAAATAGGATAAAAATAGAGTGATACTGTTAGAGATAATTATTGTAGAAGAAAGTATAGGAGTATGGGAAATTAGGAATCAGTTTCCTTGGTAGTTAGTTAGTTAGTTAGGATTTGGGTAGTGGTTAGTTTTTCTGTTTTAGGATAGTTGCTTTAGATCCTTTAATCCTTATCGTGCACAGGAAGTCTGTAAATAAAGACTTCCTTCCTTGTTTGATGGATGTTTTGCAAAACTTAGTATTTGACTTGTTTTGTCCAGTGTGAAGAGAGTATCTTTTACCTTTTCATATCAATAAATTTACAGGGATGGATAAATTTCCTTTCTGCTTTTGTTCTTTAAAAAGAATCCCAAGAGATGCATTACAAGCCCGAGAGGGTAGGTGGCTAAACCATAAGGAGTTCAAAGAGGAAATTGTTTTTCAGTTTTGTTTAGTTTTTTTTTTTTTTCCTCGGCATGTGGGGTGGGGGGGAACTGTTTTTTCAGTTAAACAACTGCTTTATGGGTGACAGACAGATGTTGGCTTAAAGTTTGACAAGAATGACTGTTTCCCGTCTTCCCTACCCTTGGGCAGAAACCCTCTCGTGTTTCACATGAATCATGACCTTCTTCCCCGCCCTTAAGCAGAGACCCTCTCATGTTAAGTTTTCACAAGTGTCATGACCTTATCATATTGAAATCCCTCTCTTCCCCTTTCTCGATGGTTATTCATAAGTTATAGAACCCACTTATTTAATGTTTAGAGAGAGAGACAGAGAGTGATGCACACATACACACACAATTTTCAGATAACAATGTCATATGTCAGCATTTAACACGAGGTGATCCATTTGTGCCACTCCCAACCCTTTGTTTTGGTTGAAATCTGTGAAACGTGTTTACTTGCATGTCTTAAGGGTCCTCTCTGTAACAATAATTGGCACCTCTATAAATTATTTTGCACCTTATCCATATGATCTATAAATTATTTTGCACCTTATCCATATGATATTTGAATCACCTTATATAAAACCAACAATAAGTTATAGCTTAACTTATTATTTTGCTGCTCCTTTGCTACAAATGCAGCTGTTTTCCCAAGAATTAATGTGAGTGATCCATATAAACGACTTGGAATAAGCAAGGAAGCTTCTGAAGAAGAAATTCAAGCAGCTAGGAACTTCCTGATTCAGAAATATGCAGGGCACAAGCCAAGTGTAGATTCAATTGAGTCGGCGCATGACAAAATAATCATGAAGAAATTCTACGAGCGCAGAAACCCAAAAATTGACATCAACAAAAAAATTAGGGCAGTCAATCAATCCCGATTCGTTCAGGCTGTCAGAGGCAGATTTCGCACTCCATCCACTATATTCATTATAAAAACTTCACTGGCATTTTTGTTACTTGGTGTTCTGACCGTTCTCTTTCCAACCGAGGAAGGGCCAACACTTCAGGTTGCAATATCTCTGTTCGTCACAACGTATTTCGTATATGATCGGCTGAAGAGCAGGATAAGAGCTTTGCTTTATGGGTATGTAAACATTGATTTCTCTCACTCTTCTAAATTTTTTAAACGTATAGTACTTCACCTGATGATATTGTCTGCTAGACCATTGTTGAGCATTTTTCATTTTGATAGCATAACTTAGGGTGCGTTTGTTTCAGCTTTAAAAAAAAAATAGATTTTGAGTTGGAAGAATCTAGAGATTTTTTTTTTAGAGATTTTTAAAAAAATCTAAAGCTATTTCTGTTTGTTTACTATCATAAAAATCATTTGTTGAAGATTTGAAGCTCTTACACTTGAGTTCCTTATGTTTAGAAAAAAATAGATTTTGGAAAAGCTACTTGAAATAGCTTTTCATTTTGAGGCTAAAAATGATTTTTTTTTTTAAATGGATTTTTTAAAAATCTAAAACAAAGACTACAAAAATAAAAGTGATTTTTTTAGATAAAAAATAGATTTTTTTCAAAAAAATTCAAAACAAACGGGCCCTTGTTCTCATTGTATGACATTCTGATATTAATATCATTTTGATGCATTTATGGTTTTTCTCTCAGCTTCTTAGGTTCTGCTTATTTATATCCGTACTTTGGTGCAGGGTTGGAGCATTTATCTTTTCGTGGCTGTTGGGAACCTTCTTGATGGTGTCAGTAATTCCTCCCATTCCTATAATCAAGGGACCAAGGGCATTTGAGGTGATCACATCGTTGATAACATATGTTTTATTATGGGTTTCATCGACCTATCTTATATGA

Protein sequence

>MS.gene89638.t1

MIVSGLSGSLSRCPQLPPRCLESRRVRVMAFSVAGKRIQRTVFPSVERTSFSSPRLKCDRGQIQLVRSAMDASFGDMSNDSAAVFPRINVSDPYKRLGISKEASEEEIQAARNFLIQKYAGHKPSVDSIESAHDKIIMKKFYERRNPKIDINKKIRAVNQSRFVQAVRGRFRTPSTIFIIKTSLAFLLLGVLTVLFPTEEGPTLQVAISLFVTTYFVYDRLKSRIRALLYGVGAFIFSWLLGTFLMVSVIPPIPIIKGPRAFEVITSLITYVLLWVSSTYLI