Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89638.t1 | XP_003629355.1 | 96.8 | 282 | 9 | 0 | 1 | 282 | 1 | 282 | 2.40E-144 | 521.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89638.t1 | Q9FN50 | 39.1 | 220 | 122 | 5 | 66 | 281 | 46 | 257 | 6.1e-32 | 139.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89638.t1 | G7LD00 | 96.8 | 282 | 9 | 0 | 1 | 282 | 1 | 282 | 1.7e-144 | 521.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049284 | MS.gene89638 | 0.801171 | 1.02E-48 | -1.69E-46 |
MS.gene049297 | MS.gene89638 | 0.82288 | 1.87E-53 | -1.69E-46 |
MS.gene049758 | MS.gene89638 | 0.860682 | 1.74E-63 | -1.69E-46 |
MS.gene050076 | MS.gene89638 | 0.807651 | 4.56E-50 | -1.69E-46 |
MS.gene050099 | MS.gene89638 | 0.859746 | 3.34E-63 | -1.69E-46 |
MS.gene050301 | MS.gene89638 | 0.820837 | 5.55E-53 | -1.69E-46 |
MS.gene050397 | MS.gene89638 | 0.810622 | 1.05E-50 | -1.69E-46 |
MS.gene050529 | MS.gene89638 | 0.841539 | 4.47E-58 | -1.69E-46 |
MS.gene050558 | MS.gene89638 | 0.810636 | 1.04E-50 | -1.69E-46 |
MS.gene050642 | MS.gene89638 | 0.836749 | 7.80E-57 | -1.69E-46 |
MS.gene05101 | MS.gene89638 | 0.817312 | 3.52E-52 | -1.69E-46 |
MS.gene051240 | MS.gene89638 | 0.829843 | 4.10E-55 | -1.69E-46 |
MS.gene051242 | MS.gene89638 | 0.813088 | 3.06E-51 | -1.69E-46 |
MS.gene051257 | MS.gene89638 | 0.813662 | 2.28E-51 | -1.69E-46 |
MS.gene051471 | MS.gene89638 | 0.814399 | 1.57E-51 | -1.69E-46 |
MS.gene051662 | MS.gene89638 | 0.876616 | 1.21E-68 | -1.69E-46 |
MS.gene051663 | MS.gene89638 | 0.85068 | 1.45E-60 | -1.69E-46 |
MS.gene051983 | MS.gene89638 | 0.811623 | 6.38E-51 | -1.69E-46 |
MS.gene052078 | MS.gene89638 | 0.843173 | 1.65E-58 | -1.69E-46 |
MS.gene052178 | MS.gene89638 | 0.824678 | 7.09E-54 | -1.69E-46 |
MS.gene052309 | MS.gene89638 | -0.807632 | 4.60E-50 | -1.69E-46 |
MS.gene052326 | MS.gene89638 | 0.817944 | 2.54E-52 | -1.69E-46 |
MS.gene052344 | MS.gene89638 | -0.810405 | 1.17E-50 | -1.69E-46 |
MS.gene052600 | MS.gene89638 | 0.850524 | 1.61E-60 | -1.69E-46 |
MS.gene053557 | MS.gene89638 | 0.821166 | 4.66E-53 | -1.69E-46 |
MS.gene053836 | MS.gene89638 | 0.858981 | 5.67E-63 | -1.69E-46 |
MS.gene053907 | MS.gene89638 | 0.804358 | 2.24E-49 | -1.69E-46 |
MS.gene053971 | MS.gene89638 | 0.833315 | 5.72E-56 | -1.69E-46 |
MS.gene054942 | MS.gene89638 | 0.835604 | 1.52E-56 | -1.69E-46 |
MS.gene055277 | MS.gene89638 | 0.859693 | 3.47E-63 | -1.69E-46 |
MS.gene055390 | MS.gene89638 | 0.803986 | 2.68E-49 | -1.69E-46 |
MS.gene055422 | MS.gene89638 | 0.851427 | 8.94E-61 | -1.69E-46 |
MS.gene055428 | MS.gene89638 | 0.870668 | 1.23E-66 | -1.69E-46 |
MS.gene055712 | MS.gene89638 | 0.803404 | 3.54E-49 | -1.69E-46 |
MS.gene056612 | MS.gene89638 | 0.842007 | 3.36E-58 | -1.69E-46 |
MS.gene056796 | MS.gene89638 | 0.829879 | 4.02E-55 | -1.69E-46 |
MS.gene05702 | MS.gene89638 | 0.808189 | 3.50E-50 | -1.69E-46 |
MS.gene057121 | MS.gene89638 | 0.838458 | 2.84E-57 | -1.69E-46 |
MS.gene057260 | MS.gene89638 | 0.817755 | 2.80E-52 | -1.69E-46 |
MS.gene057439 | MS.gene89638 | 0.849552 | 3.01E-60 | -1.69E-46 |
MS.gene058002 | MS.gene89638 | 0.844052 | 9.60E-59 | -1.69E-46 |
MS.gene05811 | MS.gene89638 | 0.852447 | 4.59E-61 | -1.69E-46 |
MS.gene058142 | MS.gene89638 | 0.802176 | 6.35E-49 | -1.69E-46 |
MS.gene058233 | MS.gene89638 | 0.817975 | 2.50E-52 | -1.69E-46 |
MS.gene058276 | MS.gene89638 | 0.850815 | 1.33E-60 | -1.69E-46 |
MS.gene058833 | MS.gene89638 | 0.802748 | 4.84E-49 | -1.69E-46 |
MS.gene058845 | MS.gene89638 | 0.82448 | 7.89E-54 | -1.69E-46 |
MS.gene05907 | MS.gene89638 | 0.822404 | 2.41E-53 | -1.69E-46 |
MS.gene059326 | MS.gene89638 | 0.816161 | 6.38E-52 | -1.69E-46 |
MS.gene059518 | MS.gene89638 | 0.844567 | 6.98E-59 | -1.69E-46 |
MS.gene059597 | MS.gene89638 | 0.80753 | 4.83E-50 | -1.69E-46 |
MS.gene05984 | MS.gene89638 | 0.844153 | 9.02E-59 | -1.69E-46 |
MS.gene059894 | MS.gene89638 | 0.86331 | 2.73E-64 | -1.69E-46 |
MS.gene059899 | MS.gene89638 | 0.819958 | 8.83E-53 | -1.69E-46 |
MS.gene060476 | MS.gene89638 | 0.831171 | 1.94E-55 | -1.69E-46 |
MS.gene06090 | MS.gene89638 | 0.809473 | 1.86E-50 | -1.69E-46 |
MS.gene061049 | MS.gene89638 | 0.82607 | 3.32E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene89638 | MS.gene033008 | PPI |
MS.gene89638 | MS.gene68971 | PPI |
MS.gene89638 | MS.gene044507 | PPI |
MS.gene89638 | MS.gene038794 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89638.t1 | MTR_8g076220 | 96.809 | 282 | 9 | 0 | 1 | 282 | 1 | 282 | 0.0 | 553 |
MS.gene89638.t1 | MTR_4g112540 | 37.327 | 217 | 128 | 4 | 67 | 281 | 40 | 250 | 6.84e-45 | 152 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89638.t1 | AT3G51140 | 62.055 | 253 | 89 | 3 | 30 | 281 | 31 | 277 | 1.27e-110 | 321 |
MS.gene89638.t1 | AT3G51140 | 58.621 | 203 | 79 | 2 | 30 | 231 | 31 | 229 | 1.67e-80 | 243 |
MS.gene89638.t1 | AT5G23040 | 38.739 | 222 | 124 | 5 | 64 | 281 | 44 | 257 | 5.83e-45 | 153 |
MS.gene89638.t1 | AT5G23040 | 38.739 | 222 | 124 | 5 | 64 | 281 | 44 | 257 | 5.83e-45 | 153 |
Find 66 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTATAACAATGATTGTATC+TGG | 0.187129 | 8.3:+27690358 | None:intergenic |
CGAGGCAACGAGGAGGTAAT+TGG | 0.227784 | 8.3:-27690408 | None:intergenic |
AGGATAAGAGCTTTGCTTTA+TGG | 0.229239 | 8.3:+27692480 | MS.gene89638:CDS |
CTTATTCCAAGTCGTTTATA+TGG | 0.238305 | 8.3:-27692087 | None:intergenic |
GCCCTTGGTCCCTTGATTAT+AGG | 0.265287 | 8.3:-27693138 | None:intergenic |
GCCTCGAATCACGCCGTGTT+CGG | 0.266223 | 8.3:+27690425 | MS.gene89638:CDS |
GGATAAGAGCTTTGCTTTAT+GGG | 0.286176 | 8.3:+27692481 | MS.gene89638:CDS |
GGATCACTCACATTAATTCT+TGG | 0.315349 | 8.3:-27692066 | None:intergenic |
CGAGGAAGGGCCAACACTTC+AGG | 0.348949 | 8.3:+27692404 | MS.gene89638:CDS |
CCTCGAATCACGCCGTGTTC+GGG | 0.353082 | 8.3:+27690426 | MS.gene89638:CDS |
GCCCTGCATATTTCTGAATC+AGG | 0.356185 | 8.3:-27692152 | None:intergenic |
GAGGCAACGAGGAGGTAATT+GGG | 0.389953 | 8.3:-27690407 | None:intergenic |
GCTGTTGGGAACCTTCTTGA+TGG | 0.390968 | 8.3:+27693095 | MS.gene89638:CDS |
GATCACTCACATTAATTCTT+GGG | 0.397690 | 8.3:-27692065 | None:intergenic |
CAATCAATCCCGATTCGTTC+AGG | 0.407889 | 8.3:+27692284 | MS.gene89638:CDS |
CTCTGACAGCCTGAACGAAT+CGG | 0.408522 | 8.3:-27692293 | None:intergenic |
CAAGGGACCAAGGGCATTTG+AGG | 0.437968 | 8.3:+27693146 | MS.gene89638:CDS |
CTTTAGCCTTCATATAAGAT+AGG | 0.451503 | 8.3:-27693214 | None:intergenic |
TCCTCCCATTCCTATAATCA+AGG | 0.453208 | 8.3:+27693128 | MS.gene89638:CDS |
CCCGAACACGGCGTGATTCG+AGG | 0.471269 | 8.3:-27690426 | None:intergenic |
TGGTCCCTTGATTATAGGAA+TGG | 0.471280 | 8.3:-27693133 | None:intergenic |
TCTGACAGCCTGAACGAATC+GGG | 0.472429 | 8.3:-27692292 | None:intergenic |
CTGAAGTGTTGGCCCTTCCT+CGG | 0.475487 | 8.3:-27692403 | None:intergenic |
AGTGCTATGGATGCTTCATT+TGG | 0.476376 | 8.3:+27690674 | MS.gene89638:CDS |
ATCACGCCGTGTTCGGGTCA+TGG | 0.476941 | 8.3:+27690432 | MS.gene89638:CDS |
CATCGACCTATCTTATATGA+AGG | 0.484004 | 8.3:+27693208 | MS.gene89638:CDS |
AGTGTTGGCCCTTCCTCGGT+TGG | 0.487936 | 8.3:-27692399 | None:intergenic |
TTCCTGATTCAGAAATATGC+AGG | 0.491805 | 8.3:+27692150 | MS.gene89638:CDS |
CCTAGATTAAAATGTGATAG+AGG | 0.503788 | 8.3:+27690632 | MS.gene89638:CDS |
TGATAGAGGACAAATTCAAT+TGG | 0.504383 | 8.3:+27690646 | MS.gene89638:CDS |
GGTCCCTTGATTATAGGAAT+GGG | 0.504384 | 8.3:-27693132 | None:intergenic |
TATATGATCGGCTGAAGAGC+AGG | 0.515820 | 8.3:+27692460 | MS.gene89638:CDS |
TTATAACAATGATTGTATCT+GGG | 0.516139 | 8.3:+27690359 | None:intergenic |
GACTCAATTGAATCTACACT+TGG | 0.523228 | 8.3:-27692180 | None:intergenic |
TCAATTGGTCAGAAGTGCTA+TGG | 0.523550 | 8.3:+27690661 | MS.gene89638:CDS |
TTTATAATGAATATAGTGGA+TGG | 0.536659 | 8.3:-27692330 | None:intergenic |
TAGGCATACCTTTCCACACT+GGG | 0.543225 | 8.3:-27690496 | None:intergenic |
GATATTGCAACCTGAAGTGT+TGG | 0.546273 | 8.3:-27692414 | None:intergenic |
GTTCTCTTTCCAACCGAGGA+AGG | 0.550887 | 8.3:+27692390 | MS.gene89638:CDS |
TCCTATAATCAAGGGACCAA+GGG | 0.560682 | 8.3:+27693137 | MS.gene89638:CDS |
GTGATCACCTCAAATGCCCT+TGG | 0.562552 | 8.3:-27693153 | None:intergenic |
AGGCAACGAGGAGGTAATTG+GGG | 0.569451 | 8.3:-27690406 | None:intergenic |
CAACGTATTTCGTATATGAT+CGG | 0.574288 | 8.3:+27692448 | MS.gene89638:CDS |
AGTGATCCATATAAACGACT+TGG | 0.585347 | 8.3:+27692081 | MS.gene89638:CDS |
TTCTCTTTCCAACCGAGGAA+GGG | 0.587448 | 8.3:+27692391 | MS.gene89638:CDS |
CCTCCCATTCCTATAATCAA+GGG | 0.591184 | 8.3:+27693129 | MS.gene89638:CDS |
CCCTTGATTATAGGAATGGG+AGG | 0.596769 | 8.3:-27693129 | None:intergenic |
CAGTGTTTCCCAGTGTGGAA+AGG | 0.601488 | 8.3:+27690488 | MS.gene89638:CDS |
TTCCTATAATCAAGGGACCA+AGG | 0.602791 | 8.3:+27693136 | MS.gene89638:CDS |
AAGAAGAAATTCAAGCAGCT+AGG | 0.603879 | 8.3:+27692124 | MS.gene89638:CDS |
CGATTCGTTCAGGCTGTCAG+AGG | 0.606356 | 8.3:+27692294 | MS.gene89638:CDS |
AAGTGTAGATTCAATTGAGT+CGG | 0.607184 | 8.3:+27692182 | MS.gene89638:CDS |
TAAACGACTTGGAATAAGCA+AGG | 0.614927 | 8.3:+27692092 | MS.gene89638:CDS |
AATTACTGACACCATCAAGA+AGG | 0.623704 | 8.3:-27693106 | None:intergenic |
AAGGACAGTGTTTCCCAGTG+TGG | 0.631476 | 8.3:+27690483 | MS.gene89638:CDS |
GACCGTTCTCTTTCCAACCG+AGG | 0.637405 | 8.3:+27692386 | MS.gene89638:CDS |
TTAGGCATACCTTTCCACAC+TGG | 0.639996 | 8.3:-27690497 | None:intergenic |
TCCTGATTCAGAAATATGCA+GGG | 0.647834 | 8.3:+27692151 | MS.gene89638:CDS |
TTCCTCGGTTGGAAAGAGAA+CGG | 0.656823 | 8.3:-27692388 | None:intergenic |
GATATGTCAAATGATTCTGC+TGG | 0.657645 | 8.3:+27690698 | MS.gene89638:CDS |
AAAATGCCATGACCCGAACA+CGG | 0.665683 | 8.3:-27690438 | None:intergenic |
ATGATTGTATCTGGGTTGAG+TGG | 0.684151 | 8.3:+27690367 | MS.gene89638:CDS |
GGCAACGAGGAGGTAATTGG+GGG | 0.687219 | 8.3:-27690405 | None:intergenic |
TGGCTGGTAAACGTATACAA+AGG | 0.690545 | 8.3:+27690464 | MS.gene89638:CDS |
CGGCGTGATTCGAGGCAACG+AGG | 0.707572 | 8.3:-27690418 | None:intergenic |
CGTGATTCGAGGCAACGAGG+AGG | 0.732059 | 8.3:-27690415 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATAATTTATAGATCATA+TGG | - | chr8.3:27691941-27691960 | None:intergenic | 10.0% |
!! | ATATTTCATGATACATAAAA+TGG | + | chr8.3:27690752-27690771 | MS.gene89638:intron | 15.0% |
!! | GTAAATTTATTGATATGAAA+AGG | - | chr8.3:27691274-27691293 | None:intergenic | 15.0% |
!! | TCAAAAAAATTCAAAACAAA+CGG | + | chr8.3:27692938-27692957 | MS.gene89638:intron | 15.0% |
!! | TTCATATCAATAAATTTACA+GGG | + | chr8.3:27691275-27691294 | MS.gene89638:intron | 15.0% |
!! | TTTCATATCAATAAATTTAC+AGG | + | chr8.3:27691274-27691293 | MS.gene89638:intron | 15.0% |
!!! | AAAAAAAATAGATTTTGAGT+TGG | + | chr8.3:27692643-27692662 | MS.gene89638:intron | 15.0% |
!!! | AGTTTTTATAATGAATATAG+TGG | - | chr8.3:27692337-27692356 | None:intergenic | 15.0% |
!!! | GATAACATATGTTTTATTAT+GGG | + | chr8.3:27693182-27693201 | MS.gene89638:CDS | 15.0% |
!!! | GTTTAGAAAAAAATAGATTT+TGG | + | chr8.3:27692785-27692804 | MS.gene89638:intron | 15.0% |
!!! | TAGTTTTTTTTTTTTTTCCT+CGG | + | chr8.3:27691422-27691441 | MS.gene89638:intron | 15.0% |
!!! | TCTATTTTTTTCTAAACATA+AGG | - | chr8.3:27692782-27692801 | None:intergenic | 15.0% |
!!! | TGATAACATATGTTTTATTA+TGG | + | chr8.3:27693181-27693200 | MS.gene89638:CDS | 15.0% |
!! | ATTCAAATATCATATGGATA+AGG | - | chr8.3:27691967-27691986 | None:intergenic | 20.0% |
!! | ATTCATTATAAAAACTTCAC+TGG | + | chr8.3:27692341-27692360 | MS.gene89638:CDS | 20.0% |
!! | ATTTATAGATCATATGGATA+AGG | - | chr8.3:27691935-27691954 | None:intergenic | 20.0% |
!! | CAAAAAAATTCAAAACAAAC+GGG | + | chr8.3:27692939-27692958 | MS.gene89638:intron | 20.0% |
!! | TCAAAAAGTAATGATTCATT+AGG | - | chr8.3:27690518-27690537 | None:intergenic | 20.0% |
!! | TCTCTAAACATTAAATAAGT+GGG | - | chr8.3:27691716-27691735 | None:intergenic | 20.0% |
!! | TGACATCAACAAAAAAATTA+GGG | + | chr8.3:27692257-27692276 | MS.gene89638:CDS | 20.0% |
!! | TTGACATCAACAAAAAAATT+AGG | + | chr8.3:27692256-27692275 | MS.gene89638:CDS | 20.0% |
!!! | ATATCATTTTGATGCATTTA+TGG | + | chr8.3:27692995-27693014 | MS.gene89638:intron | 20.0% |
!!! | ATTATTGTAGAAGAAAGTAT+AGG | + | chr8.3:27691030-27691049 | MS.gene89638:intron | 20.0% |
!!! | CTTATTGTTGGTTTTATATA+AGG | - | chr8.3:27691992-27692011 | None:intergenic | 20.0% |
!!! | TTTATAATGAATATAGTGGA+TGG | - | chr8.3:27692333-27692352 | None:intergenic | 20.0% |
!!! | TTTTGTTGATGTCAATTTTT+GGG | - | chr8.3:27692251-27692270 | None:intergenic | 20.0% |
!!! | TTTTTGTTGATGTCAATTTT+TGG | - | chr8.3:27692252-27692271 | None:intergenic | 20.0% |
! | AAATGAAAAATGCTCAACAA+TGG | - | chr8.3:27692585-27692604 | None:intergenic | 25.0% |
! | AAATGATTCTGTGATCATTA+TGG | + | chr8.3:27690848-27690867 | MS.gene89638:intron | 25.0% |
! | AAGGTGATTCAAATATCATA+TGG | - | chr8.3:27691973-27691992 | None:intergenic | 25.0% |
! | AGGTGCAAAATAATTTATAG+AGG | - | chr8.3:27691915-27691934 | None:intergenic | 25.0% |
! | CTCTCTAAACATTAAATAAG+TGG | - | chr8.3:27691717-27691736 | None:intergenic | 25.0% |
! | GTTAAGCTATAACTTATTGT+TGG | - | chr8.3:27692004-27692023 | None:intergenic | 25.0% |
! | TAAAATGGATCTAGTAAAAC+TGG | + | chr8.3:27690767-27690786 | MS.gene89638:intron | 25.0% |
! | TAGTTAGTTAGTTAGGATTT+GGG | + | chr8.3:27691088-27691107 | MS.gene89638:intron | 25.0% |
! | TATCAATAAATTTACAGGGA+TGG | + | chr8.3:27691279-27691298 | MS.gene89638:intron | 25.0% |
! | TTAGTTAGTTAGTTAGGATT+TGG | + | chr8.3:27691087-27691106 | MS.gene89638:intron | 25.0% |
! | TTTAAAGAACAAAAGCAGAA+AGG | - | chr8.3:27691313-27691332 | None:intergenic | 25.0% |
!! | TGAAATAGCTTTTCATTTTG+AGG | + | chr8.3:27692818-27692837 | MS.gene89638:intron | 25.0% |
!!! | CATTTTGATAGCATAACTTA+GGG | + | chr8.3:27692600-27692619 | MS.gene89638:intron | 25.0% |
!!! | GAATCATTACTTTTTGAACT+TGG | + | chr8.3:27690521-27690540 | MS.gene89638:intron | 25.0% |
!!! | GTATGTTTTCTGAAACAATA+CGG | + | chr8.3:27690805-27690824 | MS.gene89638:intron | 25.0% |
!!! | TATGTTTTCTGAAACAATAC+GGG | + | chr8.3:27690806-27690825 | MS.gene89638:intron | 25.0% |
!!! | TCATTTTGATAGCATAACTT+AGG | + | chr8.3:27692599-27692618 | MS.gene89638:intron | 25.0% |
AAATTAGGAATCAGTTTCCT+TGG | + | chr8.3:27691061-27691080 | MS.gene89638:intron | 30.0% | |
AACTAACTAACTAACTACCA+AGG | - | chr8.3:27691081-27691100 | None:intergenic | 30.0% | |
AAGTGTAGATTCAATTGAGT+CGG | + | chr8.3:27692182-27692201 | MS.gene89638:CDS | 30.0% | |
AATGTCATACAATGAGAACA+AGG | - | chr8.3:27692966-27692985 | None:intergenic | 30.0% | |
ACAGATTTCAACCAAAACAA+AGG | - | chr8.3:27691839-27691858 | None:intergenic | 30.0% | |
AGAGGGATTTCAATATGATA+AGG | - | chr8.3:27691656-27691675 | None:intergenic | 30.0% | |
ATGTCATACAATGAGAACAA+GGG | - | chr8.3:27692965-27692984 | None:intergenic | 30.0% | |
CAACGTATTTCGTATATGAT+CGG | + | chr8.3:27692448-27692467 | MS.gene89638:CDS | 30.0% | |
CAGATTTCAACCAAAACAAA+GGG | - | chr8.3:27691838-27691857 | None:intergenic | 30.0% | |
CAGTTAAACAACTGCTTTAT+GGG | + | chr8.3:27691473-27691492 | MS.gene89638:intron | 30.0% | |
CCTAGATTAAAATGTGATAG+AGG | + | chr8.3:27690632-27690651 | MS.gene89638:CDS | 30.0% | |
CTTATTCCAAGTCGTTTATA+TGG | - | chr8.3:27692090-27692109 | None:intergenic | 30.0% | |
GATCACTCACATTAATTCTT+GGG | - | chr8.3:27692068-27692087 | None:intergenic | 30.0% | |
GCTTATTTATATCCGTACTT+TGG | + | chr8.3:27693043-27693062 | MS.gene89638:intron | 30.0% | |
TAATCTAGGAGATGAAAAAC+TGG | - | chr8.3:27690621-27690640 | None:intergenic | 30.0% | |
TATGAATAACCATCGAGAAA+GGG | - | chr8.3:27691683-27691702 | None:intergenic | 30.0% | |
TCAGTTAAACAACTGCTTTA+TGG | + | chr8.3:27691472-27691491 | MS.gene89638:intron | 30.0% | |
TGAACTTGGAACTTTATGTA+AGG | + | chr8.3:27690535-27690554 | MS.gene89638:intron | 30.0% | |
TGATAGAGGACAAATTCAAT+TGG | + | chr8.3:27690646-27690665 | MS.gene89638:CDS | 30.0% | |
TGGTAGTTAGTTAGTTAGTT+AGG | + | chr8.3:27691081-27691100 | MS.gene89638:intron | 30.0% | |
TGTGAAAACTTAACATGAGA+GGG | - | chr8.3:27691623-27691642 | None:intergenic | 30.0% | |
TGTTTACTTGCATGTCTTAA+GGG | + | chr8.3:27691865-27691884 | MS.gene89638:intron | 30.0% | |
TTATGAATAACCATCGAGAA+AGG | - | chr8.3:27691684-27691703 | None:intergenic | 30.0% | |
TTCTTCGTCTTCATAATTGT+TGG | + | chr8.3:27690952-27690971 | MS.gene89638:intron | 30.0% | |
TTGTGAAAACTTAACATGAG+AGG | - | chr8.3:27691624-27691643 | None:intergenic | 30.0% | |
! | AGAAGAAAGTATAGGAGTAT+GGG | + | chr8.3:27691038-27691057 | MS.gene89638:intron | 30.0% |
! | TAGAAGAAAGTATAGGAGTA+TGG | + | chr8.3:27691037-27691056 | MS.gene89638:intron | 30.0% |
!! | AAGGTTCATGTTTTGTTGAA+TGG | + | chr8.3:27690554-27690573 | MS.gene89638:intron | 30.0% |
!! | CCTCTATCACATTTTAATCT+AGG | - | chr8.3:27690635-27690654 | None:intergenic | 30.0% |
!!! | GTGGTTAGTTTTTCTGTTTT+AGG | + | chr8.3:27691113-27691132 | MS.gene89638:intron | 30.0% |
AAAAGATACTCTCTTCACAC+TGG | - | chr8.3:27691250-27691269 | None:intergenic | 35.0% | |
AAACATCCATCAAACAAGGA+AGG | - | chr8.3:27691198-27691217 | None:intergenic | 35.0% | |
AAACCATAAGGAGTTCAAAG+AGG | + | chr8.3:27691378-27691397 | MS.gene89638:intron | 35.0% | |
AACCAAATGAGTAAGATCAC+AGG | - | chr8.3:27690915-27690934 | None:intergenic | 35.0% | |
AAGAAGAAATTCAAGCAGCT+AGG | + | chr8.3:27692124-27692143 | MS.gene89638:CDS | 35.0% | |
AATTACTGACACCATCAAGA+AGG | - | chr8.3:27693109-27693128 | None:intergenic | 35.0% | |
AGGATAAGAGCTTTGCTTTA+TGG | + | chr8.3:27692480-27692499 | MS.gene89638:CDS | 35.0% | |
AGTGATCCATATAAACGACT+TGG | + | chr8.3:27692081-27692100 | MS.gene89638:CDS | 35.0% | |
ATATGTCAGCATTTAACACG+AGG | + | chr8.3:27691789-27691808 | MS.gene89638:intron | 35.0% | |
ATGAATAACCATCGAGAAAG+GGG | - | chr8.3:27691682-27691701 | None:intergenic | 35.0% | |
CTGAGAAGCTGAACTAAAAT+AGG | + | chr8.3:27690978-27690997 | MS.gene89638:intron | 35.0% | |
CTGTGATCATTATGGATGTT+TGG | + | chr8.3:27690856-27690875 | MS.gene89638:intron | 35.0% | |
GACTCAATTGAATCTACACT+TGG | - | chr8.3:27692183-27692202 | None:intergenic | 35.0% | |
GATATGTCAAATGATTCTGC+TGG | + | chr8.3:27690698-27690717 | MS.gene89638:CDS | 35.0% | |
GGATAAGAGCTTTGCTTTAT+GGG | + | chr8.3:27692481-27692500 | MS.gene89638:CDS | 35.0% | |
GGATCACTCACATTAATTCT+TGG | - | chr8.3:27692069-27692088 | None:intergenic | 35.0% | |
GTCCTCTCTGTAACAATAAT+TGG | + | chr8.3:27691887-27691906 | MS.gene89638:intron | 35.0% | |
GTGTTTACTTGCATGTCTTA+AGG | + | chr8.3:27691864-27691883 | MS.gene89638:intron | 35.0% | |
TCCTGATTCAGAAATATGCA+GGG | + | chr8.3:27692151-27692170 | MS.gene89638:CDS | 35.0% | |
TGCAAAACATCCATCAAACA+AGG | - | chr8.3:27691202-27691221 | None:intergenic | 35.0% | |
TGCCAATTATTGTTACAGAG+AGG | - | chr8.3:27691892-27691911 | None:intergenic | 35.0% | |
TTCAACCAAAACAAAGGGTT+GGG | - | chr8.3:27691833-27691852 | None:intergenic | 35.0% | |
TTCCTGATTCAGAAATATGC+AGG | + | chr8.3:27692150-27692169 | MS.gene89638:CDS | 35.0% | |
TTCCTGTGATCTTACTCATT+TGG | + | chr8.3:27690910-27690929 | MS.gene89638:intron | 35.0% | |
TTTCAACCAAAACAAAGGGT+TGG | - | chr8.3:27691834-27691853 | None:intergenic | 35.0% | |
TTTCCTCTTTGAACTCCTTA+TGG | - | chr8.3:27691384-27691403 | None:intergenic | 35.0% | |
! | ATTTATCTTTTCGTGGCTGT+TGG | + | chr8.3:27693080-27693099 | MS.gene89638:CDS | 35.0% |
! | GTATAGGAGTATGGGAAATT+AGG | + | chr8.3:27691046-27691065 | MS.gene89638:intron | 35.0% |
! | TAAACGACTTGGAATAAGCA+AGG | + | chr8.3:27692092-27692111 | MS.gene89638:CDS | 35.0% |
! | TCACTGGCATTTTTGTTACT+TGG | + | chr8.3:27692357-27692376 | MS.gene89638:CDS | 35.0% |
! | TTTATCTTTTCGTGGCTGTT+GGG | + | chr8.3:27693081-27693100 | MS.gene89638:CDS | 35.0% |
!! | TTGGAGCATTTATCTTTTCG+TGG | + | chr8.3:27693073-27693092 | MS.gene89638:CDS | 35.0% |
!!! | CTATTTTAGTTCAGCTTCTC+AGG | - | chr8.3:27690980-27690999 | None:intergenic | 35.0% |
!!! | TTTTTTTTTCCTCGGCATGT+GGG | + | chr8.3:27691430-27691449 | MS.gene89638:intron | 35.0% |
!!! | TTTTTTTTTTCCTCGGCATG+TGG | + | chr8.3:27691429-27691448 | MS.gene89638:intron | 35.0% |
AACAGCTGCATTTGTAGCAA+AGG | - | chr8.3:27692043-27692062 | None:intergenic | 40.0% | |
AGTGCTATGGATGCTTCATT+TGG | + | chr8.3:27690674-27690693 | MS.gene89638:CDS | 40.0% | |
CCTCCCATTCCTATAATCAA+GGG | + | chr8.3:27693129-27693148 | MS.gene89638:CDS | 40.0% | |
CTGTGCACGATAAGGATTAA+AGG | - | chr8.3:27691154-27691173 | None:intergenic | 40.0% | |
CTTTAATCCTTATCGTGCAC+AGG | + | chr8.3:27691152-27691171 | MS.gene89638:intron | 40.0% | |
GATATTGCAACCTGAAGTGT+TGG | - | chr8.3:27692417-27692436 | None:intergenic | 40.0% | |
GATTCATGTGAAACACGAGA+GGG | - | chr8.3:27691570-27691589 | None:intergenic | 40.0% | |
GGTCCCTTGATTATAGGAAT+GGG | - | chr8.3:27693135-27693154 | None:intergenic | 40.0% | |
GTCTAGCAGACAATATCATC+AGG | - | chr8.3:27692563-27692582 | None:intergenic | 40.0% | |
GTTAGTTAGGATTTGGGTAG+TGG | + | chr8.3:27691094-27691113 | MS.gene89638:intron | 40.0% | |
TCCTATAATCAAGGGACCAA+GGG | + | chr8.3:27693137-27693156 | MS.gene89638:CDS | 40.0% | |
TCCTCCCATTCCTATAATCA+AGG | + | chr8.3:27693128-27693147 | MS.gene89638:CDS | 40.0% | |
TGATTCATGTGAAACACGAG+AGG | - | chr8.3:27691571-27691590 | None:intergenic | 40.0% | |
TGGCTGGTAAACGTATACAA+AGG | + | chr8.3:27690464-27690483 | MS.gene89638:CDS | 40.0% | |
TGGTCCCTTGATTATAGGAA+TGG | - | chr8.3:27693136-27693155 | None:intergenic | 40.0% | |
TTCCTATAATCAAGGGACCA+AGG | + | chr8.3:27693136-27693155 | MS.gene89638:CDS | 40.0% | |
TTCTGCAAATTGACAGGGTA+AGG | - | chr8.3:27690598-27690617 | None:intergenic | 40.0% | |
! | AGACTTCCTTCCTTGTTTGA+TGG | + | chr8.3:27691189-27691208 | MS.gene89638:intron | 40.0% |
! | ATGATTGTATCTGGGTTGAG+TGG | + | chr8.3:27690367-27690386 | MS.gene89638:CDS | 40.0% |
! | GGTTTTTCTCTCAGCTTCTT+AGG | + | chr8.3:27693016-27693035 | MS.gene89638:intron | 40.0% |
! | TATATCCGTACTTTGGTGCA+GGG | + | chr8.3:27693050-27693069 | MS.gene89638:intron | 40.0% |
! | TTATATCCGTACTTTGGTGC+AGG | + | chr8.3:27693049-27693068 | MS.gene89638:intron | 40.0% |
!! | AACTGGTTCTGCAAATTGAC+AGG | - | chr8.3:27690604-27690623 | None:intergenic | 40.0% |
!! | ACTGGTTCTGCAAATTGACA+GGG | - | chr8.3:27690603-27690622 | None:intergenic | 40.0% |
!! | ATGGATGTTTGGTTCTCTTG+TGG | + | chr8.3:27690867-27690886 | MS.gene89638:intron | 40.0% |
!! | TCAATTGGTCAGAAGTGCTA+TGG | + | chr8.3:27690661-27690680 | MS.gene89638:CDS | 40.0% |
!!! | TTTTTTTTCCTCGGCATGTG+GGG | + | chr8.3:27691431-27691450 | MS.gene89638:intron | 40.0% |
AAAATGCCATGACCCGAACA+CGG | - | chr8.3:27690441-27690460 | None:intergenic | 45.0% | |
ATGAGAGGGTCTCTGCTTAA+GGG | - | chr8.3:27691609-27691628 | None:intergenic | 45.0% | |
CCCTTGATTATAGGAATGGG+AGG | - | chr8.3:27693132-27693151 | None:intergenic | 45.0% | |
GGGCTTGTAATGCATCTCTT+GGG | - | chr8.3:27691342-27691361 | None:intergenic | 45.0% | |
TAGGCATACCTTTCCACACT+GGG | - | chr8.3:27690499-27690518 | None:intergenic | 45.0% | |
TATATGATCGGCTGAAGAGC+AGG | + | chr8.3:27692460-27692479 | MS.gene89638:CDS | 45.0% | |
TATGGGTGACAGACAGATGT+TGG | + | chr8.3:27691490-27691509 | MS.gene89638:intron | 45.0% | |
TTAGGCATACCTTTCCACAC+TGG | - | chr8.3:27690500-27690519 | None:intergenic | 45.0% | |
TTCCTCGGTTGGAAAGAGAA+CGG | - | chr8.3:27692391-27692410 | None:intergenic | 45.0% | |
TTCTCTTTCCAACCGAGGAA+GGG | + | chr8.3:27692391-27692410 | MS.gene89638:CDS | 45.0% | |
! | CAATCAATCCCGATTCGTTC+AGG | + | chr8.3:27692284-27692303 | MS.gene89638:CDS | 45.0% |
! | GCCCTGCATATTTCTGAATC+AGG | - | chr8.3:27692155-27692174 | None:intergenic | 45.0% |
!!! | AAATGATTTTTTTTTTTAAA+TGG | + | chr8.3:27692845-27692864 | MS.gene89638:intron | 5.0% |
AAGGACAGTGTTTCCCAGTG+TGG | + | chr8.3:27690483-27690502 | MS.gene89638:CDS | 50.0% | |
AGATGCATTACAAGCCCGAG+AGG | + | chr8.3:27691345-27691364 | MS.gene89638:intron | 50.0% | |
AGGCAACGAGGAGGTAATTG+GGG | - | chr8.3:27690409-27690428 | None:intergenic | 50.0% | |
CAGACTTCCTGTGCACGATA+AGG | - | chr8.3:27691162-27691181 | None:intergenic | 50.0% | |
CAGTGTTTCCCAGTGTGGAA+AGG | + | chr8.3:27690488-27690507 | MS.gene89638:CDS | 50.0% | |
CATCGAGAAAGGGGAAGAGA+GGG | - | chr8.3:27691673-27691692 | None:intergenic | 50.0% | |
CATGAGAGGGTCTCTGCTTA+AGG | - | chr8.3:27691610-27691629 | None:intergenic | 50.0% | |
CCAAAACAAAGGGTTGGGAG+TGG | - | chr8.3:27691828-27691847 | None:intergenic | 50.0% | |
CGGGCTTGTAATGCATCTCT+TGG | - | chr8.3:27691343-27691362 | None:intergenic | 50.0% | |
CTCTGACAGCCTGAACGAAT+CGG | - | chr8.3:27692296-27692315 | None:intergenic | 50.0% | |
GAGGCAACGAGGAGGTAATT+GGG | - | chr8.3:27690410-27690429 | None:intergenic | 50.0% | |
GATGCATTACAAGCCCGAGA+GGG | + | chr8.3:27691346-27691365 | MS.gene89638:intron | 50.0% | |
GCCCTTGGTCCCTTGATTAT+AGG | - | chr8.3:27693141-27693160 | None:intergenic | 50.0% | |
GCTGTTGGGAACCTTCTTGA+TGG | + | chr8.3:27693095-27693114 | MS.gene89638:CDS | 50.0% | |
GGGTAGGTGGCTAAACCATA+AGG | + | chr8.3:27691366-27691385 | MS.gene89638:intron | 50.0% | |
GTGATCACCTCAAATGCCCT+TGG | - | chr8.3:27693156-27693175 | None:intergenic | 50.0% | |
GTTCTCTTTCCAACCGAGGA+AGG | + | chr8.3:27692390-27692409 | MS.gene89638:CDS | 50.0% | |
TCCAACCCTGCACCAAAGTA+CGG | - | chr8.3:27693058-27693077 | None:intergenic | 50.0% | |
TCTGACAGCCTGAACGAATC+GGG | - | chr8.3:27692295-27692314 | None:intergenic | 50.0% | |
! | GTCATGGCATTTTCTGTGGC+TGG | + | chr8.3:27690448-27690467 | MS.gene89638:CDS | 50.0% |
! | TCGGGTCATGGCATTTTCTG+TGG | + | chr8.3:27690444-27690463 | MS.gene89638:CDS | 50.0% |
!! | CCACTCCCAACCCTTTGTTT+TGG | + | chr8.3:27691825-27691844 | MS.gene89638:intron | 50.0% |
ACGAGAGGGTTTCTGCCCAA+GGG | - | chr8.3:27691556-27691575 | None:intergenic | 55.0% | |
AGAGGGTCTCTGCTTAAGGG+CGG | - | chr8.3:27691606-27691625 | None:intergenic | 55.0% | |
AGGGTTGGGAGTGGCACAAA+TGG | - | chr8.3:27691819-27691838 | None:intergenic | 55.0% | |
AGGGTTTCTGCCCAAGGGTA+GGG | - | chr8.3:27691551-27691570 | None:intergenic | 55.0% | |
CATTACAAGCCCGAGAGGGT+AGG | + | chr8.3:27691350-27691369 | MS.gene89638:intron | 55.0% | |
CCATCGAGAAAGGGGAAGAG+AGG | - | chr8.3:27691674-27691693 | None:intergenic | 55.0% | |
CCTCTCTTCCCCTTTCTCGA+TGG | + | chr8.3:27691671-27691690 | MS.gene89638:intron | 55.0% | |
CGAGGCAACGAGGAGGTAAT+TGG | - | chr8.3:27690411-27690430 | None:intergenic | 55.0% | |
CGATTCGTTCAGGCTGTCAG+AGG | + | chr8.3:27692294-27692313 | MS.gene89638:CDS | 55.0% | |
GACCGTTCTCTTTCCAACCG+AGG | + | chr8.3:27692386-27692405 | MS.gene89638:CDS | 55.0% | |
GGCAACGAGGAGGTAATTGG+GGG | - | chr8.3:27690408-27690427 | None:intergenic | 55.0% | |
GGTTTAGCCACCTACCCTCT+CGG | - | chr8.3:27691363-27691382 | None:intergenic | 55.0% | |
GTTTAGCCACCTACCCTCTC+GGG | - | chr8.3:27691362-27691381 | None:intergenic | 55.0% | |
TTCCCGTCTTCCCTACCCTT+GGG | + | chr8.3:27691538-27691557 | MS.gene89638:intron | 55.0% | |
TTTCCCGTCTTCCCTACCCT+TGG | + | chr8.3:27691537-27691556 | MS.gene89638:intron | 55.0% | |
! | TCCGTACTTTGGTGCAGGGT+TGG | + | chr8.3:27693054-27693073 | MS.gene89638:intron | 55.0% |
! | TTTTCCTCGGCATGTGGGGT+GGG | + | chr8.3:27691435-27691454 | MS.gene89638:intron | 55.0% |
! | TTTTTCCTCGGCATGTGGGG+TGG | + | chr8.3:27691434-27691453 | MS.gene89638:intron | 55.0% |
!! | CAAGGGACCAAGGGCATTTG+AGG | + | chr8.3:27693146-27693165 | MS.gene89638:CDS | 55.0% |
!! | CTGAAGTGTTGGCCCTTCCT+CGG | - | chr8.3:27692406-27692425 | None:intergenic | 55.0% |
AGGGTCTCTGCTTAAGGGCG+GGG | - | chr8.3:27691604-27691623 | None:intergenic | 60.0% | |
ATCACGCCGTGTTCGGGTCA+TGG | + | chr8.3:27690432-27690451 | MS.gene89638:CDS | 60.0% | |
CACGAGAGGGTTTCTGCCCA+AGG | - | chr8.3:27691557-27691576 | None:intergenic | 60.0% | |
CCTCGAATCACGCCGTGTTC+GGG | + | chr8.3:27690426-27690445 | MS.gene89638:CDS | 60.0% | |
CGAGGAAGGGCCAACACTTC+AGG | + | chr8.3:27692404-27692423 | MS.gene89638:CDS | 60.0% | |
CGTGATTCGAGGCAACGAGG+AGG | - | chr8.3:27690418-27690437 | None:intergenic | 60.0% | |
CTGCCCAAGGGTAGGGAAGA+CGG | - | chr8.3:27691544-27691563 | None:intergenic | 60.0% | |
CTGCTTAAGGGCGGGGAAGA+AGG | - | chr8.3:27691597-27691616 | None:intergenic | 60.0% | |
GAGGGTCTCTGCTTAAGGGC+GGG | - | chr8.3:27691605-27691624 | None:intergenic | 60.0% | |
GAGGGTTTCTGCCCAAGGGT+AGG | - | chr8.3:27691552-27691571 | None:intergenic | 60.0% | |
GCCTCGAATCACGCCGTGTT+CGG | + | chr8.3:27690425-27690444 | MS.gene89638:CDS | 60.0% | |
TACAAGCCCGAGAGGGTAGG+TGG | + | chr8.3:27691353-27691372 | MS.gene89638:intron | 60.0% | |
TGCCCAAGGGTAGGGAAGAC+GGG | - | chr8.3:27691543-27691562 | None:intergenic | 60.0% | |
TTTCCTCGGCATGTGGGGTG+GGG | + | chr8.3:27691436-27691455 | MS.gene89638:intron | 60.0% | |
!! | AGTGTTGGCCCTTCCTCGGT+TGG | - | chr8.3:27692402-27692421 | None:intergenic | 60.0% |
CCCGAACACGGCGTGATTCG+AGG | - | chr8.3:27690429-27690448 | None:intergenic | 65.0% | |
CGGCGTGATTCGAGGCAACG+AGG | - | chr8.3:27690421-27690440 | None:intergenic | 65.0% | |
TTCCTCGGCATGTGGGGTGG+GGG | + | chr8.3:27691437-27691456 | MS.gene89638:intron | 65.0% | |
TCCTCGGCATGTGGGGTGGG+GGG | + | chr8.3:27691438-27691457 | MS.gene89638:intron | 70.0% | |
CCTCGGCATGTGGGGTGGGG+GGG | + | chr8.3:27691439-27691458 | MS.gene89638:intron | 75.0% | |
! | CCCCCCCACCCCACATGCCG+AGG | - | chr8.3:27691442-27691461 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 27690367 | 27693227 | 27690367 | ID=MS.gene89638 |
chr8.3 | mRNA | 27690367 | 27693227 | 27690367 | ID=MS.gene89638.t1;Parent=MS.gene89638 |
chr8.3 | exon | 27690367 | 27690509 | 27690367 | ID=MS.gene89638.t1.exon1;Parent=MS.gene89638.t1 |
chr8.3 | CDS | 27690367 | 27690509 | 27690367 | ID=cds.MS.gene89638.t1;Parent=MS.gene89638.t1 |
chr8.3 | exon | 27690616 | 27690719 | 27690616 | ID=MS.gene89638.t1.exon2;Parent=MS.gene89638.t1 |
chr8.3 | CDS | 27690616 | 27690719 | 27690616 | ID=cds.MS.gene89638.t1;Parent=MS.gene89638.t1 |
chr8.3 | exon | 27692058 | 27692502 | 27692058 | ID=MS.gene89638.t1.exon3;Parent=MS.gene89638.t1 |
chr8.3 | CDS | 27692058 | 27692502 | 27692058 | ID=cds.MS.gene89638.t1;Parent=MS.gene89638.t1 |
chr8.3 | exon | 27693071 | 27693227 | 27693071 | ID=MS.gene89638.t1.exon4;Parent=MS.gene89638.t1 |
chr8.3 | CDS | 27693071 | 27693227 | 27693071 | ID=cds.MS.gene89638.t1;Parent=MS.gene89638.t1 |
Gene Sequence |
Protein sequence |