AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89638


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89638.t1 MTR_8g076220 96.809 282 9 0 1 282 1 282 0.0 553
MS.gene89638.t1 MTR_4g112540 37.327 217 128 4 67 281 40 250 6.84e-45 152
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89638.t1 AT3G51140 62.055 253 89 3 30 281 31 277 1.27e-110 321
MS.gene89638.t1 AT3G51140 58.621 203 79 2 30 231 31 229 1.67e-80 243
MS.gene89638.t1 AT5G23040 38.739 222 124 5 64 281 44 257 5.83e-45 153
MS.gene89638.t1 AT5G23040 38.739 222 124 5 64 281 44 257 5.83e-45 153

Find 66 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATAACAATGATTGTATC+TGG 0.187129 8.3:+27690358 None:intergenic
CGAGGCAACGAGGAGGTAAT+TGG 0.227784 8.3:-27690408 None:intergenic
AGGATAAGAGCTTTGCTTTA+TGG 0.229239 8.3:+27692480 MS.gene89638:CDS
CTTATTCCAAGTCGTTTATA+TGG 0.238305 8.3:-27692087 None:intergenic
GCCCTTGGTCCCTTGATTAT+AGG 0.265287 8.3:-27693138 None:intergenic
GCCTCGAATCACGCCGTGTT+CGG 0.266223 8.3:+27690425 MS.gene89638:CDS
GGATAAGAGCTTTGCTTTAT+GGG 0.286176 8.3:+27692481 MS.gene89638:CDS
GGATCACTCACATTAATTCT+TGG 0.315349 8.3:-27692066 None:intergenic
CGAGGAAGGGCCAACACTTC+AGG 0.348949 8.3:+27692404 MS.gene89638:CDS
CCTCGAATCACGCCGTGTTC+GGG 0.353082 8.3:+27690426 MS.gene89638:CDS
GCCCTGCATATTTCTGAATC+AGG 0.356185 8.3:-27692152 None:intergenic
GAGGCAACGAGGAGGTAATT+GGG 0.389953 8.3:-27690407 None:intergenic
GCTGTTGGGAACCTTCTTGA+TGG 0.390968 8.3:+27693095 MS.gene89638:CDS
GATCACTCACATTAATTCTT+GGG 0.397690 8.3:-27692065 None:intergenic
CAATCAATCCCGATTCGTTC+AGG 0.407889 8.3:+27692284 MS.gene89638:CDS
CTCTGACAGCCTGAACGAAT+CGG 0.408522 8.3:-27692293 None:intergenic
CAAGGGACCAAGGGCATTTG+AGG 0.437968 8.3:+27693146 MS.gene89638:CDS
CTTTAGCCTTCATATAAGAT+AGG 0.451503 8.3:-27693214 None:intergenic
TCCTCCCATTCCTATAATCA+AGG 0.453208 8.3:+27693128 MS.gene89638:CDS
CCCGAACACGGCGTGATTCG+AGG 0.471269 8.3:-27690426 None:intergenic
TGGTCCCTTGATTATAGGAA+TGG 0.471280 8.3:-27693133 None:intergenic
TCTGACAGCCTGAACGAATC+GGG 0.472429 8.3:-27692292 None:intergenic
CTGAAGTGTTGGCCCTTCCT+CGG 0.475487 8.3:-27692403 None:intergenic
AGTGCTATGGATGCTTCATT+TGG 0.476376 8.3:+27690674 MS.gene89638:CDS
ATCACGCCGTGTTCGGGTCA+TGG 0.476941 8.3:+27690432 MS.gene89638:CDS
CATCGACCTATCTTATATGA+AGG 0.484004 8.3:+27693208 MS.gene89638:CDS
AGTGTTGGCCCTTCCTCGGT+TGG 0.487936 8.3:-27692399 None:intergenic
TTCCTGATTCAGAAATATGC+AGG 0.491805 8.3:+27692150 MS.gene89638:CDS
CCTAGATTAAAATGTGATAG+AGG 0.503788 8.3:+27690632 MS.gene89638:CDS
TGATAGAGGACAAATTCAAT+TGG 0.504383 8.3:+27690646 MS.gene89638:CDS
GGTCCCTTGATTATAGGAAT+GGG 0.504384 8.3:-27693132 None:intergenic
TATATGATCGGCTGAAGAGC+AGG 0.515820 8.3:+27692460 MS.gene89638:CDS
TTATAACAATGATTGTATCT+GGG 0.516139 8.3:+27690359 None:intergenic
GACTCAATTGAATCTACACT+TGG 0.523228 8.3:-27692180 None:intergenic
TCAATTGGTCAGAAGTGCTA+TGG 0.523550 8.3:+27690661 MS.gene89638:CDS
TTTATAATGAATATAGTGGA+TGG 0.536659 8.3:-27692330 None:intergenic
TAGGCATACCTTTCCACACT+GGG 0.543225 8.3:-27690496 None:intergenic
GATATTGCAACCTGAAGTGT+TGG 0.546273 8.3:-27692414 None:intergenic
GTTCTCTTTCCAACCGAGGA+AGG 0.550887 8.3:+27692390 MS.gene89638:CDS
TCCTATAATCAAGGGACCAA+GGG 0.560682 8.3:+27693137 MS.gene89638:CDS
GTGATCACCTCAAATGCCCT+TGG 0.562552 8.3:-27693153 None:intergenic
AGGCAACGAGGAGGTAATTG+GGG 0.569451 8.3:-27690406 None:intergenic
CAACGTATTTCGTATATGAT+CGG 0.574288 8.3:+27692448 MS.gene89638:CDS
AGTGATCCATATAAACGACT+TGG 0.585347 8.3:+27692081 MS.gene89638:CDS
TTCTCTTTCCAACCGAGGAA+GGG 0.587448 8.3:+27692391 MS.gene89638:CDS
CCTCCCATTCCTATAATCAA+GGG 0.591184 8.3:+27693129 MS.gene89638:CDS
CCCTTGATTATAGGAATGGG+AGG 0.596769 8.3:-27693129 None:intergenic
CAGTGTTTCCCAGTGTGGAA+AGG 0.601488 8.3:+27690488 MS.gene89638:CDS
TTCCTATAATCAAGGGACCA+AGG 0.602791 8.3:+27693136 MS.gene89638:CDS
AAGAAGAAATTCAAGCAGCT+AGG 0.603879 8.3:+27692124 MS.gene89638:CDS
CGATTCGTTCAGGCTGTCAG+AGG 0.606356 8.3:+27692294 MS.gene89638:CDS
AAGTGTAGATTCAATTGAGT+CGG 0.607184 8.3:+27692182 MS.gene89638:CDS
TAAACGACTTGGAATAAGCA+AGG 0.614927 8.3:+27692092 MS.gene89638:CDS
AATTACTGACACCATCAAGA+AGG 0.623704 8.3:-27693106 None:intergenic
AAGGACAGTGTTTCCCAGTG+TGG 0.631476 8.3:+27690483 MS.gene89638:CDS
GACCGTTCTCTTTCCAACCG+AGG 0.637405 8.3:+27692386 MS.gene89638:CDS
TTAGGCATACCTTTCCACAC+TGG 0.639996 8.3:-27690497 None:intergenic
TCCTGATTCAGAAATATGCA+GGG 0.647834 8.3:+27692151 MS.gene89638:CDS
TTCCTCGGTTGGAAAGAGAA+CGG 0.656823 8.3:-27692388 None:intergenic
GATATGTCAAATGATTCTGC+TGG 0.657645 8.3:+27690698 MS.gene89638:CDS
AAAATGCCATGACCCGAACA+CGG 0.665683 8.3:-27690438 None:intergenic
ATGATTGTATCTGGGTTGAG+TGG 0.684151 8.3:+27690367 MS.gene89638:CDS
GGCAACGAGGAGGTAATTGG+GGG 0.687219 8.3:-27690405 None:intergenic
TGGCTGGTAAACGTATACAA+AGG 0.690545 8.3:+27690464 MS.gene89638:CDS
CGGCGTGATTCGAGGCAACG+AGG 0.707572 8.3:-27690418 None:intergenic
CGTGATTCGAGGCAACGAGG+AGG 0.732059 8.3:-27690415 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATTTATAGATCATA+TGG - chr8.3:27691941-27691960 None:intergenic 10.0%
!! ATATTTCATGATACATAAAA+TGG + chr8.3:27690752-27690771 MS.gene89638:intron 15.0%
!! GTAAATTTATTGATATGAAA+AGG - chr8.3:27691274-27691293 None:intergenic 15.0%
!! TCAAAAAAATTCAAAACAAA+CGG + chr8.3:27692938-27692957 MS.gene89638:intron 15.0%
!! TTCATATCAATAAATTTACA+GGG + chr8.3:27691275-27691294 MS.gene89638:intron 15.0%
!! TTTCATATCAATAAATTTAC+AGG + chr8.3:27691274-27691293 MS.gene89638:intron 15.0%
!!! AAAAAAAATAGATTTTGAGT+TGG + chr8.3:27692643-27692662 MS.gene89638:intron 15.0%
!!! AGTTTTTATAATGAATATAG+TGG - chr8.3:27692337-27692356 None:intergenic 15.0%
!!! GATAACATATGTTTTATTAT+GGG + chr8.3:27693182-27693201 MS.gene89638:CDS 15.0%
!!! GTTTAGAAAAAAATAGATTT+TGG + chr8.3:27692785-27692804 MS.gene89638:intron 15.0%
!!! TAGTTTTTTTTTTTTTTCCT+CGG + chr8.3:27691422-27691441 MS.gene89638:intron 15.0%
!!! TCTATTTTTTTCTAAACATA+AGG - chr8.3:27692782-27692801 None:intergenic 15.0%
!!! TGATAACATATGTTTTATTA+TGG + chr8.3:27693181-27693200 MS.gene89638:CDS 15.0%
!! ATTCAAATATCATATGGATA+AGG - chr8.3:27691967-27691986 None:intergenic 20.0%
!! ATTCATTATAAAAACTTCAC+TGG + chr8.3:27692341-27692360 MS.gene89638:CDS 20.0%
!! ATTTATAGATCATATGGATA+AGG - chr8.3:27691935-27691954 None:intergenic 20.0%
!! CAAAAAAATTCAAAACAAAC+GGG + chr8.3:27692939-27692958 MS.gene89638:intron 20.0%
!! TCAAAAAGTAATGATTCATT+AGG - chr8.3:27690518-27690537 None:intergenic 20.0%
!! TCTCTAAACATTAAATAAGT+GGG - chr8.3:27691716-27691735 None:intergenic 20.0%
!! TGACATCAACAAAAAAATTA+GGG + chr8.3:27692257-27692276 MS.gene89638:CDS 20.0%
!! TTGACATCAACAAAAAAATT+AGG + chr8.3:27692256-27692275 MS.gene89638:CDS 20.0%
!!! ATATCATTTTGATGCATTTA+TGG + chr8.3:27692995-27693014 MS.gene89638:intron 20.0%
!!! ATTATTGTAGAAGAAAGTAT+AGG + chr8.3:27691030-27691049 MS.gene89638:intron 20.0%
!!! CTTATTGTTGGTTTTATATA+AGG - chr8.3:27691992-27692011 None:intergenic 20.0%
!!! TTTATAATGAATATAGTGGA+TGG - chr8.3:27692333-27692352 None:intergenic 20.0%
!!! TTTTGTTGATGTCAATTTTT+GGG - chr8.3:27692251-27692270 None:intergenic 20.0%
!!! TTTTTGTTGATGTCAATTTT+TGG - chr8.3:27692252-27692271 None:intergenic 20.0%
! AAATGAAAAATGCTCAACAA+TGG - chr8.3:27692585-27692604 None:intergenic 25.0%
! AAATGATTCTGTGATCATTA+TGG + chr8.3:27690848-27690867 MS.gene89638:intron 25.0%
! AAGGTGATTCAAATATCATA+TGG - chr8.3:27691973-27691992 None:intergenic 25.0%
! AGGTGCAAAATAATTTATAG+AGG - chr8.3:27691915-27691934 None:intergenic 25.0%
! CTCTCTAAACATTAAATAAG+TGG - chr8.3:27691717-27691736 None:intergenic 25.0%
! GTTAAGCTATAACTTATTGT+TGG - chr8.3:27692004-27692023 None:intergenic 25.0%
! TAAAATGGATCTAGTAAAAC+TGG + chr8.3:27690767-27690786 MS.gene89638:intron 25.0%
! TAGTTAGTTAGTTAGGATTT+GGG + chr8.3:27691088-27691107 MS.gene89638:intron 25.0%
! TATCAATAAATTTACAGGGA+TGG + chr8.3:27691279-27691298 MS.gene89638:intron 25.0%
! TTAGTTAGTTAGTTAGGATT+TGG + chr8.3:27691087-27691106 MS.gene89638:intron 25.0%
! TTTAAAGAACAAAAGCAGAA+AGG - chr8.3:27691313-27691332 None:intergenic 25.0%
!! TGAAATAGCTTTTCATTTTG+AGG + chr8.3:27692818-27692837 MS.gene89638:intron 25.0%
!!! CATTTTGATAGCATAACTTA+GGG + chr8.3:27692600-27692619 MS.gene89638:intron 25.0%
!!! GAATCATTACTTTTTGAACT+TGG + chr8.3:27690521-27690540 MS.gene89638:intron 25.0%
!!! GTATGTTTTCTGAAACAATA+CGG + chr8.3:27690805-27690824 MS.gene89638:intron 25.0%
!!! TATGTTTTCTGAAACAATAC+GGG + chr8.3:27690806-27690825 MS.gene89638:intron 25.0%
!!! TCATTTTGATAGCATAACTT+AGG + chr8.3:27692599-27692618 MS.gene89638:intron 25.0%
AAATTAGGAATCAGTTTCCT+TGG + chr8.3:27691061-27691080 MS.gene89638:intron 30.0%
AACTAACTAACTAACTACCA+AGG - chr8.3:27691081-27691100 None:intergenic 30.0%
AAGTGTAGATTCAATTGAGT+CGG + chr8.3:27692182-27692201 MS.gene89638:CDS 30.0%
AATGTCATACAATGAGAACA+AGG - chr8.3:27692966-27692985 None:intergenic 30.0%
ACAGATTTCAACCAAAACAA+AGG - chr8.3:27691839-27691858 None:intergenic 30.0%
AGAGGGATTTCAATATGATA+AGG - chr8.3:27691656-27691675 None:intergenic 30.0%
ATGTCATACAATGAGAACAA+GGG - chr8.3:27692965-27692984 None:intergenic 30.0%
CAACGTATTTCGTATATGAT+CGG + chr8.3:27692448-27692467 MS.gene89638:CDS 30.0%
CAGATTTCAACCAAAACAAA+GGG - chr8.3:27691838-27691857 None:intergenic 30.0%
CAGTTAAACAACTGCTTTAT+GGG + chr8.3:27691473-27691492 MS.gene89638:intron 30.0%
CCTAGATTAAAATGTGATAG+AGG + chr8.3:27690632-27690651 MS.gene89638:CDS 30.0%
CTTATTCCAAGTCGTTTATA+TGG - chr8.3:27692090-27692109 None:intergenic 30.0%
GATCACTCACATTAATTCTT+GGG - chr8.3:27692068-27692087 None:intergenic 30.0%
GCTTATTTATATCCGTACTT+TGG + chr8.3:27693043-27693062 MS.gene89638:intron 30.0%
TAATCTAGGAGATGAAAAAC+TGG - chr8.3:27690621-27690640 None:intergenic 30.0%
TATGAATAACCATCGAGAAA+GGG - chr8.3:27691683-27691702 None:intergenic 30.0%
TCAGTTAAACAACTGCTTTA+TGG + chr8.3:27691472-27691491 MS.gene89638:intron 30.0%
TGAACTTGGAACTTTATGTA+AGG + chr8.3:27690535-27690554 MS.gene89638:intron 30.0%
TGATAGAGGACAAATTCAAT+TGG + chr8.3:27690646-27690665 MS.gene89638:CDS 30.0%
TGGTAGTTAGTTAGTTAGTT+AGG + chr8.3:27691081-27691100 MS.gene89638:intron 30.0%
TGTGAAAACTTAACATGAGA+GGG - chr8.3:27691623-27691642 None:intergenic 30.0%
TGTTTACTTGCATGTCTTAA+GGG + chr8.3:27691865-27691884 MS.gene89638:intron 30.0%
TTATGAATAACCATCGAGAA+AGG - chr8.3:27691684-27691703 None:intergenic 30.0%
TTCTTCGTCTTCATAATTGT+TGG + chr8.3:27690952-27690971 MS.gene89638:intron 30.0%
TTGTGAAAACTTAACATGAG+AGG - chr8.3:27691624-27691643 None:intergenic 30.0%
! AGAAGAAAGTATAGGAGTAT+GGG + chr8.3:27691038-27691057 MS.gene89638:intron 30.0%
! TAGAAGAAAGTATAGGAGTA+TGG + chr8.3:27691037-27691056 MS.gene89638:intron 30.0%
!! AAGGTTCATGTTTTGTTGAA+TGG + chr8.3:27690554-27690573 MS.gene89638:intron 30.0%
!! CCTCTATCACATTTTAATCT+AGG - chr8.3:27690635-27690654 None:intergenic 30.0%
!!! GTGGTTAGTTTTTCTGTTTT+AGG + chr8.3:27691113-27691132 MS.gene89638:intron 30.0%
AAAAGATACTCTCTTCACAC+TGG - chr8.3:27691250-27691269 None:intergenic 35.0%
AAACATCCATCAAACAAGGA+AGG - chr8.3:27691198-27691217 None:intergenic 35.0%
AAACCATAAGGAGTTCAAAG+AGG + chr8.3:27691378-27691397 MS.gene89638:intron 35.0%
AACCAAATGAGTAAGATCAC+AGG - chr8.3:27690915-27690934 None:intergenic 35.0%
AAGAAGAAATTCAAGCAGCT+AGG + chr8.3:27692124-27692143 MS.gene89638:CDS 35.0%
AATTACTGACACCATCAAGA+AGG - chr8.3:27693109-27693128 None:intergenic 35.0%
AGGATAAGAGCTTTGCTTTA+TGG + chr8.3:27692480-27692499 MS.gene89638:CDS 35.0%
AGTGATCCATATAAACGACT+TGG + chr8.3:27692081-27692100 MS.gene89638:CDS 35.0%
ATATGTCAGCATTTAACACG+AGG + chr8.3:27691789-27691808 MS.gene89638:intron 35.0%
ATGAATAACCATCGAGAAAG+GGG - chr8.3:27691682-27691701 None:intergenic 35.0%
CTGAGAAGCTGAACTAAAAT+AGG + chr8.3:27690978-27690997 MS.gene89638:intron 35.0%
CTGTGATCATTATGGATGTT+TGG + chr8.3:27690856-27690875 MS.gene89638:intron 35.0%
GACTCAATTGAATCTACACT+TGG - chr8.3:27692183-27692202 None:intergenic 35.0%
GATATGTCAAATGATTCTGC+TGG + chr8.3:27690698-27690717 MS.gene89638:CDS 35.0%
GGATAAGAGCTTTGCTTTAT+GGG + chr8.3:27692481-27692500 MS.gene89638:CDS 35.0%
GGATCACTCACATTAATTCT+TGG - chr8.3:27692069-27692088 None:intergenic 35.0%
GTCCTCTCTGTAACAATAAT+TGG + chr8.3:27691887-27691906 MS.gene89638:intron 35.0%
GTGTTTACTTGCATGTCTTA+AGG + chr8.3:27691864-27691883 MS.gene89638:intron 35.0%
TCCTGATTCAGAAATATGCA+GGG + chr8.3:27692151-27692170 MS.gene89638:CDS 35.0%
TGCAAAACATCCATCAAACA+AGG - chr8.3:27691202-27691221 None:intergenic 35.0%
TGCCAATTATTGTTACAGAG+AGG - chr8.3:27691892-27691911 None:intergenic 35.0%
TTCAACCAAAACAAAGGGTT+GGG - chr8.3:27691833-27691852 None:intergenic 35.0%
TTCCTGATTCAGAAATATGC+AGG + chr8.3:27692150-27692169 MS.gene89638:CDS 35.0%
TTCCTGTGATCTTACTCATT+TGG + chr8.3:27690910-27690929 MS.gene89638:intron 35.0%
TTTCAACCAAAACAAAGGGT+TGG - chr8.3:27691834-27691853 None:intergenic 35.0%
TTTCCTCTTTGAACTCCTTA+TGG - chr8.3:27691384-27691403 None:intergenic 35.0%
! ATTTATCTTTTCGTGGCTGT+TGG + chr8.3:27693080-27693099 MS.gene89638:CDS 35.0%
! GTATAGGAGTATGGGAAATT+AGG + chr8.3:27691046-27691065 MS.gene89638:intron 35.0%
! TAAACGACTTGGAATAAGCA+AGG + chr8.3:27692092-27692111 MS.gene89638:CDS 35.0%
! TCACTGGCATTTTTGTTACT+TGG + chr8.3:27692357-27692376 MS.gene89638:CDS 35.0%
! TTTATCTTTTCGTGGCTGTT+GGG + chr8.3:27693081-27693100 MS.gene89638:CDS 35.0%
!! TTGGAGCATTTATCTTTTCG+TGG + chr8.3:27693073-27693092 MS.gene89638:CDS 35.0%
!!! CTATTTTAGTTCAGCTTCTC+AGG - chr8.3:27690980-27690999 None:intergenic 35.0%
!!! TTTTTTTTTCCTCGGCATGT+GGG + chr8.3:27691430-27691449 MS.gene89638:intron 35.0%
!!! TTTTTTTTTTCCTCGGCATG+TGG + chr8.3:27691429-27691448 MS.gene89638:intron 35.0%
AACAGCTGCATTTGTAGCAA+AGG - chr8.3:27692043-27692062 None:intergenic 40.0%
AGTGCTATGGATGCTTCATT+TGG + chr8.3:27690674-27690693 MS.gene89638:CDS 40.0%
CCTCCCATTCCTATAATCAA+GGG + chr8.3:27693129-27693148 MS.gene89638:CDS 40.0%
CTGTGCACGATAAGGATTAA+AGG - chr8.3:27691154-27691173 None:intergenic 40.0%
CTTTAATCCTTATCGTGCAC+AGG + chr8.3:27691152-27691171 MS.gene89638:intron 40.0%
GATATTGCAACCTGAAGTGT+TGG - chr8.3:27692417-27692436 None:intergenic 40.0%
GATTCATGTGAAACACGAGA+GGG - chr8.3:27691570-27691589 None:intergenic 40.0%
GGTCCCTTGATTATAGGAAT+GGG - chr8.3:27693135-27693154 None:intergenic 40.0%
GTCTAGCAGACAATATCATC+AGG - chr8.3:27692563-27692582 None:intergenic 40.0%
GTTAGTTAGGATTTGGGTAG+TGG + chr8.3:27691094-27691113 MS.gene89638:intron 40.0%
TCCTATAATCAAGGGACCAA+GGG + chr8.3:27693137-27693156 MS.gene89638:CDS 40.0%
TCCTCCCATTCCTATAATCA+AGG + chr8.3:27693128-27693147 MS.gene89638:CDS 40.0%
TGATTCATGTGAAACACGAG+AGG - chr8.3:27691571-27691590 None:intergenic 40.0%
TGGCTGGTAAACGTATACAA+AGG + chr8.3:27690464-27690483 MS.gene89638:CDS 40.0%
TGGTCCCTTGATTATAGGAA+TGG - chr8.3:27693136-27693155 None:intergenic 40.0%
TTCCTATAATCAAGGGACCA+AGG + chr8.3:27693136-27693155 MS.gene89638:CDS 40.0%
TTCTGCAAATTGACAGGGTA+AGG - chr8.3:27690598-27690617 None:intergenic 40.0%
! AGACTTCCTTCCTTGTTTGA+TGG + chr8.3:27691189-27691208 MS.gene89638:intron 40.0%
! ATGATTGTATCTGGGTTGAG+TGG + chr8.3:27690367-27690386 MS.gene89638:CDS 40.0%
! GGTTTTTCTCTCAGCTTCTT+AGG + chr8.3:27693016-27693035 MS.gene89638:intron 40.0%
! TATATCCGTACTTTGGTGCA+GGG + chr8.3:27693050-27693069 MS.gene89638:intron 40.0%
! TTATATCCGTACTTTGGTGC+AGG + chr8.3:27693049-27693068 MS.gene89638:intron 40.0%
!! AACTGGTTCTGCAAATTGAC+AGG - chr8.3:27690604-27690623 None:intergenic 40.0%
!! ACTGGTTCTGCAAATTGACA+GGG - chr8.3:27690603-27690622 None:intergenic 40.0%
!! ATGGATGTTTGGTTCTCTTG+TGG + chr8.3:27690867-27690886 MS.gene89638:intron 40.0%
!! TCAATTGGTCAGAAGTGCTA+TGG + chr8.3:27690661-27690680 MS.gene89638:CDS 40.0%
!!! TTTTTTTTCCTCGGCATGTG+GGG + chr8.3:27691431-27691450 MS.gene89638:intron 40.0%
AAAATGCCATGACCCGAACA+CGG - chr8.3:27690441-27690460 None:intergenic 45.0%
ATGAGAGGGTCTCTGCTTAA+GGG - chr8.3:27691609-27691628 None:intergenic 45.0%
CCCTTGATTATAGGAATGGG+AGG - chr8.3:27693132-27693151 None:intergenic 45.0%
GGGCTTGTAATGCATCTCTT+GGG - chr8.3:27691342-27691361 None:intergenic 45.0%
TAGGCATACCTTTCCACACT+GGG - chr8.3:27690499-27690518 None:intergenic 45.0%
TATATGATCGGCTGAAGAGC+AGG + chr8.3:27692460-27692479 MS.gene89638:CDS 45.0%
TATGGGTGACAGACAGATGT+TGG + chr8.3:27691490-27691509 MS.gene89638:intron 45.0%
TTAGGCATACCTTTCCACAC+TGG - chr8.3:27690500-27690519 None:intergenic 45.0%
TTCCTCGGTTGGAAAGAGAA+CGG - chr8.3:27692391-27692410 None:intergenic 45.0%
TTCTCTTTCCAACCGAGGAA+GGG + chr8.3:27692391-27692410 MS.gene89638:CDS 45.0%
! CAATCAATCCCGATTCGTTC+AGG + chr8.3:27692284-27692303 MS.gene89638:CDS 45.0%
! GCCCTGCATATTTCTGAATC+AGG - chr8.3:27692155-27692174 None:intergenic 45.0%
!!! AAATGATTTTTTTTTTTAAA+TGG + chr8.3:27692845-27692864 MS.gene89638:intron 5.0%
AAGGACAGTGTTTCCCAGTG+TGG + chr8.3:27690483-27690502 MS.gene89638:CDS 50.0%
AGATGCATTACAAGCCCGAG+AGG + chr8.3:27691345-27691364 MS.gene89638:intron 50.0%
AGGCAACGAGGAGGTAATTG+GGG - chr8.3:27690409-27690428 None:intergenic 50.0%
CAGACTTCCTGTGCACGATA+AGG - chr8.3:27691162-27691181 None:intergenic 50.0%
CAGTGTTTCCCAGTGTGGAA+AGG + chr8.3:27690488-27690507 MS.gene89638:CDS 50.0%
CATCGAGAAAGGGGAAGAGA+GGG - chr8.3:27691673-27691692 None:intergenic 50.0%
CATGAGAGGGTCTCTGCTTA+AGG - chr8.3:27691610-27691629 None:intergenic 50.0%
CCAAAACAAAGGGTTGGGAG+TGG - chr8.3:27691828-27691847 None:intergenic 50.0%
CGGGCTTGTAATGCATCTCT+TGG - chr8.3:27691343-27691362 None:intergenic 50.0%
CTCTGACAGCCTGAACGAAT+CGG - chr8.3:27692296-27692315 None:intergenic 50.0%
GAGGCAACGAGGAGGTAATT+GGG - chr8.3:27690410-27690429 None:intergenic 50.0%
GATGCATTACAAGCCCGAGA+GGG + chr8.3:27691346-27691365 MS.gene89638:intron 50.0%
GCCCTTGGTCCCTTGATTAT+AGG - chr8.3:27693141-27693160 None:intergenic 50.0%
GCTGTTGGGAACCTTCTTGA+TGG + chr8.3:27693095-27693114 MS.gene89638:CDS 50.0%
GGGTAGGTGGCTAAACCATA+AGG + chr8.3:27691366-27691385 MS.gene89638:intron 50.0%
GTGATCACCTCAAATGCCCT+TGG - chr8.3:27693156-27693175 None:intergenic 50.0%
GTTCTCTTTCCAACCGAGGA+AGG + chr8.3:27692390-27692409 MS.gene89638:CDS 50.0%
TCCAACCCTGCACCAAAGTA+CGG - chr8.3:27693058-27693077 None:intergenic 50.0%
TCTGACAGCCTGAACGAATC+GGG - chr8.3:27692295-27692314 None:intergenic 50.0%
! GTCATGGCATTTTCTGTGGC+TGG + chr8.3:27690448-27690467 MS.gene89638:CDS 50.0%
! TCGGGTCATGGCATTTTCTG+TGG + chr8.3:27690444-27690463 MS.gene89638:CDS 50.0%
!! CCACTCCCAACCCTTTGTTT+TGG + chr8.3:27691825-27691844 MS.gene89638:intron 50.0%
ACGAGAGGGTTTCTGCCCAA+GGG - chr8.3:27691556-27691575 None:intergenic 55.0%
AGAGGGTCTCTGCTTAAGGG+CGG - chr8.3:27691606-27691625 None:intergenic 55.0%
AGGGTTGGGAGTGGCACAAA+TGG - chr8.3:27691819-27691838 None:intergenic 55.0%
AGGGTTTCTGCCCAAGGGTA+GGG - chr8.3:27691551-27691570 None:intergenic 55.0%
CATTACAAGCCCGAGAGGGT+AGG + chr8.3:27691350-27691369 MS.gene89638:intron 55.0%
CCATCGAGAAAGGGGAAGAG+AGG - chr8.3:27691674-27691693 None:intergenic 55.0%
CCTCTCTTCCCCTTTCTCGA+TGG + chr8.3:27691671-27691690 MS.gene89638:intron 55.0%
CGAGGCAACGAGGAGGTAAT+TGG - chr8.3:27690411-27690430 None:intergenic 55.0%
CGATTCGTTCAGGCTGTCAG+AGG + chr8.3:27692294-27692313 MS.gene89638:CDS 55.0%
GACCGTTCTCTTTCCAACCG+AGG + chr8.3:27692386-27692405 MS.gene89638:CDS 55.0%
GGCAACGAGGAGGTAATTGG+GGG - chr8.3:27690408-27690427 None:intergenic 55.0%
GGTTTAGCCACCTACCCTCT+CGG - chr8.3:27691363-27691382 None:intergenic 55.0%
GTTTAGCCACCTACCCTCTC+GGG - chr8.3:27691362-27691381 None:intergenic 55.0%
TTCCCGTCTTCCCTACCCTT+GGG + chr8.3:27691538-27691557 MS.gene89638:intron 55.0%
TTTCCCGTCTTCCCTACCCT+TGG + chr8.3:27691537-27691556 MS.gene89638:intron 55.0%
! TCCGTACTTTGGTGCAGGGT+TGG + chr8.3:27693054-27693073 MS.gene89638:intron 55.0%
! TTTTCCTCGGCATGTGGGGT+GGG + chr8.3:27691435-27691454 MS.gene89638:intron 55.0%
! TTTTTCCTCGGCATGTGGGG+TGG + chr8.3:27691434-27691453 MS.gene89638:intron 55.0%
!! CAAGGGACCAAGGGCATTTG+AGG + chr8.3:27693146-27693165 MS.gene89638:CDS 55.0%
!! CTGAAGTGTTGGCCCTTCCT+CGG - chr8.3:27692406-27692425 None:intergenic 55.0%
AGGGTCTCTGCTTAAGGGCG+GGG - chr8.3:27691604-27691623 None:intergenic 60.0%
ATCACGCCGTGTTCGGGTCA+TGG + chr8.3:27690432-27690451 MS.gene89638:CDS 60.0%
CACGAGAGGGTTTCTGCCCA+AGG - chr8.3:27691557-27691576 None:intergenic 60.0%
CCTCGAATCACGCCGTGTTC+GGG + chr8.3:27690426-27690445 MS.gene89638:CDS 60.0%
CGAGGAAGGGCCAACACTTC+AGG + chr8.3:27692404-27692423 MS.gene89638:CDS 60.0%
CGTGATTCGAGGCAACGAGG+AGG - chr8.3:27690418-27690437 None:intergenic 60.0%
CTGCCCAAGGGTAGGGAAGA+CGG - chr8.3:27691544-27691563 None:intergenic 60.0%
CTGCTTAAGGGCGGGGAAGA+AGG - chr8.3:27691597-27691616 None:intergenic 60.0%
GAGGGTCTCTGCTTAAGGGC+GGG - chr8.3:27691605-27691624 None:intergenic 60.0%
GAGGGTTTCTGCCCAAGGGT+AGG - chr8.3:27691552-27691571 None:intergenic 60.0%
GCCTCGAATCACGCCGTGTT+CGG + chr8.3:27690425-27690444 MS.gene89638:CDS 60.0%
TACAAGCCCGAGAGGGTAGG+TGG + chr8.3:27691353-27691372 MS.gene89638:intron 60.0%
TGCCCAAGGGTAGGGAAGAC+GGG - chr8.3:27691543-27691562 None:intergenic 60.0%
TTTCCTCGGCATGTGGGGTG+GGG + chr8.3:27691436-27691455 MS.gene89638:intron 60.0%
!! AGTGTTGGCCCTTCCTCGGT+TGG - chr8.3:27692402-27692421 None:intergenic 60.0%
CCCGAACACGGCGTGATTCG+AGG - chr8.3:27690429-27690448 None:intergenic 65.0%
CGGCGTGATTCGAGGCAACG+AGG - chr8.3:27690421-27690440 None:intergenic 65.0%
TTCCTCGGCATGTGGGGTGG+GGG + chr8.3:27691437-27691456 MS.gene89638:intron 65.0%
TCCTCGGCATGTGGGGTGGG+GGG + chr8.3:27691438-27691457 MS.gene89638:intron 70.0%
CCTCGGCATGTGGGGTGGGG+GGG + chr8.3:27691439-27691458 MS.gene89638:intron 75.0%
! CCCCCCCACCCCACATGCCG+AGG - chr8.3:27691442-27691461 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 27690367 27693227 27690367 ID=MS.gene89638
chr8.3 mRNA 27690367 27693227 27690367 ID=MS.gene89638.t1;Parent=MS.gene89638
chr8.3 exon 27690367 27690509 27690367 ID=MS.gene89638.t1.exon1;Parent=MS.gene89638.t1
chr8.3 CDS 27690367 27690509 27690367 ID=cds.MS.gene89638.t1;Parent=MS.gene89638.t1
chr8.3 exon 27690616 27690719 27690616 ID=MS.gene89638.t1.exon2;Parent=MS.gene89638.t1
chr8.3 CDS 27690616 27690719 27690616 ID=cds.MS.gene89638.t1;Parent=MS.gene89638.t1
chr8.3 exon 27692058 27692502 27692058 ID=MS.gene89638.t1.exon3;Parent=MS.gene89638.t1
chr8.3 CDS 27692058 27692502 27692058 ID=cds.MS.gene89638.t1;Parent=MS.gene89638.t1
chr8.3 exon 27693071 27693227 27693071 ID=MS.gene89638.t1.exon4;Parent=MS.gene89638.t1
chr8.3 CDS 27693071 27693227 27693071 ID=cds.MS.gene89638.t1;Parent=MS.gene89638.t1
Gene Sequence

>MS.gene89638

ATGATTGTATCTGGGTTGAGTGGTAGTCTCTCAAGATGCCCCCAATTACCTCCTCGTTGCCTCGAATCACGCCGTGTTCGGGTCATGGCATTTTCTGTGGCTGGTAAACGTATACAAAGGACAGTGTTTCCCAGTGTGGAAAGGTATGCCTAATGAATCATTACTTTTTGAACTTGGAACTTTATGTAAGGTTCATGTTTTGTTGAATGGTAAACAATTCATTATTTTCCTTACCCTGTCAATTTGCAGAACCAGTTTTTCATCTCCTAGATTAAAATGTGATAGAGGACAAATTCAATTGGTCAGAAGTGCTATGGATGCTTCATTTGGTGATATGTCAAATGATTCTGCTGGTAACTTTTCTATCTCGACGAACTCAATTCTTATATTTCATGATACATAAAATGGATCTAGTAAAACTGGTATTTAAGTTAAATAGTATGTTTTCTGAAACAATACGGGTAGTGAAGATGAAACTTGAAAATGATTCTGTGATCATTATGGATGTTTGGTTCTCTTGTGGATGCTAGACTACATTTTTTTTTCCTGTGATCTTACTCATTTGGTTTGCTAAGTTGAAGCTATTTCTTCGTCTTCATAATTGTTGGTGCCTGAGAAGCTGAACTAAAATAGGATAAAAATAGAGTGATACTGTTAGAGATAATTATTGTAGAAGAAAGTATAGGAGTATGGGAAATTAGGAATCAGTTTCCTTGGTAGTTAGTTAGTTAGTTAGGATTTGGGTAGTGGTTAGTTTTTCTGTTTTAGGATAGTTGCTTTAGATCCTTTAATCCTTATCGTGCACAGGAAGTCTGTAAATAAAGACTTCCTTCCTTGTTTGATGGATGTTTTGCAAAACTTAGTATTTGACTTGTTTTGTCCAGTGTGAAGAGAGTATCTTTTACCTTTTCATATCAATAAATTTACAGGGATGGATAAATTTCCTTTCTGCTTTTGTTCTTTAAAAAGAATCCCAAGAGATGCATTACAAGCCCGAGAGGGTAGGTGGCTAAACCATAAGGAGTTCAAAGAGGAAATTGTTTTTCAGTTTTGTTTAGTTTTTTTTTTTTTTCCTCGGCATGTGGGGTGGGGGGGAACTGTTTTTTCAGTTAAACAACTGCTTTATGGGTGACAGACAGATGTTGGCTTAAAGTTTGACAAGAATGACTGTTTCCCGTCTTCCCTACCCTTGGGCAGAAACCCTCTCGTGTTTCACATGAATCATGACCTTCTTCCCCGCCCTTAAGCAGAGACCCTCTCATGTTAAGTTTTCACAAGTGTCATGACCTTATCATATTGAAATCCCTCTCTTCCCCTTTCTCGATGGTTATTCATAAGTTATAGAACCCACTTATTTAATGTTTAGAGAGAGAGACAGAGAGTGATGCACACATACACACACAATTTTCAGATAACAATGTCATATGTCAGCATTTAACACGAGGTGATCCATTTGTGCCACTCCCAACCCTTTGTTTTGGTTGAAATCTGTGAAACGTGTTTACTTGCATGTCTTAAGGGTCCTCTCTGTAACAATAATTGGCACCTCTATAAATTATTTTGCACCTTATCCATATGATCTATAAATTATTTTGCACCTTATCCATATGATATTTGAATCACCTTATATAAAACCAACAATAAGTTATAGCTTAACTTATTATTTTGCTGCTCCTTTGCTACAAATGCAGCTGTTTTCCCAAGAATTAATGTGAGTGATCCATATAAACGACTTGGAATAAGCAAGGAAGCTTCTGAAGAAGAAATTCAAGCAGCTAGGAACTTCCTGATTCAGAAATATGCAGGGCACAAGCCAAGTGTAGATTCAATTGAGTCGGCGCATGACAAAATAATCATGAAGAAATTCTACGAGCGCAGAAACCCAAAAATTGACATCAACAAAAAAATTAGGGCAGTCAATCAATCCCGATTCGTTCAGGCTGTCAGAGGCAGATTTCGCACTCCATCCACTATATTCATTATAAAAACTTCACTGGCATTTTTGTTACTTGGTGTTCTGACCGTTCTCTTTCCAACCGAGGAAGGGCCAACACTTCAGGTTGCAATATCTCTGTTCGTCACAACGTATTTCGTATATGATCGGCTGAAGAGCAGGATAAGAGCTTTGCTTTATGGGTATGTAAACATTGATTTCTCTCACTCTTCTAAATTTTTTAAACGTATAGTACTTCACCTGATGATATTGTCTGCTAGACCATTGTTGAGCATTTTTCATTTTGATAGCATAACTTAGGGTGCGTTTGTTTCAGCTTTAAAAAAAAAATAGATTTTGAGTTGGAAGAATCTAGAGATTTTTTTTTTAGAGATTTTTAAAAAAATCTAAAGCTATTTCTGTTTGTTTACTATCATAAAAATCATTTGTTGAAGATTTGAAGCTCTTACACTTGAGTTCCTTATGTTTAGAAAAAAATAGATTTTGGAAAAGCTACTTGAAATAGCTTTTCATTTTGAGGCTAAAAATGATTTTTTTTTTTAAATGGATTTTTTAAAAATCTAAAACAAAGACTACAAAAATAAAAGTGATTTTTTTAGATAAAAAATAGATTTTTTTCAAAAAAATTCAAAACAAACGGGCCCTTGTTCTCATTGTATGACATTCTGATATTAATATCATTTTGATGCATTTATGGTTTTTCTCTCAGCTTCTTAGGTTCTGCTTATTTATATCCGTACTTTGGTGCAGGGTTGGAGCATTTATCTTTTCGTGGCTGTTGGGAACCTTCTTGATGGTGTCAGTAATTCCTCCCATTCCTATAATCAAGGGACCAAGGGCATTTGAGGTGATCACATCGTTGATAACATATGTTTTATTATGGGTTTCATCGACCTATCTTATATGA

Protein sequence

>MS.gene89638.t1

MIVSGLSGSLSRCPQLPPRCLESRRVRVMAFSVAGKRIQRTVFPSVERTSFSSPRLKCDRGQIQLVRSAMDASFGDMSNDSAAVFPRINVSDPYKRLGISKEASEEEIQAARNFLIQKYAGHKPSVDSIESAHDKIIMKKFYERRNPKIDINKKIRAVNQSRFVQAVRGRFRTPSTIFIIKTSLAFLLLGVLTVLFPTEEGPTLQVAISLFVTTYFVYDRLKSRIRALLYGVGAFIFSWLLGTFLMVSVIPPIPIIKGPRAFEVITSLITYVLLWVSSTYLI