AlfalfaGEDB | MS.gene033021

M. sativa cultivar XinJiangDaYe / MS.gene033021

KEGG: K08856
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033021.t1	XP_003609185.1	99.7	342	1	0	1	342	1	342	6.90E-199	703

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033021.t1	O75716	34.6	318	173	8	19	336	11	293	3.8e-44	180.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033021.t1	G7JU40	99.7	342	1	0	1	342	1	342	5.0e-199	703.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene033021	MS.gene063165	PPI
MS.gene033021	MS.gene37495	PPI
MS.gene033021	MS.gene053173	PPI
MS.gene033021	MS.gene014281	PPI
MS.gene033021	MS.gene68222	PPI
MS.gene034184	MS.gene033021	PPI
MS.gene054551	MS.gene033021	PPI
MS.gene064894	MS.gene033021	PPI
MS.gene65431	MS.gene033021	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033021.t1	MTR_4g112900	99.708	342	1	0	1	342	1	342	0.0	710
MS.gene033021.t1	MTR_3g026250	27.414	321	192	9	18	337	17	297	2.39e-28	116
MS.gene033021.t1	MTR_8g088590	27.551	196	127	7	149	342	263	445	3.69e-12	67.4
MS.gene033021.t1	MTR_8g035890	24.281	313	169	12	26	332	14	264	8.26e-12	65.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033021.t1	AT5G08160	83.573	347	52	2	1	342	1	347	0.0	609
MS.gene033021.t1	AT5G08160	78.426	343	41	2	1	342	1	311	0.0	551
MS.gene033021.t1	AT2G32850	29.393	313	179	11	27	337	26	298	1.58e-28	116
MS.gene033021.t1	AT2G32850	29.393	313	179	11	27	337	26	298	1.69e-28	116
MS.gene033021.t1	AT4G04710	27.037	270	140	13	33	295	41	260	5.65e-13	70.1
MS.gene033021.t1	AT4G04710	27.037	270	140	13	33	295	41	260	6.23e-13	70.1
MS.gene033021.t1	AT1G12680	25.581	301	165	12	32	332	111	352	1.67e-11	65.5
MS.gene033021.t1	AT2G45490	24.127	315	163	12	28	332	22	270	2.02e-11	64.3
MS.gene033021.t1	AT4G04710	26.400	250	128	12	33	275	41	241	3.28e-11	64.7

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Find 101 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGGTTGCTCATTCTC+CGG	0.492235	8.4:+17590010	None:intergenic
AAAGACTCTTCTCATCTCGC+AGG	0.571736	8.4:+17590196	MS.gene033021:CDS
AAATAACAAGTACGCTTCAT+GGG	0.562791	8.4:-17591490	None:intergenic
AAATATTTGAAGAACATCTG+AGG	0.664166	8.4:-17591583	None:intergenic
AAATCCATCAGTATGGCCAG+TGG	0.697664	8.4:-17592076	None:intergenic
AAGAATGAATCACCTGCAAC+TGG	0.444808	8.4:-17592150	None:intergenic
AATCCCACAGCTCAGGGGCT+CGG	0.444654	8.4:-17592632	None:intergenic
AATGTTCCATCCAAATGAAC+TGG	0.469154	8.4:-17591513	None:intergenic
ACATCATTGTGAGCATAAGG+AGG	0.631567	8.4:-17592010	None:intergenic
ACCACCACTGGCCATACTGA+TGG	0.518489	8.4:+17592072	MS.gene033021:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAACAAGTACGCTTCAT+GGG	-	chr8.4:17591493-17591512	None:intergenic	30.0%
AAATATTTCGGCAGGTAAAA+AGG	+	chr8.4:17591598-17591617	MS.gene033021:intron	30.0%
AAATGAAAATTCAGCTTCAC+CGG	-	chr8.4:17590346-17590365	None:intergenic	30.0%
AAATGTAAAGTGACATGGTT+TGG	-	chr8.4:17591036-17591055	None:intergenic	30.0%
AACAGAAATCCAATAGAGTT+GGG	+	chr8.4:17593472-17593491	MS.gene033021:intron	30.0%
ACAATTTGAATTAGTGACTC+TGG	-	chr8.4:17593201-17593220	None:intergenic	30.0%
ACACAAAAGATCAATTCTGA+TGG	+	chr8.4:17591135-17591154	MS.gene033021:intron	30.0%
AGGATCAATATGCACATTAA+GGG	-	chr8.4:17592849-17592868	None:intergenic	30.0%
ATATGAAAAACAATACTGGC+AGG	-	chr8.4:17592939-17592958	None:intergenic	30.0%
CAAATCAAGCAATAATTCCA+AGG	-	chr8.4:17593446-17593465	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	17590013	17593890	17590013	ID=MS.gene033021
chr8.4	mRNA	17590013	17593890	17590013	ID=MS.gene033021.t1;Parent=MS.gene033021
chr8.4	exon	17590013	17590217	17590013	ID=MS.gene033021.t1.exon1;Parent=MS.gene033021.t1
chr8.4	CDS	17590013	17590217	17590013	ID=cds.MS.gene033021.t1;Parent=MS.gene033021.t1
chr8.4	exon	17591221	17591363	17591221	ID=MS.gene033021.t1.exon2;Parent=MS.gene033021.t1
chr8.4	CDS	17591221	17591363	17591221	ID=cds.MS.gene033021.t1;Parent=MS.gene033021.t1
chr8.4	exon	17591468	17591611	17591468	ID=MS.gene033021.t1.exon3;Parent=MS.gene033021.t1
chr8.4	CDS	17591468	17591611	17591468	ID=cds.MS.gene033021.t1;Parent=MS.gene033021.t1
chr8.4	exon	17591974	17592159	17591974	ID=MS.gene033021.t1.exon4;Parent=MS.gene033021.t1
chr8.4	CDS	17591974	17592159	17591974	ID=cds.MS.gene033021.t1;Parent=MS.gene033021.t1
chr8.4	exon	17592600	17592724	17592600	ID=MS.gene033021.t1.exon5;Parent=MS.gene033021.t1
chr8.4	CDS	17592600	17592724	17592600	ID=cds.MS.gene033021.t1;Parent=MS.gene033021.t1
chr8.4	exon	17593665	17593890	17593665	ID=MS.gene033021.t1.exon6;Parent=MS.gene033021.t1
chr8.4	CDS	17593665	17593890	17593665	ID=cds.MS.gene033021.t1;Parent=MS.gene033021.t1

Gene Sequence

>MS.gene033021

ATGGGTTGCTCATTCTCCGGTTTAAATGCATTATATGATTCTGTGAACGGAGGTGGTGATGTTTGGATCAACGAGAATCGATTCCGCATCCTGAGGCAGCTCGGAGAAGGTGGCTTTGCTTACGTTTATCTCGTTAAGGAAGCTCCTAATGACTCTGCTACCGGTGGTCTCGCTAATAAGCTCAAAGACTCTTCTCATCTCGCAGGTTCGATTCCTTTCGATCCATTTTTAATTGTTAAGATGTGTCATAGCCTGATCTATGTCATTTGTTGAATTTTTTTACTCGATCTGTGATTGCATTGAAATTAAGATATGTTTTGATTTTCCGATCCGGTGAAGCTGAATTTTCATTTGTGTTTCTGTTGTGTTGCATTGCATGCTCTTGTTATTGCGTTTTATGGTGAAGTGATTTTGTGATTAGACTCGTGTTGGTTGCTTTGATGATGCTAATTGATAACAGAAGTTCTGTTTTGTTAATCGATTTATCGAGTTTGAGCTTAATTTTGATAATAAGTGGTGAAAAAAAAATTCCATTTTGCTGTAGTAACCAAGAGTAAAAGCTTTTTATGTAAACTGCTTTTTGTTTTTAAATGAATATTAGATGGCAATGTGTTATTCCGTGGATCTCTGTGTGTGTGTGCGCGCGCGATTGTTTTGGCGAGCATTTAGCAATTTTGAATTGAAATTGGAATTGATTTGTTATAGTCTTAGTTAAAATTGAGTTTGAAGTCAAGTGATTTATGTTTGAATGTTTTGGCTTTGAAATCAACTTTGATATGTAAAATTTTCAATTTTCCCCAAAAGCTACTTTTCATCACTTCTAGTCAAACCAAGGTTTCGAAAGATGTTTGGTTTCACTTCCAAAGGAGTCAAAATTACTGACATGTTTGGTTACTTTTGAGTAGAATCAATTTTGTCTCCAAAATTGATTCTACTTAACGATATGATTTTTAGCTTTTGATTCTAGAATTGATTTTTACACACAAATTTATAGTTCACCTCACTTTTACATGAATGAATCCAAACCATGTCACTTTACATTTTACTCACTTTTAGTCAGAGTCAATTTTACAAAATCAATTCACTCAAAATCAATTTTTGTCACCGCAGAACCAAACATACACACAAAAGATCAATTCTGATGGTTTCCACTGTGAAATCAAACACACACACACTAATAGATCAACTATACTGTCTCTTATCTGCAGATGATGGATCTTATGCTATGAAAAAGGTCCTCATTCAGAACAACGAGCAGCTGGAGTTGGTCAGGGAGGAGATCCGCGTCTCTTCACTGTTTAGTCACCCCAATCTCCTCCCACTTCTTGATCATGCAATCATATCTGTTAAGGTGAAGTAGTAATTAATTGCAACCAACACTTACACCTTTCCTGCTTAGCTCGGCATGCTTTTGTGATTGTACGATGATGTAGAATGTGTCCCTTTTGTTGGCAGCCTACTCAAGAAACATCTTGGACCCATGAAGCGTACTTGTTATTTCCAGTTCATTTGGATGGAACATTGCTAGACAATGCCAAAACAATGAAAGCCAAGAAGGAACACTATTCCACCTCAGATGTTCTTCAAATATTTCGGCAGGTAAAAAGGACAGTATTTTTATTATGCATTTTACTTATAATATCTTTTTTCATCAGGGGAGGGCGACTAGGGACCTCAAGCATCACTTTTGCAATTCAACATTTATTATCTGCCGTTTAGACCTTATTATAGTCATTCTTGGTTGTCACACACAAATTAGTATCATGCAAGTAATTCATGACATGAGACTTGGGTTATTGCTGCCTTGAGAATCATTTGTACAAAAAGAATGGATTTCTCTGGTCTTATTTCAGCTTTTAGTTTCCATCTTCTTTTTGAGATTTTAGTTCTACTATCAATTTGAAGTGACAAAAATTGTTTTATGATAAGACCCTTTTAACCTCGTAAAATCAACTCAACAGCTTTGTGCAGGACTAAAGCACATGCACAATTTAGATCCTCCTTATGCTCACAATGATGTCAAACCTGGTAATGTTCTCATAACACACAGAAAAGGACAACCACCACTGGCCATACTGATGGATTTTGGCAGTGCTCGTCCCGCAAGGAAGAAGATTAGCTCCAGATCAGAGGCACTCCAGTTGCAGGTGATTCATTCTTCCTTTTTTTTAGTGTTTGTAAATAAAAACTTTCTACTGCTTTAATATTTTAGAACTTCCACTTGCAGAACTGGTTTCTGTGACACAGCACAAAAATGTGTGGTGCTTATAACTATATCACATTTTGGATGTCTTTGTGATTCTTTTGCTCCATTTGTATTATGTGAAATTGTATTGCCTAATGTGGTAGGTGCATATGCATCATCAAGGTGATAATAGATTTTGTATTTCTTAATTTACATTACCTGGTCTTACATTCCATTTAAAACTAAATTTCTTTGCTTGTGATTTCTTTTTGGCAATACTAGTTCTTCTGATAGTTTTTCCAGTTTCGTGTAGATTTTAAAAATATGAAAAAGAAAAGCTTCTTTTCGGTCATCTAGCTTGGATTTTCTGACCTGGTGTTTGCCACTTGTCTTGCTATGTAGGAATGGGCATCTGAACATGTCTCTGCTCCTTTCCGAGCCCCTGAGCTGTGGGATTGCCCAAGCCATGCTGATATAGACGAGAGGACTGACGTTTGGTCACTAGGATGCACATTATATGCAATAATGTGAGGATTAATTCTTCTTTTGTAATTATGTTAATTTGATGTTTACATTTTATATCAAGTGTGCCTTCATAACCACATTTTGGTCCTCAACTCCTCATATGTGCCATGCACTTGATCTAAACCCTTAATGTGCATATTGATCCTGCAAGTTAGCAATGGATTGAAATTTAGGTTGTATATTTCAATTATCAAAGCTACTATGTCATCATCCCCTGCCAGTATTGTTTTTCATATATTTGGTATATGTTGTTCACATGTCTGTGTGTGAGGAAGTGCTTATCAAGTTTCAAACTAGTTTGTCTTTACAATTTAGAAACAACATTTGAGAGTTTTATTTATTTGTTTCTTTAGTGTAGCCTATAAAATAAGAGAAAGGAAGGGTTTTTTTTGCCCTGACCAAAATGTTCTTGTAGATGAGATGTCAAGAGGGCTGAGCTCTGGAGAGGGGAAAGTGACCAAGTCCTACTAAAGAGCCAGAGTCACTAATTCAAATTGTGAAATGTTTGTGTGATAAAAAGTTAGAAATCACATTAAACATCAATACTATTTTTGAATTTTGAGTAATGTTTACTGATGCCCATGCTATTGGATCACTATGCATATATTATTGTTTTGGGGTAATGCTCATATCAAAACTTGTTTGCTAGTCCACGTGAATAAAATCCAATAGCTTTGTATAGAAGTTTGACCGTGTTTTCTTGACTCTTGAGGGCTTCTCCCTTGGAATTATTGCTTGATTTGGCACTCAACAGAAATCCAATAGAGTTGGGATAATTTTTATTTACTCTTTCAAGTATTAGCAAAGTCAACAAACTACTTCCATCAGTACCATCAAATAACTCTTGCTTGAAAACAACTATCCGGTGTTAGAAACATATCTTGTCAGCTTTAGTACAGATGTGTTTGATTCTTTATTAATTCATGTGGCTAAAATTTTCAGGTATGGGGTATCTCCGTTTGAATATGCACTTGGAGAGTCTGGTGGAAGCCTGCAACTGGCTATTGTAAATGCTCAGGTCAAATGGCCAGCTGGACTTAAACCTTCATATCCAGAAGCTCTTCATCAGTTCGTGTCATGGATGCTTCAGCCCCAAGCTGCTATGAGGCCCCGGATAGACGATATCATTATCCATGTTGATAAGTTGATTGCAAAGTTCTCTCAATGA

Protein sequence

>MS.gene033021.t1

MGCSFSGLNALYDSVNGGGDVWINENRFRILRQLGEGGFAYVYLVKEAPNDSATGGLANKLKDSSHLADDGSYAMKKVLIQNNEQLELVREEIRVSSLFSHPNLLPLLDHAIISVKPTQETSWTHEAYLLFPVHLDGTLLDNAKTMKAKKEHYSTSDVLQIFRQLCAGLKHMHNLDPPYAHNDVKPGNVLITHRKGQPPLAILMDFGSARPARKKISSRSEALQLQEWASEHVSAPFRAPELWDCPSHADIDERTDVWSLGCTLYAIMYGVSPFEYALGESGGSLQLAIVNAQVKWPAGLKPSYPEALHQFVSWMLQPQAAMRPRIDDIIIHVDKLIAKFSQ