Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033230.t1 | RHN63526.1 | 87.3 | 482 | 21 | 3 | 1 | 478 | 10 | 455 | 7.60E-236 | 826.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033230.t1 | Q6GNS3 | 44.7 | 468 | 242 | 9 | 21 | 478 | 13 | 473 | 1.4e-108 | 394.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033230.t1 | A0A396ID67 | 87.3 | 482 | 21 | 3 | 1 | 478 | 10 | 455 | 5.5e-236 | 826.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene033230 | MS.gene86289 | PPI |
| MS.gene033230 | MS.gene54064 | PPI |
| MS.gene033230 | MS.gene015887 | PPI |
| MS.gene033230 | MS.gene021568 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033230.t1 | MTR_4g107030 | 85.138 | 471 | 20 | 3 | 1 | 467 | 1 | 425 | 0.0 | 811 |
| MS.gene033230.t1 | MTR_3g064880 | 72.674 | 516 | 92 | 6 | 7 | 478 | 1 | 511 | 0.0 | 734 |
| MS.gene033230.t1 | MTR_5g091890 | 54.762 | 462 | 191 | 6 | 19 | 472 | 14 | 465 | 2.83e-166 | 478 |
| MS.gene033230.t1 | MTR_5g089690 | 39.297 | 313 | 155 | 9 | 164 | 454 | 5 | 304 | 3.86e-51 | 177 |
| MS.gene033230.t1 | MTR_5g091160 | 38.462 | 312 | 158 | 7 | 164 | 454 | 5 | 303 | 3.72e-50 | 174 |
| MS.gene033230.t1 | MTR_5g090460 | 39.731 | 297 | 151 | 11 | 165 | 454 | 16 | 291 | 4.63e-47 | 166 |
| MS.gene033230.t1 | MTR_5g008620 | 38.585 | 311 | 142 | 10 | 164 | 454 | 5 | 286 | 2.22e-46 | 164 |
| MS.gene033230.t1 | MTR_5g006990 | 37.188 | 320 | 143 | 9 | 164 | 454 | 5 | 295 | 2.70e-45 | 161 |
| MS.gene033230.t1 | MTR_5g011640 | 35.604 | 323 | 152 | 10 | 164 | 451 | 5 | 306 | 3.93e-42 | 153 |
| MS.gene033230.t1 | MTR_5g011470 | 35.604 | 323 | 152 | 10 | 164 | 451 | 5 | 306 | 4.49e-42 | 153 |
| MS.gene033230.t1 | MTR_5g092540 | 46.703 | 182 | 81 | 3 | 250 | 417 | 8 | 187 | 3.73e-39 | 142 |
| MS.gene033230.t1 | MTR_5g091490 | 38.889 | 270 | 119 | 8 | 166 | 417 | 9 | 250 | 3.75e-39 | 144 |
| MS.gene033230.t1 | MTR_5g090030 | 44.059 | 202 | 102 | 4 | 250 | 451 | 45 | 235 | 3.55e-37 | 138 |
| MS.gene033230.t1 | MTR_8g442440 | 60.345 | 58 | 23 | 0 | 249 | 306 | 12 | 69 | 3.20e-16 | 74.3 |
| MS.gene033230.t1 | MTR_4g069000 | 35.542 | 166 | 80 | 5 | 312 | 454 | 31 | 192 | 9.44e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033230.t1 | AT2G03820 | 58.664 | 479 | 168 | 10 | 10 | 471 | 6 | 471 | 0.0 | 560 |
Find 104 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATCAACTCCTCCAATTC+AGG | 0.234477 | 8.4:+20571153 | None:intergenic |
| GGAACGTGATCAATTCTTAA+AGG | 0.234838 | 8.4:-20571178 | MS.gene033230:CDS |
| TACATAGCTTTGGGAAATAT+TGG | 0.252016 | 8.4:-20571690 | MS.gene033230:CDS |
| TGCTCAAGTTGCTCGAGTTT+TGG | 0.255945 | 8.4:-20571442 | MS.gene033230:CDS |
| TGGTAAATGCAGAATTTATT+TGG | 0.256762 | 8.4:-20572193 | MS.gene033230:CDS |
| CTTACCATGTCAGGTTTATC+AGG | 0.270325 | 8.4:-20572512 | None:intergenic |
| CCCAAAGCTATGTAAGCTTT+AGG | 0.296946 | 8.4:+20571699 | None:intergenic |
| TTATCATTACAACTCTTAAT+AGG | 0.303593 | 8.4:+20571825 | None:intergenic |
| TTCTTTATTAAAATCACTTC+AGG | 0.335878 | 8.4:+20571279 | None:intergenic |
| TCCTAAAGCTTACATAGCTT+TGG | 0.338275 | 8.4:-20571700 | MS.gene033230:CDS |
| GTTCAGAAGGAGGTTTATAA+TGG | 0.347373 | 8.4:-20572131 | MS.gene033230:CDS |
| ATTCTTAAAGGACCCTGAAT+TGG | 0.356998 | 8.4:-20571166 | MS.gene033230:CDS |
| AATTAAATCCTCGCGACAAA+TGG | 0.363763 | 8.4:+20571731 | None:intergenic |
| TTGGTGGCTGCAAGTAGCTT+TGG | 0.363793 | 8.4:+20572309 | None:intergenic |
| CAGACACTTCAGACACATAT+TGG | 0.363886 | 8.4:+20572397 | None:intergenic |
| CTCTTGGTTATGACCTGTAT+AGG | 0.365703 | 8.4:-20571347 | MS.gene033230:CDS |
| ACTTACTAGCAGAGAGTTAG+TGG | 0.368478 | 8.4:-20571553 | MS.gene033230:CDS |
| TGTAGTCTGACCCAAGTTCT+TGG | 0.374228 | 8.4:+20572290 | None:intergenic |
| TTTATCTCCCTTACCATGTC+AGG | 0.377835 | 8.4:-20572521 | None:intergenic |
| TGGTCCATCTGAGATTACTA+TGG | 0.385953 | 8.4:-20571490 | MS.gene033230:CDS |
| TCCTATGGAGATTGATGATA+AGG | 0.388205 | 8.4:-20571220 | MS.gene033230:CDS |
| CCTAAAGCTTACATAGCTTT+GGG | 0.388692 | 8.4:-20571699 | MS.gene033230:CDS |
| TGAATCCCTTGATCTGTTTG+AGG | 0.388839 | 8.4:-20571124 | MS.gene033230:CDS |
| GATGTGGGAAGCCTCGTTCT+TGG | 0.390234 | 8.4:-20571251 | MS.gene033230:CDS |
| CCTTGTTGAGTACGTTCAAC+AGG | 0.393536 | 8.4:-20572087 | MS.gene033230:CDS |
| ATTAAATCCTCGCGACAAAT+GGG | 0.395990 | 8.4:+20571732 | None:intergenic |
| CCCTGAATTGGAGGAGTTGA+TGG | 0.406602 | 8.4:-20571154 | MS.gene033230:CDS |
| AGACACATATTGGTTGTGTT+TGG | 0.408070 | 8.4:+20572407 | None:intergenic |
| TTCTTGGAAATCACTTCCTA+TGG | 0.410620 | 8.4:-20571235 | MS.gene033230:CDS |
| ACAACTGCAACCCACTGATC+AGG | 0.417342 | 8.4:+20572026 | None:intergenic |
| ATCTAAGAAACTGTACTTCA+AGG | 0.423477 | 8.4:+20571611 | None:intergenic |
| ACTTGCAGCCACCAAGAACT+TGG | 0.424057 | 8.4:-20572301 | MS.gene033230:CDS |
| TCTTGGTTATGACCTGTATA+GGG | 0.432161 | 8.4:-20571346 | MS.gene033230:CDS |
| TTCACAGTTTATCAAACAAT+CGG | 0.439106 | 8.4:-20572467 | MS.gene033230:CDS |
| CTTCATCCTCAAACAGATCA+AGG | 0.439568 | 8.4:+20571118 | None:intergenic |
| GGAATATATAGTGTTGGATC+TGG | 0.443227 | 8.4:-20571532 | MS.gene033230:CDS |
| GCTAGTAAGTAAGGATTTGA+AGG | 0.443338 | 8.4:+20571566 | None:intergenic |
| TCTTAGATGCTGATCAGTAT+TGG | 0.445513 | 8.4:-20571596 | MS.gene033230:CDS |
| TAACTCTCTGCTAGTAAGTA+AGG | 0.447479 | 8.4:+20571557 | None:intergenic |
| ACATGTGTGAATCATGTTCC+AGG | 0.458655 | 8.4:-20572061 | MS.gene033230:CDS |
| AAGCCTGGTGACCATGCTCT+TGG | 0.462066 | 8.4:-20571363 | MS.gene033230:CDS |
| AGCTGTCAGAATCAAACAAA+TGG | 0.463377 | 8.4:-20571922 | MS.gene033230:CDS |
| CTTAAAGGACCCTGAATTGG+AGG | 0.464001 | 8.4:-20571163 | MS.gene033230:CDS |
| CTGCAAGTAGCTTTGGCACA+CGG | 0.464118 | 8.4:+20572316 | None:intergenic |
| TGAAGATGAGGAGGATAACA+TGG | 0.467885 | 8.4:-20571100 | MS.gene033230:CDS |
| CATTACTGTTAGCCCTATAC+AGG | 0.490027 | 8.4:+20571334 | None:intergenic |
| AAACTGTACTTCAAGGTAAG+TGG | 0.497823 | 8.4:+20571618 | None:intergenic |
| GGGTTGCAGTTGTGCAACTC+AGG | 0.502047 | 8.4:-20572016 | MS.gene033230:CDS |
| CCATCAACTCCTCCAATTCA+GGG | 0.502743 | 8.4:+20571154 | None:intergenic |
| ACCTTGGTGCAAATCACAAT+AGG | 0.504166 | 8.4:+20571666 | None:intergenic |
| TAATAAAGAAGAAGAGATGT+GGG | 0.504765 | 8.4:-20571266 | MS.gene033230:CDS |
| TGCAAGTAGCTTTGGCACAC+GGG | 0.512112 | 8.4:+20572317 | None:intergenic |
| AGAATCAAACAAATGGATCA+TGG | 0.514811 | 8.4:-20571915 | MS.gene033230:CDS |
| TGAATCATGTTCCAGGGTGC+AGG | 0.515850 | 8.4:-20572054 | MS.gene033230:CDS |
| AGCAATGCTGTTAGTAACCT+TGG | 0.515955 | 8.4:+20571650 | None:intergenic |
| GAATTGGAGGAGTTGATGGC+TGG | 0.520156 | 8.4:-20571150 | MS.gene033230:CDS |
| GAGGCTGTTTCATCTAAAGT+TGG | 0.520425 | 8.4:-20571510 | MS.gene033230:CDS |
| AGTCAAAGTCAGTGTTCAGA+AGG | 0.524406 | 8.4:-20572144 | MS.gene033230:CDS |
| CAAAGTCAGTGTTCAGAAGG+AGG | 0.524866 | 8.4:-20572141 | MS.gene033230:CDS |
| TAACCAAGAGCATGGTCACC+AGG | 0.533294 | 8.4:+20571360 | None:intergenic |
| GAATGTCAATAAAGTGATGC+TGG | 0.539343 | 8.4:-20572213 | MS.gene033230:CDS |
| ATGGAGATTGATGATAAGGT+TGG | 0.544248 | 8.4:-20571216 | MS.gene033230:CDS |
| ATTAGAAACAAAGGAGCTGT+TGG | 0.544271 | 8.4:-20572267 | MS.gene033230:CDS |
| AAATGCAGAATTTATTTGGA+CGG | 0.551243 | 8.4:-20572189 | MS.gene033230:CDS |
| GCAGGCTAACCCTGATCAGT+GGG | 0.552421 | 8.4:-20572036 | MS.gene033230:CDS |
| GTTAGTGGAATATATAGTGT+TGG | 0.553313 | 8.4:-20571538 | MS.gene033230:CDS |
| CATGTCAGGTTTATCAGGCA+TGG | 0.555533 | 8.4:-20572507 | MS.gene033230:CDS |
| TAGATGCTGATCAGTATTGG+AGG | 0.561272 | 8.4:-20571593 | MS.gene033230:CDS |
| GGTTGGAGTTGATTACAACT+TGG | 0.561543 | 8.4:-20571199 | MS.gene033230:CDS |
| TCCTATTGTGATTTGCACCA+AGG | 0.561646 | 8.4:-20571667 | MS.gene033230:CDS |
| TTAATAAAGAAGAAGAGATG+TGG | 0.569687 | 8.4:-20571267 | MS.gene033230:CDS |
| ACTCAACAAGGTAAGACTGT+TGG | 0.572997 | 8.4:+20572099 | None:intergenic |
| CCTGTTGAACGTACTCAACA+AGG | 0.574739 | 8.4:+20572087 | None:intergenic |
| CGGGGCAATGCACGAGCACG+TGG | 0.577187 | 8.4:+20572336 | None:intergenic |
| CAACTGCAACCCACTGATCA+GGG | 0.578615 | 8.4:+20572027 | None:intergenic |
| TGCAGGCTAACCCTGATCAG+TGG | 0.581561 | 8.4:-20572037 | MS.gene033230:CDS |
| GGTCCATCTGAGATTACTAT+GGG | 0.584432 | 8.4:-20571489 | MS.gene033230:CDS |
| TATTTCTCTAAACGAAGTGA+TGG | 0.585862 | 8.4:-20571882 | MS.gene033230:CDS |
| GCAGAAGTTGATATTACAGA+AGG | 0.588364 | 8.4:-20572371 | MS.gene033230:CDS |
| CCACCCATAGTAATCTCAGA+TGG | 0.590820 | 8.4:+20571486 | None:intergenic |
| CTTGCAGCCACCAAGAACTT+GGG | 0.603687 | 8.4:-20572300 | MS.gene033230:CDS |
| AGTCTGACCCAAGTTCTTGG+TGG | 0.606646 | 8.4:+20572293 | None:intergenic |
| TCAGGCAACATGTCTCTCAC+AGG | 0.606692 | 8.4:-20571998 | MS.gene033230:CDS |
| TTCATCCTCAAACAGATCAA+GGG | 0.607113 | 8.4:+20571119 | None:intergenic |
| TCTGTTTGAGGATGAAGATG+AGG | 0.610516 | 8.4:-20571112 | MS.gene033230:CDS |
| GTTTGAGGATGAAGATGAGG+AGG | 0.612046 | 8.4:-20571109 | MS.gene033230:CDS |
| TTTCTATTAGAACTCATTTG+GGG | 0.613658 | 8.4:-20571395 | MS.gene033230:CDS |
| CAGACTACAATTAGAAACAA+AGG | 0.614245 | 8.4:-20572276 | MS.gene033230:CDS |
| GCAAGTAGCTTTGGCACACG+GGG | 0.617238 | 8.4:+20572318 | None:intergenic |
| TTAAATCCTCGCGACAAATG+GGG | 0.624671 | 8.4:+20571733 | None:intergenic |
| ACCTTATCATCAATCTCCAT+AGG | 0.628583 | 8.4:+20571219 | None:intergenic |
| GACGGAGCCCCATTCCAAGA+GGG | 0.629548 | 8.4:-20572171 | MS.gene033230:CDS |
| GAGCAGCTAATTCTGAAGCA+TGG | 0.629749 | 8.4:-20571957 | MS.gene033230:CDS |
| CCATCTGAGATTACTATGGG+TGG | 0.634830 | 8.4:-20571486 | MS.gene033230:CDS |
| CATGCCTGATAAACCTGACA+TGG | 0.635117 | 8.4:+20572508 | None:intergenic |
| ACAGGTCATAACCAAGAGCA+TGG | 0.640269 | 8.4:+20571352 | None:intergenic |
| AATCAGCCCCATTTGTCGCG+AGG | 0.643382 | 8.4:-20571739 | MS.gene033230:CDS |
| ATATATAGTGTTGGATCTGG+AGG | 0.644394 | 8.4:-20571529 | MS.gene033230:CDS |
| AGATGCTGATCAGTATTGGA+GGG | 0.645940 | 8.4:-20571592 | MS.gene033230:CDS |
| ATCAGGGTTAGCCTGCACCC+TGG | 0.646953 | 8.4:+20572043 | None:intergenic |
| GGAAGTGATTTCCAAGAACG+AGG | 0.668709 | 8.4:+20571240 | None:intergenic |
| GCTGAATATGACAAGTACAA+AGG | 0.669807 | 8.4:-20571309 | MS.gene033230:CDS |
| GGACGGAGCCCCATTCCAAG+AGG | 0.670484 | 8.4:-20572172 | MS.gene033230:CDS |
| CATGTGTGAATCATGTTCCA+GGG | 0.675490 | 8.4:-20572060 | MS.gene033230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATCATTACAACTCTTAAT+AGG | + | chr8.4:20571776-20571795 | None:intergenic | 20.0% |
| !! | TTCTTTATTAAAATCACTTC+AGG | + | chr8.4:20572322-20572341 | None:intergenic | 20.0% |
| !!! | AACAACTTTTTGGAATTTAT+TGG | - | chr8.4:20571740-20571759 | MS.gene033230:CDS | 20.0% |
| !!! | TTTTCTATTAGAACTCATTT+GGG | - | chr8.4:20572202-20572221 | MS.gene033230:CDS | 20.0% |
| ! | AAATGCAGAATTTATTTGGA+CGG | - | chr8.4:20571409-20571428 | MS.gene033230:CDS | 25.0% |
| ! | TAATAAAGAAGAAGAGATGT+GGG | - | chr8.4:20572332-20572351 | MS.gene033230:CDS | 25.0% |
| ! | TGGTAAATGCAGAATTTATT+TGG | - | chr8.4:20571405-20571424 | MS.gene033230:CDS | 25.0% |
| ! | TTAATAAAGAAGAAGAGATG+TGG | - | chr8.4:20572331-20572350 | MS.gene033230:CDS | 25.0% |
| ! | TTCACAGTTTATCAAACAAT+CGG | - | chr8.4:20571131-20571150 | MS.gene033230:CDS | 25.0% |
| ! | TTTCTATTAGAACTCATTTG+GGG | - | chr8.4:20572203-20572222 | MS.gene033230:CDS | 25.0% |
| !! | CTTTTCTATTAGAACTCATT+TGG | - | chr8.4:20572201-20572220 | MS.gene033230:CDS | 25.0% |
| AGAATCAAACAAATGGATCA+TGG | - | chr8.4:20571683-20571702 | MS.gene033230:CDS | 30.0% | |
| ATCTAAGAAACTGTACTTCA+AGG | + | chr8.4:20571990-20572009 | None:intergenic | 30.0% | |
| CAGACTACAATTAGAAACAA+AGG | - | chr8.4:20571322-20571341 | MS.gene033230:CDS | 30.0% | |
| GTTAGTGGAATATATAGTGT+TGG | - | chr8.4:20572060-20572079 | MS.gene033230:CDS | 30.0% | |
| TATTTCTCTAAACGAAGTGA+TGG | - | chr8.4:20571716-20571735 | MS.gene033230:CDS | 30.0% | |
| ! | AAGTGATGGTAACAACTTTT+TGG | - | chr8.4:20571730-20571749 | MS.gene033230:CDS | 30.0% |
| !! | TACATAGCTTTGGGAAATAT+TGG | - | chr8.4:20571908-20571927 | MS.gene033230:CDS | 30.0% |
| AAACTGTACTTCAAGGTAAG+TGG | + | chr8.4:20571983-20572002 | None:intergenic | 35.0% | |
| AATTAAATCCTCGCGACAAA+TGG | + | chr8.4:20571870-20571889 | None:intergenic | 35.0% | |
| ACCTTATCATCAATCTCCAT+AGG | + | chr8.4:20572382-20572401 | None:intergenic | 35.0% | |
| AGCTGTCAGAATCAAACAAA+TGG | - | chr8.4:20571676-20571695 | MS.gene033230:CDS | 35.0% | |
| ATTAAATCCTCGCGACAAAT+GGG | + | chr8.4:20571869-20571888 | None:intergenic | 35.0% | |
| ATTAGAAACAAAGGAGCTGT+TGG | - | chr8.4:20571331-20571350 | MS.gene033230:CDS | 35.0% | |
| ATTCTTAAAGGACCCTGAAT+TGG | - | chr8.4:20572432-20572451 | MS.gene033230:CDS | 35.0% | |
| CCTAAAGCTTACATAGCTTT+GGG | - | chr8.4:20571899-20571918 | MS.gene033230:CDS | 35.0% | |
| GAATGTCAATAAAGTGATGC+TGG | - | chr8.4:20571385-20571404 | MS.gene033230:CDS | 35.0% | |
| GCTAGTAAGTAAGGATTTGA+AGG | + | chr8.4:20572035-20572054 | None:intergenic | 35.0% | |
| GCTGAATATGACAAGTACAA+AGG | - | chr8.4:20572289-20572308 | MS.gene033230:CDS | 35.0% | |
| GGAACGTGATCAATTCTTAA+AGG | - | chr8.4:20572420-20572439 | MS.gene033230:CDS | 35.0% | |
| GTTCAGAAGGAGGTTTATAA+TGG | - | chr8.4:20571467-20571486 | MS.gene033230:CDS | 35.0% | |
| TAACTCTCTGCTAGTAAGTA+AGG | + | chr8.4:20572044-20572063 | None:intergenic | 35.0% | |
| TCCTAAAGCTTACATAGCTT+TGG | - | chr8.4:20571898-20571917 | MS.gene033230:CDS | 35.0% | |
| TCTTAGATGCTGATCAGTAT+TGG | - | chr8.4:20572002-20572021 | MS.gene033230:CDS | 35.0% | |
| TCTTGGTTATGACCTGTATA+GGG | - | chr8.4:20572252-20572271 | MS.gene033230:CDS | 35.0% | |
| TTCATCCTCAAACAGATCAA+GGG | + | chr8.4:20572482-20572501 | None:intergenic | 35.0% | |
| TTCTTGGAAATCACTTCCTA+TGG | - | chr8.4:20572363-20572382 | MS.gene033230:CDS | 35.0% | |
| ! | AGACACATATTGGTTGTGTT+TGG | + | chr8.4:20571194-20571213 | None:intergenic | 35.0% |
| ! | ATATATAGTGTTGGATCTGG+AGG | - | chr8.4:20572069-20572088 | MS.gene033230:CDS | 35.0% |
| ! | ATGGAGATTGATGATAAGGT+TGG | - | chr8.4:20572382-20572401 | MS.gene033230:CDS | 35.0% |
| ! | CAGGCGTACTTTCTTTTATT+TGG | - | chr8.4:20571619-20571638 | MS.gene033230:CDS | 35.0% |
| ! | GGAATATATAGTGTTGGATC+TGG | - | chr8.4:20572066-20572085 | MS.gene033230:CDS | 35.0% |
| ! | TCCTATGGAGATTGATGATA+AGG | - | chr8.4:20572378-20572397 | MS.gene033230:CDS | 35.0% |
| !! | GCAGAAGTTGATATTACAGA+AGG | - | chr8.4:20571227-20571246 | MS.gene033230:CDS | 35.0% |
| ACATGTGTGAATCATGTTCC+AGG | - | chr8.4:20571537-20571556 | MS.gene033230:CDS | 40.0% | |
| ACTCAACAAGGTAAGACTGT+TGG | + | chr8.4:20571502-20571521 | None:intergenic | 40.0% | |
| ACTTACTAGCAGAGAGTTAG+TGG | - | chr8.4:20572045-20572064 | MS.gene033230:CDS | 40.0% | |
| AGCAATGCTGTTAGTAACCT+TGG | + | chr8.4:20571951-20571970 | None:intergenic | 40.0% | |
| AGTCAAAGTCAGTGTTCAGA+AGG | - | chr8.4:20571454-20571473 | MS.gene033230:CDS | 40.0% | |
| CAGACACTTCAGACACATAT+TGG | + | chr8.4:20571204-20571223 | None:intergenic | 40.0% | |
| CATGTGTGAATCATGTTCCA+GGG | - | chr8.4:20571538-20571557 | MS.gene033230:CDS | 40.0% | |
| CATTACTGTTAGCCCTATAC+AGG | + | chr8.4:20572267-20572286 | None:intergenic | 40.0% | |
| CCCAAAGCTATGTAAGCTTT+AGG | + | chr8.4:20571902-20571921 | None:intergenic | 40.0% | |
| CTCTTGGTTATGACCTGTAT+AGG | - | chr8.4:20572251-20572270 | MS.gene033230:CDS | 40.0% | |
| CTTCATCCTCAAACAGATCA+AGG | + | chr8.4:20572483-20572502 | None:intergenic | 40.0% | |
| TCTGTTTGAGGATGAAGATG+AGG | - | chr8.4:20572486-20572505 | MS.gene033230:CDS | 40.0% | |
| TGAAGATGAGGAGGATAACA+TGG | - | chr8.4:20572498-20572517 | MS.gene033230:CDS | 40.0% | |
| TGAATCCCTTGATCTGTTTG+AGG | - | chr8.4:20572474-20572493 | MS.gene033230:CDS | 40.0% | |
| TTAAATCCTCGCGACAAATG+GGG | + | chr8.4:20571868-20571887 | None:intergenic | 40.0% | |
| ! | AACGTTTTGTGCTGCAAATG+TGG | - | chr8.4:20571155-20571174 | MS.gene033230:CDS | 40.0% |
| ! | ACCTTGGTGCAAATCACAAT+AGG | + | chr8.4:20571935-20571954 | None:intergenic | 40.0% |
| ! | ACGTTTTGTGCTGCAAATGT+GGG | - | chr8.4:20571156-20571175 | MS.gene033230:CDS | 40.0% |
| ! | ACTTTTACCCTCTTGGAATG+GGG | + | chr8.4:20571437-20571456 | None:intergenic | 40.0% |
| ! | AGATGCTGATCAGTATTGGA+GGG | - | chr8.4:20572006-20572025 | MS.gene033230:CDS | 40.0% |
| ! | GACTTTTACCCTCTTGGAAT+GGG | + | chr8.4:20571438-20571457 | None:intergenic | 40.0% |
| ! | GAGGCTGTTTCATCTAAAGT+TGG | - | chr8.4:20572088-20572107 | MS.gene033230:CDS | 40.0% |
| ! | GGTCCATCTGAGATTACTAT+GGG | - | chr8.4:20572109-20572128 | MS.gene033230:CDS | 40.0% |
| ! | GGTTGGAGTTGATTACAACT+TGG | - | chr8.4:20572399-20572418 | MS.gene033230:CDS | 40.0% |
| ! | TAGATGCTGATCAGTATTGG+AGG | - | chr8.4:20572005-20572024 | MS.gene033230:CDS | 40.0% |
| ! | TCCTATTGTGATTTGCACCA+AGG | - | chr8.4:20571931-20571950 | MS.gene033230:CDS | 40.0% |
| ! | TGACTTTTACCCTCTTGGAA+TGG | + | chr8.4:20571439-20571458 | None:intergenic | 40.0% |
| ! | TGGTCCATCTGAGATTACTA+TGG | - | chr8.4:20572108-20572127 | MS.gene033230:CDS | 40.0% |
| !! | GACTTTGACTTTTACCCTCT+TGG | + | chr8.4:20571444-20571463 | None:intergenic | 40.0% |
| !!! | GTTGCTCGAGTTTTGGATTT+TGG | - | chr8.4:20572163-20572182 | MS.gene033230:CDS | 40.0% |
| ACAGGTCATAACCAAGAGCA+TGG | + | chr8.4:20572249-20572268 | None:intergenic | 45.0% | |
| CAAAGTCAGTGTTCAGAAGG+AGG | - | chr8.4:20571457-20571476 | MS.gene033230:CDS | 45.0% | |
| CCACCCATAGTAATCTCAGA+TGG | + | chr8.4:20572115-20572134 | None:intergenic | 45.0% | |
| CCATCAACTCCTCCAATTCA+GGG | + | chr8.4:20572447-20572466 | None:intergenic | 45.0% | |
| CCTGTTGAACGTACTCAACA+AGG | + | chr8.4:20571514-20571533 | None:intergenic | 45.0% | |
| CCTTGTTGAGTACGTTCAAC+AGG | - | chr8.4:20571511-20571530 | MS.gene033230:CDS | 45.0% | |
| CTTAAAGGACCCTGAATTGG+AGG | - | chr8.4:20572435-20572454 | MS.gene033230:CDS | 45.0% | |
| GGAAGTGATTTCCAAGAACG+AGG | + | chr8.4:20572361-20572380 | None:intergenic | 45.0% | |
| GTTTGAGGATGAAGATGAGG+AGG | - | chr8.4:20572489-20572508 | MS.gene033230:CDS | 45.0% | |
| TGTAGTCTGACCCAAGTTCT+TGG | + | chr8.4:20571311-20571330 | None:intergenic | 45.0% | |
| ! | CCATCTGAGATTACTATGGG+TGG | - | chr8.4:20572112-20572131 | MS.gene033230:CDS | 45.0% |
| !! | GAGCAGCTAATTCTGAAGCA+TGG | - | chr8.4:20571641-20571660 | MS.gene033230:CDS | 45.0% |
| !! | TGCTCAAGTTGCTCGAGTTT+TGG | - | chr8.4:20572156-20572175 | MS.gene033230:CDS | 45.0% |
| !!! | TTGGGGCATCTTTTAAAGCC+TGG | - | chr8.4:20572220-20572239 | MS.gene033230:CDS | 45.0% |
| ACAACTGCAACCCACTGATC+AGG | + | chr8.4:20571575-20571594 | None:intergenic | 50.0% | |
| ACTTGCAGCCACCAAGAACT+TGG | - | chr8.4:20571297-20571316 | MS.gene033230:CDS | 50.0% | |
| AGTCTGACCCAAGTTCTTGG+TGG | + | chr8.4:20571308-20571327 | None:intergenic | 50.0% | |
| CAACTGCAACCCACTGATCA+GGG | + | chr8.4:20571574-20571593 | None:intergenic | 50.0% | |
| CCCTGAATTGGAGGAGTTGA+TGG | - | chr8.4:20572444-20572463 | MS.gene033230:CDS | 50.0% | |
| CTTGCAGCCACCAAGAACTT+GGG | - | chr8.4:20571298-20571317 | MS.gene033230:CDS | 50.0% | |
| GCCATCAACTCCTCCAATTC+AGG | + | chr8.4:20572448-20572467 | None:intergenic | 50.0% | |
| TCAGGCAACATGTCTCTCAC+AGG | - | chr8.4:20571600-20571619 | MS.gene033230:CDS | 50.0% | |
| TGAATCATGTTCCAGGGTGC+AGG | - | chr8.4:20571544-20571563 | MS.gene033230:CDS | 50.0% | |
| ! | TAACCAAGAGCATGGTCACC+AGG | + | chr8.4:20572241-20572260 | None:intergenic | 50.0% |
| ! | TTGGTGGCTGCAAGTAGCTT+TGG | + | chr8.4:20571292-20571311 | None:intergenic | 50.0% |
| !! | CTGCAAGTAGCTTTGGCACA+CGG | + | chr8.4:20571285-20571304 | None:intergenic | 50.0% |
| !! | GAATTGGAGGAGTTGATGGC+TGG | - | chr8.4:20572448-20572467 | MS.gene033230:CDS | 50.0% |
| !! | TGCAAGTAGCTTTGGCACAC+GGG | + | chr8.4:20571284-20571303 | None:intergenic | 50.0% |
| AAGCCTGGTGACCATGCTCT+TGG | - | chr8.4:20572235-20572254 | MS.gene033230:CDS | 55.0% | |
| AATCAGCCCCATTTGTCGCG+AGG | - | chr8.4:20571859-20571878 | MS.gene033230:CDS | 55.0% | |
| GATGTGGGAAGCCTCGTTCT+TGG | - | chr8.4:20572347-20572366 | MS.gene033230:CDS | 55.0% | |
| GCAGGCTAACCCTGATCAGT+GGG | - | chr8.4:20571562-20571581 | MS.gene033230:CDS | 55.0% | |
| GGGTTGCAGTTGTGCAACTC+AGG | - | chr8.4:20571582-20571601 | MS.gene033230:CDS | 55.0% | |
| TGCAGGCTAACCCTGATCAG+TGG | - | chr8.4:20571561-20571580 | MS.gene033230:CDS | 55.0% | |
| !! | GCAAGTAGCTTTGGCACACG+GGG | + | chr8.4:20571283-20571302 | None:intergenic | 55.0% |
| GACGGAGCCCCATTCCAAGA+GGG | - | chr8.4:20571427-20571446 | MS.gene033230:CDS | 60.0% | |
| !! | ATCAGGGTTAGCCTGCACCC+TGG | + | chr8.4:20571558-20571577 | None:intergenic | 60.0% |
| GGACGGAGCCCCATTCCAAG+AGG | - | chr8.4:20571426-20571445 | MS.gene033230:CDS | 65.0% | |
| CGGGGCAATGCACGAGCACG+TGG | + | chr8.4:20571265-20571284 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 20571092 | 20572528 | 20571092 | ID=MS.gene033230 |
| chr8.4 | mRNA | 20571092 | 20572528 | 20571092 | ID=MS.gene033230.t1;Parent=MS.gene033230 |
| chr8.4 | exon | 20571092 | 20572528 | 20571092 | ID=MS.gene033230.t1.exon1;Parent=MS.gene033230.t1 |
| chr8.4 | CDS | 20571092 | 20572528 | 20571092 | ID=cds.MS.gene033230.t1;Parent=MS.gene033230.t1 |
| Gene Sequence |
| Protein sequence |
