Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033723.t1 | XP_003624512.1 | 98.4 | 244 | 4 | 0 | 2 | 245 | 30 | 273 | 5.40E-137 | 496.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033723.t1 | P51132 | 81.6 | 239 | 40 | 1 | 11 | 245 | 34 | 272 | 9.4e-114 | 411.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033723.t1 | G7KXA6 | 98.4 | 244 | 4 | 0 | 2 | 245 | 30 | 273 | 3.9e-137 | 496.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene033723 | MS.gene074111 | PPI |
| MS.gene074110 | MS.gene033723 | PPI |
| MS.gene033723 | MS.gene55486 | PPI |
| MS.gene47123 | MS.gene033723 | PPI |
| MS.gene55480 | MS.gene033723 | PPI |
| MS.gene47121 | MS.gene033723 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033723.t1 | MTR_7g084150 | 98.361 | 244 | 4 | 0 | 2 | 245 | 30 | 273 | 0.0 | 498 |
| MS.gene033723.t1 | MTR_3g082230 | 79.688 | 64 | 13 | 0 | 126 | 189 | 68 | 131 | 6.92e-28 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033723.t1 | AT5G13430 | 84.259 | 216 | 34 | 0 | 30 | 245 | 57 | 272 | 2.76e-139 | 392 |
| MS.gene033723.t1 | AT5G13440 | 83.796 | 216 | 35 | 0 | 30 | 245 | 59 | 274 | 4.02e-139 | 391 |
Find 80 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATCTCATTATGATATTTC+TGG | 0.147844 | 7.4:-22861078 | MS.gene033723:CDS |
| GAAACAGTTGCAGGAATTTC+AGG | 0.237158 | 7.4:+22861567 | None:intergenic |
| ATGATATTTCTGGCAGAATT+AGG | 0.242646 | 7.4:-22861068 | MS.gene033723:CDS |
| CCGATCACAACGAGCCATTC+TGG | 0.268480 | 7.4:+22861174 | None:intergenic |
| GGTACCAACTTATTCATTCT+TGG | 0.306788 | 7.4:-22861019 | MS.gene033723:CDS |
| AACAGATGACGATGTGAAAT+TGG | 0.317786 | 7.4:-22861259 | MS.gene033723:CDS |
| GATCGGTGTTTGCACACATC+TGG | 0.323690 | 7.4:-22861157 | MS.gene033723:CDS |
| TTCGCATACTTTGTCCTAAC+AGG | 0.331271 | 7.4:-22861459 | MS.gene033723:CDS |
| CTGAAGGGGAGAAAGAATTC+AGG | 0.347551 | 7.4:+22863373 | None:intergenic |
| GTGGAAGAAGGCGGTGGGAT+GGG | 0.349403 | 7.4:+22863433 | None:intergenic |
| GGGACCTGCACCATACAATT+TGG | 0.359660 | 7.4:-22861043 | MS.gene033723:CDS |
| TGCATTCCCTTGCCAAATGC+TGG | 0.381560 | 7.4:-22861132 | MS.gene033723:CDS |
| TGGAAGAAGGCGGTGGGATG+GGG | 0.385906 | 7.4:+22863434 | None:intergenic |
| CCGCCAAAGTCTCCAGCATT+TGG | 0.391956 | 7.4:+22861120 | None:intergenic |
| TCATATACAATCTTTGAAGA+TGG | 0.405797 | 7.4:+22861531 | None:intergenic |
| TTAACAGCAGAAACAGTTGC+AGG | 0.410008 | 7.4:+22861558 | None:intergenic |
| TTGCCAAATGCTGGAGACTT+TGG | 0.416842 | 7.4:-22861123 | MS.gene033723:CDS |
| GCCCTCTTGCTTGGATCACC+AGG | 0.425512 | 7.4:+22861483 | None:intergenic |
| GAATTCAGGGTGGATGGAAA+AGG | 0.437093 | 7.4:+22863387 | None:intergenic |
| TATGCGAATGCCCTCTTGCT+TGG | 0.442545 | 7.4:+22861474 | None:intergenic |
| AAACAAACCTTCCACCTGTT+AGG | 0.452175 | 7.4:+22861445 | None:intergenic |
| CCAAATGCTGGAGACTTTGG+CGG | 0.457248 | 7.4:-22861120 | MS.gene033723:CDS |
| GTGGAAAGCCAGTATTCATC+AGG | 0.460050 | 7.4:-22861287 | MS.gene033723:CDS |
| CGATCACAACGAGCCATTCT+GGG | 0.462447 | 7.4:+22861175 | None:intergenic |
| GCTCAGCATGTCCGCAAGTA+AGG | 0.463109 | 7.4:-22861385 | MS.gene033723:CDS |
| AATTCAGGGTGGATGGAAAA+GGG | 0.475500 | 7.4:+22863388 | None:intergenic |
| ACCTCCAAATTGTATGGTGC+AGG | 0.482330 | 7.4:+22861039 | None:intergenic |
| GTTCTGCGCCTGATGAATAC+TGG | 0.484039 | 7.4:+22861279 | None:intergenic |
| CAAACTTGAGGACAAGTAAA+CGG | 0.484302 | 7.4:+22861409 | None:intergenic |
| GGTGGAAGAAGGCGGTGGGA+TGG | 0.488335 | 7.4:+22863432 | None:intergenic |
| CACCAGGAGGAAACCGTTCA+TGG | 0.490179 | 7.4:+22861499 | None:intergenic |
| GTTGGTACCTCCAAATTGTA+TGG | 0.490642 | 7.4:+22861033 | None:intergenic |
| AGTAGTGCCTGGCTCAATGC+TGG | 0.496319 | 7.4:+22861326 | None:intergenic |
| AGATCTGCGTTGATCGGAGG+TGG | 0.496546 | 7.4:+22863414 | None:intergenic |
| ACCAACTTATTCATTCTTGG+AGG | 0.499770 | 7.4:-22861016 | MS.gene033723:CDS |
| TCCTCCAAGAATGAATAAGT+TGG | 0.514284 | 7.4:+22861015 | None:intergenic |
| GAGAAAGAATTCAGGGTGGA+TGG | 0.515260 | 7.4:+22863381 | None:intergenic |
| GGGAAAACACTTACCTCTGA+AGG | 0.518069 | 7.4:+22863357 | None:intergenic |
| AAGTAAGGATGTTCTTGCTA+TGG | 0.519506 | 7.4:-22861370 | MS.gene033723:CDS |
| AACCATGAACGGTTTCCTCC+TGG | 0.520987 | 7.4:-22861501 | MS.gene033723:CDS |
| CGTTGATCGGAGGTGGAAGA+AGG | 0.521939 | 7.4:+22863421 | None:intergenic |
| TCGGAGGTGGAAGAAGGCGG+TGG | 0.523668 | 7.4:+22863427 | None:intergenic |
| GAGGAAAACAAGTTGTTGAT+CGG | 0.524976 | 7.4:-22860997 | MS.gene033723:CDS |
| CCAGAATGGCTCGTTGTGAT+CGG | 0.536344 | 7.4:-22861174 | MS.gene033723:CDS |
| ATCGGTGTTTGCACACATCT+GGG | 0.542075 | 7.4:-22861156 | MS.gene033723:CDS |
| GATCTGTCCAGCATTGAGCC+AGG | 0.548945 | 7.4:-22861333 | MS.gene033723:CDS |
| GCACTACTGTCACTGTTAAG+TGG | 0.549316 | 7.4:-22861311 | MS.gene033723:CDS |
| CGGAGGTGGAAGAAGGCGGT+GGG | 0.553191 | 7.4:+22863428 | None:intergenic |
| TGAAGGGGAGAAAGAATTCA+GGG | 0.553314 | 7.4:+22863374 | None:intergenic |
| TATTTCTGGCAGAATTAGGA+AGG | 0.553507 | 7.4:-22861064 | MS.gene033723:CDS |
| CTCTCTCAGAATCTTGCTGA+GGG | 0.558977 | 7.4:+22861205 | None:intergenic |
| ATGCTGGAGACTTTGGCGGA+TGG | 0.561425 | 7.4:-22861116 | MS.gene033723:CDS |
| GGGGTCAGATCTGCGTTGAT+CGG | 0.562035 | 7.4:+22863408 | None:intergenic |
| GAATTCTTTCTCCCCTTCAG+AGG | 0.567157 | 7.4:-22863370 | MS.gene033723:intron |
| TTGGCAAACAGTGTTGATGT+TGG | 0.567703 | 7.4:-22861240 | MS.gene033723:CDS |
| ACTCTCTCAGAATCTTGCTG+AGG | 0.573430 | 7.4:+22861204 | None:intergenic |
| GGAAAACACTTACCTCTGAA+GGG | 0.576686 | 7.4:+22863358 | None:intergenic |
| TTAACAGTGACAGTAGTGCC+TGG | 0.588903 | 7.4:+22861315 | None:intergenic |
| GCATACTTTGTCCTAACAGG+TGG | 0.589727 | 7.4:-22861456 | MS.gene033723:CDS |
| ACTGTCACTGTTAAGTGGCG+TGG | 0.593737 | 7.4:-22861306 | MS.gene033723:CDS |
| TCATAATGAGATCCATGACA+TGG | 0.597841 | 7.4:+22861087 | None:intergenic |
| GTCAGATCTGCGTTGATCGG+AGG | 0.599812 | 7.4:+22863411 | None:intergenic |
| ATGATGAACACAACCATGAA+CGG | 0.601838 | 7.4:-22861512 | MS.gene033723:CDS |
| AAAGTCTCCAGCATTTGGCA+AGG | 0.607108 | 7.4:+22861125 | None:intergenic |
| ACTTTGTCCTAACAGGTGGA+AGG | 0.607644 | 7.4:-22861452 | MS.gene033723:CDS |
| AGAGAGTCAAGAACCCAGAA+TGG | 0.614301 | 7.4:-22861188 | MS.gene033723:CDS |
| ACCTGCACCATACAATTTGG+AGG | 0.619569 | 7.4:-22861040 | MS.gene033723:CDS |
| GAAAACACTTACCTCTGAAG+GGG | 0.626939 | 7.4:+22863359 | None:intergenic |
| ACATGCTGAGCACAAACTTG+AGG | 0.627184 | 7.4:+22861397 | None:intergenic |
| ATTCAGGGTGGATGGAAAAG+GGG | 0.632839 | 7.4:+22863389 | None:intergenic |
| AGCAAGAACATCCTTACTTG+CGG | 0.635054 | 7.4:+22861374 | None:intergenic |
| AAGTCTCCAGCATTTGGCAA+GGG | 0.635128 | 7.4:+22861126 | None:intergenic |
| ATTTCTGGCAGAATTAGGAA+GGG | 0.638657 | 7.4:-22861063 | MS.gene033723:CDS |
| CTCCTGGTGATCCAAGCAAG+AGG | 0.642258 | 7.4:-22861485 | MS.gene033723:CDS |
| TGATCGGAGGTGGAAGAAGG+CGG | 0.650837 | 7.4:+22863424 | None:intergenic |
| TCCTGGTGATCCAAGCAAGA+GGG | 0.654973 | 7.4:-22861484 | MS.gene033723:CDS |
| CATAATGAGATCCATGACAT+GGG | 0.657346 | 7.4:+22861088 | None:intergenic |
| GACAAGTAAACGGATCAAAG+AGG | 0.665826 | 7.4:+22861419 | None:intergenic |
| CTCTTGCTTGGATCACCAGG+AGG | 0.672619 | 7.4:+22861486 | None:intergenic |
| AGGGGAGAAAGAATTCAGGG+TGG | 0.779436 | 7.4:+22863377 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAAATTAAATCAATTAA+TGG | + | chr7.4:22862827-22862846 | None:intergenic | 10.0% |
| !!! | ATTTATATTTTTATCTAACT+AGG | - | chr7.4:22862794-22862813 | MS.gene033723:intron | 10.0% |
| !!! | CAACAAAAAATATTTTTTTT+AGG | + | chr7.4:22861511-22861530 | None:intergenic | 10.0% |
| !!! | TTTGTTAAATATTTTATAGA+TGG | - | chr7.4:22861606-22861625 | MS.gene033723:CDS | 10.0% |
| !!! | TTTTTATGATTTTCATTATT+TGG | - | chr7.4:22861295-22861314 | MS.gene033723:CDS | 10.0% |
| !! | AAAATATTTAACAAAATAGG+TGG | + | chr7.4:22861601-22861620 | None:intergenic | 15.0% |
| !!! | TAATGATAAAATGTTTTTTG+TGG | - | chr7.4:22861745-22861764 | MS.gene033723:intron | 15.0% |
| !!! | TTTAGTTGTTACTTTTTTAT+GGG | - | chr7.4:22861909-22861928 | MS.gene033723:intron | 15.0% |
| !!! | TTTTAGTTGTTACTTTTTTA+TGG | - | chr7.4:22861908-22861927 | MS.gene033723:intron | 15.0% |
| !! | AAGATAGCAATTTAGTATTA+TGG | + | chr7.4:22862310-22862329 | None:intergenic | 20.0% |
| !! | TTAGAAAACAACAGTTAATA+AGG | + | chr7.4:22861943-22861962 | None:intergenic | 20.0% |
| !!! | AATAGTTTTGCTATTCATTT+AGG | - | chr7.4:22862223-22862242 | MS.gene033723:intron | 20.0% |
| !!! | AATTTATGTGTTTAGGTTTT+CGG | - | chr7.4:22861322-22861341 | MS.gene033723:CDS | 20.0% |
| !!! | ACATAAATTACTTTTTTCCA+GGG | - | chr7.4:22861973-22861992 | MS.gene033723:intron | 20.0% |
| !!! | ATTTGATTCGTTTTATGTTA+GGG | - | chr7.4:22861207-22861226 | MS.gene033723:CDS | 20.0% |
| !!! | TACATAAATTACTTTTTTCC+AGG | - | chr7.4:22861972-22861991 | MS.gene033723:intron | 20.0% |
| ! | AAAAGACATGAATATAGGAA+TGG | - | chr7.4:22862169-22862188 | MS.gene033723:intron | 25.0% |
| ! | AAGTGTAAAGTAACTGATAA+GGG | + | chr7.4:22862068-22862087 | None:intergenic | 25.0% |
| ! | AATTATTCTATGTGTAGGTA+AGG | - | chr7.4:22862599-22862618 | MS.gene033723:intron | 25.0% |
| ! | ACCTTAAAAGACATGAATAT+AGG | - | chr7.4:22862164-22862183 | MS.gene033723:intron | 25.0% |
| ! | AGTTGCATATTATCTTACTT+TGG | - | chr7.4:22862688-22862707 | MS.gene033723:intron | 25.0% |
| ! | ATTAAACCAGAGTTTCAAAA+AGG | + | chr7.4:22861729-22861748 | None:intergenic | 25.0% |
| ! | ATTATGAACGAGGTATAATT+CGG | - | chr7.4:22861783-22861802 | MS.gene033723:intron | 25.0% |
| ! | GATCTATTAAGTTTGAATAG+AGG | + | chr7.4:22862644-22862663 | None:intergenic | 25.0% |
| ! | GCAATAATTATTCTATGTGT+AGG | - | chr7.4:22862594-22862613 | MS.gene033723:intron | 25.0% |
| ! | GTTGCATATTATCTTACTTT+GGG | - | chr7.4:22862689-22862708 | MS.gene033723:intron | 25.0% |
| ! | TAAAAAACTGCATGTTTAGT+TGG | - | chr7.4:22862400-22862419 | MS.gene033723:intron | 25.0% |
| ! | TAAGTGTAAAGTAACTGATA+AGG | + | chr7.4:22862069-22862088 | None:intergenic | 25.0% |
| ! | TGGTGATAATTTATGTGTTT+AGG | - | chr7.4:22861315-22861334 | MS.gene033723:CDS | 25.0% |
| ! | TGGTTATTGAATTGTTTAGT+TGG | - | chr7.4:22862420-22862439 | MS.gene033723:intron | 25.0% |
| ! | TTGCATATTATCTTACTTTG+GGG | - | chr7.4:22862690-22862709 | MS.gene033723:intron | 25.0% |
| !! | ATTTTAAACCATTATGAACG+AGG | - | chr7.4:22861773-22861792 | MS.gene033723:intron | 25.0% |
| !! | TAATTAGAAACAATTTTCCC+TGG | + | chr7.4:22861993-22862012 | None:intergenic | 25.0% |
| !! | TATCTATCTGTTCCATTTTA+TGG | - | chr7.4:22862520-22862539 | MS.gene033723:intron | 25.0% |
| !! | TCATATACAATCTTTGAAGA+TGG | + | chr7.4:22862941-22862960 | None:intergenic | 25.0% |
| !! | TCCTATATTCATGTCTTTTA+AGG | + | chr7.4:22862168-22862187 | None:intergenic | 25.0% |
| !!! | GATTTGATTCGTTTTATGTT+AGG | - | chr7.4:22861206-22861225 | MS.gene033723:CDS | 25.0% |
| !!! | TGACCCAAAATACTTTTTTA+GGG | - | chr7.4:22862445-22862464 | MS.gene033723:intron | 25.0% |
| !!! | TGTTAATTTTTTGCGCTATT+TGG | - | chr7.4:22861466-22861485 | MS.gene033723:CDS | 25.0% |
| !!! | TTGACCCAAAATACTTTTTT+AGG | - | chr7.4:22862444-22862463 | MS.gene033723:intron | 25.0% |
| AAAAGTTTCTTGTATCTGCA+CGG | + | chr7.4:22861678-22861697 | None:intergenic | 30.0% | |
| ATGACTATATCAAAACTGGA+AGG | - | chr7.4:22861845-22861864 | MS.gene033723:intron | 30.0% | |
| CATAGTAAAATAACAGGCAA+GGG | + | chr7.4:22861135-22861154 | None:intergenic | 30.0% | |
| CGCAAAAAATTAACATGCTT+CGG | + | chr7.4:22861461-22861480 | None:intergenic | 30.0% | |
| GAATTATACCTCGTTCATAA+TGG | + | chr7.4:22861784-22861803 | None:intergenic | 30.0% | |
| GGATCTCATTATGATATTTC+TGG | - | chr7.4:22863391-22863410 | MS.gene033723:CDS | 30.0% | |
| GTGTTTATTGTTGTGTATGA+AGG | - | chr7.4:22861267-22861286 | MS.gene033723:CDS | 30.0% | |
| TACACTTATGTACCAATGAA+AGG | - | chr7.4:22862081-22862100 | MS.gene033723:intron | 30.0% | |
| TCGTGATTCTCTACAATAAA+AGG | + | chr7.4:22861655-22861674 | None:intergenic | 30.0% | |
| TGACTATATCAAAACTGGAA+GGG | - | chr7.4:22861846-22861865 | MS.gene033723:intron | 30.0% | |
| TGCATATTATCTTACTTTGG+GGG | - | chr7.4:22862691-22862710 | MS.gene033723:intron | 30.0% | |
| TTCCATGACTATATCAAAAC+TGG | - | chr7.4:22861841-22861860 | MS.gene033723:intron | 30.0% | |
| ! | ATATATGTCTTTTTCCGTTG+TGG | - | chr7.4:22861544-22861563 | MS.gene033723:CDS | 30.0% |
| ! | TAAGGCTGATCTATTCTTTT+GGG | - | chr7.4:22862617-22862636 | MS.gene033723:intron | 30.0% |
| ! | TATATGTCTTTTTCCGTTGT+GGG | - | chr7.4:22861545-22861564 | MS.gene033723:CDS | 30.0% |
| !! | ATGATATTTCTGGCAGAATT+AGG | - | chr7.4:22863401-22863420 | MS.gene033723:CDS | 30.0% |
| !! | GATTTAATTTGATTGCATCC+AGG | - | chr7.4:22862833-22862852 | MS.gene033723:intron | 30.0% |
| !! | TTCCAGTTTTGATATAGTCA+TGG | + | chr7.4:22861846-22861865 | None:intergenic | 30.0% |
| !!! | CCACCCTAAAAAAGTATTTT+GGG | + | chr7.4:22862451-22862470 | None:intergenic | 30.0% |
| !!! | TAATGCTGTTTTCTTTTGTG+TGG | + | chr7.4:22862880-22862899 | None:intergenic | 30.0% |
| !!! | TCCACCCTAAAAAAGTATTT+TGG | + | chr7.4:22862452-22862471 | None:intergenic | 30.0% |
| !!! | TTATAGATGGTTTTGATTCG+TGG | - | chr7.4:22861619-22861638 | MS.gene033723:intron | 30.0% |
| AACAGATGACGATGTGAAAT+TGG | - | chr7.4:22863210-22863229 | MS.gene033723:intron | 35.0% | |
| AAGTAAGGATGTTCTTGCTA+TGG | - | chr7.4:22863099-22863118 | MS.gene033723:intron | 35.0% | |
| AATACTCTCTCACCTTTCAT+TGG | + | chr7.4:22862096-22862115 | None:intergenic | 35.0% | |
| ACCAACTTATTCATTCTTGG+AGG | - | chr7.4:22863453-22863472 | MS.gene033723:intron | 35.0% | |
| ACCAGAGGTAAACCATAAAA+TGG | + | chr7.4:22862535-22862554 | None:intergenic | 35.0% | |
| AGACATGAATATAGGAATGG+AGG | - | chr7.4:22862172-22862191 | MS.gene033723:intron | 35.0% | |
| ATATGAACATCCCAGAAGAT+TGG | + | chr7.4:22861356-22861375 | None:intergenic | 35.0% | |
| ATGATGAACACAACCATGAA+CGG | - | chr7.4:22862957-22862976 | MS.gene033723:intron | 35.0% | |
| CAAACTTGAGGACAAGTAAA+CGG | + | chr7.4:22863063-22863082 | None:intergenic | 35.0% | |
| CACTGCCATAGTAAAATAAC+AGG | + | chr7.4:22861141-22861160 | None:intergenic | 35.0% | |
| CATAATGAGATCCATGACAT+GGG | + | chr7.4:22863384-22863403 | None:intergenic | 35.0% | |
| CCATAGTAAAATAACAGGCA+AGG | + | chr7.4:22861136-22861155 | None:intergenic | 35.0% | |
| GACATGAATATAGGAATGGA+GGG | - | chr7.4:22862173-22862192 | MS.gene033723:intron | 35.0% | |
| GAGGAAAACAAGTTGTTGAT+CGG | - | chr7.4:22863472-22863491 | MS.gene033723:intron | 35.0% | |
| GGATTTGATTCCAATCTTCT+GGG | - | chr7.4:22861343-22861362 | MS.gene033723:CDS | 35.0% | |
| GGTACCAACTTATTCATTCT+TGG | - | chr7.4:22863450-22863469 | MS.gene033723:intron | 35.0% | |
| TCATAATGAGATCCATGACA+TGG | + | chr7.4:22863385-22863404 | None:intergenic | 35.0% | |
| TCCTCCAAGAATGAATAAGT+TGG | + | chr7.4:22863457-22863476 | None:intergenic | 35.0% | |
| ! | ATTATCTTACTTTGGGGGAT+TGG | - | chr7.4:22862696-22862715 | MS.gene033723:intron | 35.0% |
| ! | GTAAGGCTGATCTATTCTTT+TGG | - | chr7.4:22862616-22862635 | MS.gene033723:intron | 35.0% |
| ! | TCCATTTTATGGTTTACCTC+TGG | - | chr7.4:22862531-22862550 | MS.gene033723:intron | 35.0% |
| !! | ATTTCTGGCAGAATTAGGAA+GGG | - | chr7.4:22863406-22863425 | MS.gene033723:CDS | 35.0% |
| !! | TATTTCTGGCAGAATTAGGA+AGG | - | chr7.4:22863405-22863424 | MS.gene033723:CDS | 35.0% |
| !!! | CCCAAAATACTTTTTTAGGG+TGG | - | chr7.4:22862448-22862467 | MS.gene033723:intron | 35.0% |
| !!! | CCTTGCCTGTTATTTTACTA+TGG | - | chr7.4:22861133-22861152 | MS.gene033723:CDS | 35.0% |
| !!! | CTGTTATTTTACTATGGCAG+TGG | - | chr7.4:22861139-22861158 | MS.gene033723:CDS | 35.0% |
| AAACAAACCTTCCACCTGTT+AGG | + | chr7.4:22863027-22863046 | None:intergenic | 40.0% | |
| AATTCAGGGTGGATGGAAAA+GGG | + | chr7.4:22861084-22861103 | None:intergenic | 40.0% | |
| ACCAGAGTTTCAAAAAGGTG+AGG | + | chr7.4:22861724-22861743 | None:intergenic | 40.0% | |
| AGCAAGAACATCCTTACTTG+CGG | + | chr7.4:22863098-22863117 | None:intergenic | 40.0% | |
| ATTGTGCGTATGCTATTCGT+TGG | - | chr7.4:22862733-22862752 | MS.gene033723:intron | 40.0% | |
| CCAGAGTTTCAAAAAGGTGA+GGG | + | chr7.4:22861723-22861742 | None:intergenic | 40.0% | |
| CGGATTTGATTCCAATCTTC+TGG | - | chr7.4:22861342-22861361 | MS.gene033723:CDS | 40.0% | |
| GAAACAGTTGCAGGAATTTC+AGG | + | chr7.4:22862905-22862924 | None:intergenic | 40.0% | |
| GACAAGTAAACGGATCAAAG+AGG | + | chr7.4:22863053-22863072 | None:intergenic | 40.0% | |
| GATCAAATGATACAGACCAG+AGG | + | chr7.4:22862550-22862569 | None:intergenic | 40.0% | |
| GGAAAACACTTACCTCTGAA+GGG | + | chr7.4:22861114-22861133 | None:intergenic | 40.0% | |
| GTTGGTACCTCCAAATTGTA+TGG | + | chr7.4:22863439-22863458 | None:intergenic | 40.0% | |
| TGAAGGGGAGAAAGAATTCA+GGG | + | chr7.4:22861098-22861117 | None:intergenic | 40.0% | |
| TTAACAGCAGAAACAGTTGC+AGG | + | chr7.4:22862914-22862933 | None:intergenic | 40.0% | |
| TTCGCATACTTTGTCCTAAC+AGG | - | chr7.4:22863010-22863029 | MS.gene033723:intron | 40.0% | |
| TTGTGCGTATGCTATTCGTT+GGG | - | chr7.4:22862734-22862753 | MS.gene033723:intron | 40.0% | |
| ! | GAAAACACTTACCTCTGAAG+GGG | + | chr7.4:22861113-22861132 | None:intergenic | 40.0% |
| ! | GTGTGTTTGAAGTAGAATCG+AGG | - | chr7.4:22861399-22861418 | MS.gene033723:CDS | 40.0% |
| ! | GTTTGAAGTAGAATCGAGGA+TGG | - | chr7.4:22861403-22861422 | MS.gene033723:CDS | 40.0% |
| ! | TTGGGTTGTGTGTTAGTATG+AGG | - | chr7.4:22862752-22862771 | MS.gene033723:intron | 40.0% |
| !! | TTGGCAAACAGTGTTGATGT+TGG | - | chr7.4:22863229-22863248 | MS.gene033723:intron | 40.0% |
| AAAGTCTCCAGCATTTGGCA+AGG | + | chr7.4:22863347-22863366 | None:intergenic | 45.0% | |
| AAGTCTCCAGCATTTGGCAA+GGG | + | chr7.4:22863346-22863365 | None:intergenic | 45.0% | |
| ACATGCTGAGCACAAACTTG+AGG | + | chr7.4:22863075-22863094 | None:intergenic | 45.0% | |
| ACCTCCAAATTGTATGGTGC+AGG | + | chr7.4:22863433-22863452 | None:intergenic | 45.0% | |
| ACCTGCACCATACAATTTGG+AGG | - | chr7.4:22863429-22863448 | MS.gene033723:CDS | 45.0% | |
| ACTCTCTCAGAATCTTGCTG+AGG | + | chr7.4:22863268-22863287 | None:intergenic | 45.0% | |
| ACTTTGTCCTAACAGGTGGA+AGG | - | chr7.4:22863017-22863036 | MS.gene033723:intron | 45.0% | |
| AGAGAGTCAAGAACCCAGAA+TGG | - | chr7.4:22863281-22863300 | MS.gene033723:intron | 45.0% | |
| AGTGACTCAGTAGCAAAACC+TGG | + | chr7.4:22862854-22862873 | None:intergenic | 45.0% | |
| ATTCAGGGTGGATGGAAAAG+GGG | + | chr7.4:22861083-22861102 | None:intergenic | 45.0% | |
| CTCTCTCAGAATCTTGCTGA+GGG | + | chr7.4:22863267-22863286 | None:intergenic | 45.0% | |
| CTGAAGGGGAGAAAGAATTC+AGG | + | chr7.4:22861099-22861118 | None:intergenic | 45.0% | |
| GAATTCAGGGTGGATGGAAA+AGG | + | chr7.4:22861085-22861104 | None:intergenic | 45.0% | |
| GAATTCTTTCTCCCCTTCAG+AGG | - | chr7.4:22861099-22861118 | MS.gene033723:CDS | 45.0% | |
| GAGAAAGAATTCAGGGTGGA+TGG | + | chr7.4:22861091-22861110 | None:intergenic | 45.0% | |
| GCACTACTGTCACTGTTAAG+TGG | - | chr7.4:22863158-22863177 | MS.gene033723:intron | 45.0% | |
| GCATACTTTGTCCTAACAGG+TGG | - | chr7.4:22863013-22863032 | MS.gene033723:intron | 45.0% | |
| GGGAAAACACTTACCTCTGA+AGG | + | chr7.4:22861115-22861134 | None:intergenic | 45.0% | |
| GTGGAAAGCCAGTATTCATC+AGG | - | chr7.4:22863182-22863201 | MS.gene033723:intron | 45.0% | |
| GTTCTTAGAGAGGAAAGAGG+AGG | + | chr7.4:22861016-22861035 | None:intergenic | 45.0% | |
| TTAACAGTGACAGTAGTGCC+TGG | + | chr7.4:22863157-22863176 | None:intergenic | 45.0% | |
| TTGCAGTTCCAAACCCACAA+CGG | + | chr7.4:22861561-22861580 | None:intergenic | 45.0% | |
| TTGCCAAATGCTGGAGACTT+TGG | - | chr7.4:22863346-22863365 | MS.gene033723:intron | 45.0% | |
| ! | AAAGGTGAGGGAGCATGATT+TGG | + | chr7.4:22861711-22861730 | None:intergenic | 45.0% |
| ! | AAGGTGAGGGAGCATGATTT+GGG | + | chr7.4:22861710-22861729 | None:intergenic | 45.0% |
| ! | ATCGGTGTTTGCACACATCT+GGG | - | chr7.4:22863313-22863332 | MS.gene033723:intron | 45.0% |
| ! | GTCTTTTTCCGTTGTGGGTT+TGG | - | chr7.4:22861550-22861569 | MS.gene033723:CDS | 45.0% |
| !!! | CCCTCACCTTTTTGAAACTC+TGG | - | chr7.4:22861720-22861739 | MS.gene033723:intron | 45.0% |
| !! | TATAAAATATTTAACAAAAT+AGG | + | chr7.4:22861604-22861623 | None:intergenic | 5.0% |
| AACCATGAACGGTTTCCTCC+TGG | - | chr7.4:22862968-22862987 | MS.gene033723:intron | 50.0% | |
| ACTGTCACTGTTAAGTGGCG+TGG | - | chr7.4:22863163-22863182 | MS.gene033723:intron | 50.0% | |
| AGGGGAGAAAGAATTCAGGG+TGG | + | chr7.4:22861095-22861114 | None:intergenic | 50.0% | |
| CCAAATGCTGGAGACTTTGG+CGG | - | chr7.4:22863349-22863368 | MS.gene033723:intron | 50.0% | |
| CCAGAATGGCTCGTTGTGAT+CGG | - | chr7.4:22863295-22863314 | MS.gene033723:intron | 50.0% | |
| CGATCACAACGAGCCATTCT+GGG | + | chr7.4:22863297-22863316 | None:intergenic | 50.0% | |
| CTTAGAGAGGAAAGAGGAGG+CGG | + | chr7.4:22861013-22861032 | None:intergenic | 50.0% | |
| GGGACCTGCACCATACAATT+TGG | - | chr7.4:22863426-22863445 | MS.gene033723:CDS | 50.0% | |
| GGGGTTCTTAGAGAGGAAAG+AGG | + | chr7.4:22861019-22861038 | None:intergenic | 50.0% | |
| GTTCTGCGCCTGATGAATAC+TGG | + | chr7.4:22863193-22863212 | None:intergenic | 50.0% | |
| TATGCGAATGCCCTCTTGCT+TGG | + | chr7.4:22862998-22863017 | None:intergenic | 50.0% | |
| TCCTGGTGATCCAAGCAAGA+GGG | - | chr7.4:22862985-22863004 | MS.gene033723:intron | 50.0% | |
| TGCATTCCCTTGCCAAATGC+TGG | - | chr7.4:22863337-22863356 | MS.gene033723:intron | 50.0% | |
| ! | GATCGGTGTTTGCACACATC+TGG | - | chr7.4:22863312-22863331 | MS.gene033723:intron | 50.0% |
| !! | GGATGGTTTTGCCCATGTCA+TGG | - | chr7.4:22863370-22863389 | MS.gene033723:intron | 50.0% |
| AGTAGTGCCTGGCTCAATGC+TGG | + | chr7.4:22863146-22863165 | None:intergenic | 55.0% | |
| ATGCTGGAGACTTTGGCGGA+TGG | - | chr7.4:22863353-22863372 | MS.gene033723:intron | 55.0% | |
| CACCAGGAGGAAACCGTTCA+TGG | + | chr7.4:22862973-22862992 | None:intergenic | 55.0% | |
| CCGATCACAACGAGCCATTC+TGG | + | chr7.4:22863298-22863317 | None:intergenic | 55.0% | |
| CCGCCAAAGTCTCCAGCATT+TGG | + | chr7.4:22863352-22863371 | None:intergenic | 55.0% | |
| CGTTGATCGGAGGTGGAAGA+AGG | + | chr7.4:22861051-22861070 | None:intergenic | 55.0% | |
| CTCCTGGTGATCCAAGCAAG+AGG | - | chr7.4:22862984-22863003 | MS.gene033723:intron | 55.0% | |
| CTCTTGCTTGGATCACCAGG+AGG | + | chr7.4:22862986-22863005 | None:intergenic | 55.0% | |
| GCTCAGCATGTCCGCAAGTA+AGG | - | chr7.4:22863084-22863103 | MS.gene033723:intron | 55.0% | |
| GTGGGATGGGGTTCTTAGAG+AGG | + | chr7.4:22861026-22861045 | None:intergenic | 55.0% | |
| TGATCGGAGGTGGAAGAAGG+CGG | + | chr7.4:22861048-22861067 | None:intergenic | 55.0% | |
| ! | AGATCTGCGTTGATCGGAGG+TGG | + | chr7.4:22861058-22861077 | None:intergenic | 55.0% |
| ! | GATCTGTCCAGCATTGAGCC+AGG | - | chr7.4:22863136-22863155 | MS.gene033723:intron | 55.0% |
| ! | GGGGTCAGATCTGCGTTGAT+CGG | + | chr7.4:22861064-22861083 | None:intergenic | 55.0% |
| ! | GTCAGATCTGCGTTGATCGG+AGG | + | chr7.4:22861061-22861080 | None:intergenic | 55.0% |
| GCCCTCTTGCTTGGATCACC+AGG | + | chr7.4:22862989-22863008 | None:intergenic | 60.0% | |
| GTGGAAGAAGGCGGTGGGAT+GGG | + | chr7.4:22861039-22861058 | None:intergenic | 60.0% | |
| TGGAAGAAGGCGGTGGGATG+GGG | + | chr7.4:22861038-22861057 | None:intergenic | 60.0% | |
| AGAGGAAAGAGGAGGCGGCG+TGG | + | chr7.4:22861008-22861027 | None:intergenic | 65.0% | |
| CGGAGGTGGAAGAAGGCGGT+GGG | + | chr7.4:22861044-22861063 | None:intergenic | 65.0% | |
| GGTGGAAGAAGGCGGTGGGA+TGG | + | chr7.4:22861040-22861059 | None:intergenic | 65.0% | |
| TCGGAGGTGGAAGAAGGCGG+TGG | + | chr7.4:22861045-22861064 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 22860993 | 22863498 | 22860993 | ID=MS.gene033723 |
| chr7.4 | mRNA | 22860993 | 22863498 | 22860993 | ID=MS.gene033723.t1;Parent=MS.gene033723 |
| chr7.4 | exon | 22863493 | 22863498 | 22863493 | ID=MS.gene033723.t1.exon1;Parent=MS.gene033723.t1 |
| chr7.4 | CDS | 22863493 | 22863498 | 22863493 | ID=cds.MS.gene033723.t1;Parent=MS.gene033723.t1 |
| chr7.4 | exon | 22863371 | 22863458 | 22863371 | ID=MS.gene033723.t1.exon2;Parent=MS.gene033723.t1 |
| chr7.4 | CDS | 22863371 | 22863458 | 22863371 | ID=cds.MS.gene033723.t1;Parent=MS.gene033723.t1 |
| chr7.4 | exon | 22860993 | 22861636 | 22860993 | ID=MS.gene033723.t1.exon3;Parent=MS.gene033723.t1 |
| chr7.4 | CDS | 22860993 | 22861636 | 22860993 | ID=cds.MS.gene033723.t1;Parent=MS.gene033723.t1 |
| Gene Sequence |
| Protein sequence |
