Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033804.t1 | XP_013463888.2 | 96.3 | 348 | 13 | 0 | 1 | 348 | 1 | 348 | 6.80E-194 | 686.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033804.t1 | Q67YS6 | 71.3 | 328 | 91 | 1 | 21 | 348 | 19 | 343 | 2.4e-139 | 496.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033804.t1 | A0A396J6Y2 | 96.3 | 348 | 13 | 0 | 1 | 348 | 1 | 348 | 4.9e-194 | 686.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene033804 | MS.gene42752 | PPI |
MS.gene033804 | MS.gene068941 | PPI |
MS.gene033804 | MS.gene066879 | PPI |
MS.gene36100 | MS.gene033804 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033804.t1 | MTR_2g451450 | 96.677 | 331 | 11 | 0 | 1 | 331 | 1 | 331 | 0.0 | 666 |
MS.gene033804.t1 | MTR_2g451450 | 96.137 | 233 | 9 | 0 | 116 | 348 | 1 | 233 | 1.89e-169 | 471 |
MS.gene033804.t1 | MTR_2g067760 | 60.550 | 327 | 128 | 1 | 17 | 343 | 18 | 343 | 9.47e-146 | 416 |
MS.gene033804.t1 | MTR_7g086110 | 57.547 | 318 | 133 | 1 | 30 | 345 | 5 | 322 | 5.96e-136 | 390 |
MS.gene033804.t1 | MTR_2g101400 | 53.488 | 344 | 155 | 2 | 1 | 343 | 2 | 341 | 8.35e-132 | 380 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033804.t1 | AT5G46150 | 71.341 | 328 | 91 | 1 | 21 | 348 | 19 | 343 | 8.84e-175 | 489 |
MS.gene033804.t1 | AT5G46150 | 71.341 | 328 | 91 | 1 | 21 | 348 | 19 | 343 | 8.84e-175 | 489 |
MS.gene033804.t1 | AT5G46150 | 71.704 | 311 | 88 | 0 | 21 | 331 | 19 | 329 | 2.38e-167 | 469 |
MS.gene033804.t1 | AT1G54320 | 63.057 | 314 | 115 | 1 | 30 | 343 | 32 | 344 | 4.41e-147 | 419 |
MS.gene033804.t1 | AT3G12740 | 61.610 | 323 | 123 | 1 | 21 | 343 | 24 | 345 | 2.31e-145 | 415 |
MS.gene033804.t1 | AT1G16360 | 58.235 | 340 | 137 | 2 | 6 | 345 | 12 | 346 | 7.08e-143 | 408 |
MS.gene033804.t1 | AT1G79450 | 61.076 | 316 | 122 | 1 | 30 | 345 | 32 | 346 | 1.21e-142 | 408 |
MS.gene033804.t1 | AT1G16360 | 60.759 | 316 | 123 | 1 | 30 | 345 | 18 | 332 | 7.90e-141 | 402 |
MS.gene033804.t1 | AT1G16360 | 61.921 | 302 | 114 | 1 | 30 | 331 | 18 | 318 | 4.04e-136 | 391 |
MS.gene033804.t1 | AT1G79450 | 60.806 | 273 | 106 | 1 | 73 | 345 | 8 | 279 | 5.87e-121 | 350 |
MS.gene033804.t1 | AT5G46150 | 71.163 | 215 | 62 | 0 | 21 | 235 | 19 | 233 | 3.73e-118 | 342 |
MS.gene033804.t1 | AT1G16360 | 57.488 | 207 | 87 | 1 | 30 | 236 | 18 | 223 | 2.50e-83 | 253 |
MS.gene033804.t1 | AT1G16360 | 57.488 | 207 | 87 | 1 | 30 | 236 | 18 | 223 | 2.50e-83 | 253 |
Find 71 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAATTGTTCGCGATTCTTAA+AGG | 0.222184 | 2.3:+41226277 | MS.gene033804:CDS |
AGTGACCGCGATCACAAATT+TGG | 0.274721 | 2.3:+41231373 | MS.gene033804:CDS |
AACTATAACACTTACAGTTT+TGG | 0.277294 | 2.3:+41232291 | MS.gene033804:CDS |
CATCAGAATTGAAGGTTAAT+AGG | 0.289748 | 2.3:+41231332 | MS.gene033804:CDS |
CATTGCTACATTTCTGTTGA+TGG | 0.298958 | 2.3:+41226012 | MS.gene033804:CDS |
TTGTTACTTCTATATTCTTC+AGG | 0.312194 | 2.3:-41226221 | None:intergenic |
ATTGATCTCCATCATCTTCC+TGG | 0.339815 | 2.3:+41232410 | MS.gene033804:CDS |
CGATCACAAATTTGGAAAAC+AGG | 0.350003 | 2.3:+41231381 | MS.gene033804:CDS |
ATCCTTACCGTCGATGGTTC+TGG | 0.362441 | 2.3:-41230026 | None:intergenic |
CGGTAAAATAGAAGAGGATT+TGG | 0.362798 | 2.3:+41232233 | MS.gene033804:CDS |
ATCAAGAAGATCTCATAGTA+TGG | 0.385569 | 2.3:+41232172 | MS.gene033804:CDS |
TTTCAAAATGGTACCTTGAC+TGG | 0.399882 | 2.3:+41231418 | MS.gene033804:CDS |
GGAATTGCTAATTTATTTGT+CGG | 0.411974 | 2.3:+41232375 | MS.gene033804:CDS |
AGCTGATAATAGATATAAAT+CGG | 0.425228 | 2.3:-41229991 | None:intergenic |
TCTATCAACATCTAGCTGGC+TGG | 0.427638 | 2.3:+41232332 | MS.gene033804:CDS |
CCATGTCGTGCAGGGCGTCC+TGG | 0.428820 | 2.3:-41225011 | None:intergenic |
ATTGCTACATTTCTGTTGAT+GGG | 0.429654 | 2.3:+41226013 | MS.gene033804:CDS |
ATCAATCCACAAGGTACAAT+AGG | 0.435357 | 2.3:-41231265 | None:intergenic |
AACTAACTGCTGCAGGTGTA+AGG | 0.453844 | 2.3:-41225909 | None:intergenic |
CTATCAACATCTAGCTGGCT+GGG | 0.463891 | 2.3:+41232333 | MS.gene033804:CDS |
CTATTAACCTTCAATTCTGA+TGG | 0.472032 | 2.3:-41231331 | None:intergenic |
AACTCACCTCCATGTCGTGC+AGG | 0.474371 | 2.3:-41225020 | None:intergenic |
CGAAGTGTAACAAGTCCAAC+AGG | 0.485312 | 2.3:-41226049 | None:intergenic |
ACAGGTGCACGGACAACTCC+AGG | 0.494796 | 2.3:+41224993 | MS.gene033804:CDS |
GAGTAGACCGTGTCCCCATA+AGG | 0.498211 | 2.3:-41233037 | None:intergenic |
CAGCAGCTCGTACATGGACT+CGG | 0.499399 | 2.3:+41231193 | MS.gene033804:CDS |
AGTGATCAGCAGCTCGTACA+TGG | 0.501244 | 2.3:+41231187 | MS.gene033804:CDS |
CTCTAAAGGTCTACAAGGAC+TGG | 0.508713 | 2.3:-41231227 | None:intergenic |
TCGTGGACCATCAGAATTGA+AGG | 0.510361 | 2.3:+41231324 | MS.gene033804:CDS |
ATGAAGCACCAGGAAGATGA+TGG | 0.517697 | 2.3:-41232418 | None:intergenic |
GATGGAGATCAATATACTAA+AGG | 0.518103 | 2.3:-41232400 | None:intergenic |
GGAAAAGAACTAACTGCTGC+AGG | 0.521706 | 2.3:-41225916 | None:intergenic |
CCAGGACGCCCTGCACGACA+TGG | 0.528691 | 2.3:+41225011 | MS.gene033804:CDS |
ACCGTACAACTTTCGGAAGG+TGG | 0.529549 | 2.3:-41232214 | None:intergenic |
TACCTTGTGGATTGATAGCA+TGG | 0.531566 | 2.3:+41231272 | MS.gene033804:CDS |
GATCTTCCTATTGTACCTTG+TGG | 0.534128 | 2.3:+41231259 | MS.gene033804:CDS |
TGTCCGTGCACCTGTGCTGA+TGG | 0.537799 | 2.3:-41224985 | None:intergenic |
CCCACCTTCCGAAAGTTGTA+CGG | 0.540007 | 2.3:+41232213 | MS.gene033804:CDS |
GATGTAGGTTGTTGAAATTG+TGG | 0.550572 | 2.3:+41226175 | MS.gene033804:intron |
TCGGTACTTACTGGAATACT+AGG | 0.551282 | 2.3:-41231457 | None:intergenic |
TTGTTCTATCAACATCTAGC+TGG | 0.552699 | 2.3:+41232328 | MS.gene033804:CDS |
CAGCTTTGCACCTCCAGTCA+AGG | 0.557989 | 2.3:-41231431 | None:intergenic |
CAAATAAATTAGCAATTCCA+AGG | 0.570864 | 2.3:-41232371 | None:intergenic |
GTAAGGACAGGTTTACATGC+TGG | 0.572320 | 2.3:-41225892 | None:intergenic |
TTAATAGGAAAGGCATTGCA+TGG | 0.573955 | 2.3:+41231347 | MS.gene033804:CDS |
AGATCATTAGAAGACTCTAA+AGG | 0.574000 | 2.3:-41231241 | None:intergenic |
TGCTTCATATGAAAAGTCCT+AGG | 0.579232 | 2.3:+41232433 | MS.gene033804:CDS |
GAATTGAAGGTTAATAGGAA+AGG | 0.587031 | 2.3:+41231337 | MS.gene033804:CDS |
CCGTACAACTTTCGGAAGGT+GGG | 0.587134 | 2.3:-41232213 | None:intergenic |
ATCGGCGCTCTCATTGACTT+AGG | 0.587228 | 2.3:-41229973 | None:intergenic |
GTTGTACGGTAAAATAGAAG+AGG | 0.588169 | 2.3:+41232227 | MS.gene033804:CDS |
AAGATCTCATAGTATGGATG+CGG | 0.588194 | 2.3:+41232178 | MS.gene033804:CDS |
CAAAATGGTACCTTGACTGG+AGG | 0.588617 | 2.3:+41231421 | MS.gene033804:CDS |
AGTTCATCAACCATCAGCAC+AGG | 0.601565 | 2.3:+41224975 | MS.gene033804:CDS |
CTCCATGCTATCAATCCACA+AGG | 0.605947 | 2.3:-41231274 | None:intergenic |
ACTGCTGCAGGTGTAAGGAC+AGG | 0.608324 | 2.3:-41225904 | None:intergenic |
ACTCACCTCCATGTCGTGCA+GGG | 0.622234 | 2.3:-41225019 | None:intergenic |
GGGACACGGTCTACTCAACA+TGG | 0.623879 | 2.3:+41233044 | MS.gene033804:CDS |
CAACCATCAGCACAGGTGCA+CGG | 0.624161 | 2.3:+41224982 | MS.gene033804:CDS |
GAAGACTCTAAAGGTCTACA+AGG | 0.624493 | 2.3:-41231232 | None:intergenic |
TTTACCGTACAACTTTCGGA+AGG | 0.635260 | 2.3:-41232217 | None:intergenic |
GGACAGGTTTACATGCTGGA+AGG | 0.643420 | 2.3:-41225888 | None:intergenic |
ATGCAGACCTTATGGGGACA+CGG | 0.649450 | 2.3:+41233030 | MS.gene033804:intron |
TAGTGATGGATGTCGATGGA+GGG | 0.661999 | 2.3:+41224952 | None:intergenic |
GCTGTAGTGATGGATGTCGA+TGG | 0.672053 | 2.3:+41224948 | None:intergenic |
TCAACATCTAGCTGGCTGGG+TGG | 0.687856 | 2.3:+41232336 | MS.gene033804:CDS |
ACTATTACCAGAACCATCGA+CGG | 0.690341 | 2.3:+41230019 | MS.gene033804:CDS |
GTAGTGATGGATGTCGATGG+AGG | 0.693306 | 2.3:+41224951 | None:intergenic |
GGACGCCCTGCACGACATGG+AGG | 0.695799 | 2.3:+41225014 | MS.gene033804:CDS |
GATACATACAAATTCCGTCG+TGG | 0.699029 | 2.3:+41231307 | MS.gene033804:CDS |
TCAATTCTGATGGTCCACGA+CGG | 0.712783 | 2.3:-41231321 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 41224957 | 41233090 | 41224957 | ID=MS.gene033804 |
chr2.3 | mRNA | 41224957 | 41233090 | 41224957 | ID=MS.gene033804.t1;Parent=MS.gene033804 |
chr2.3 | exon | 41224957 | 41225035 | 41224957 | ID=MS.gene033804.t1.exon1;Parent=MS.gene033804.t1 |
chr2.3 | CDS | 41224957 | 41225035 | 41224957 | ID=cds.MS.gene033804.t1;Parent=MS.gene033804.t1 |
chr2.3 | exon | 41225863 | 41225924 | 41225863 | ID=MS.gene033804.t1.exon2;Parent=MS.gene033804.t1 |
chr2.3 | CDS | 41225863 | 41225924 | 41225863 | ID=cds.MS.gene033804.t1;Parent=MS.gene033804.t1 |
chr2.3 | exon | 41226010 | 41226084 | 41226010 | ID=MS.gene033804.t1.exon3;Parent=MS.gene033804.t1 |
chr2.3 | CDS | 41226010 | 41226084 | 41226010 | ID=cds.MS.gene033804.t1;Parent=MS.gene033804.t1 |
chr2.3 | exon | 41226182 | 41226298 | 41226182 | ID=MS.gene033804.t1.exon4;Parent=MS.gene033804.t1 |
chr2.3 | CDS | 41226182 | 41226298 | 41226182 | ID=cds.MS.gene033804.t1;Parent=MS.gene033804.t1 |
chr2.3 | exon | 41229970 | 41230040 | 41229970 | ID=MS.gene033804.t1.exon5;Parent=MS.gene033804.t1 |
chr2.3 | CDS | 41229970 | 41230040 | 41229970 | ID=cds.MS.gene033804.t1;Parent=MS.gene033804.t1 |
chr2.3 | exon | 41231171 | 41231468 | 41231171 | ID=MS.gene033804.t1.exon6;Parent=MS.gene033804.t1 |
chr2.3 | CDS | 41231171 | 41231468 | 41231171 | ID=cds.MS.gene033804.t1;Parent=MS.gene033804.t1 |
chr2.3 | exon | 41232165 | 41232454 | 41232165 | ID=MS.gene033804.t1.exon7;Parent=MS.gene033804.t1 |
chr2.3 | CDS | 41232165 | 41232454 | 41232165 | ID=cds.MS.gene033804.t1;Parent=MS.gene033804.t1 |
chr2.3 | exon | 41233036 | 41233090 | 41233036 | ID=MS.gene033804.t1.exon8;Parent=MS.gene033804.t1 |
chr2.3 | CDS | 41233036 | 41233090 | 41233036 | ID=cds.MS.gene033804.t1;Parent=MS.gene033804.t1 |
Gene Sequence |
Protein sequence |