Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36100.t1 | RHN40641.1 | 98.2 | 341 | 6 | 0 | 1 | 341 | 1 | 341 | 1.20E-190 | 675.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36100.t1 | Q9SLK2 | 75.5 | 327 | 79 | 1 | 15 | 340 | 22 | 348 | 9.6e-141 | 501.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36100.t1 | A0A396GKC1 | 98.2 | 341 | 6 | 0 | 1 | 341 | 1 | 341 | 8.5e-191 | 675.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene36100 | 0.829539 | 4.86E-55 | -1.69E-46 |
| MS.gene04919 | MS.gene36100 | 0.829921 | 3.93E-55 | -1.69E-46 |
| MS.gene04920 | MS.gene36100 | 0.838153 | 3.41E-57 | -1.69E-46 |
| MS.gene049283 | MS.gene36100 | 0.875381 | 3.22E-68 | -1.69E-46 |
| MS.gene049419 | MS.gene36100 | -0.824433 | 8.09E-54 | -1.69E-46 |
| MS.gene049499 | MS.gene36100 | 0.86068 | 1.74E-63 | -1.69E-46 |
| MS.gene049680 | MS.gene36100 | 0.820802 | 5.66E-53 | -1.69E-46 |
| MS.gene049983 | MS.gene36100 | 0.837014 | 6.67E-57 | -1.69E-46 |
| MS.gene04998 | MS.gene36100 | 0.831679 | 1.46E-55 | -1.69E-46 |
| MS.gene050359 | MS.gene36100 | 0.811855 | 5.68E-51 | -1.69E-46 |
| MS.gene050414 | MS.gene36100 | 0.848338 | 6.53E-60 | -1.69E-46 |
| MS.gene050559 | MS.gene36100 | 0.802785 | 4.76E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene36100 | 0.852686 | 3.92E-61 | -1.69E-46 |
| MS.gene050654 | MS.gene36100 | 0.807289 | 5.44E-50 | -1.69E-46 |
| MS.gene050945 | MS.gene36100 | 0.835706 | 1.44E-56 | -1.69E-46 |
| MS.gene051043 | MS.gene36100 | 0.859496 | 3.97E-63 | -1.69E-46 |
| MS.gene051154 | MS.gene36100 | 0.838394 | 2.95E-57 | -1.69E-46 |
| MS.gene051184 | MS.gene36100 | 0.800562 | 1.36E-48 | -1.69E-46 |
| MS.gene051699 | MS.gene36100 | 0.866535 | 2.66E-65 | -1.69E-46 |
| MS.gene051959 | MS.gene36100 | 0.822376 | 2.45E-53 | -1.69E-46 |
| MS.gene051960 | MS.gene36100 | 0.823396 | 1.42E-53 | -1.69E-46 |
| MS.gene052016 | MS.gene36100 | 0.816624 | 5.02E-52 | -1.69E-46 |
| MS.gene052040 | MS.gene36100 | 0.820592 | 6.32E-53 | -1.69E-46 |
| MS.gene052072 | MS.gene36100 | 0.80235 | 5.85E-49 | -1.69E-46 |
| MS.gene052118 | MS.gene36100 | 0.817829 | 2.69E-52 | -1.69E-46 |
| MS.gene052296 | MS.gene36100 | 0.811758 | 5.96E-51 | -1.69E-46 |
| MS.gene052533 | MS.gene36100 | 0.842468 | 2.54E-58 | -1.69E-46 |
| MS.gene052685 | MS.gene36100 | 0.802255 | 6.12E-49 | -1.69E-46 |
| MS.gene052793 | MS.gene36100 | 0.813451 | 2.54E-51 | -1.69E-46 |
| MS.gene053272 | MS.gene36100 | -0.802377 | 5.77E-49 | -1.69E-46 |
| MS.gene053298 | MS.gene36100 | 0.801695 | 7.98E-49 | -1.69E-46 |
| MS.gene053726 | MS.gene36100 | 0.818341 | 2.06E-52 | -1.69E-46 |
| MS.gene053879 | MS.gene36100 | 0.835898 | 1.28E-56 | -1.69E-46 |
| MS.gene053931 | MS.gene36100 | 0.805999 | 1.02E-49 | -1.69E-46 |
| MS.gene053963 | MS.gene36100 | 0.821312 | 4.32E-53 | -1.69E-46 |
| MS.gene054178 | MS.gene36100 | 0.812497 | 4.12E-51 | -1.69E-46 |
| MS.gene054222 | MS.gene36100 | 0.819265 | 1.27E-52 | -1.69E-46 |
| MS.gene054413 | MS.gene36100 | 0.812574 | 3.96E-51 | -1.69E-46 |
| MS.gene05454 | MS.gene36100 | 0.80212 | 6.52E-49 | -1.69E-46 |
| MS.gene054641 | MS.gene36100 | 0.805818 | 1.11E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene36100 | 0.884279 | 2.20E-71 | -1.69E-46 |
| MS.gene054893 | MS.gene36100 | 0.887323 | 1.58E-72 | -1.69E-46 |
| MS.gene054957 | MS.gene36100 | 0.838252 | 3.21E-57 | -1.69E-46 |
| MS.gene055147 | MS.gene36100 | 0.801247 | 9.85E-49 | -1.69E-46 |
| MS.gene055150 | MS.gene36100 | 0.849088 | 4.05E-60 | -1.69E-46 |
| MS.gene055229 | MS.gene36100 | 0.803506 | 3.37E-49 | -1.69E-46 |
| MS.gene055864 | MS.gene36100 | 0.809976 | 1.45E-50 | -1.69E-46 |
| MS.gene05624 | MS.gene36100 | 0.835854 | 1.32E-56 | -1.69E-46 |
| MS.gene056363 | MS.gene36100 | 0.806125 | 9.57E-50 | -1.69E-46 |
| MS.gene056677 | MS.gene36100 | 0.810499 | 1.12E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene36100 | 0.84736 | 1.21E-59 | -1.69E-46 |
| MS.gene057102 | MS.gene36100 | 0.837597 | 4.73E-57 | -1.69E-46 |
| MS.gene057174 | MS.gene36100 | 0.867887 | 9.83E-66 | -1.69E-46 |
| MS.gene057208 | MS.gene36100 | 0.810979 | 8.80E-51 | -1.69E-46 |
| MS.gene057622 | MS.gene36100 | 0.849592 | 2.93E-60 | -1.69E-46 |
| MS.gene058095 | MS.gene36100 | 0.84736 | 1.21E-59 | -1.69E-46 |
| MS.gene058159 | MS.gene36100 | 0.855809 | 4.92E-62 | -1.69E-46 |
| MS.gene058429 | MS.gene36100 | 0.817475 | 3.23E-52 | -1.69E-46 |
| MS.gene058592 | MS.gene36100 | 0.804712 | 1.89E-49 | -1.69E-46 |
| MS.gene058781 | MS.gene36100 | 0.818548 | 1.85E-52 | -1.69E-46 |
| MS.gene05878 | MS.gene36100 | 0.847905 | 8.60E-60 | -1.69E-46 |
| MS.gene05952 | MS.gene36100 | 0.892583 | 1.39E-74 | -1.69E-46 |
| MS.gene05956 | MS.gene36100 | 0.828924 | 6.86E-55 | -1.69E-46 |
| MS.gene05985 | MS.gene36100 | -0.857898 | 1.19E-62 | -1.69E-46 |
| MS.gene059901 | MS.gene36100 | -0.80823 | 3.43E-50 | -1.69E-46 |
| MS.gene06023 | MS.gene36100 | 0.838172 | 3.37E-57 | -1.69E-46 |
| MS.gene060259 | MS.gene36100 | 0.852326 | 4.97E-61 | -1.69E-46 |
| MS.gene060412 | MS.gene36100 | 0.82712 | 1.86E-54 | -1.69E-46 |
| MS.gene060413 | MS.gene36100 | 0.8358 | 1.36E-56 | -1.69E-46 |
| MS.gene060435 | MS.gene36100 | 0.825495 | 4.54E-54 | -1.69E-46 |
| MS.gene060522 | MS.gene36100 | 0.836644 | 8.29E-57 | -1.69E-46 |
| MS.gene060785 | MS.gene36100 | 0.812864 | 3.42E-51 | -1.69E-46 |
| MS.gene060933 | MS.gene36100 | 0.867817 | 1.03E-65 | -1.69E-46 |
| MS.gene060935 | MS.gene36100 | 0.84785 | 8.91E-60 | -1.69E-46 |
| MS.gene060937 | MS.gene36100 | 0.862652 | 4.35E-64 | -1.69E-46 |
| MS.gene061100 | MS.gene36100 | 0.818884 | 1.55E-52 | -1.69E-46 |
| MS.gene061188 | MS.gene36100 | 0.809244 | 2.08E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene36100 | MS.gene78497 | PPI |
| MS.gene36100 | MS.gene066879 | PPI |
| MS.gene36100 | MS.gene068941 | PPI |
| MS.gene36100 | MS.gene69865 | PPI |
| MS.gene36100 | MS.gene42752 | PPI |
| MS.gene36100 | MS.gene036314 | PPI |
| MS.gene36100 | MS.gene033804 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36100.t1 | MTR_2g067760 | 78.979 | 333 | 69 | 1 | 10 | 341 | 16 | 348 | 0.0 | 546 |
| MS.gene36100.t1 | MTR_2g101400 | 62.242 | 339 | 125 | 3 | 3 | 338 | 5 | 343 | 9.03e-156 | 441 |
| MS.gene36100.t1 | MTR_7g086110 | 62.893 | 318 | 114 | 4 | 24 | 337 | 4 | 321 | 2.97e-147 | 418 |
| MS.gene36100.t1 | MTR_2g451450 | 59.077 | 325 | 131 | 2 | 2 | 324 | 7 | 331 | 6.00e-141 | 402 |
| MS.gene36100.t1 | MTR_2g451450 | 65.351 | 228 | 79 | 0 | 109 | 336 | 1 | 228 | 1.05e-108 | 317 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36100.t1 | AT1G54320 | 75.305 | 328 | 80 | 1 | 15 | 341 | 22 | 349 | 0.0 | 520 |
| MS.gene36100.t1 | AT3G12740 | 73.780 | 328 | 85 | 1 | 15 | 341 | 23 | 350 | 0.0 | 517 |
| MS.gene36100.t1 | AT1G16360 | 65.407 | 344 | 114 | 2 | 2 | 340 | 5 | 348 | 5.90e-172 | 482 |
| MS.gene36100.t1 | AT1G79450 | 69.113 | 327 | 100 | 1 | 15 | 340 | 22 | 348 | 6.37e-172 | 481 |
| MS.gene36100.t1 | AT1G16360 | 67.610 | 318 | 102 | 1 | 24 | 340 | 17 | 334 | 5.97e-166 | 466 |
| MS.gene36100.t1 | AT1G16360 | 66.447 | 304 | 101 | 1 | 24 | 326 | 17 | 320 | 1.98e-154 | 437 |
| MS.gene36100.t1 | AT1G79450 | 70.073 | 274 | 81 | 1 | 68 | 340 | 8 | 281 | 2.76e-143 | 406 |
| MS.gene36100.t1 | AT5G46150 | 56.535 | 329 | 138 | 3 | 10 | 336 | 13 | 338 | 3.07e-136 | 391 |
| MS.gene36100.t1 | AT5G46150 | 56.535 | 329 | 138 | 3 | 10 | 336 | 13 | 338 | 3.07e-136 | 391 |
| MS.gene36100.t1 | AT5G46150 | 57.098 | 317 | 134 | 2 | 10 | 324 | 13 | 329 | 2.85e-134 | 385 |
| MS.gene36100.t1 | AT1G16360 | 61.836 | 207 | 78 | 1 | 24 | 229 | 17 | 223 | 1.35e-93 | 278 |
| MS.gene36100.t1 | AT1G16360 | 61.836 | 207 | 78 | 1 | 24 | 229 | 17 | 223 | 1.35e-93 | 278 |
| MS.gene36100.t1 | AT5G46150 | 57.767 | 206 | 85 | 2 | 25 | 228 | 28 | 233 | 1.21e-89 | 269 |
Find 63 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGTACCGTCGGTGATTC+TGG | 0.266413 | 8.3:+52681867 | None:intergenic |
| AGTGATAGAGATCATAAATT+TGG | 0.272931 | 8.3:-52680868 | MS.gene36100:CDS |
| CCCTCAATTGCTCATCATTT+CGG | 0.279039 | 8.3:+52681058 | None:intergenic |
| TTCCAGAATGGTAATATTAC+AGG | 0.280420 | 8.3:-52680823 | MS.gene36100:CDS |
| CACCTGTAATATTACCATTC+TGG | 0.312585 | 8.3:+52680821 | None:intergenic |
| CTTCATATTTGTCATGGAAT+AGG | 0.326806 | 8.3:-52679385 | MS.gene36100:CDS |
| CAGCATGCGTACCGTCAAAT+TGG | 0.350399 | 8.3:-52682142 | MS.gene36100:CDS |
| TCTATTTGTAGTAAGATCAT+TGG | 0.358198 | 8.3:+52683442 | None:intergenic |
| ACCATCGTATTCATTCCTAT+TGG | 0.381424 | 8.3:-52682320 | MS.gene36100:CDS |
| CCATACAACTTCCTAAAAGT+TGG | 0.399756 | 8.3:+52680391 | None:intergenic |
| TGGAAAGATTGAGGTGGATC+TGG | 0.409137 | 8.3:-52680371 | MS.gene36100:CDS |
| TTCTCAGTTCAGTGACCTGA+TGG | 0.411610 | 8.3:+52679359 | None:intergenic |
| GGGATTGCTTATCTCTCTGT+TGG | 0.413229 | 8.3:-52680229 | MS.gene36100:CDS |
| ACTTTATCTGTCCAATTTGA+CGG | 0.415199 | 8.3:+52682131 | None:intergenic |
| GTGGAAAGAATGACTTCCTT+GGG | 0.417288 | 8.3:-52680249 | MS.gene36100:CDS |
| AGCAGGAGGATCTTATCGTT+TGG | 0.422953 | 8.3:-52680432 | MS.gene36100:CDS |
| GACCCTGAACGTGATGTAAA+TGG | 0.428391 | 8.3:-52681003 | MS.gene36100:CDS |
| TACCTTGTGGTCTTATAGCT+TGG | 0.435333 | 8.3:-52680969 | MS.gene36100:CDS |
| AGGTTGTTGAAATTGTTGAT+AGG | 0.436935 | 8.3:-52682172 | MS.gene36100:CDS |
| ATAAGTGAAGCAACTCCAAT+AGG | 0.440672 | 8.3:+52682305 | None:intergenic |
| GGTGGAAAGAATGACTTCCT+TGG | 0.448097 | 8.3:-52680250 | MS.gene36100:CDS |
| ACCGCTTGTGGTGTAAGAAT+AGG | 0.455359 | 8.3:+52682462 | None:intergenic |
| ATTGCTTATCTCTCTGTTGG+AGG | 0.456603 | 8.3:-52680226 | MS.gene36100:CDS |
| ACACCATTTACATCACGTTC+AGG | 0.458429 | 8.3:+52681000 | None:intergenic |
| TCTCTTTGTTATAGGCAACT+TGG | 0.460443 | 8.3:-52679413 | MS.gene36100:intron |
| GCCGAAATGATGAGCAATTG+AGG | 0.464516 | 8.3:-52681059 | MS.gene36100:CDS |
| GAGATCCTTCATATTTGTCA+TGG | 0.476748 | 8.3:-52679391 | MS.gene36100:CDS |
| TTGTATTGTCAACTACTAGT+TGG | 0.492500 | 8.3:-52680276 | MS.gene36100:CDS |
| ATTGAGGTGGATCTGGAGAA+AGG | 0.496339 | 8.3:-52680364 | MS.gene36100:CDS |
| GATGAGCAATTGAGGGATGC+TGG | 0.508544 | 8.3:-52681051 | MS.gene36100:CDS |
| AGCTGATAGTAAACATAGAT+AGG | 0.508601 | 8.3:+52681902 | None:intergenic |
| TGAACAAGAAAGAAATCTCA+TGG | 0.508781 | 8.3:-52680894 | MS.gene36100:CDS |
| CCGAAATGATGAGCAATTGA+GGG | 0.522900 | 8.3:-52681058 | MS.gene36100:CDS |
| ACAAACATATTTACCGCTTG+TGG | 0.523482 | 8.3:+52682450 | None:intergenic |
| TCAACTACTAGTTGGCTTGG+TGG | 0.523709 | 8.3:-52680268 | MS.gene36100:CDS |
| TATGAAACAGTTGAGTGAGC+AGG | 0.525938 | 8.3:-52680449 | MS.gene36100:intron |
| CTATTCCATGACAAATATGA+AGG | 0.529494 | 8.3:+52679386 | None:intergenic |
| TGAAATTGTTGATAGGTATG+AGG | 0.531187 | 8.3:-52682165 | MS.gene36100:CDS |
| GAAGTTGTATGGAAAGATTG+AGG | 0.531483 | 8.3:-52680380 | MS.gene36100:CDS |
| TCATGGAATAGGAACCCATC+AGG | 0.540204 | 8.3:-52679374 | MS.gene36100:CDS |
| GTTATGGCAACAACCAGCGT+TGG | 0.544670 | 8.3:-52683467 | MS.gene36100:CDS |
| TCTCAGTTCAGTGACCTGAT+GGG | 0.549779 | 8.3:+52679360 | None:intergenic |
| TTGTCAACTACTAGTTGGCT+TGG | 0.552516 | 8.3:-52680271 | MS.gene36100:CDS |
| CACCATTTACATCACGTTCA+GGG | 0.557158 | 8.3:+52681001 | None:intergenic |
| GCCTATTCTTACACCACAAG+CGG | 0.573542 | 8.3:-52682463 | MS.gene36100:intron |
| ATAAGACCACAAGGTACGAT+TGG | 0.580186 | 8.3:+52680976 | None:intergenic |
| TATCGTTTGGATGCGGACTG+CGG | 0.588232 | 8.3:-52680419 | MS.gene36100:CDS |
| AGGATCTTATCGTTTGGATG+CGG | 0.592427 | 8.3:-52680426 | MS.gene36100:CDS |
| TCATCTCAACGAGAGTATAC+CGG | 0.595675 | 8.3:-52680794 | MS.gene36100:intron |
| CAGAATGGTAATATTACAGG+TGG | 0.609886 | 8.3:-52680820 | MS.gene36100:CDS |
| CTCCAAGCTATAAGACCACA+AGG | 0.620489 | 8.3:+52680967 | None:intergenic |
| GTTGTATGGAAAGATTGAGG+TGG | 0.624167 | 8.3:-52680377 | MS.gene36100:CDS |
| CAGAGAGATAAGCAATCCCA+AGG | 0.625244 | 8.3:+52680233 | None:intergenic |
| ATATACAATAGTAAAAGCCA+TGG | 0.632004 | 8.3:+52680186 | None:intergenic |
| AAGATCATTGGATCCAACGC+TGG | 0.632825 | 8.3:+52683454 | None:intergenic |
| GAAACAGTTGAGTGAGCAGG+AGG | 0.635104 | 8.3:-52680446 | MS.gene36100:intron |
| GGAAAAGCAAACTCAACAAG+TGG | 0.654434 | 8.3:-52681030 | MS.gene36100:CDS |
| GTAAGAATAGGCTTGCATGC+TGG | 0.654457 | 8.3:+52682474 | None:intergenic |
| CTGCCGATAAAACTTGCACA+AGG | 0.669954 | 8.3:-52682091 | MS.gene36100:CDS |
| TCCAATAGGAATGAATACGA+TGG | 0.696774 | 8.3:+52682319 | None:intergenic |
| GAAAGGTGATGAGATAAACG+TGG | 0.699022 | 8.3:-52680347 | MS.gene36100:CDS |
| ACTTCTACCAGAATCACCGA+CGG | 0.729577 | 8.3:-52681874 | MS.gene36100:intron |
| GGTGTGCCAATCGTACCTTG+TGG | 0.829864 | 8.3:-52680982 | MS.gene36100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTAAAAAAA+AGG | - | chr8.3:52681739-52681758 | MS.gene36100:intron | 0.0% |
| !! | AAAGTATATATTATAATTAC+AGG | + | chr8.3:52683283-52683302 | None:intergenic | 10.0% |
| !! | AAGTATATATTATAATTACA+GGG | + | chr8.3:52683282-52683301 | None:intergenic | 10.0% |
| !! | TATTTGTATTTATATTCAAA+AGG | + | chr8.3:52681578-52681597 | None:intergenic | 10.0% |
| !!! | TTTCTATTAATTCTTTTTTA+GGG | - | chr8.3:52679443-52679462 | MS.gene36100:intron | 10.0% |
| !!! | TTTTCTATTAATTCTTTTTT+AGG | - | chr8.3:52679442-52679461 | MS.gene36100:intron | 10.0% |
| !!! | TTTTTATGTTAATTTTTGAA+GGG | - | chr8.3:52679788-52679807 | MS.gene36100:intron | 10.0% |
| !!! | TTTTTATGTTCATTTTTTAA+GGG | - | chr8.3:52679540-52679559 | MS.gene36100:intron | 10.0% |
| !!! | TTTTTTATGTTAATTTTTGA+AGG | - | chr8.3:52679787-52679806 | MS.gene36100:intron | 10.0% |
| !!! | TTTTTTATGTTCATTTTTTA+AGG | - | chr8.3:52679539-52679558 | MS.gene36100:intron | 10.0% |
| !! | AAATTAAGTTTCAAAAATCA+TGG | + | chr8.3:52680133-52680152 | None:intergenic | 15.0% |
| !! | AAATTAGAAAAAACAAAACA+TGG | + | chr8.3:52679492-52679511 | None:intergenic | 15.0% |
| !! | AATTACAAAAAAAGAAAACA+TGG | + | chr8.3:52679692-52679711 | None:intergenic | 15.0% |
| !! | AATTAGAAAAAACAAAACAT+GGG | + | chr8.3:52679491-52679510 | None:intergenic | 15.0% |
| !! | ATTACAAAAAAAGAAAACAT+GGG | + | chr8.3:52679691-52679710 | None:intergenic | 15.0% |
| !! | ATTTGAAAAAAAGGATTATT+TGG | - | chr8.3:52681258-52681277 | MS.gene36100:intron | 15.0% |
| !!! | ATGTTTTGTTTTTTCTAATT+TGG | - | chr8.3:52679491-52679510 | MS.gene36100:intron | 15.0% |
| !!! | TTATTGTTACTTGTTTTTTT+AGG | - | chr8.3:52679642-52679661 | MS.gene36100:intron | 15.0% |
| !!! | TTTTATGTTCATTTTTTAAG+GGG | - | chr8.3:52679541-52679560 | MS.gene36100:intron | 15.0% |
| !! | AACAAACAACATTTATTCAT+AGG | + | chr8.3:52681190-52681209 | None:intergenic | 20.0% |
| !! | AACAAATGATCATCAAAATT+TGG | + | chr8.3:52680865-52680884 | None:intergenic | 20.0% |
| !! | CTAAATTTCTTATAAGCTTA+TGG | - | chr8.3:52682078-52682097 | MS.gene36100:intron | 20.0% |
| !! | GACAATAATTGTATGTATTT+GGG | - | chr8.3:52680241-52680260 | MS.gene36100:CDS | 20.0% |
| !! | TAAAAACTACTCTTATGAAT+AGG | - | chr8.3:52680886-52680905 | MS.gene36100:CDS | 20.0% |
| !! | TCAAATTAGAAAACCATAAT+GGG | + | chr8.3:52681244-52681263 | None:intergenic | 20.0% |
| !! | TGACAATAATTGTATGTATT+TGG | - | chr8.3:52680240-52680259 | MS.gene36100:CDS | 20.0% |
| !! | TGAGCTAATAAAAATTATGT+TGG | + | chr8.3:52682856-52682875 | None:intergenic | 20.0% |
| !! | TTCAAATTAGAAAACCATAA+TGG | + | chr8.3:52681245-52681264 | None:intergenic | 20.0% |
| !!! | AATTTCAACTGATTCATATA+AGG | + | chr8.3:52683312-52683331 | None:intergenic | 20.0% |
| !!! | ATTTCAACTGATTCATATAA+GGG | + | chr8.3:52683311-52683330 | None:intergenic | 20.0% |
| !!! | GGTTTTCTAATTTGAAAAAA+AGG | - | chr8.3:52681249-52681268 | MS.gene36100:intron | 20.0% |
| !!! | TAGAAAATTATGTTGACTTA+AGG | + | chr8.3:52682880-52682899 | None:intergenic | 20.0% |
| !!! | TGTGTTTGTTATGTAAATTT+TGG | - | chr8.3:52679716-52679735 | MS.gene36100:intron | 20.0% |
| !!! | TTTAGAATTCACTATTTACA+TGG | - | chr8.3:52680445-52680464 | MS.gene36100:intron | 20.0% |
| !!! | TTTATGTTCATTTTTTAAGG+GGG | - | chr8.3:52679542-52679561 | MS.gene36100:intron | 20.0% |
| ! | AAAAATGTGTATGTCACATT+TGG | + | chr8.3:52682254-52682273 | None:intergenic | 25.0% |
| ! | AAGATGTAAGAAGCAAAAAA+AGG | - | chr8.3:52683004-52683023 | MS.gene36100:intron | 25.0% |
| ! | AATAGAAAAAAGCTTACACT+TGG | + | chr8.3:52679431-52679450 | None:intergenic | 25.0% |
| ! | AGTGAATTCTAAATGCATAT+AGG | + | chr8.3:52680438-52680457 | None:intergenic | 25.0% |
| ! | AGTGATAGAGATCATAAATT+TGG | - | chr8.3:52681963-52681982 | MS.gene36100:intron | 25.0% |
| ! | AGTTAATGCAGAAATAACAT+AGG | + | chr8.3:52680813-52680832 | None:intergenic | 25.0% |
| ! | ATAAGTTGTTTACCTAAACA+AGG | + | chr8.3:52679843-52679862 | None:intergenic | 25.0% |
| ! | ATAGAAAAAAGCTTACACTT+GGG | + | chr8.3:52679430-52679449 | None:intergenic | 25.0% |
| ! | ATATACAATAGTAAAAGCCA+TGG | + | chr8.3:52682648-52682667 | None:intergenic | 25.0% |
| ! | ATTAAGCAAATATTACCTCA+TGG | - | chr8.3:52679596-52679615 | MS.gene36100:intron | 25.0% |
| ! | ATTTGACATGTTGAGTATTA+TGG | - | chr8.3:52680149-52680168 | MS.gene36100:intron | 25.0% |
| ! | TCTATTTGTAGTAAGATCAT+TGG | + | chr8.3:52679392-52679411 | None:intergenic | 25.0% |
| ! | TGATTGATCTATTTGAAGAT+TGG | + | chr8.3:52682222-52682241 | None:intergenic | 25.0% |
| ! | TTATAACTGATCTTTGTATC+AGG | - | chr8.3:52680639-52680658 | MS.gene36100:intron | 25.0% |
| !! | AACATTTCGTGCATTTTAAA+TGG | + | chr8.3:52681385-52681404 | None:intergenic | 25.0% |
| !! | TGGTATATTACTTTCTTTTC+AGG | - | chr8.3:52680465-52680484 | MS.gene36100:intron | 25.0% |
| !! | TTTGGTATCATTTAAGTTTG+AGG | - | chr8.3:52681276-52681295 | MS.gene36100:intron | 25.0% |
| !!! | TACAACACATATAGTTTTAG+TGG | - | chr8.3:52682521-52682540 | MS.gene36100:intron | 25.0% |
| !!! | TACCATTCTGGAAATTTTTA+GGG | + | chr8.3:52682001-52682020 | None:intergenic | 25.0% |
| !!! | TTACCATTCTGGAAATTTTT+AGG | + | chr8.3:52682002-52682021 | None:intergenic | 25.0% |
| !!! | TTTTGAATGATGATGTTCAT+TGG | - | chr8.3:52682721-52682740 | MS.gene36100:intron | 25.0% |
| AAAAAACCAATCAATGAGAG+TGG | + | chr8.3:52681656-52681675 | None:intergenic | 30.0% | |
| AAACTACTCTTATGAATAGG+TGG | - | chr8.3:52680889-52680908 | MS.gene36100:CDS | 30.0% | |
| AAAGACATCCAAACAATTGA+GGG | + | chr8.3:52681110-52681129 | None:intergenic | 30.0% | |
| AACAAAAGCCACAATTAGAT+TGG | + | chr8.3:52680095-52680114 | None:intergenic | 30.0% | |
| AACTTTCCTTACTTCATACA+TGG | - | chr8.3:52682767-52682786 | MS.gene36100:intron | 30.0% | |
| AATAAAAAGCAATGTACCGT+CGG | + | chr8.3:52680976-52680995 | None:intergenic | 30.0% | |
| AATTACACCGATGTAATACT+TGG | - | chr8.3:52683068-52683087 | MS.gene36100:intron | 30.0% | |
| ACACTGGAAATCATAAAATC+AGG | + | chr8.3:52682280-52682299 | None:intergenic | 30.0% | |
| ACTTTATCTGTCCAATTTGA+CGG | + | chr8.3:52680703-52680722 | None:intergenic | 30.0% | |
| ACTTTCCTTACTTCATACAT+GGG | - | chr8.3:52682768-52682787 | MS.gene36100:intron | 30.0% | |
| AGCTGATAGTAAACATAGAT+AGG | + | chr8.3:52680932-52680951 | None:intergenic | 30.0% | |
| AGGTTGTTGAAATTGTTGAT+AGG | - | chr8.3:52680659-52680678 | MS.gene36100:intron | 30.0% | |
| ATACTACCCAAGTATTACAT+CGG | + | chr8.3:52683078-52683097 | None:intergenic | 30.0% | |
| ATGAGGTTATGAGTGATTTA+TGG | - | chr8.3:52680195-52680214 | MS.gene36100:CDS | 30.0% | |
| ATTACACCGATGTAATACTT+GGG | - | chr8.3:52683069-52683088 | MS.gene36100:intron | 30.0% | |
| CTATTCCATGACAAATATGA+AGG | + | chr8.3:52683448-52683467 | None:intergenic | 30.0% | |
| CTTCATATTTGTCATGGAAT+AGG | - | chr8.3:52683446-52683465 | MS.gene36100:CDS | 30.0% | |
| GAACAAGTACAAAGAGAAAA+TGG | + | chr8.3:52680791-52680810 | None:intergenic | 30.0% | |
| GAGTAAGTGAAAAAACTTAC+CGG | + | chr8.3:52682059-52682078 | None:intergenic | 30.0% | |
| GTTGAAATTGTGAAGTTTAG+TGG | - | chr8.3:52683323-52683342 | MS.gene36100:intron | 30.0% | |
| TAATTTCCACTCTCATTGAT+TGG | - | chr8.3:52681647-52681666 | MS.gene36100:intron | 30.0% | |
| TGAACAAGAAAGAAATCTCA+TGG | - | chr8.3:52681937-52681956 | MS.gene36100:intron | 30.0% | |
| TTAGGCATTTCAGCTTAATT+TGG | - | chr8.3:52679660-52679679 | MS.gene36100:intron | 30.0% | |
| TTATGAGTGATTTATGGAGT+TGG | - | chr8.3:52680201-52680220 | MS.gene36100:CDS | 30.0% | |
| TTCACATTTACAATGCACAA+AGG | - | chr8.3:52681030-52681049 | MS.gene36100:CDS | 30.0% | |
| TTCCAGAATGGTAATATTAC+AGG | - | chr8.3:52682008-52682027 | MS.gene36100:intron | 30.0% | |
| TTCCCTAAAAATTTCCAGAA+TGG | - | chr8.3:52681996-52682015 | MS.gene36100:intron | 30.0% | |
| TTGTATTGTCAACTACTAGT+TGG | - | chr8.3:52682555-52682574 | MS.gene36100:intron | 30.0% | |
| TTTGATCTCTGTCATATAGA+AGG | - | chr8.3:52683040-52683059 | MS.gene36100:intron | 30.0% | |
| ! | CAAATATTACCTCATGGTTT+TGG | - | chr8.3:52679602-52679621 | MS.gene36100:intron | 30.0% |
| ! | TCTGTATGTCTCTTTGTTAT+AGG | - | chr8.3:52683410-52683429 | MS.gene36100:intron | 30.0% |
| ! | TGAAATTGTTGATAGGTATG+AGG | - | chr8.3:52680666-52680685 | MS.gene36100:intron | 30.0% |
| ! | TTGTATATTTTGTCAAGCCA+AGG | - | chr8.3:52682660-52682679 | MS.gene36100:intron | 30.0% |
| !! | ATAAGACTTTAGCCTTGTTT+AGG | - | chr8.3:52679828-52679847 | MS.gene36100:intron | 30.0% |
| !!! | CTCATTGATTGGTTTTTTAG+TGG | - | chr8.3:52681658-52681677 | MS.gene36100:intron | 30.0% |
| AACAAGTTTCCAAAACCATG+AGG | + | chr8.3:52679614-52679633 | None:intergenic | 35.0% | |
| AAGCAAACAATCAAAGACAG+TGG | + | chr8.3:52681620-52681639 | None:intergenic | 35.0% | |
| ACAAACATATTTACCGCTTG+TGG | + | chr8.3:52680384-52680403 | None:intergenic | 35.0% | |
| ACCATCGTATTCATTCCTAT+TGG | - | chr8.3:52680511-52680530 | MS.gene36100:intron | 35.0% | |
| ATAAGTGAAGCAACTCCAAT+AGG | + | chr8.3:52680529-52680548 | None:intergenic | 35.0% | |
| ATTCACTCTTTGCACACAAT+AGG | - | chr8.3:52682811-52682830 | MS.gene36100:intron | 35.0% | |
| CAAACAAGCCAATCTAATTG+TGG | - | chr8.3:52680084-52680103 | MS.gene36100:intron | 35.0% | |
| CAAAGACATCCAAACAATTG+AGG | + | chr8.3:52681111-52681130 | None:intergenic | 35.0% | |
| CACCTGTAATATTACCATTC+TGG | + | chr8.3:52682013-52682032 | None:intergenic | 35.0% | |
| CAGAATGGTAATATTACAGG+TGG | - | chr8.3:52682011-52682030 | MS.gene36100:intron | 35.0% | |
| CCATACAACTTCCTAAAAGT+TGG | + | chr8.3:52682443-52682462 | None:intergenic | 35.0% | |
| CTTATGACGATAAGTGCATA+TGG | + | chr8.3:52679878-52679897 | None:intergenic | 35.0% | |
| GAAAACCCATGTATGAAGTA+AGG | + | chr8.3:52682776-52682795 | None:intergenic | 35.0% | |
| GAACGTGTAAGATGTTAATC+TGG | + | chr8.3:52683233-52683252 | None:intergenic | 35.0% | |
| GAAGTTGTATGGAAAGATTG+AGG | - | chr8.3:52682451-52682470 | MS.gene36100:intron | 35.0% | |
| GAGATCCTTCATATTTGTCA+TGG | - | chr8.3:52683440-52683459 | MS.gene36100:CDS | 35.0% | |
| GCTGTCTTCATAAGTTATCT+TGG | - | chr8.3:52679958-52679977 | MS.gene36100:intron | 35.0% | |
| TACAATCACAAGATGAACAG+TGG | + | chr8.3:52682306-52682325 | None:intergenic | 35.0% | |
| TAGCTTACGAACAATGTCAT+AGG | - | chr8.3:52680004-52680023 | MS.gene36100:intron | 35.0% | |
| TAGTTGAAGAATGTGCTATG+AGG | - | chr8.3:52680178-52680197 | MS.gene36100:CDS | 35.0% | |
| TCCAATAGGAATGAATACGA+TGG | + | chr8.3:52680515-52680534 | None:intergenic | 35.0% | |
| TGAAGTAAGGAAAGTTATCG+AGG | + | chr8.3:52682763-52682782 | None:intergenic | 35.0% | |
| TTACAATGCACAAAGGAAAG+TGG | - | chr8.3:52681037-52681056 | MS.gene36100:CDS | 35.0% | |
| ! | AGTAAGCGATTTTCTTACCT+TGG | + | chr8.3:52682680-52682699 | None:intergenic | 35.0% |
| ! | ATAATGGGAGCACATGAAAA+CGG | + | chr8.3:52681229-52681248 | None:intergenic | 35.0% |
| ! | TCTCTTTGTTATAGGCAACT+TGG | - | chr8.3:52683418-52683437 | MS.gene36100:intron | 35.0% |
| !! | CCAACTTTTAGGAAGTTGTA+TGG | - | chr8.3:52682440-52682459 | MS.gene36100:intron | 35.0% |
| !! | GTTGTCGATCTAGCTATTTT+TGG | + | chr8.3:52681337-52681356 | None:intergenic | 35.0% |
| !! | TGTCCTTGTGCAAGTTTTAT+CGG | + | chr8.3:52680746-52680765 | None:intergenic | 35.0% |
| ACACCATTTACATCACGTTC+AGG | + | chr8.3:52681834-52681853 | None:intergenic | 40.0% | |
| AGATGAACAGTGGAATACAC+TGG | + | chr8.3:52682296-52682315 | None:intergenic | 40.0% | |
| AGGATCTTATCGTTTGGATG+CGG | - | chr8.3:52682405-52682424 | MS.gene36100:intron | 40.0% | |
| ATAAGACCACAAGGTACGAT+TGG | + | chr8.3:52681858-52681877 | None:intergenic | 40.0% | |
| ATTGCTTATCTCTCTGTTGG+AGG | - | chr8.3:52682605-52682624 | MS.gene36100:intron | 40.0% | |
| CACCATTTACATCACGTTCA+GGG | + | chr8.3:52681833-52681852 | None:intergenic | 40.0% | |
| CACTCTGCTCAATAACTTAC+TGG | - | chr8.3:52683098-52683117 | MS.gene36100:intron | 40.0% | |
| CCCTCAATTGCTCATCATTT+CGG | + | chr8.3:52681776-52681795 | None:intergenic | 40.0% | |
| CCGAAATGATGAGCAATTGA+GGG | - | chr8.3:52681773-52681792 | MS.gene36100:intron | 40.0% | |
| GAAAGGTGATGAGATAAACG+TGG | - | chr8.3:52682484-52682503 | MS.gene36100:CDS | 40.0% | |
| GGAAAAGCAAACTCAACAAG+TGG | - | chr8.3:52681801-52681820 | MS.gene36100:intron | 40.0% | |
| GTGGAAAGAATGACTTCCTT+GGG | - | chr8.3:52682582-52682601 | MS.gene36100:intron | 40.0% | |
| GTTGTATGGAAAGATTGAGG+TGG | - | chr8.3:52682454-52682473 | MS.gene36100:intron | 40.0% | |
| TATGAAACAGTTGAGTGAGC+AGG | - | chr8.3:52682382-52682401 | MS.gene36100:intron | 40.0% | |
| TTGTCAACTACTAGTTGGCT+TGG | - | chr8.3:52682560-52682579 | MS.gene36100:intron | 40.0% | |
| ! | GAAAGTGGTTTGAAGCAACA+AGG | - | chr8.3:52681052-52681071 | MS.gene36100:CDS | 40.0% |
| ! | GTTTTCATGTGCTCCCATTA+TGG | - | chr8.3:52681228-52681247 | MS.gene36100:intron | 40.0% |
| ! | TAATGGGAGCACATGAAAAC+GGG | + | chr8.3:52681228-52681247 | None:intergenic | 40.0% |
| ! | TCATCTCAACGAGAGTATAC+CGG | - | chr8.3:52682037-52682056 | MS.gene36100:intron | 40.0% |
| ! | TGGAGGATTGAGCTTCTTTT+TGG | - | chr8.3:52682622-52682641 | MS.gene36100:intron | 40.0% |
| !! | ATTGAGCTTCTTTTTGGCCA+TGG | - | chr8.3:52682628-52682647 | MS.gene36100:intron | 40.0% |
| !! | TACCTTGTGGTCTTATAGCT+TGG | - | chr8.3:52681862-52681881 | MS.gene36100:intron | 40.0% |
| AAGATCATTGGATCCAACGC+TGG | + | chr8.3:52679380-52679399 | None:intergenic | 45.0% | |
| ACCGCTTGTGGTGTAAGAAT+AGG | + | chr8.3:52680372-52680391 | None:intergenic | 45.0% | |
| ACTTCTACCAGAATCACCGA+CGG | - | chr8.3:52680957-52680976 | MS.gene36100:CDS | 45.0% | |
| AGCAGGAGGATCTTATCGTT+TGG | - | chr8.3:52682399-52682418 | MS.gene36100:intron | 45.0% | |
| ATGGAGTTGGACAATATGCG+TGG | - | chr8.3:52680214-52680233 | MS.gene36100:CDS | 45.0% | |
| ATTGAGGTGGATCTGGAGAA+AGG | - | chr8.3:52682467-52682486 | MS.gene36100:CDS | 45.0% | |
| CAGAGAGATAAGCAATCCCA+AGG | + | chr8.3:52682601-52682620 | None:intergenic | 45.0% | |
| CTCCAAGCTATAAGACCACA+AGG | + | chr8.3:52681867-52681886 | None:intergenic | 45.0% | |
| CTGCCGATAAAACTTGCACA+AGG | - | chr8.3:52680740-52680759 | MS.gene36100:intron | 45.0% | |
| GACATCCAAACAATTGAGGG+AGG | + | chr8.3:52681107-52681126 | None:intergenic | 45.0% | |
| GACCCTGAACGTGATGTAAA+TGG | - | chr8.3:52681828-52681847 | MS.gene36100:intron | 45.0% | |
| GCCGAAATGATGAGCAATTG+AGG | - | chr8.3:52681772-52681791 | MS.gene36100:intron | 45.0% | |
| GCCTATTCTTACACCACAAG+CGG | - | chr8.3:52680368-52680387 | MS.gene36100:CDS | 45.0% | |
| GGGATTGCTTATCTCTCTGT+TGG | - | chr8.3:52682602-52682621 | MS.gene36100:intron | 45.0% | |
| GGTGGAAAGAATGACTTCCT+TGG | - | chr8.3:52682581-52682600 | MS.gene36100:intron | 45.0% | |
| GTAAGAATAGGCTTGCATGC+TGG | + | chr8.3:52680360-52680379 | None:intergenic | 45.0% | |
| TCATGGAATAGGAACCCATC+AGG | - | chr8.3:52683457-52683476 | MS.gene36100:CDS | 45.0% | |
| TGGAAAGATTGAGGTGGATC+TGG | - | chr8.3:52682460-52682479 | MS.gene36100:intron | 45.0% | |
| ! | AATGGGAGCACATGAAAACG+GGG | + | chr8.3:52681227-52681246 | None:intergenic | 45.0% |
| !! | TCAACTACTAGTTGGCTTGG+TGG | - | chr8.3:52682563-52682582 | MS.gene36100:intron | 45.0% |
| !!! | TAATTATAATATATACTTTT+CGG | - | chr8.3:52683284-52683303 | MS.gene36100:intron | 5.0% |
| CAATGTACCGTCGGTGATTC+TGG | + | chr8.3:52680967-52680986 | None:intergenic | 50.0% | |
| CAGCATGCGTACCGTCAAAT+TGG | - | chr8.3:52680689-52680708 | MS.gene36100:intron | 50.0% | |
| GAAACAGTTGAGTGAGCAGG+AGG | - | chr8.3:52682385-52682404 | MS.gene36100:intron | 50.0% | |
| GATGAGCAATTGAGGGATGC+TGG | - | chr8.3:52681780-52681799 | MS.gene36100:intron | 50.0% | |
| GCACAAGGACACTGCATGTA+TGG | - | chr8.3:52680755-52680774 | MS.gene36100:intron | 50.0% | |
| GCGTACCTCCCTCAATTGTT+TGG | - | chr8.3:52681099-52681118 | MS.gene36100:intron | 50.0% | |
| ! | CTGCGGCTTTGCCAACTTTT+AGG | - | chr8.3:52682429-52682448 | MS.gene36100:intron | 50.0% |
| ! | TATCGTTTGGATGCGGACTG+CGG | - | chr8.3:52682412-52682431 | MS.gene36100:intron | 50.0% |
| GGTGTGCCAATCGTACCTTG+TGG | - | chr8.3:52681849-52681868 | MS.gene36100:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 52679367 | 52683486 | 52679367 | ID=MS.gene36100 |
| chr8.3 | mRNA | 52679367 | 52683486 | 52679367 | ID=MS.gene36100.t1;Parent=MS.gene36100 |
| chr8.3 | exon | 52683420 | 52683486 | 52683420 | ID=MS.gene36100.t1.exon1;Parent=MS.gene36100.t1 |
| chr8.3 | CDS | 52683420 | 52683486 | 52683420 | ID=cds.MS.gene36100.t1;Parent=MS.gene36100.t1 |
| chr8.3 | exon | 52682464 | 52682522 | 52682464 | ID=MS.gene36100.t1.exon2;Parent=MS.gene36100.t1 |
| chr8.3 | CDS | 52682464 | 52682522 | 52682464 | ID=cds.MS.gene36100.t1;Parent=MS.gene36100.t1 |
| chr8.3 | exon | 52682292 | 52682366 | 52682292 | ID=MS.gene36100.t1.exon3;Parent=MS.gene36100.t1 |
| chr8.3 | CDS | 52682292 | 52682366 | 52682292 | ID=cds.MS.gene36100.t1;Parent=MS.gene36100.t1 |
| chr8.3 | exon | 52682082 | 52682192 | 52682082 | ID=MS.gene36100.t1.exon4;Parent=MS.gene36100.t1 |
| chr8.3 | CDS | 52682082 | 52682192 | 52682082 | ID=cds.MS.gene36100.t1;Parent=MS.gene36100.t1 |
| chr8.3 | exon | 52681875 | 52681945 | 52681875 | ID=MS.gene36100.t1.exon5;Parent=MS.gene36100.t1 |
| chr8.3 | CDS | 52681875 | 52681945 | 52681875 | ID=cds.MS.gene36100.t1;Parent=MS.gene36100.t1 |
| chr8.3 | exon | 52680795 | 52681092 | 52680795 | ID=MS.gene36100.t1.exon6;Parent=MS.gene36100.t1 |
| chr8.3 | CDS | 52680795 | 52681092 | 52680795 | ID=cds.MS.gene36100.t1;Parent=MS.gene36100.t1 |
| chr8.3 | exon | 52680172 | 52680461 | 52680172 | ID=MS.gene36100.t1.exon7;Parent=MS.gene36100.t1 |
| chr8.3 | CDS | 52680172 | 52680461 | 52680172 | ID=cds.MS.gene36100.t1;Parent=MS.gene36100.t1 |
| chr8.3 | exon | 52679367 | 52679421 | 52679367 | ID=MS.gene36100.t1.exon8;Parent=MS.gene36100.t1 |
| chr8.3 | CDS | 52679367 | 52679421 | 52679367 | ID=cds.MS.gene36100.t1;Parent=MS.gene36100.t1 |
| Gene Sequence |
| Protein sequence |
