AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene068941


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068941.t1 MTR_2g067760 78.979 333 69 1 10 341 16 348 0.0 546
MS.gene068941.t1 MTR_2g101400 62.242 339 125 3 3 338 5 343 6.43e-156 441
MS.gene068941.t1 MTR_7g086110 62.893 318 114 4 24 337 4 321 3.39e-147 418
MS.gene068941.t1 MTR_2g451450 59.077 325 131 2 2 324 7 331 5.26e-141 402
MS.gene068941.t1 MTR_2g451450 65.351 228 79 0 109 336 1 228 7.92e-109 317
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068941.t1 AT1G54320 75.305 328 80 1 15 341 22 349 0.0 520
MS.gene068941.t1 AT3G12740 73.780 328 85 1 15 341 23 350 0.0 517
MS.gene068941.t1 AT1G16360 65.698 344 113 2 2 340 5 348 1.45e-172 483
MS.gene068941.t1 AT1G79450 69.113 327 100 1 15 340 22 348 8.65e-172 481
MS.gene068941.t1 AT1G16360 67.925 318 101 1 24 340 17 334 1.26e-166 468
MS.gene068941.t1 AT1G16360 66.776 304 100 1 24 326 17 320 4.73e-155 438
MS.gene068941.t1 AT1G79450 70.073 274 81 1 68 340 8 281 3.18e-143 406
MS.gene068941.t1 AT5G46150 56.535 329 138 3 10 336 13 338 2.05e-136 391
MS.gene068941.t1 AT5G46150 56.535 329 138 3 10 336 13 338 2.05e-136 391
MS.gene068941.t1 AT5G46150 57.098 317 134 2 10 324 13 329 2.10e-134 386
MS.gene068941.t1 AT1G16360 61.836 207 78 1 24 229 17 223 1.49e-93 278
MS.gene068941.t1 AT1G16360 61.836 207 78 1 24 229 17 223 1.49e-93 278
MS.gene068941.t1 AT5G46150 57.767 206 85 2 25 228 28 233 1.09e-89 269

Find 63 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGTACCGTCGGTGATTC+TGG 0.266413 8.1:+58369708 None:intergenic
AGTGATAGAGATCATAAATT+TGG 0.272931 8.1:-58368714 MS.gene068941:CDS
CCCTCAATTGCTCATCATTT+CGG 0.279039 8.1:+58368904 None:intergenic
TTCCAGAATGGTAATATTAC+AGG 0.280420 8.1:-58368669 MS.gene068941:CDS
CACCTGTAATATTACCATTC+TGG 0.312585 8.1:+58368667 None:intergenic
CTTCATATTTGTCATGGAAT+AGG 0.326806 8.1:-58367230 MS.gene068941:CDS
CAGCATGCGTACCGTCAAAT+TGG 0.350399 8.1:-58369983 MS.gene068941:CDS
TCTATTTGTAGTAAGATCAT+TGG 0.358198 8.1:+58371623 None:intergenic
ACCATCGTATTCATTCCTAT+TGG 0.381424 8.1:-58370161 MS.gene068941:CDS
GGCATTGCTTATCTCTCTGT+TGG 0.384623 8.1:-58368075 MS.gene068941:CDS
CCATACAACTTCCTAAAAGT+TGG 0.399756 8.1:+58368237 None:intergenic
TGGAAAGATTGAGGTGGATC+TGG 0.409137 8.1:-58368217 MS.gene068941:CDS
ACTTTATCTGTCCAATTTGA+CGG 0.415199 8.1:+58369972 None:intergenic
AGCAGGAGGATCTTATCGTT+TGG 0.422953 8.1:-58368278 MS.gene068941:CDS
GACCCTGAACGTGATGTAAA+TGG 0.428391 8.1:-58368849 MS.gene068941:CDS
TACCTTGTGGTCTTATAGCT+TGG 0.435333 8.1:-58368815 MS.gene068941:CDS
AGGTTGTTGAAATTGTTGAT+AGG 0.436935 8.1:-58370013 MS.gene068941:CDS
ATAAGTGAAGCAACTCCAAT+AGG 0.440672 8.1:+58370146 None:intergenic
ACCGCTTGTGGTGTAAGAAT+AGG 0.455359 8.1:+58370303 None:intergenic
ATTGCTTATCTCTCTGTTGG+AGG 0.456603 8.1:-58368072 MS.gene068941:CDS
ACACCATTTACATCACGTTC+AGG 0.458429 8.1:+58368846 None:intergenic
TCTCTTTGTTATAGGCAACT+TGG 0.460443 8.1:-58367258 MS.gene068941:intron
GCCGAAATGATGAGCAATTG+AGG 0.464516 8.1:-58368905 MS.gene068941:CDS
GAGATCCTTCATATTTGTCA+TGG 0.476748 8.1:-58367236 MS.gene068941:CDS
TCATGGAATAGGAACCCATC+AGG 0.477360 8.1:-58367219 MS.gene068941:CDS
TTGTATTGTCAACTACTAGT+TGG 0.492500 8.1:-58368122 MS.gene068941:CDS
ATTGAGGTGGATCTGGAGAA+AGG 0.496339 8.1:-58368210 MS.gene068941:CDS
TTATGGCAACAACCAGCGTT+GGG 0.507349 8.1:-58371647 MS.gene068941:CDS
GATGAGCAATTGAGGGATGC+TGG 0.508544 8.1:-58368897 MS.gene068941:CDS
AGCTGATAGTAAACATAGAT+AGG 0.508601 8.1:+58369743 None:intergenic
TGAACAAGAAAGAAATCTCA+TGG 0.508781 8.1:-58368740 MS.gene068941:CDS
GGTGGAAAGAATGACTTCCT+TGG 0.509883 8.1:-58368096 MS.gene068941:CDS
TTTCAGCTCAGTGCCCTGAT+GGG 0.513086 8.1:+58367205 None:intergenic
CCGAAATGATGAGCAATTGA+GGG 0.522900 8.1:-58368904 MS.gene068941:CDS
ACAAACATATTTACCGCTTG+TGG 0.523482 8.1:+58370291 None:intergenic
TCAACTACTAGTTGGCTTGG+TGG 0.523709 8.1:-58368114 MS.gene068941:CDS
TATGAAACAGTTGAGTGAGC+AGG 0.525938 8.1:-58368295 MS.gene068941:intron
CTATTCCATGACAAATATGA+AGG 0.529494 8.1:+58367231 None:intergenic
TGAAATTGTTGATAGGTATG+AGG 0.531187 8.1:-58370006 MS.gene068941:CDS
GAAGTTGTATGGAAAGATTG+AGG 0.531483 8.1:-58368226 MS.gene068941:CDS
GTTATGGCAACAACCAGCGT+TGG 0.542916 8.1:-58371648 MS.gene068941:CDS
TTGTCAACTACTAGTTGGCT+TGG 0.552516 8.1:-58368117 MS.gene068941:CDS
CACCATTTACATCACGTTCA+GGG 0.557158 8.1:+58368847 None:intergenic
GAAAGGTGATGAGATAAAAG+TGG 0.561470 8.1:-58368193 MS.gene068941:CDS
GCCTATTCTTACACCACAAG+CGG 0.573542 8.1:-58370304 MS.gene068941:intron
ATAAGACCACAAGGTACGAT+TGG 0.580186 8.1:+58368822 None:intergenic
TATCGTTTGGATGCGGACTG+CGG 0.588232 8.1:-58368265 MS.gene068941:CDS
AGGATCTTATCGTTTGGATG+CGG 0.592427 8.1:-58368272 MS.gene068941:CDS
TCATCTCAACGAGAGTATAC+CGG 0.595675 8.1:-58368640 MS.gene068941:intron
CAGAATGGTAATATTACAGG+TGG 0.609886 8.1:-58368666 MS.gene068941:CDS
CAGAGAGATAAGCAATGCCA+AGG 0.610437 8.1:+58368079 None:intergenic
AAGATCATTGGACCCAACGC+TGG 0.616777 8.1:+58371635 None:intergenic
CTCCAAGCTATAAGACCACA+AGG 0.620489 8.1:+58368813 None:intergenic
GTTGTATGGAAAGATTGAGG+TGG 0.624167 8.1:-58368223 MS.gene068941:CDS
CATGGAATAGGAACCCATCA+GGG 0.630665 8.1:-58367218 MS.gene068941:CDS
ATATACAATAGTAAAAGCCA+TGG 0.632004 8.1:+58368032 None:intergenic
GAAACAGTTGAGTGAGCAGG+AGG 0.635104 8.1:-58368292 MS.gene068941:intron
GGAAAAGCAAACTCAACAAG+TGG 0.654434 8.1:-58368876 MS.gene068941:CDS
GTAAGAATAGGCTTGCATGC+TGG 0.654457 8.1:+58370315 None:intergenic
CTGCCGATAAAACTTGCACA+AGG 0.669954 8.1:-58369932 MS.gene068941:CDS
TCCAATAGGAATGAATACGA+TGG 0.696774 8.1:+58370160 None:intergenic
ATTTCTACCAGAATCACCGA+CGG 0.732060 8.1:-58369715 MS.gene068941:intron
GGTGTGCCAATCGTACCTTG+TGG 0.829864 8.1:-58368828 MS.gene068941:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTTTTTTAAAAAA+AGG - chr8.1:58369919-58369938 MS.gene068941:intron 0.0%
!! AAAGATAAAATAAAGTTAAA+TGG - chr8.1:58368095-58368114 MS.gene068941:CDS 10.0%
!! AAAGTATATATTATAATTAC+AGG + chr8.1:58371464-58371483 None:intergenic 10.0%
!! AAGTATATATTATAATTACA+GGG + chr8.1:58371463-58371482 None:intergenic 10.0%
!! TATTTGTATTTATATTCAAA+AGG + chr8.1:58369763-58369782 None:intergenic 10.0%
!!! AAGTTCAATTTTTTTTTTTT+TGG - chr8.1:58367942-58367961 MS.gene068941:intron 10.0%
!!! ATTTTTATGTTCATTTTTTA+AGG - chr8.1:58367713-58367732 MS.gene068941:intron 10.0%
!!! ATTTTTATGTTCATTTTTTT+AGG - chr8.1:58367383-58367402 MS.gene068941:intron 10.0%
!!! TTTCTATTAATTCTTTTTTA+GGG - chr8.1:58367288-58367307 MS.gene068941:intron 10.0%
!!! TTTTCTATTAATTCTTTTTT+AGG - chr8.1:58367287-58367306 MS.gene068941:intron 10.0%
!!! TTTTTATGTTCATTTTTTAA+GGG - chr8.1:58367714-58367733 MS.gene068941:intron 10.0%
!!! TTTTTATGTTCATTTTTTTA+GGG - chr8.1:58367384-58367403 MS.gene068941:intron 10.0%
!! AAATTAGAAAAAACAAAACA+TGG + chr8.1:58367337-58367356 None:intergenic 15.0%
!! AATTAGAAAAAACAAAACAT+GGG + chr8.1:58367336-58367355 None:intergenic 15.0%
!! ATGTAAGAAGAAAAAAAAAA+AGG - chr8.1:58371185-58371204 MS.gene068941:intron 15.0%
!! GAAAATAATTGTATGTATTT+GGG - chr8.1:58368426-58368445 MS.gene068941:intron 15.0%
!! GTAAACTTAAAAAAGTTAAA+TGG - chr8.1:58368117-58368136 MS.gene068941:CDS 15.0%
!! TGAAAATAATTGTATGTATT+TGG - chr8.1:58368425-58368444 MS.gene068941:intron 15.0%
!!! ATGTTTTGTTTTTTCTAATT+TGG - chr8.1:58367336-58367355 MS.gene068941:intron 15.0%
!!! TTATGATTACTTCTTTTTTA+GGG - chr8.1:58367618-58367637 MS.gene068941:intron 15.0%
!!! TTATTGTTACTTGTTTTTTA+GGG - chr8.1:58367815-58367834 MS.gene068941:intron 15.0%
!!! TTTATATTCAAATTGACTTA+AGG + chr8.1:58371060-58371079 None:intergenic 15.0%
!!! TTTATTGTTACTTGTTTTTT+AGG - chr8.1:58367814-58367833 MS.gene068941:intron 15.0%
!!! TTTTATGTTCATTTTTTAAG+GGG - chr8.1:58367715-58367734 MS.gene068941:intron 15.0%
!!! TTTTATGTTCATTTTTTTAG+GGG - chr8.1:58367385-58367404 MS.gene068941:intron 15.0%
!!! TTTTTTGGTTAATTTTTGAA+GGG - chr8.1:58367957-58367976 MS.gene068941:intron 15.0%
!!! TTTTTTTGGTTAATTTTTGA+AGG - chr8.1:58367956-58367975 MS.gene068941:intron 15.0%
!! AAATCAGAAAAAACAAAACA+TGG + chr8.1:58367667-58367686 None:intergenic 20.0%
!! AAATTAAGTTTCAAAAACCA+TGG + chr8.1:58368318-58368337 None:intergenic 20.0%
!! AACAAACAACATTTATTCAT+AGG + chr8.1:58369375-58369394 None:intergenic 20.0%
!! AACAAATGATCATCAAAATT+TGG + chr8.1:58369050-58369069 None:intergenic 20.0%
!! AAGGTTAATTCTTTCATTAT+TGG - chr8.1:58367483-58367502 MS.gene068941:intron 20.0%
!! AATCAGAAAAAACAAAACAT+GGG + chr8.1:58367666-58367685 None:intergenic 20.0%
!! ATGTGAAAAAAAGGATTATT+TGG - chr8.1:58369443-58369462 MS.gene068941:intron 20.0%
!! CTAAATTTCTTATAAGCTTA+TGG - chr8.1:58370258-58370277 MS.gene068941:intron 20.0%
!! TAAAAACTACTCTTATGAAT+AGG - chr8.1:58369071-58369090 MS.gene068941:intron 20.0%
!! TAATTCTTTCATTATTGGAT+TGG - chr8.1:58367488-58367507 MS.gene068941:intron 20.0%
!! TGAGCTAATAAAAATTATGT+TGG + chr8.1:58371036-58371055 None:intergenic 20.0%
!! TGATTGATCTATTTAAAGAT+TGG + chr8.1:58370402-58370421 None:intergenic 20.0%
!!! AATTTCAACTGATTCATATA+AGG + chr8.1:58371493-58371512 None:intergenic 20.0%
!!! ATGTTTTGTTTTTTCTGATT+TGG - chr8.1:58367666-58367685 MS.gene068941:intron 20.0%
!!! ATTTCAACTGATTCATATAA+GGG + chr8.1:58371492-58371511 None:intergenic 20.0%
!!! GTTATGATTACTTCTTTTTT+AGG - chr8.1:58367617-58367636 MS.gene068941:intron 20.0%
!!! TATTGTTACTTGTTTTTTAG+GGG - chr8.1:58367816-58367835 MS.gene068941:intron 20.0%
!!! TTTAGAATTCACTATTTACA+TGG - chr8.1:58368630-58368649 MS.gene068941:intron 20.0%
! AAAAATGTGTATGTCACATT+TGG + chr8.1:58370434-58370453 None:intergenic 25.0%
! AAAACAAAAAATCTCACACT+TGG + chr8.1:58367595-58367614 None:intergenic 25.0%
! AAACAAAAAATCTCACACTT+GGG + chr8.1:58367594-58367613 None:intergenic 25.0%
! AATAGAAAAAAGCTTACACT+TGG + chr8.1:58367276-58367295 None:intergenic 25.0%
! AGTGAATTCTAAATGCATAT+AGG + chr8.1:58368623-58368642 None:intergenic 25.0%
! AGTGATAGAGATCATAAATT+TGG - chr8.1:58370143-58370162 MS.gene068941:CDS 25.0%
! AGTTAATGCAGAAATAACAT+AGG + chr8.1:58368998-58369017 None:intergenic 25.0%
! ATAAGTTGTTTACCTAAACA+AGG + chr8.1:58368012-58368031 None:intergenic 25.0%
! ATAGAAAAAAGCTTACACTT+GGG + chr8.1:58367275-58367294 None:intergenic 25.0%
! ATATACAATAGTAAAAGCCA+TGG + chr8.1:58370828-58370847 None:intergenic 25.0%
! ATGAGGTTATGAATGATTTA+TGG - chr8.1:58368380-58368399 MS.gene068941:intron 25.0%
! ATTAAGCAAATATTACCTCA+TGG - chr8.1:58367769-58367788 MS.gene068941:intron 25.0%
! ATTTGACATGTTGAGTATTA+TGG - chr8.1:58368334-58368353 MS.gene068941:intron 25.0%
! GAGTAAGTGAAAAAATTTAC+CGG + chr8.1:58370239-58370258 None:intergenic 25.0%
! TATAATTTCCACTCATTGAT+TGG - chr8.1:58369830-58369849 MS.gene068941:intron 25.0%
! TCACATTAGAAAACCATAAT+GGG + chr8.1:58369429-58369448 None:intergenic 25.0%
! TCTATTAGAAGTAAGATCAT+TGG + chr8.1:58367556-58367575 None:intergenic 25.0%
! TCTATTTGTAGTAAGATCAT+TGG + chr8.1:58367237-58367256 None:intergenic 25.0%
! TTATAACTGATCTTTGTATC+AGG - chr8.1:58368824-58368843 MS.gene068941:CDS 25.0%
! TTCACATTAGAAAACCATAA+TGG + chr8.1:58369430-58369449 None:intergenic 25.0%
! TTTAAGCAAATATTACTCCA+TGG - chr8.1:58368298-58368317 MS.gene068941:intron 25.0%
!! AACATTTCGTGCATTTTAAA+TGG + chr8.1:58369570-58369589 None:intergenic 25.0%
!! ATTATTGGATTGGATTGAAT+TGG - chr8.1:58367498-58367517 MS.gene068941:intron 25.0%
!! GGTTTTCTAATGTGAAAAAA+AGG - chr8.1:58369434-58369453 MS.gene068941:intron 25.0%
!! TGGTATATTACTTTCTTTTC+AGG - chr8.1:58368650-58368669 MS.gene068941:CDS 25.0%
!! TTTGGTATCATTTAAGTTTG+AGG - chr8.1:58369461-58369480 MS.gene068941:intron 25.0%
!!! TACAACACATATAGTTTTAG+TGG - chr8.1:58370701-58370720 MS.gene068941:intron 25.0%
!!! TACCATTCTGGAAATTTTTA+GGG + chr8.1:58370181-58370200 None:intergenic 25.0%
!!! TTACCATTCTGGAAATTTTT+AGG + chr8.1:58370182-58370201 None:intergenic 25.0%
!!! TTTTGAATGATGATGTTCAT+TGG - chr8.1:58370901-58370920 MS.gene068941:intron 25.0%
AAACTACTCTTATGAATAGG+TGG - chr8.1:58369074-58369093 MS.gene068941:intron 30.0%
AAAGACATCCAAACAATTGA+GGG + chr8.1:58369295-58369314 None:intergenic 30.0%
AACAAAAGCCACAATTAGAT+TGG + chr8.1:58368280-58368299 None:intergenic 30.0%
AACTTTCCTTACTTCATACA+TGG - chr8.1:58370947-58370966 MS.gene068941:intron 30.0%
AATAAAAAGCAATGTACCGT+CGG + chr8.1:58369161-58369180 None:intergenic 30.0%
AATTACACCGATGTAATACT+TGG - chr8.1:58371249-58371268 MS.gene068941:intron 30.0%
ACACTGGAAATCATAAAATC+AGG + chr8.1:58370460-58370479 None:intergenic 30.0%
ACTGTCTTCATAAGTTATCT+TGG - chr8.1:58368143-58368162 MS.gene068941:CDS 30.0%
ACTTTATCTGTCCAATTTGA+CGG + chr8.1:58368888-58368907 None:intergenic 30.0%
ACTTTCCTTACTTCATACAT+GGG - chr8.1:58370948-58370967 MS.gene068941:intron 30.0%
AGCTGATAGTAAACATAGAT+AGG + chr8.1:58369117-58369136 None:intergenic 30.0%
AGGTTGTTGAAATTGTTGAT+AGG - chr8.1:58368844-58368863 MS.gene068941:CDS 30.0%
ATACTACCCAAGTATTACAT+CGG + chr8.1:58371259-58371278 None:intergenic 30.0%
ATGGAGTTAGACAATATGTT+TGG - chr8.1:58368399-58368418 MS.gene068941:intron 30.0%
ATTACACCGATGTAATACTT+GGG - chr8.1:58371250-58371269 MS.gene068941:intron 30.0%
CTAAAAAACCAATCAATGAG+TGG + chr8.1:58369841-58369860 None:intergenic 30.0%
CTATTCCATGACAAATATGA+AGG + chr8.1:58371629-58371648 None:intergenic 30.0%
CTTCATATTTGTCATGGAAT+AGG - chr8.1:58371627-58371646 MS.gene068941:CDS 30.0%
GAACAAGTACAAAGAGAAAA+TGG + chr8.1:58368976-58368995 None:intergenic 30.0%
GAACATGTAAGATGTTAATC+TGG + chr8.1:58371414-58371433 None:intergenic 30.0%
GTTGAAATTGTGATGTTTAG+TGG - chr8.1:58371504-58371523 MS.gene068941:intron 30.0%
TAATGGGAACACATGAAAAT+GGG + chr8.1:58369413-58369432 None:intergenic 30.0%
TACAATCACAAGATGAACAA+TGG + chr8.1:58370486-58370505 None:intergenic 30.0%
TGAACAAGAAAGAAATCTCA+TGG - chr8.1:58370117-58370136 MS.gene068941:intron 30.0%
TTCCAGAATGGTAATATTAC+AGG - chr8.1:58370188-58370207 MS.gene068941:CDS 30.0%
TTCCCTAAAAATTTCCAGAA+TGG - chr8.1:58370176-58370195 MS.gene068941:CDS 30.0%
TTGTATTGTCAACTACTAGT+TGG - chr8.1:58370735-58370754 MS.gene068941:intron 30.0%
TTTGATCTCTGTCATATAGA+AGG - chr8.1:58371221-58371240 MS.gene068941:intron 30.0%
! ATAATGGGAACACATGAAAA+TGG + chr8.1:58369414-58369433 None:intergenic 30.0%
! ATTTTCATGTGTTCCCATTA+TGG - chr8.1:58369413-58369432 MS.gene068941:intron 30.0%
! CAAATATTACCTCATGGTTT+TGG - chr8.1:58367775-58367794 MS.gene068941:intron 30.0%
! TCTGTATGTCTCTTTGTTAT+AGG - chr8.1:58371591-58371610 MS.gene068941:intron 30.0%
! TGAAATTGTTGATAGGTATG+AGG - chr8.1:58368851-58368870 MS.gene068941:CDS 30.0%
! TTGTATATTTTGTCAAGCCA+AGG - chr8.1:58370840-58370859 MS.gene068941:intron 30.0%
!! ATAAGACTTTAGCCTTGTTT+AGG - chr8.1:58367997-58368016 MS.gene068941:intron 30.0%
!!! CTCATTGATTGGTTTTTTAG+TGG - chr8.1:58369841-58369860 MS.gene068941:intron 30.0%
AACAAGTTTCCAAAACCATG+AGG + chr8.1:58367787-58367806 None:intergenic 35.0%
AAGCAAACAATCAAAGACAG+TGG + chr8.1:58369805-58369824 None:intergenic 35.0%
AATGGGAACACATGAAAATG+GGG + chr8.1:58369412-58369431 None:intergenic 35.0%
ACAAACATATTTACCGCTTG+TGG + chr8.1:58368569-58368588 None:intergenic 35.0%
ACCATCGTATTCATTCCTAT+TGG - chr8.1:58368696-58368715 MS.gene068941:CDS 35.0%
AGATGAACAATGGAATACAC+TGG + chr8.1:58370476-58370495 None:intergenic 35.0%
ATAAGTGAAGCAACTCCAAT+AGG + chr8.1:58368714-58368733 None:intergenic 35.0%
ATTCACTCTTTGCACACAAT+AGG - chr8.1:58370991-58371010 MS.gene068941:intron 35.0%
CAAAGACATCCAAACAATTG+AGG + chr8.1:58369296-58369315 None:intergenic 35.0%
CACCTGTAATATTACCATTC+TGG + chr8.1:58370193-58370212 None:intergenic 35.0%
CAGAATGGTAATATTACAGG+TGG - chr8.1:58370191-58370210 MS.gene068941:intron 35.0%
CCATACAACTTCCTAAAAGT+TGG + chr8.1:58370623-58370642 None:intergenic 35.0%
GAAAACCCATGTATGAAGTA+AGG + chr8.1:58370956-58370975 None:intergenic 35.0%
GAAAGGTGATGAGATAAAAG+TGG - chr8.1:58370664-58370683 MS.gene068941:intron 35.0%
GAAGTTGTATGGAAAGATTG+AGG - chr8.1:58370631-58370650 MS.gene068941:intron 35.0%
GAGATCCTTCATATTTGTCA+TGG - chr8.1:58371621-58371640 MS.gene068941:CDS 35.0%
TAGCTTACGAACAATGTCAT+AGG - chr8.1:58368189-58368208 MS.gene068941:CDS 35.0%
TAGTTGAAGAATGTGCTATG+AGG - chr8.1:58368363-58368382 MS.gene068941:intron 35.0%
TCCAATAGGAATGAATACGA+TGG + chr8.1:58368700-58368719 None:intergenic 35.0%
TCTTTCAAGCTCTTTGCAAA+AGG - chr8.1:58367464-58367483 MS.gene068941:intron 35.0%
TGAAGTAAGGAAAGTTATCG+AGG + chr8.1:58370943-58370962 None:intergenic 35.0%
TTAGGGGTTTCAGCTTAATT+TGG - chr8.1:58367832-58367851 MS.gene068941:intron 35.0%
! AGTAAGCGATTTTCTTACCT+TGG + chr8.1:58370860-58370879 None:intergenic 35.0%
! ATTGGATTGGATTGAATTGG+TGG - chr8.1:58367501-58367520 MS.gene068941:intron 35.0%
! TCTCTTTGTTATAGGCAACT+TGG - chr8.1:58371599-58371618 MS.gene068941:intron 35.0%
! TTGAATTGGTGGTTCTGTTA+TGG - chr8.1:58367512-58367531 MS.gene068941:intron 35.0%
!! CCAACTTTTAGGAAGTTGTA+TGG - chr8.1:58370620-58370639 MS.gene068941:intron 35.0%
!! GAAATTGGTTTGAAGCAACA+AGG - chr8.1:58369237-58369256 MS.gene068941:intron 35.0%
!! GTTGTCGATCTAGCTATTTT+TGG + chr8.1:58369522-58369541 None:intergenic 35.0%
!! TGTCCTTGTGCAAGTTTTAT+CGG + chr8.1:58368931-58368950 None:intergenic 35.0%
ACACCATTTACATCACGTTC+AGG + chr8.1:58370014-58370033 None:intergenic 40.0%
AGGATCTTATCGTTTGGATG+CGG - chr8.1:58370585-58370604 MS.gene068941:intron 40.0%
ATAAGACCACAAGGTACGAT+TGG + chr8.1:58370038-58370057 None:intergenic 40.0%
ATTGCTTATCTCTCTGTTGG+AGG - chr8.1:58370785-58370804 MS.gene068941:intron 40.0%
ATTTCTACCAGAATCACCGA+CGG - chr8.1:58369142-58369161 MS.gene068941:intron 40.0%
CAAACGAGCCAATCTAATTG+TGG - chr8.1:58368269-58368288 MS.gene068941:CDS 40.0%
CACCATTTACATCACGTTCA+GGG + chr8.1:58370013-58370032 None:intergenic 40.0%
CCCTCAATTGCTCATCATTT+CGG + chr8.1:58369956-58369975 None:intergenic 40.0%
CCGAAATGATGAGCAATTGA+GGG - chr8.1:58369953-58369972 MS.gene068941:CDS 40.0%
GGAAAAGCAAACTCAACAAG+TGG - chr8.1:58369981-58370000 MS.gene068941:CDS 40.0%
GTTGTATGGAAAGATTGAGG+TGG - chr8.1:58370634-58370653 MS.gene068941:intron 40.0%
TATGAAACAGTTGAGTGAGC+AGG - chr8.1:58370562-58370581 MS.gene068941:intron 40.0%
TTCACATTTGCAATGCACAG+AGG - chr8.1:58369215-58369234 MS.gene068941:intron 40.0%
TTGCAATGCACAGAGGAAAT+TGG - chr8.1:58369222-58369241 MS.gene068941:intron 40.0%
TTGTCAACTACTAGTTGGCT+TGG - chr8.1:58370740-58370759 MS.gene068941:intron 40.0%
! TCATCTCAACGAGAGTATAC+CGG - chr8.1:58370217-58370236 MS.gene068941:intron 40.0%
! TGGAGGATTGAGCTTCTTTT+TGG - chr8.1:58370802-58370821 MS.gene068941:intron 40.0%
!! ATTGAGCTTCTTTTTGGCCA+TGG - chr8.1:58370808-58370827 MS.gene068941:intron 40.0%
!! TACCTTGTGGTCTTATAGCT+TGG - chr8.1:58370042-58370061 MS.gene068941:intron 40.0%
ACCGCTTGTGGTGTAAGAAT+AGG + chr8.1:58368557-58368576 None:intergenic 45.0%
AGCAGGAGGATCTTATCGTT+TGG - chr8.1:58370579-58370598 MS.gene068941:intron 45.0%
ATTGAGGTGGATCTGGAGAA+AGG - chr8.1:58370647-58370666 MS.gene068941:intron 45.0%
CACTCTGCTCGATAACTTAC+TGG - chr8.1:58371279-58371298 MS.gene068941:intron 45.0%
CAGAGAGATAAGCAATGCCA+AGG + chr8.1:58370781-58370800 None:intergenic 45.0%
CATGGAATAGGAACCCATCA+GGG - chr8.1:58371639-58371658 MS.gene068941:CDS 45.0%
CTCCAAGCTATAAGACCACA+AGG + chr8.1:58370047-58370066 None:intergenic 45.0%
CTGCCGATAAAACTTGCACA+AGG - chr8.1:58368925-58368944 MS.gene068941:intron 45.0%
GACATCCAAACAATTGAGGG+AGG + chr8.1:58369292-58369311 None:intergenic 45.0%
GACCCTGAACGTGATGTAAA+TGG - chr8.1:58370008-58370027 MS.gene068941:CDS 45.0%
GCCGAAATGATGAGCAATTG+AGG - chr8.1:58369952-58369971 MS.gene068941:CDS 45.0%
GCCTATTCTTACACCACAAG+CGG - chr8.1:58368553-58368572 MS.gene068941:intron 45.0%
GGCATTGCTTATCTCTCTGT+TGG - chr8.1:58370782-58370801 MS.gene068941:intron 45.0%
GGTGGAAAGAATGACTTCCT+TGG - chr8.1:58370761-58370780 MS.gene068941:intron 45.0%
GTAAGAATAGGCTTGCATGC+TGG + chr8.1:58368545-58368564 None:intergenic 45.0%
GTTATGGCAACAACTAGCGT+TGG - chr8.1:58367528-58367547 MS.gene068941:intron 45.0%
TCATGGAATAGGAACCCATC+AGG - chr8.1:58371638-58371657 MS.gene068941:CDS 45.0%
TGGAAAGATTGAGGTGGATC+TGG - chr8.1:58370640-58370659 MS.gene068941:intron 45.0%
!! TCAACTACTAGTTGGCTTGG+TGG - chr8.1:58370743-58370762 MS.gene068941:intron 45.0%
!!! TAATTATAATATATACTTTT+CGG - chr8.1:58371465-58371484 MS.gene068941:intron 5.0%
AAGATCATTGGACCCAACGC+TGG + chr8.1:58367225-58367244 None:intergenic 50.0%
CAATGTACCGTCGGTGATTC+TGG + chr8.1:58369152-58369171 None:intergenic 50.0%
CAGCATGCGTACCGTCAAAT+TGG - chr8.1:58368874-58368893 MS.gene068941:CDS 50.0%
GAAACAGTTGAGTGAGCAGG+AGG - chr8.1:58370565-58370584 MS.gene068941:intron 50.0%
GATGAGCAATTGAGGGATGC+TGG - chr8.1:58369960-58369979 MS.gene068941:CDS 50.0%
GCACAAGGACACTGCATGTA+TGG - chr8.1:58368940-58368959 MS.gene068941:intron 50.0%
GCGTACCTCCCTCAATTGTT+TGG - chr8.1:58369284-58369303 MS.gene068941:intron 50.0%
! CTGCGGCTTTGCCAACTTTT+AGG - chr8.1:58370609-58370628 MS.gene068941:intron 50.0%
! TATCGTTTGGATGCGGACTG+CGG - chr8.1:58370592-58370611 MS.gene068941:intron 50.0%
GGTGTGCCAATCGTACCTTG+TGG - chr8.1:58370029-58370048 MS.gene068941:intron 55.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 58367212 58371667 58367212 ID=MS.gene068941
chr8.1 mRNA 58367212 58371667 58367212 ID=MS.gene068941.t1;Parent=MS.gene068941
chr8.1 exon 58371601 58371667 58371601 ID=MS.gene068941.t1.exon1;Parent=MS.gene068941.t1
chr8.1 CDS 58371601 58371667 58371601 ID=cds.MS.gene068941.t1;Parent=MS.gene068941.t1
chr8.1 exon 58370305 58370363 58370305 ID=MS.gene068941.t1.exon2;Parent=MS.gene068941.t1
chr8.1 CDS 58370305 58370363 58370305 ID=cds.MS.gene068941.t1;Parent=MS.gene068941.t1
chr8.1 exon 58370133 58370207 58370133 ID=MS.gene068941.t1.exon3;Parent=MS.gene068941.t1
chr8.1 CDS 58370133 58370207 58370133 ID=cds.MS.gene068941.t1;Parent=MS.gene068941.t1
chr8.1 exon 58369923 58370033 58369923 ID=MS.gene068941.t1.exon4;Parent=MS.gene068941.t1
chr8.1 CDS 58369923 58370033 58369923 ID=cds.MS.gene068941.t1;Parent=MS.gene068941.t1
chr8.1 exon 58369716 58369786 58369716 ID=MS.gene068941.t1.exon5;Parent=MS.gene068941.t1
chr8.1 CDS 58369716 58369786 58369716 ID=cds.MS.gene068941.t1;Parent=MS.gene068941.t1
chr8.1 exon 58368641 58368938 58368641 ID=MS.gene068941.t1.exon6;Parent=MS.gene068941.t1
chr8.1 CDS 58368641 58368938 58368641 ID=cds.MS.gene068941.t1;Parent=MS.gene068941.t1
chr8.1 exon 58368018 58368307 58368018 ID=MS.gene068941.t1.exon7;Parent=MS.gene068941.t1
chr8.1 CDS 58368018 58368307 58368018 ID=cds.MS.gene068941.t1;Parent=MS.gene068941.t1
chr8.1 exon 58367212 58367266 58367212 ID=MS.gene068941.t1.exon8;Parent=MS.gene068941.t1
chr8.1 CDS 58367212 58367266 58367212 ID=cds.MS.gene068941.t1;Parent=MS.gene068941.t1
Gene Sequence

>MS.gene068941

ATGGCAACAACCAGCGTTGGGTCCAATGATCTTACTACAAATAGAAGACAAACAAAACGACCCAAGTGTAAGCTTTTTTCTATTAATTCTTTTTTAGGGTTTTGAGCTCATTTTGTTCATGCCCATGTTTTGTTTTTTCTAATTTGGTTCTGTTTCTTATGTAAATTTTGTATTTTTATGTTCATTTTTTTAGGGGTTTAGTTCTATTTCATCTAGATAAGACTTAGATTATTTTCAAGTTATCTTCTTTGTTCTTTCAAGCTCTTTGCAAAAGGTTAATTCTTTCATTATTGGATTGGATTGAATTGGTGGTTCTGTTATGGCAACAACTAGCGTTGGATCCAATGATCTTACTTCTAATAGAAGACAAACAAAACGACCCAAGTGTGAGATTTTTTGTTTTATGTTATGATTACTTCTTTTTTAGGGTTTTGAGCTCATTTTGTTCATGCCCATGTTTTGTTTTTTCTGATTTGGTTCTGTTTCTTATGTAAATTTTGTATTTTTATGTTCATTTTTTAAGGGGTTTAGTTATATTTCATCAAGATAAGACTTAGATTAAGCAAATATTACCTCATGGTTTTGGAAACTTGTTTGACATGTTTATTGTTACTTGTTTTTTAGGGGTTTCAGCTTAATTTGGTGATGCACATGTTTTGTTTTTTGTAATTTGACTGTGTTTGTTATGTAAATTTGTGATTTTTCTTTCTGAGTCTATGTTGTGTTTTAAAAGTTCAATTTTTTTTTTTTTGGTTAATTTTTGAAGGGATTTTTATTTCATGAATATAAGACTTTAGCCTTGTTTAGGTAAACAACTTATTTGCAGCTTATACAACATGCACTTATCATCATAAGTGCTTATGTTTAAGCTATTACTATAGCAAAAGATAAAATAAAGTTAAATGGTAAACTTAAAAAAGTTAAATGGTAAACTGTCTTCATAAGTTATCTTGGAGAACTTATCAATGAGTTGAAAATAGCTTACGAACAATGTCATAGGCTGTTATCATAAGTTCTTTCTAAATAGTCTCACAAAACTTATGTCAGTAGATAAGCTCAAACGAGCCAATCTAATTGTGGCTTTTGTTTAAGCAAATATTACTCCATGGTTTTTGAAACTTAATTTGACATGTTGAGTATTATGGTTGAGCTAGTTGAAGAATGTGCTATGAGGTTATGAATGATTTATGGAGTTAGACAATATGTTTGGATTTGAAAATAATTGTATGTATTTGGGTTCTATGTGTTTCTACTTGCTAAATTTGCTGACTAGAGTTCTCTTTGAAAATTTTCATGTCTTTCAGACTCAAAGTTTACGCAACAAGAATTACCAGCATGCAAGCCTATTCTTACACCACAAGCGGTAAATATGTTTGTTTGTATATAGTGTTTGTGATTATCTATTTAGCCTATATGCATTTAGAATTCACTATTTACATGGTATATTACTTTCTTTTCAGGTTATTTCAGCATTCTTGATTGTCACCATCGTATTCATTCCTATTGGAGTTGCTTCACTTATTGCTTCACGAGATGTACGCTTGAATGCAATATTGTTTTTCGATTTCTGTTTACAGCTCTAAATAGTATGCGTATGCTAACTTTTAATTTGTTATAACTGATCTTTGTATCAGGTTGTTGAAATTGTTGATAGGTATGAGGCAGCATGCGTACCGTCAAATTGGACAGATAAAGTAGCATACATTCAGAGTGCTGCCGATAAAACTTGCACAAGGACACTGCATGTATGGTTCATTAACTCCATTTTCTCTTTGTACTTGTTCCTATGTTATTTCTGCATTAACTCTGTTCTTATAATTGATGAATTGTGAATTCCAAATTTTGATGATCATTTGTTTTAAAAACTACTCTTATGAATAGGTGGAGAAGCGTATGAAGTCTCCTATCTATGTTTACTATCAGCTTGACAATTTCTACCAGAATCACCGACGGTACATTGCTTTTTATTTCTCATGAATCAGACATTCATTTTCTGTTTGAATTTCACATTTGCAATGCACAGAGGAAATTGGTTTGAAGCAACAAGGATCTCATGTTCTTTAGATTTTGTTGCGTACCTCCCTCAATTGTTTGGATGTCTTTGTTGAGTGACAACTTTCATCTTGTCATTGTGATTTGTGAAATTTTATACATTGTTCTCCTATGAATAAATGTTGTTTGTTGCAATACATTTTGTCCCCATTTTCATGTGTTCCCATTATGGTTTTCTAATGTGAAAAAAAGGATTATTTGGTATCATTTAAGTTTGAGGAAAAAAACTTTATTGTTTATTGTAATAAATGATTGCCAAAAATAGCTAGATCGACAACTGAAATAAAGTTGATTTGCAAGCTACCATTTAAAATGCACGAAATGTTTTTACAAATGATTATAAAATTGTAGAGTTGTAGTTGTGATTCTGTTCTATAATTTGAACAACTTTACAGAATTAGTTAAAAGATAACTGTGAACTATTCGTGAGTTTAAATTTAAAGAGACGTTCATATGAACTTTGTTTTTCATGTATTCATCTTGCATTTAGAGTATACCTTTTGAATATAAATACAAATAATTATAGTTGTTTATGTCTCCACTGTCTTTGATTGTTTGCTTCGTTTTATAATTTCCACTCATTGATTGGTTTTTTAGTGGTGTAATCATATTCATATAATATATTGTATATTTGTTTATATTCTCATGAATGTTTTTTTTTATTTTTTTAAAAAAAGGTATGTGAAAAGCCGAAATGATGAGCAATTGAGGGATGCTGGAAAAGCAAACTCAACAAGTGGTTGTGACCCTGAACGTGATGTAAATGGTGTGCCAATCGTACCTTGTGGTCTTATAGCTTGGAGCATGTTCAATGATACATACAGCTTCTCACGCAACAACAATAATGTCGCAGTGAACAAGAAAGAAATCTCATGGAAAAGTGATAGAGATCATAAATTTGGAAGTGATGTTTTCCCTAAAAATTTCCAGAATGGTAATATTACAGGTGGTGCTCATCTCAACGAGAGTATACCGGTAAATTTTTTCACTTACTCTAAATTTCTTATAAGCTTATGGATACAAATATAGAAAAGTTACATGAGAGATCTTCTGAAACAAGTTCGCTGCAAAAGATAATTTGAACTTGTAAAAATTATTGCTAAAAATTCAGATACTGCATGATTCTTTCTTAAAACCAATCTTTAAATAGATCAATCATTTGTAAAACCAAATGTGACATACACATTTTTGTTCCTGATTTTATGATTTCCAGTGTATTCCATTGTTCATCTTGTGATTGTATCAACATTCTCAATTTGCTTGCATCAATGAGATAAGTCACTCACTTTCTGAATGTTTATGAAACAGTTGAGTGAGCAGGAGGATCTTATCGTTTGGATGCGGACTGCGGCTTTGCCAACTTTTAGGAAGTTGTATGGAAAGATTGAGGTGGATCTGGAGAAAGGTGATGAGATAAAAGTGGTATTGCAGAATCGCTACAACACATATAGTTTTAGTGGCAAGAAGAAGCTTGTATTGTCAACTACTAGTTGGCTTGGTGGAAAGAATGACTTCCTTGGCATTGCTTATCTCTCTGTTGGAGGATTGAGCTTCTTTTTGGCCATGGCTTTTACTATTGTATATTTTGTCAAGCCAAGGTAAGAAAATCGCTTACTGCTTTCTACTATGCAAATTCATTTTGAATGATGATGTTCATTGGAGCGTTCTCAATAACTCCTCGATAACTTTCCTTACTTCATACATGGGTTTTCTAATATATTGAATGCATTCACTCTTTGCACACAATAGGTTGTTTTGCTTTTTACTAACCAACATAATTTTTATTAGCTCAACCTTAAGTCAATTTGAATATAAACTACGATTTGCTCGAGTTAGTTATATGTTAAGTGCATTGCAAATTAAGTATATATTTATGAAAAACTTTTTGATATGTGAGAGTTTTCTTCATGACATAATTAAGATGTAAGAAGAAAAAAAAAAAGGTTTAAATTTGATTTTTGATCTCTGTCATATAGAAGGTATTCAATTACACCGATGTAATACTTGGGTAGTATCACTCTGCTCGATAACTTACTGGATATACATACTTTATAAAACTGTCTGTTAATTGAAAGTTTATATCATATTGACGTCTTTGTAAATTTGTACATAAATCTAAAATATTTTAATATGTTATTGAGATGCGTCCAGATTAACATCTTACATGTTCTTATTAAATGATGTTAATCTTTTAATCCCTGTAATTATAATATATACTTTTCGGTCCCTTATATGAATCAGTTGAAATTGTGATGTTTAGTGGTTAACACAAGCTCATATTTGAACAAACATGCATAATTGCAATTTCGAATATGATTATCTACTAATCTGTATGTCTCTTTGTTATAGGCAACTTGGAGATCCTTCATATTTGTCATGGAATAGGAACCCATCAGGGCACTGA

Protein sequence

>MS.gene068941.t1

MATTSVGSNDLTTNRRQTKRPKYSKFTQQELPACKPILTPQAVISAFLIVTIVFIPIGVASLIASRDVVEIVDRYEAACVPSNWTDKVAYIQSAADKTCTRTLHVEKRMKSPIYVYYQLDNFYQNHRRYVKSRNDEQLRDAGKANSTSGCDPERDVNGVPIVPCGLIAWSMFNDTYSFSRNNNNVAVNKKEISWKSDRDHKFGSDVFPKNFQNGNITGGAHLNESIPLSEQEDLIVWMRTAALPTFRKLYGKIEVDLEKGDEIKVVLQNRYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLSVGGLSFFLAMAFTIVYFVKPRQLGDPSYLSWNRNPSGH