Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42752.t1 | RHN40641.1 | 98.5 | 341 | 5 | 0 | 1 | 341 | 1 | 341 | 4.10E-191 | 677.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42752.t1 | Q9SLK2 | 75.5 | 327 | 79 | 1 | 15 | 340 | 22 | 348 | 2.1e-140 | 500.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42752.t1 | A0A396GKC1 | 98.5 | 341 | 5 | 0 | 1 | 341 | 1 | 341 | 2.9e-191 | 677.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene42752 | 0.834277 | 3.29E-56 | -1.69E-46 |
| MS.gene049419 | MS.gene42752 | -0.801384 | 9.24E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene42752 | 0.822135 | 2.78E-53 | -1.69E-46 |
| MS.gene049983 | MS.gene42752 | 0.815113 | 1.09E-51 | -1.69E-46 |
| MS.gene050359 | MS.gene42752 | 0.818504 | 1.89E-52 | -1.69E-46 |
| MS.gene050414 | MS.gene42752 | 0.842622 | 2.31E-58 | -1.69E-46 |
| MS.gene050646 | MS.gene42752 | 0.844839 | 5.90E-59 | -1.69E-46 |
| MS.gene050654 | MS.gene42752 | 0.806996 | 6.27E-50 | -1.69E-46 |
| MS.gene050945 | MS.gene42752 | 0.819343 | 1.22E-52 | -1.69E-46 |
| MS.gene051043 | MS.gene42752 | 0.868576 | 5.89E-66 | -1.69E-46 |
| MS.gene052016 | MS.gene42752 | 0.800678 | 1.29E-48 | -1.69E-46 |
| MS.gene052296 | MS.gene42752 | 0.802866 | 4.58E-49 | -1.69E-46 |
| MS.gene052533 | MS.gene42752 | 0.809823 | 1.56E-50 | -1.69E-46 |
| MS.gene053726 | MS.gene42752 | 0.838141 | 3.43E-57 | -1.69E-46 |
| MS.gene053879 | MS.gene42752 | 0.819871 | 9.25E-53 | -1.69E-46 |
| MS.gene054413 | MS.gene42752 | 0.807842 | 4.15E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene42752 | 0.844478 | 7.37E-59 | -1.69E-46 |
| MS.gene054893 | MS.gene42752 | 0.856006 | 4.31E-62 | -1.69E-46 |
| MS.gene055150 | MS.gene42752 | 0.814157 | 1.78E-51 | -1.69E-46 |
| MS.gene057174 | MS.gene42752 | 0.87081 | 1.10E-66 | -1.69E-46 |
| MS.gene057622 | MS.gene42752 | 0.818316 | 2.09E-52 | -1.69E-46 |
| MS.gene058095 | MS.gene42752 | 0.83832 | 3.08E-57 | -1.69E-46 |
| MS.gene05878 | MS.gene42752 | 0.81382 | 2.11E-51 | -1.69E-46 |
| MS.gene059007 | MS.gene42752 | 0.81214 | 4.92E-51 | -1.69E-46 |
| MS.gene05952 | MS.gene42752 | 0.837259 | 5.78E-57 | -1.69E-46 |
| MS.gene060259 | MS.gene42752 | 0.803304 | 3.72E-49 | -1.69E-46 |
| MS.gene060522 | MS.gene42752 | 0.806378 | 8.47E-50 | -1.69E-46 |
| MS.gene060933 | MS.gene42752 | 0.84531 | 4.40E-59 | -1.69E-46 |
| MS.gene060935 | MS.gene42752 | 0.806991 | 6.29E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene42752 | 0.821991 | 3.01E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene036314 | MS.gene42752 | PPI |
| MS.gene033804 | MS.gene42752 | PPI |
| MS.gene068941 | MS.gene42752 | PPI |
| MS.gene066879 | MS.gene42752 | PPI |
| MS.gene69865 | MS.gene42752 | PPI |
| MS.gene36100 | MS.gene42752 | PPI |
| MS.gene78497 | MS.gene42752 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42752.t1 | MTR_2g067760 | 78.979 | 333 | 69 | 1 | 10 | 341 | 16 | 348 | 0.0 | 546 |
| MS.gene42752.t1 | MTR_2g101400 | 62.242 | 339 | 125 | 3 | 3 | 338 | 5 | 343 | 6.43e-156 | 441 |
| MS.gene42752.t1 | MTR_7g086110 | 62.893 | 318 | 114 | 4 | 24 | 337 | 4 | 321 | 3.39e-147 | 418 |
| MS.gene42752.t1 | MTR_2g451450 | 59.077 | 325 | 131 | 2 | 2 | 324 | 7 | 331 | 5.26e-141 | 402 |
| MS.gene42752.t1 | MTR_2g451450 | 65.351 | 228 | 79 | 0 | 109 | 336 | 1 | 228 | 7.92e-109 | 317 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42752.t1 | AT1G54320 | 75.305 | 328 | 80 | 1 | 15 | 341 | 22 | 349 | 0.0 | 520 |
| MS.gene42752.t1 | AT3G12740 | 73.780 | 328 | 85 | 1 | 15 | 341 | 23 | 350 | 0.0 | 517 |
| MS.gene42752.t1 | AT1G16360 | 65.698 | 344 | 113 | 2 | 2 | 340 | 5 | 348 | 1.45e-172 | 483 |
| MS.gene42752.t1 | AT1G79450 | 69.113 | 327 | 100 | 1 | 15 | 340 | 22 | 348 | 8.65e-172 | 481 |
| MS.gene42752.t1 | AT1G16360 | 67.925 | 318 | 101 | 1 | 24 | 340 | 17 | 334 | 1.26e-166 | 468 |
| MS.gene42752.t1 | AT1G16360 | 66.776 | 304 | 100 | 1 | 24 | 326 | 17 | 320 | 4.73e-155 | 438 |
| MS.gene42752.t1 | AT1G79450 | 70.073 | 274 | 81 | 1 | 68 | 340 | 8 | 281 | 3.18e-143 | 406 |
| MS.gene42752.t1 | AT5G46150 | 56.535 | 329 | 138 | 3 | 10 | 336 | 13 | 338 | 2.05e-136 | 391 |
| MS.gene42752.t1 | AT5G46150 | 56.535 | 329 | 138 | 3 | 10 | 336 | 13 | 338 | 2.05e-136 | 391 |
| MS.gene42752.t1 | AT5G46150 | 57.098 | 317 | 134 | 2 | 10 | 324 | 13 | 329 | 2.10e-134 | 386 |
| MS.gene42752.t1 | AT1G16360 | 61.836 | 207 | 78 | 1 | 24 | 229 | 17 | 223 | 1.49e-93 | 278 |
| MS.gene42752.t1 | AT1G16360 | 61.836 | 207 | 78 | 1 | 24 | 229 | 17 | 223 | 1.49e-93 | 278 |
| MS.gene42752.t1 | AT5G46150 | 57.767 | 206 | 85 | 2 | 25 | 228 | 28 | 233 | 1.09e-89 | 269 |
Find 63 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGTACCGTCGGTGATTC+TGG | 0.266413 | 8.2:+54887538 | None:intergenic |
| AGTGATAGAGATCATAAATT+TGG | 0.272931 | 8.2:-54886544 | MS.gene42752:CDS |
| CCCTCAATTGCTCATCATTT+CGG | 0.279039 | 8.2:+54886734 | None:intergenic |
| TTCCAGAATGGTAATATTAC+AGG | 0.280420 | 8.2:-54886499 | MS.gene42752:CDS |
| CACCTGTAATATTACCATTC+TGG | 0.312585 | 8.2:+54886497 | None:intergenic |
| CTTCATATTTGTCATGGAAT+AGG | 0.326806 | 8.2:-54885063 | MS.gene42752:CDS |
| CAGCATGCGTACCGTCAAAT+TGG | 0.350399 | 8.2:-54887813 | MS.gene42752:CDS |
| TCTATTTGTAGTAAGATCAT+TGG | 0.358198 | 8.2:+54889162 | None:intergenic |
| ACCATCGTATTCATTCCTAT+TGG | 0.381424 | 8.2:-54887991 | MS.gene42752:CDS |
| CCATACAACTTCCTAAAAGT+TGG | 0.399756 | 8.2:+54886067 | None:intergenic |
| TGGAAAGATTGAGGTGGATC+TGG | 0.409137 | 8.2:-54886047 | MS.gene42752:CDS |
| GGGATTGCTTATCTCTCTGT+TGG | 0.413229 | 8.2:-54885905 | MS.gene42752:CDS |
| ACTTTATCTGTCCAATTTGA+CGG | 0.415199 | 8.2:+54887802 | None:intergenic |
| GTGGAAAGAATGACTTCCTT+GGG | 0.417288 | 8.2:-54885925 | MS.gene42752:CDS |
| AGCAGGAGGATCTTATCGTT+TGG | 0.422953 | 8.2:-54886108 | MS.gene42752:CDS |
| GACCCTGAACGTGATGTAAA+TGG | 0.428391 | 8.2:-54886679 | MS.gene42752:CDS |
| TACCTTGTGGTCTTATAGCT+TGG | 0.435333 | 8.2:-54886645 | MS.gene42752:CDS |
| AGGTTGTTGAAATTGTTGAT+AGG | 0.436935 | 8.2:-54887843 | MS.gene42752:CDS |
| ATAAGTGAAGCAACTCCAAT+AGG | 0.440672 | 8.2:+54887976 | None:intergenic |
| GGTGGAAAGAATGACTTCCT+TGG | 0.448097 | 8.2:-54885926 | MS.gene42752:CDS |
| ACCGCTTGTGGTGTAAGAAT+AGG | 0.455359 | 8.2:+54888133 | None:intergenic |
| ATTGCTTATCTCTCTGTTGG+AGG | 0.456603 | 8.2:-54885902 | MS.gene42752:CDS |
| ACACCATTTACATCACGTTC+AGG | 0.458429 | 8.2:+54886676 | None:intergenic |
| TCTCTTTGTTATAGGCAACT+TGG | 0.460443 | 8.2:-54885091 | MS.gene42752:intron |
| GCCGAAATGATGAGCAATTG+AGG | 0.464516 | 8.2:-54886735 | MS.gene42752:CDS |
| GAGATCCTTCATATTTGTCA+TGG | 0.476748 | 8.2:-54885069 | MS.gene42752:CDS |
| TCATGGAATAGGAACCCATC+AGG | 0.477360 | 8.2:-54885052 | MS.gene42752:CDS |
| TTGTATTGTCAACTACTAGT+TGG | 0.492500 | 8.2:-54885952 | MS.gene42752:CDS |
| GATGAGCAATTGAGGGATGC+TGG | 0.508544 | 8.2:-54886727 | MS.gene42752:CDS |
| AGCTGATAGTAAACATAGAT+AGG | 0.508601 | 8.2:+54887573 | None:intergenic |
| TGAACAAGAAAGAAATCTCA+TGG | 0.508781 | 8.2:-54886570 | MS.gene42752:CDS |
| TTTCAGCTCAGTGCCCTGAT+GGG | 0.513086 | 8.2:+54885038 | None:intergenic |
| CCGAAATGATGAGCAATTGA+GGG | 0.522900 | 8.2:-54886734 | MS.gene42752:CDS |
| ACAAACATATTTACCGCTTG+TGG | 0.523482 | 8.2:+54888121 | None:intergenic |
| TCAACTACTAGTTGGCTTGG+TGG | 0.523709 | 8.2:-54885944 | MS.gene42752:CDS |
| TATGAAACAGTTGAGTGAGC+AGG | 0.525938 | 8.2:-54886125 | MS.gene42752:intron |
| ATTGAGGTGGATCTGGAGAA+AGG | 0.526388 | 8.2:-54886040 | MS.gene42752:CDS |
| CTATTCCATGACAAATATGA+AGG | 0.529494 | 8.2:+54885064 | None:intergenic |
| TGAAATTGTTGATAGGTATG+AGG | 0.531187 | 8.2:-54887836 | MS.gene42752:CDS |
| GAAGTTGTATGGAAAGATTG+AGG | 0.531483 | 8.2:-54886056 | MS.gene42752:CDS |
| GTTATGGCAACAACCAGCGT+TGG | 0.544670 | 8.2:-54889187 | MS.gene42752:CDS |
| TTGTCAACTACTAGTTGGCT+TGG | 0.552516 | 8.2:-54885947 | MS.gene42752:CDS |
| CACCATTTACATCACGTTCA+GGG | 0.557158 | 8.2:+54886677 | None:intergenic |
| GCCTATTCTTACACCACAAG+CGG | 0.573542 | 8.2:-54888134 | MS.gene42752:intron |
| GAAAGGCGATGAGATAAAAG+TGG | 0.575697 | 8.2:-54886023 | MS.gene42752:CDS |
| ATAAGACCACAAGGTACGAT+TGG | 0.580186 | 8.2:+54886652 | None:intergenic |
| TATCGTTTGGATGCGGACTG+CGG | 0.588232 | 8.2:-54886095 | MS.gene42752:CDS |
| AGGATCTTATCGTTTGGATG+CGG | 0.592427 | 8.2:-54886102 | MS.gene42752:CDS |
| TCATCTCAACGAGAGTATAC+CGG | 0.595675 | 8.2:-54886470 | MS.gene42752:intron |
| CAGAATGGTAATATTACAGG+TGG | 0.609886 | 8.2:-54886496 | MS.gene42752:CDS |
| CTCCAAGCTATAAGACCACA+AGG | 0.620489 | 8.2:+54886643 | None:intergenic |
| GTTGTATGGAAAGATTGAGG+TGG | 0.624167 | 8.2:-54886053 | MS.gene42752:CDS |
| CAGAGAGATAAGCAATCCCA+AGG | 0.625244 | 8.2:+54885909 | None:intergenic |
| CATGGAATAGGAACCCATCA+GGG | 0.630665 | 8.2:-54885051 | MS.gene42752:CDS |
| ATATACAATAGTAAAAGCCA+TGG | 0.632004 | 8.2:+54885862 | None:intergenic |
| AAGATCATTGGATCCAACGC+TGG | 0.632825 | 8.2:+54889174 | None:intergenic |
| GAAACAGTTGAGTGAGCAGG+AGG | 0.635104 | 8.2:-54886122 | MS.gene42752:intron |
| GGAAAAGCAAACTCAACAAG+TGG | 0.654434 | 8.2:-54886706 | MS.gene42752:CDS |
| GTAAGAATAGGCTTGCATGC+TGG | 0.654457 | 8.2:+54888145 | None:intergenic |
| CTGCCGATAAAACTTGCACA+AGG | 0.669954 | 8.2:-54887762 | MS.gene42752:CDS |
| TCCAATAGGAATGAATACGA+TGG | 0.696774 | 8.2:+54887990 | None:intergenic |
| ATTTCTACCAGAATCACCGA+CGG | 0.732060 | 8.2:-54887545 | MS.gene42752:intron |
| GGTGTGCCAATCGTACCTTG+TGG | 0.829864 | 8.2:-54886658 | MS.gene42752:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTATTTTTATTTTTT+TGG | - | chr8.2:54885449-54885468 | MS.gene42752:intron | 0.0% |
| !!! | TTTTTTATTTTTTTAAAAAA+AGG | - | chr8.2:54887461-54887480 | MS.gene42752:intron | 0.0% |
| !! | AAAGATAAAATAAAGTTAAA+TGG | - | chr8.2:54885635-54885654 | MS.gene42752:intron | 10.0% |
| !! | AAAGTATATATTATAATTAC+AGG | + | chr8.2:54889003-54889022 | None:intergenic | 10.0% |
| !! | AAGTATATATTATAATTACA+GGG | + | chr8.2:54889002-54889021 | None:intergenic | 10.0% |
| !! | TATTTGTATTTATATTCAAA+AGG | + | chr8.2:54887305-54887324 | None:intergenic | 10.0% |
| !!! | ATTTTTATGTTCATTTTTTA+AGG | - | chr8.2:54885213-54885232 | MS.gene42752:intron | 10.0% |
| !!! | TTATTATTACTTGTTTTTTA+GGG | - | chr8.2:54885316-54885335 | MS.gene42752:intron | 10.0% |
| !!! | TTTATTATTACTTGTTTTTT+AGG | - | chr8.2:54885315-54885334 | MS.gene42752:intron | 10.0% |
| !!! | TTTTTATGTTCATTTTTTAA+GGG | - | chr8.2:54885214-54885233 | MS.gene42752:intron | 10.0% |
| !!! | TTTTTTGTTATTCTTTTTTA+GGG | - | chr8.2:54885118-54885137 | MS.gene42752:intron | 10.0% |
| !! | AAATTACAAAAAACAAAACA+TGG | + | chr8.2:54885365-54885384 | None:intergenic | 15.0% |
| !! | AATTACAAAAAACAAAACAT+GGG | + | chr8.2:54885364-54885383 | None:intergenic | 15.0% |
| !! | GTAAACTTAAAAAAGTTAAA+TGG | - | chr8.2:54885657-54885676 | MS.gene42752:intron | 15.0% |
| !!! | CTTTTTTGTTATTCTTTTTT+AGG | - | chr8.2:54885117-54885136 | MS.gene42752:intron | 15.0% |
| !!! | TTTATATTCAAATTGACTTA+AGG | + | chr8.2:54888602-54888621 | None:intergenic | 15.0% |
| !!! | TTTTATGTTCATTTTTTAAG+GGG | - | chr8.2:54885215-54885234 | MS.gene42752:intron | 15.0% |
| !!! | TTTTTTGGTTAATTTTTGAA+GGG | - | chr8.2:54885464-54885483 | MS.gene42752:intron | 15.0% |
| !!! | TTTTTTGTCAAATTTTTGAA+GGG | - | chr8.2:54885497-54885516 | MS.gene42752:intron | 15.0% |
| !!! | TTTTTTTGGTTAATTTTTGA+AGG | - | chr8.2:54885463-54885482 | MS.gene42752:intron | 15.0% |
| !!! | TTTTTTTGTCAAATTTTTGA+AGG | - | chr8.2:54885496-54885515 | MS.gene42752:intron | 15.0% |
| !! | AAATCAGAAAAAACAAAACA+TGG | + | chr8.2:54885167-54885186 | None:intergenic | 20.0% |
| !! | AAATTAAGTTTCAAAAACCA+TGG | + | chr8.2:54885860-54885879 | None:intergenic | 20.0% |
| !! | AACAAACAACATTTATTCAT+AGG | + | chr8.2:54886917-54886936 | None:intergenic | 20.0% |
| !! | AACAAATGATCATCAAAATT+TGG | + | chr8.2:54886592-54886611 | None:intergenic | 20.0% |
| !! | AAGATGTAAGAAGAAAAAAA+AGG | - | chr8.2:54888724-54888743 | MS.gene42752:intron | 20.0% |
| !! | AATCAGAAAAAACAAAACAT+GGG | + | chr8.2:54885166-54885185 | None:intergenic | 20.0% |
| !! | ATGTGAAAAAAAGGATTATT+TGG | - | chr8.2:54886985-54887004 | MS.gene42752:intron | 20.0% |
| !! | CTAAATTTCTTATAAGCTTA+TGG | - | chr8.2:54887800-54887819 | MS.gene42752:CDS | 20.0% |
| !! | GACAATAATTGTATGTATTT+GGG | - | chr8.2:54885968-54885987 | MS.gene42752:CDS | 20.0% |
| !! | TAAAAACTACTCTTATGAAT+AGG | - | chr8.2:54886613-54886632 | MS.gene42752:CDS | 20.0% |
| !! | TGACAATAATTGTATGTATT+TGG | - | chr8.2:54885967-54885986 | MS.gene42752:CDS | 20.0% |
| !! | TGAGCTAATAAAAATTATGT+TGG | + | chr8.2:54888578-54888597 | None:intergenic | 20.0% |
| !! | TGATTGATCTATTTAAAGAT+TGG | + | chr8.2:54887944-54887963 | None:intergenic | 20.0% |
| !!! | ATGTTTTGTTTTTTCTGATT+TGG | - | chr8.2:54885166-54885185 | MS.gene42752:intron | 20.0% |
| !!! | TTTAGAATTCACTATTTACA+TGG | - | chr8.2:54886172-54886191 | MS.gene42752:intron | 20.0% |
| !!! | TTTATGTTCATTTTTTAAGG+GGG | - | chr8.2:54885216-54885235 | MS.gene42752:intron | 20.0% |
| ! | AAAAATGTGTATGTCACATT+TGG | + | chr8.2:54887976-54887995 | None:intergenic | 25.0% |
| ! | AGTGAATTCTAAATGCATAT+AGG | + | chr8.2:54886165-54886184 | None:intergenic | 25.0% |
| ! | AGTGATAGAGATCATAAATT+TGG | - | chr8.2:54887685-54887704 | MS.gene42752:intron | 25.0% |
| ! | AGTTAATGCAGAAATAACAT+AGG | + | chr8.2:54886540-54886559 | None:intergenic | 25.0% |
| ! | ATAACAAAAAAGCTTACACT+TGG | + | chr8.2:54885109-54885128 | None:intergenic | 25.0% |
| ! | ATAAGTTGTTTACCTAAACA+AGG | + | chr8.2:54885552-54885571 | None:intergenic | 25.0% |
| ! | ATATACAATAGTAAAAGCCA+TGG | + | chr8.2:54888370-54888389 | None:intergenic | 25.0% |
| ! | ATGAGGTTATGAATGATTTA+TGG | - | chr8.2:54885922-54885941 | MS.gene42752:CDS | 25.0% |
| ! | ATTAAGCAAATATTACCTCA+TGG | - | chr8.2:54885270-54885289 | MS.gene42752:intron | 25.0% |
| ! | ATTTGACATGTTGAGTATTA+TGG | - | chr8.2:54885876-54885895 | MS.gene42752:CDS | 25.0% |
| ! | TAACAAAAAAGCTTACACTT+GGG | + | chr8.2:54885108-54885127 | None:intergenic | 25.0% |
| ! | TATAATTTCCACTCATTGAT+TGG | - | chr8.2:54887372-54887391 | MS.gene42752:intron | 25.0% |
| ! | TCACATTAGAAAACCATAAT+GGG | + | chr8.2:54886971-54886990 | None:intergenic | 25.0% |
| ! | TCTATTTGTAGTAAGATCAT+TGG | + | chr8.2:54885070-54885089 | None:intergenic | 25.0% |
| ! | TTATAACTGATCTTTGTATC+AGG | - | chr8.2:54886366-54886385 | MS.gene42752:intron | 25.0% |
| ! | TTCACATTAGAAAACCATAA+TGG | + | chr8.2:54886972-54886991 | None:intergenic | 25.0% |
| ! | TTTAAGCAAATATTACTCCA+TGG | - | chr8.2:54885840-54885859 | MS.gene42752:intron | 25.0% |
| !! | AACATTTCGTGCATTTTAAA+TGG | + | chr8.2:54887112-54887131 | None:intergenic | 25.0% |
| !! | GGTTTTCTAATGTGAAAAAA+AGG | - | chr8.2:54886976-54886995 | MS.gene42752:intron | 25.0% |
| !! | TGGTATATTACTTTCTTTTC+AGG | - | chr8.2:54886192-54886211 | MS.gene42752:intron | 25.0% |
| !! | TTTGGTATCATTTAAGTTTG+AGG | - | chr8.2:54887003-54887022 | MS.gene42752:intron | 25.0% |
| !!! | TACAACACATATAGTTTTAG+TGG | - | chr8.2:54888243-54888262 | MS.gene42752:intron | 25.0% |
| !!! | TACCATTCTGGAAATTTTTA+GGG | + | chr8.2:54887723-54887742 | None:intergenic | 25.0% |
| !!! | TTACCATTCTGGAAATTTTT+AGG | + | chr8.2:54887724-54887743 | None:intergenic | 25.0% |
| !!! | TTAGGGTTTTTAGCTTAATT+TGG | - | chr8.2:54885333-54885352 | MS.gene42752:intron | 25.0% |
| !!! | TTTTGAATGATGATGTTCAT+TGG | - | chr8.2:54888443-54888462 | MS.gene42752:intron | 25.0% |
| AAACTACTCTTATGAATAGG+TGG | - | chr8.2:54886616-54886635 | MS.gene42752:CDS | 30.0% | |
| AAAGACATCCAAACAATTGA+GGG | + | chr8.2:54886837-54886856 | None:intergenic | 30.0% | |
| AACAAAAGCCACAATTAGAT+TGG | + | chr8.2:54885822-54885841 | None:intergenic | 30.0% | |
| AATAAAAAGCAATGTACCGT+CGG | + | chr8.2:54886703-54886722 | None:intergenic | 30.0% | |
| AATTACACCGATGTAATACT+TGG | - | chr8.2:54888788-54888807 | MS.gene42752:intron | 30.0% | |
| ACTGTCTTCATAAGTTATCT+TGG | - | chr8.2:54885683-54885702 | MS.gene42752:intron | 30.0% | |
| ACTTTATCTGTCCAATTTGA+CGG | + | chr8.2:54886430-54886449 | None:intergenic | 30.0% | |
| AGCTGATAGTAAACATAGAT+AGG | + | chr8.2:54886659-54886678 | None:intergenic | 30.0% | |
| AGGTTGTTGAAATTGTTGAT+AGG | - | chr8.2:54886386-54886405 | MS.gene42752:intron | 30.0% | |
| ATACTACCCAAGTATTACAT+CGG | + | chr8.2:54888798-54888817 | None:intergenic | 30.0% | |
| ATGGAGTTAGACAATATGTT+TGG | - | chr8.2:54885941-54885960 | MS.gene42752:CDS | 30.0% | |
| ATTACACCGATGTAATACTT+GGG | - | chr8.2:54888789-54888808 | MS.gene42752:intron | 30.0% | |
| ATTAGAAAACCCATGTATGA+AGG | + | chr8.2:54888502-54888521 | None:intergenic | 30.0% | |
| CTAAAAAACCAATCAATGAG+TGG | + | chr8.2:54887383-54887402 | None:intergenic | 30.0% | |
| CTATTCCATGACAAATATGA+AGG | + | chr8.2:54889168-54889187 | None:intergenic | 30.0% | |
| CTTCATATTTGTCATGGAAT+AGG | - | chr8.2:54889166-54889185 | MS.gene42752:CDS | 30.0% | |
| GAACAAGTACAAAGAGAAAA+TGG | + | chr8.2:54886518-54886537 | None:intergenic | 30.0% | |
| GAACATGTAAGATGTTAATC+TGG | + | chr8.2:54888953-54888972 | None:intergenic | 30.0% | |
| GAGTAAGTGAAAAAACTTAC+CGG | + | chr8.2:54887781-54887800 | None:intergenic | 30.0% | |
| TAATGGGAACACATGAAAAT+GGG | + | chr8.2:54886955-54886974 | None:intergenic | 30.0% | |
| TGAACAAGAAAGAAATCTCA+TGG | - | chr8.2:54887659-54887678 | MS.gene42752:intron | 30.0% | |
| TTCCAGAATGGTAATATTAC+AGG | - | chr8.2:54887730-54887749 | MS.gene42752:intron | 30.0% | |
| TTCCCTAAAAATTTCCAGAA+TGG | - | chr8.2:54887718-54887737 | MS.gene42752:intron | 30.0% | |
| TTGTATTGTCAACTACTAGT+TGG | - | chr8.2:54888277-54888296 | MS.gene42752:intron | 30.0% | |
| TTTGATCTCTGTCATATAGA+AGG | - | chr8.2:54888760-54888779 | MS.gene42752:intron | 30.0% | |
| ! | ATAATGGGAACACATGAAAA+TGG | + | chr8.2:54886956-54886975 | None:intergenic | 30.0% |
| ! | ATTTTCATGTGTTCCCATTA+TGG | - | chr8.2:54886955-54886974 | MS.gene42752:intron | 30.0% |
| ! | CAAATATTACCTCATGGTTT+TGG | - | chr8.2:54885276-54885295 | MS.gene42752:intron | 30.0% |
| ! | TCTGTATGTCTCTTTGTTAT+AGG | - | chr8.2:54889130-54889149 | MS.gene42752:intron | 30.0% |
| ! | TGAAATTGTTGATAGGTATG+AGG | - | chr8.2:54886393-54886412 | MS.gene42752:intron | 30.0% |
| ! | TTGTATATTTTGTCAAGCCA+AGG | - | chr8.2:54888382-54888401 | MS.gene42752:intron | 30.0% |
| !! | ATAAGACTTTAGCCTTGTTT+AGG | - | chr8.2:54885537-54885556 | MS.gene42752:intron | 30.0% |
| !!! | CTCATTGATTGGTTTTTTAG+TGG | - | chr8.2:54887383-54887402 | MS.gene42752:intron | 30.0% |
| AACAAGTTTCCAAAACCATG+AGG | + | chr8.2:54885288-54885307 | None:intergenic | 35.0% | |
| AACTTTCCTTCCTTCATACA+TGG | - | chr8.2:54888489-54888508 | MS.gene42752:intron | 35.0% | |
| AAGCAAACAATCAAAGACAG+TGG | + | chr8.2:54887347-54887366 | None:intergenic | 35.0% | |
| AATGGGAACACATGAAAATG+GGG | + | chr8.2:54886954-54886973 | None:intergenic | 35.0% | |
| ACAAACATATTTACCGCTTG+TGG | + | chr8.2:54886111-54886130 | None:intergenic | 35.0% | |
| ACACTGGAAATCACAAAATC+AGG | + | chr8.2:54888002-54888021 | None:intergenic | 35.0% | |
| ACCATCGTATTCATTCCTAT+TGG | - | chr8.2:54886238-54886257 | MS.gene42752:intron | 35.0% | |
| ACTTTCCTTCCTTCATACAT+GGG | - | chr8.2:54888490-54888509 | MS.gene42752:intron | 35.0% | |
| ATAAGTGAAGCAACTCCAAT+AGG | + | chr8.2:54886256-54886275 | None:intergenic | 35.0% | |
| ATTCACTCTTTGCACACAAT+AGG | - | chr8.2:54888533-54888552 | MS.gene42752:intron | 35.0% | |
| CAAAGACATCCAAACAATTG+AGG | + | chr8.2:54886838-54886857 | None:intergenic | 35.0% | |
| CACCTGTAATATTACCATTC+TGG | + | chr8.2:54887735-54887754 | None:intergenic | 35.0% | |
| CAGAATGGTAATATTACAGG+TGG | - | chr8.2:54887733-54887752 | MS.gene42752:intron | 35.0% | |
| CCATACAACTTCCTAAAAGT+TGG | + | chr8.2:54888165-54888184 | None:intergenic | 35.0% | |
| GAAGTTGTATGGAAAGATTG+AGG | - | chr8.2:54888173-54888192 | MS.gene42752:CDS | 35.0% | |
| GAGATCCTTCATATTTGTCA+TGG | - | chr8.2:54889160-54889179 | MS.gene42752:CDS | 35.0% | |
| TACAATCACAAGATGAACAG+TGG | + | chr8.2:54888028-54888047 | None:intergenic | 35.0% | |
| TAGCTTACGAACAATGTCAT+AGG | - | chr8.2:54885731-54885750 | MS.gene42752:intron | 35.0% | |
| TAGTTGAAGAATGTGCTATG+AGG | - | chr8.2:54885905-54885924 | MS.gene42752:CDS | 35.0% | |
| TCCAATAGGAATGAATACGA+TGG | + | chr8.2:54886242-54886261 | None:intergenic | 35.0% | |
| ! | AGTAAGCGATTTTCTTACCT+TGG | + | chr8.2:54888402-54888421 | None:intergenic | 35.0% |
| ! | TCTCTTTGTTATAGGCAACT+TGG | - | chr8.2:54889138-54889157 | MS.gene42752:intron | 35.0% |
| !! | CCAACTTTTAGGAAGTTGTA+TGG | - | chr8.2:54888162-54888181 | MS.gene42752:CDS | 35.0% |
| !! | GAAATTGGTTTGAAGCAACA+AGG | - | chr8.2:54886779-54886798 | MS.gene42752:intron | 35.0% |
| !! | GTTGTCGATCTAGCTATTTT+TGG | + | chr8.2:54887064-54887083 | None:intergenic | 35.0% |
| !! | TGTCCTTGTGCAAGTTTTAT+CGG | + | chr8.2:54886473-54886492 | None:intergenic | 35.0% |
| ACACCATTTACATCACGTTC+AGG | + | chr8.2:54887556-54887575 | None:intergenic | 40.0% | |
| AGATGAACAGTGGAATACAC+TGG | + | chr8.2:54888018-54888037 | None:intergenic | 40.0% | |
| AGGATCTTATCGTTTGGATG+CGG | - | chr8.2:54888127-54888146 | MS.gene42752:intron | 40.0% | |
| ATAAGACCACAAGGTACGAT+TGG | + | chr8.2:54887580-54887599 | None:intergenic | 40.0% | |
| ATTGCTTATCTCTCTGTTGG+AGG | - | chr8.2:54888327-54888346 | MS.gene42752:intron | 40.0% | |
| ATTTCTACCAGAATCACCGA+CGG | - | chr8.2:54886684-54886703 | MS.gene42752:CDS | 40.0% | |
| CAAACGAGCCAATCTAATTG+TGG | - | chr8.2:54885811-54885830 | MS.gene42752:intron | 40.0% | |
| CACCATTTACATCACGTTCA+GGG | + | chr8.2:54887555-54887574 | None:intergenic | 40.0% | |
| CACTCTGCTCAATAACTTAC+TGG | - | chr8.2:54888818-54888837 | MS.gene42752:intron | 40.0% | |
| CCCTCAATTGCTCATCATTT+CGG | + | chr8.2:54887498-54887517 | None:intergenic | 40.0% | |
| CCGAAATGATGAGCAATTGA+GGG | - | chr8.2:54887495-54887514 | MS.gene42752:intron | 40.0% | |
| GAAAACCCATGTATGAAGGA+AGG | + | chr8.2:54888498-54888517 | None:intergenic | 40.0% | |
| GAAAGGCGATGAGATAAAAG+TGG | - | chr8.2:54888206-54888225 | MS.gene42752:intron | 40.0% | |
| GGAAAAGCAAACTCAACAAG+TGG | - | chr8.2:54887523-54887542 | MS.gene42752:intron | 40.0% | |
| GTGGAAAGAATGACTTCCTT+GGG | - | chr8.2:54888304-54888323 | MS.gene42752:intron | 40.0% | |
| GTTGTATGGAAAGATTGAGG+TGG | - | chr8.2:54888176-54888195 | MS.gene42752:intron | 40.0% | |
| TATGAAACAGTTGAGTGAGC+AGG | - | chr8.2:54888104-54888123 | MS.gene42752:intron | 40.0% | |
| TGAAGGAAGGAAAGTTATCG+AGG | + | chr8.2:54888485-54888504 | None:intergenic | 40.0% | |
| TTCACATTTGCAATGCACAG+AGG | - | chr8.2:54886757-54886776 | MS.gene42752:intron | 40.0% | |
| TTGCAATGCACAGAGGAAAT+TGG | - | chr8.2:54886764-54886783 | MS.gene42752:intron | 40.0% | |
| TTGTCAACTACTAGTTGGCT+TGG | - | chr8.2:54888282-54888301 | MS.gene42752:intron | 40.0% | |
| ! | TCATCTCAACGAGAGTATAC+CGG | - | chr8.2:54887759-54887778 | MS.gene42752:CDS | 40.0% |
| ! | TGGAGGATTGAGCTTCTTTT+TGG | - | chr8.2:54888344-54888363 | MS.gene42752:intron | 40.0% |
| !! | ATTGAGCTTCTTTTTGGCCA+TGG | - | chr8.2:54888350-54888369 | MS.gene42752:intron | 40.0% |
| !! | TACCTTGTGGTCTTATAGCT+TGG | - | chr8.2:54887584-54887603 | MS.gene42752:CDS | 40.0% |
| AAGATCATTGGATCCAACGC+TGG | + | chr8.2:54885058-54885077 | None:intergenic | 45.0% | |
| ACCGCTTGTGGTGTAAGAAT+AGG | + | chr8.2:54886099-54886118 | None:intergenic | 45.0% | |
| AGCAGGAGGATCTTATCGTT+TGG | - | chr8.2:54888121-54888140 | MS.gene42752:intron | 45.0% | |
| ATTGAGGTGGATCTGGAGAA+AGG | - | chr8.2:54888189-54888208 | MS.gene42752:intron | 45.0% | |
| CAGAGAGATAAGCAATCCCA+AGG | + | chr8.2:54888323-54888342 | None:intergenic | 45.0% | |
| CATGGAATAGGAACCCATCA+GGG | - | chr8.2:54889178-54889197 | MS.gene42752:CDS | 45.0% | |
| CTCCAAGCTATAAGACCACA+AGG | + | chr8.2:54887589-54887608 | None:intergenic | 45.0% | |
| CTGCCGATAAAACTTGCACA+AGG | - | chr8.2:54886467-54886486 | MS.gene42752:intron | 45.0% | |
| GACATCCAAACAATTGAGGG+AGG | + | chr8.2:54886834-54886853 | None:intergenic | 45.0% | |
| GACCCTGAACGTGATGTAAA+TGG | - | chr8.2:54887550-54887569 | MS.gene42752:CDS | 45.0% | |
| GCCGAAATGATGAGCAATTG+AGG | - | chr8.2:54887494-54887513 | MS.gene42752:intron | 45.0% | |
| GCCTATTCTTACACCACAAG+CGG | - | chr8.2:54886095-54886114 | MS.gene42752:CDS | 45.0% | |
| GGGATTGCTTATCTCTCTGT+TGG | - | chr8.2:54888324-54888343 | MS.gene42752:intron | 45.0% | |
| GGTGGAAAGAATGACTTCCT+TGG | - | chr8.2:54888303-54888322 | MS.gene42752:intron | 45.0% | |
| GTAAGAATAGGCTTGCATGC+TGG | + | chr8.2:54886087-54886106 | None:intergenic | 45.0% | |
| TCATGGAATAGGAACCCATC+AGG | - | chr8.2:54889177-54889196 | MS.gene42752:CDS | 45.0% | |
| TGGAAAGATTGAGGTGGATC+TGG | - | chr8.2:54888182-54888201 | MS.gene42752:intron | 45.0% | |
| !! | TCAACTACTAGTTGGCTTGG+TGG | - | chr8.2:54888285-54888304 | MS.gene42752:intron | 45.0% |
| CAATGTACCGTCGGTGATTC+TGG | + | chr8.2:54886694-54886713 | None:intergenic | 50.0% | |
| CAGCATGCGTACCGTCAAAT+TGG | - | chr8.2:54886416-54886435 | MS.gene42752:intron | 50.0% | |
| GAAACAGTTGAGTGAGCAGG+AGG | - | chr8.2:54888107-54888126 | MS.gene42752:intron | 50.0% | |
| GATGAGCAATTGAGGGATGC+TGG | - | chr8.2:54887502-54887521 | MS.gene42752:intron | 50.0% | |
| GCACAAGGACACTGCATGTA+TGG | - | chr8.2:54886482-54886501 | MS.gene42752:CDS | 50.0% | |
| GCGTACCTCCCTCAATTGTT+TGG | - | chr8.2:54886826-54886845 | MS.gene42752:intron | 50.0% | |
| ! | CTGCGGCTTTGCCAACTTTT+AGG | - | chr8.2:54888151-54888170 | MS.gene42752:CDS | 50.0% |
| ! | TATCGTTTGGATGCGGACTG+CGG | - | chr8.2:54888134-54888153 | MS.gene42752:intron | 50.0% |
| GGTGTGCCAATCGTACCTTG+TGG | - | chr8.2:54887571-54887590 | MS.gene42752:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 54885045 | 54889206 | 54885045 | ID=MS.gene42752 |
| chr8.2 | mRNA | 54885045 | 54889206 | 54885045 | ID=MS.gene42752.t1;Parent=MS.gene42752 |
| chr8.2 | exon | 54889140 | 54889206 | 54889140 | ID=MS.gene42752.t1.exon1;Parent=MS.gene42752.t1 |
| chr8.2 | CDS | 54889140 | 54889206 | 54889140 | ID=cds.MS.gene42752.t1;Parent=MS.gene42752.t1 |
| chr8.2 | exon | 54888135 | 54888193 | 54888135 | ID=MS.gene42752.t1.exon2;Parent=MS.gene42752.t1 |
| chr8.2 | CDS | 54888135 | 54888193 | 54888135 | ID=cds.MS.gene42752.t1;Parent=MS.gene42752.t1 |
| chr8.2 | exon | 54887963 | 54888037 | 54887963 | ID=MS.gene42752.t1.exon3;Parent=MS.gene42752.t1 |
| chr8.2 | CDS | 54887963 | 54888037 | 54887963 | ID=cds.MS.gene42752.t1;Parent=MS.gene42752.t1 |
| chr8.2 | exon | 54887753 | 54887863 | 54887753 | ID=MS.gene42752.t1.exon4;Parent=MS.gene42752.t1 |
| chr8.2 | CDS | 54887753 | 54887863 | 54887753 | ID=cds.MS.gene42752.t1;Parent=MS.gene42752.t1 |
| chr8.2 | exon | 54887546 | 54887616 | 54887546 | ID=MS.gene42752.t1.exon5;Parent=MS.gene42752.t1 |
| chr8.2 | CDS | 54887546 | 54887616 | 54887546 | ID=cds.MS.gene42752.t1;Parent=MS.gene42752.t1 |
| chr8.2 | exon | 54886471 | 54886768 | 54886471 | ID=MS.gene42752.t1.exon6;Parent=MS.gene42752.t1 |
| chr8.2 | CDS | 54886471 | 54886768 | 54886471 | ID=cds.MS.gene42752.t1;Parent=MS.gene42752.t1 |
| chr8.2 | exon | 54885848 | 54886137 | 54885848 | ID=MS.gene42752.t1.exon7;Parent=MS.gene42752.t1 |
| chr8.2 | CDS | 54885848 | 54886137 | 54885848 | ID=cds.MS.gene42752.t1;Parent=MS.gene42752.t1 |
| chr8.2 | exon | 54885045 | 54885099 | 54885045 | ID=MS.gene42752.t1.exon8;Parent=MS.gene42752.t1 |
| chr8.2 | CDS | 54885045 | 54885099 | 54885045 | ID=cds.MS.gene42752.t1;Parent=MS.gene42752.t1 |
| Gene Sequence |
| Protein sequence |
