Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066879.t1 | RHN40641.1 | 98.2 | 341 | 6 | 0 | 1 | 341 | 1 | 341 | 1.20E-190 | 675.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066879.t1 | Q9SLK2 | 75.5 | 327 | 79 | 1 | 15 | 340 | 22 | 348 | 9.6e-141 | 501.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066879.t1 | A0A396GKC1 | 98.2 | 341 | 6 | 0 | 1 | 341 | 1 | 341 | 8.5e-191 | 675.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene066879 | 0.812777 | 3.57E-51 | -1.69E-46 |
| MS.gene049197 | MS.gene066879 | 0.813473 | 2.51E-51 | -1.69E-46 |
| MS.gene04919 | MS.gene066879 | 0.834651 | 2.65E-56 | -1.69E-46 |
| MS.gene04920 | MS.gene066879 | 0.8352 | 1.93E-56 | -1.69E-46 |
| MS.gene049283 | MS.gene066879 | 0.87275 | 2.50E-67 | -1.69E-46 |
| MS.gene049413 | MS.gene066879 | 0.800338 | 1.51E-48 | -1.69E-46 |
| MS.gene049499 | MS.gene066879 | 0.829728 | 4.37E-55 | -1.69E-46 |
| MS.gene049983 | MS.gene066879 | 0.822977 | 1.77E-53 | -1.69E-46 |
| MS.gene04998 | MS.gene066879 | 0.817644 | 2.96E-52 | -1.69E-46 |
| MS.gene050379 | MS.gene066879 | 0.802715 | 4.92E-49 | -1.69E-46 |
| MS.gene050414 | MS.gene066879 | 0.849677 | 2.77E-60 | -1.69E-46 |
| MS.gene050646 | MS.gene066879 | 0.828619 | 8.13E-55 | -1.69E-46 |
| MS.gene050945 | MS.gene066879 | 0.813884 | 2.04E-51 | -1.69E-46 |
| MS.gene051043 | MS.gene066879 | 0.809199 | 2.13E-50 | -1.69E-46 |
| MS.gene051699 | MS.gene066879 | 0.805769 | 1.14E-49 | -1.69E-46 |
| MS.gene051821 | MS.gene066879 | 0.828345 | 9.47E-55 | -1.69E-46 |
| MS.gene051823 | MS.gene066879 | 0.81364 | 2.31E-51 | -1.69E-46 |
| MS.gene051832 | MS.gene066879 | 0.81956 | 1.09E-52 | -1.69E-46 |
| MS.gene051959 | MS.gene066879 | 0.841899 | 3.59E-58 | -1.69E-46 |
| MS.gene051960 | MS.gene066879 | 0.842986 | 1.85E-58 | -1.69E-46 |
| MS.gene052016 | MS.gene066879 | 0.831767 | 1.39E-55 | -1.69E-46 |
| MS.gene052040 | MS.gene066879 | 0.806041 | 9.97E-50 | -1.69E-46 |
| MS.gene052118 | MS.gene066879 | 0.83307 | 6.59E-56 | -1.69E-46 |
| MS.gene052533 | MS.gene066879 | 0.833694 | 4.60E-56 | -1.69E-46 |
| MS.gene052570 | MS.gene066879 | 0.82802 | 1.13E-54 | -1.69E-46 |
| MS.gene053620 | MS.gene066879 | 0.803085 | 4.12E-49 | -1.69E-46 |
| MS.gene053931 | MS.gene066879 | 0.803217 | 3.87E-49 | -1.69E-46 |
| MS.gene054178 | MS.gene066879 | 0.826208 | 3.08E-54 | -1.69E-46 |
| MS.gene054490 | MS.gene066879 | 0.803268 | 3.78E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene066879 | 0.887261 | 1.67E-72 | -1.69E-46 |
| MS.gene054893 | MS.gene066879 | 0.88527 | 9.40E-72 | -1.69E-46 |
| MS.gene054957 | MS.gene066879 | 0.836936 | 6.99E-57 | -1.69E-46 |
| MS.gene055150 | MS.gene066879 | 0.827472 | 1.54E-54 | -1.69E-46 |
| MS.gene05539 | MS.gene066879 | 0.800099 | 1.69E-48 | -1.69E-46 |
| MS.gene05624 | MS.gene066879 | 0.807703 | 4.44E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene066879 | 0.845748 | 3.35E-59 | -1.69E-46 |
| MS.gene056973 | MS.gene066879 | 0.824928 | 6.19E-54 | -1.69E-46 |
| MS.gene057102 | MS.gene066879 | 0.82153 | 3.84E-53 | -1.69E-46 |
| MS.gene057155 | MS.gene066879 | 0.815253 | 1.02E-51 | -1.69E-46 |
| MS.gene057174 | MS.gene066879 | 0.864802 | 9.35E-65 | -1.69E-46 |
| MS.gene057208 | MS.gene066879 | 0.808615 | 2.84E-50 | -1.69E-46 |
| MS.gene057622 | MS.gene066879 | 0.839066 | 1.98E-57 | -1.69E-46 |
| MS.gene058095 | MS.gene066879 | 0.806748 | 7.08E-50 | -1.69E-46 |
| MS.gene058429 | MS.gene066879 | 0.801503 | 8.73E-49 | -1.69E-46 |
| MS.gene058592 | MS.gene066879 | 0.816709 | 4.81E-52 | -1.69E-46 |
| MS.gene058781 | MS.gene066879 | 0.803658 | 3.14E-49 | -1.69E-46 |
| MS.gene05878 | MS.gene066879 | 0.833116 | 6.42E-56 | -1.69E-46 |
| MS.gene05952 | MS.gene066879 | 0.864054 | 1.60E-64 | -1.69E-46 |
| MS.gene05956 | MS.gene066879 | 0.808474 | 3.04E-50 | -1.69E-46 |
| MS.gene059686 | MS.gene066879 | 0.836934 | 6.99E-57 | -1.69E-46 |
| MS.gene05985 | MS.gene066879 | -0.841399 | 4.87E-58 | -1.69E-46 |
| MS.gene06023 | MS.gene066879 | 0.845415 | 4.12E-59 | -1.69E-46 |
| MS.gene060259 | MS.gene066879 | 0.818949 | 1.50E-52 | -1.69E-46 |
| MS.gene060412 | MS.gene066879 | 0.814005 | 1.92E-51 | -1.69E-46 |
| MS.gene060413 | MS.gene066879 | 0.835072 | 2.08E-56 | -1.69E-46 |
| MS.gene060435 | MS.gene066879 | 0.802411 | 5.68E-49 | -1.69E-46 |
| MS.gene060522 | MS.gene066879 | 0.853993 | 1.65E-61 | -1.69E-46 |
| MS.gene060785 | MS.gene066879 | 0.809976 | 1.45E-50 | -1.69E-46 |
| MS.gene060933 | MS.gene066879 | 0.865059 | 7.77E-65 | -1.69E-46 |
| MS.gene060935 | MS.gene066879 | 0.830211 | 3.34E-55 | -1.69E-46 |
| MS.gene060937 | MS.gene066879 | 0.847044 | 1.48E-59 | -1.69E-46 |
| MS.gene060964 | MS.gene066879 | 0.800624 | 1.32E-48 | -1.69E-46 |
| MS.gene061100 | MS.gene066879 | 0.811413 | 7.09E-51 | -1.69E-46 |
| MS.gene061188 | MS.gene066879 | 0.801785 | 7.64E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene69865 | MS.gene066879 | PPI |
| MS.gene36100 | MS.gene066879 | PPI |
| MS.gene066879 | MS.gene42752 | PPI |
| MS.gene036314 | MS.gene066879 | PPI |
| MS.gene033804 | MS.gene066879 | PPI |
| MS.gene068941 | MS.gene066879 | PPI |
| MS.gene066879 | MS.gene78497 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066879.t1 | MTR_2g067760 | 78.979 | 333 | 69 | 1 | 10 | 341 | 16 | 348 | 0.0 | 546 |
| MS.gene066879.t1 | MTR_2g101400 | 62.242 | 339 | 125 | 3 | 3 | 338 | 5 | 343 | 9.03e-156 | 441 |
| MS.gene066879.t1 | MTR_7g086110 | 62.893 | 318 | 114 | 4 | 24 | 337 | 4 | 321 | 2.97e-147 | 418 |
| MS.gene066879.t1 | MTR_2g451450 | 59.077 | 325 | 131 | 2 | 2 | 324 | 7 | 331 | 6.00e-141 | 402 |
| MS.gene066879.t1 | MTR_2g451450 | 65.351 | 228 | 79 | 0 | 109 | 336 | 1 | 228 | 1.05e-108 | 317 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066879.t1 | AT1G54320 | 75.305 | 328 | 80 | 1 | 15 | 341 | 22 | 349 | 0.0 | 520 |
| MS.gene066879.t1 | AT3G12740 | 73.780 | 328 | 85 | 1 | 15 | 341 | 23 | 350 | 0.0 | 517 |
| MS.gene066879.t1 | AT1G16360 | 65.407 | 344 | 114 | 2 | 2 | 340 | 5 | 348 | 5.90e-172 | 482 |
| MS.gene066879.t1 | AT1G79450 | 69.113 | 327 | 100 | 1 | 15 | 340 | 22 | 348 | 6.37e-172 | 481 |
| MS.gene066879.t1 | AT1G16360 | 67.610 | 318 | 102 | 1 | 24 | 340 | 17 | 334 | 5.97e-166 | 466 |
| MS.gene066879.t1 | AT1G16360 | 66.447 | 304 | 101 | 1 | 24 | 326 | 17 | 320 | 1.98e-154 | 437 |
| MS.gene066879.t1 | AT1G79450 | 70.073 | 274 | 81 | 1 | 68 | 340 | 8 | 281 | 2.76e-143 | 406 |
| MS.gene066879.t1 | AT5G46150 | 56.535 | 329 | 138 | 3 | 10 | 336 | 13 | 338 | 3.07e-136 | 391 |
| MS.gene066879.t1 | AT5G46150 | 56.535 | 329 | 138 | 3 | 10 | 336 | 13 | 338 | 3.07e-136 | 391 |
| MS.gene066879.t1 | AT5G46150 | 57.098 | 317 | 134 | 2 | 10 | 324 | 13 | 329 | 2.85e-134 | 385 |
| MS.gene066879.t1 | AT1G16360 | 61.836 | 207 | 78 | 1 | 24 | 229 | 17 | 223 | 1.35e-93 | 278 |
| MS.gene066879.t1 | AT1G16360 | 61.836 | 207 | 78 | 1 | 24 | 229 | 17 | 223 | 1.35e-93 | 278 |
| MS.gene066879.t1 | AT5G46150 | 57.767 | 206 | 85 | 2 | 25 | 228 | 28 | 233 | 1.21e-89 | 269 |
Find 63 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGTACCGTCGGTGATTC+TGG | 0.266413 | 8.4:+54382213 | None:intergenic |
| AGTGATAGAGATCATAAATT+TGG | 0.272931 | 8.4:-54381213 | MS.gene066879:CDS |
| CCCTCAATTGCTCATCATTT+CGG | 0.279039 | 8.4:+54381403 | None:intergenic |
| TTCCAGAATGGTAATATTAC+AGG | 0.280420 | 8.4:-54381168 | MS.gene066879:CDS |
| ACTTTATCTGTCCAATTTGA+TGG | 0.309049 | 8.4:+54382477 | None:intergenic |
| CACCTGTAATATTACCATTC+TGG | 0.312585 | 8.4:+54381166 | None:intergenic |
| CTTCATATTTGTCATGGAAT+AGG | 0.326806 | 8.4:-54379799 | MS.gene066879:CDS |
| CAGCATGCGTACCATCAAAT+TGG | 0.368233 | 8.4:-54382488 | MS.gene066879:CDS |
| ACCATCGTATTCATTCCTAT+TGG | 0.381424 | 8.4:-54382666 | MS.gene066879:CDS |
| CCATACAACTTCCTAAAAGT+TGG | 0.399756 | 8.4:+54380736 | None:intergenic |
| TCTATTAGTAGTAAGATCAT+TGG | 0.407770 | 8.4:+54383788 | None:intergenic |
| TGGAAAGATTGAGGTGGATC+TGG | 0.409137 | 8.4:-54380716 | MS.gene066879:CDS |
| TTCTCAGTTCAGTGACCTGA+TGG | 0.411610 | 8.4:+54379773 | None:intergenic |
| GGGATTGCTTATCTCTCTGT+TGG | 0.413229 | 8.4:-54380574 | MS.gene066879:CDS |
| GTGGAAAGAATGACTTCCTT+GGG | 0.417288 | 8.4:-54380594 | MS.gene066879:CDS |
| AGCAGGAGGATCTTATCGTT+TGG | 0.422953 | 8.4:-54380777 | MS.gene066879:CDS |
| GACCCTGAACGTGATGTAAA+TGG | 0.428391 | 8.4:-54381348 | MS.gene066879:CDS |
| TACCTTGTGGTCTTATAGCT+TGG | 0.435333 | 8.4:-54381314 | MS.gene066879:CDS |
| AGGTTGTTGAAATTGTTGAT+AGG | 0.436935 | 8.4:-54382518 | MS.gene066879:CDS |
| ATAAGTGAAGCAACTCCAAT+AGG | 0.440672 | 8.4:+54382651 | None:intergenic |
| GGTGGAAAGAATGACTTCCT+TGG | 0.448097 | 8.4:-54380595 | MS.gene066879:CDS |
| ACCGCTTGTGGTGTAAGAAT+AGG | 0.455359 | 8.4:+54382808 | None:intergenic |
| ATTGCTTATCTCTCTGTTGG+AGG | 0.456603 | 8.4:-54380571 | MS.gene066879:CDS |
| ACACCATTTACATCACGTTC+AGG | 0.458429 | 8.4:+54381345 | None:intergenic |
| TCTCTTTGTTATAGGCAACT+TGG | 0.460443 | 8.4:-54379827 | MS.gene066879:intron |
| GCCGAAATGATGAGCAATTG+AGG | 0.464516 | 8.4:-54381404 | MS.gene066879:CDS |
| GAGATCCTTCATATTTGTCA+TGG | 0.476748 | 8.4:-54379805 | MS.gene066879:CDS |
| TTGTATTGTCAACTACTAGT+TGG | 0.492500 | 8.4:-54380621 | MS.gene066879:CDS |
| ATTGAGGTGGATCTGGAGAA+AGG | 0.496339 | 8.4:-54380709 | MS.gene066879:CDS |
| GATGAGCAATTGAGGGATGC+TGG | 0.508544 | 8.4:-54381396 | MS.gene066879:CDS |
| AGCTGATAGTAAACATAGAT+AGG | 0.508601 | 8.4:+54382248 | None:intergenic |
| TGAACAAGAAAGAAATCTCA+TGG | 0.508781 | 8.4:-54381239 | MS.gene066879:CDS |
| CCGAAATGATGAGCAATTGA+GGG | 0.522900 | 8.4:-54381403 | MS.gene066879:CDS |
| ACAAACATATTTACCGCTTG+TGG | 0.523482 | 8.4:+54382796 | None:intergenic |
| TCAACTACTAGTTGGCTTGG+TGG | 0.523709 | 8.4:-54380613 | MS.gene066879:CDS |
| TATGAAACAGTTGAGTGAGC+AGG | 0.525938 | 8.4:-54380794 | MS.gene066879:intron |
| CTATTCCATGACAAATATGA+AGG | 0.529494 | 8.4:+54379800 | None:intergenic |
| TGAAATTGTTGATAGGTATG+AGG | 0.531187 | 8.4:-54382511 | MS.gene066879:CDS |
| GAAGTTGTATGGAAAGATTG+AGG | 0.531483 | 8.4:-54380725 | MS.gene066879:CDS |
| TCATGGAATAGGAACCCATC+AGG | 0.540204 | 8.4:-54379788 | MS.gene066879:CDS |
| GTTATGGCAACAACCAGCGT+TGG | 0.544670 | 8.4:-54383813 | MS.gene066879:CDS |
| TCTCAGTTCAGTGACCTGAT+GGG | 0.549779 | 8.4:+54379774 | None:intergenic |
| TTGTCAACTACTAGTTGGCT+TGG | 0.552516 | 8.4:-54380616 | MS.gene066879:CDS |
| CACCATTTACATCACGTTCA+GGG | 0.557158 | 8.4:+54381346 | None:intergenic |
| GCCTATTCTTACACCACAAG+CGG | 0.573542 | 8.4:-54382809 | MS.gene066879:intron |
| ATAAGACCACAAGGTACGAT+TGG | 0.580186 | 8.4:+54381321 | None:intergenic |
| TATCGTTTGGATGCGGACTG+CGG | 0.588232 | 8.4:-54380764 | MS.gene066879:CDS |
| AGGATCTTATCGTTTGGATG+CGG | 0.592427 | 8.4:-54380771 | MS.gene066879:CDS |
| TCATCTCAACGAGAGTATAC+CGG | 0.595675 | 8.4:-54381139 | MS.gene066879:intron |
| CAGAATGGTAATATTACAGG+TGG | 0.609886 | 8.4:-54381165 | MS.gene066879:CDS |
| CTCCAAGCTATAAGACCACA+AGG | 0.620489 | 8.4:+54381312 | None:intergenic |
| GTTGTATGGAAAGATTGAGG+TGG | 0.624167 | 8.4:-54380722 | MS.gene066879:CDS |
| CAGAGAGATAAGCAATCCCA+AGG | 0.625244 | 8.4:+54380578 | None:intergenic |
| ATATACAATAGTAAAAGCCA+TGG | 0.632004 | 8.4:+54380531 | None:intergenic |
| AAGATCATTGGATCCAACGC+TGG | 0.632825 | 8.4:+54383800 | None:intergenic |
| GAAACAGTTGAGTGAGCAGG+AGG | 0.635104 | 8.4:-54380791 | MS.gene066879:intron |
| GGAAAAGCAAACTCAACAAG+TGG | 0.654434 | 8.4:-54381375 | MS.gene066879:CDS |
| GTAAGAATAGGCTTGCATGC+TGG | 0.654457 | 8.4:+54382820 | None:intergenic |
| CTGCCGATAAAACTTGCACA+AGG | 0.669954 | 8.4:-54382437 | MS.gene066879:CDS |
| TCCAATAGGAATGAATACGA+TGG | 0.696774 | 8.4:+54382665 | None:intergenic |
| GAAAGGTGATGAGATAAACG+TGG | 0.699022 | 8.4:-54380692 | MS.gene066879:CDS |
| ACTTCTACCAGAATCACCGA+CGG | 0.729577 | 8.4:-54382220 | MS.gene066879:intron |
| GGTGTGCCAATCGTACCTTG+TGG | 0.829864 | 8.4:-54381327 | MS.gene066879:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTTTTTAAAAAAA+AGG | - | chr8.4:54382154-54382173 | MS.gene066879:intron | 0.0% |
| !! | AAAGTATATATTATAATTAC+AGG | + | chr8.4:54383629-54383648 | None:intergenic | 10.0% |
| !! | AAGTATATATTATAATTACA+GGG | + | chr8.4:54383628-54383647 | None:intergenic | 10.0% |
| !!! | TTTCTATTAATTCTTTTTTA+GGG | - | chr8.4:54379857-54379876 | MS.gene066879:intron | 10.0% |
| !!! | TTTTCTATTAATTCTTTTTT+AGG | - | chr8.4:54379856-54379875 | MS.gene066879:intron | 10.0% |
| !!! | TTTTTATGTTAATTTTTGAA+GGG | - | chr8.4:54380202-54380221 | MS.gene066879:intron | 10.0% |
| !!! | TTTTTATGTTCATTTTTTAA+GGG | - | chr8.4:54379954-54379973 | MS.gene066879:intron | 10.0% |
| !!! | TTTTTTATGTTAATTTTTGA+AGG | - | chr8.4:54380201-54380220 | MS.gene066879:intron | 10.0% |
| !!! | TTTTTTATGTTCATTTTTTA+AGG | - | chr8.4:54379953-54379972 | MS.gene066879:intron | 10.0% |
| !! | AAATTAAGTTTCAAAAATCA+TGG | + | chr8.4:54380547-54380566 | None:intergenic | 15.0% |
| !! | AAATTAGAAAAAACAAAACA+TGG | + | chr8.4:54379906-54379925 | None:intergenic | 15.0% |
| !! | AATTACAAAAAAAGAAAACA+TGG | + | chr8.4:54380106-54380125 | None:intergenic | 15.0% |
| !! | AATTAGAAAAAACAAAACAT+GGG | + | chr8.4:54379905-54379924 | None:intergenic | 15.0% |
| !! | ATTACAAAAAAAGAAAACAT+GGG | + | chr8.4:54380105-54380124 | None:intergenic | 15.0% |
| !! | TATTTGTATTTATATTCGAA+AGG | + | chr8.4:54381992-54382011 | None:intergenic | 15.0% |
| !!! | AGTTTTATAAAGTATTACAT+CGG | + | chr8.4:54383493-54383512 | None:intergenic | 15.0% |
| !!! | ATGTTTTGTTTTTTCTAATT+TGG | - | chr8.4:54379905-54379924 | MS.gene066879:intron | 15.0% |
| !!! | TTATTGTTACTTGTTTTTTT+AGG | - | chr8.4:54380056-54380075 | MS.gene066879:intron | 15.0% |
| !!! | TTTATATTCAAATTGACTTA+AGG | + | chr8.4:54383295-54383314 | None:intergenic | 15.0% |
| !!! | TTTTATGTTCATTTTTTAAG+GGG | - | chr8.4:54379955-54379974 | MS.gene066879:intron | 15.0% |
| !! | AACAAACAACATTTATTCAT+AGG | + | chr8.4:54381604-54381623 | None:intergenic | 20.0% |
| !! | AACAAATGATCATCAAAATT+TGG | + | chr8.4:54381279-54381298 | None:intergenic | 20.0% |
| !! | ATGTGAAAAAAAGGATTATT+TGG | - | chr8.4:54381672-54381691 | MS.gene066879:intron | 20.0% |
| !! | CTAAATTTCTTATAAGCTTA+TGG | - | chr8.4:54382493-54382512 | MS.gene066879:CDS | 20.0% |
| !! | GACAATAATTGTATGTATTT+GGG | - | chr8.4:54380655-54380674 | MS.gene066879:CDS | 20.0% |
| !! | GATGTAAGAAGAAAAAAAAA+AGG | - | chr8.4:54383419-54383438 | MS.gene066879:intron | 20.0% |
| !! | TAAAAACTACTCTTATGAAT+AGG | - | chr8.4:54381300-54381319 | MS.gene066879:CDS | 20.0% |
| !! | TGACAATAATTGTATGTATT+TGG | - | chr8.4:54380654-54380673 | MS.gene066879:CDS | 20.0% |
| !! | TGAGCTAATAAAAATTATGT+TGG | + | chr8.4:54383271-54383290 | None:intergenic | 20.0% |
| !! | TGATTGATCTATTTAAAGAT+TGG | + | chr8.4:54382637-54382656 | None:intergenic | 20.0% |
| !!! | AACATTTTGTGCATTTTAAA+TGG | + | chr8.4:54381799-54381818 | None:intergenic | 20.0% |
| !!! | AATTTCAACTGATTCATATA+GGG | + | chr8.4:54383658-54383677 | None:intergenic | 20.0% |
| !!! | TGTGTTTGTTATGTAAATTT+TGG | - | chr8.4:54380130-54380149 | MS.gene066879:intron | 20.0% |
| !!! | TTTAGAATTCACTATTTACA+TGG | - | chr8.4:54380859-54380878 | MS.gene066879:intron | 20.0% |
| !!! | TTTATGTTCATTTTTTAAGG+GGG | - | chr8.4:54379956-54379975 | MS.gene066879:intron | 20.0% |
| ! | AATAGAAAAAAGCTTACACT+TGG | + | chr8.4:54379845-54379864 | None:intergenic | 25.0% |
| ! | AGTGAATTCTAAATGCATAT+AGG | + | chr8.4:54380852-54380871 | None:intergenic | 25.0% |
| ! | AGTGATAGAGATCATAAATT+TGG | - | chr8.4:54382378-54382397 | MS.gene066879:intron | 25.0% |
| ! | AGTTAATGCAGAAATAACAT+AGG | + | chr8.4:54381227-54381246 | None:intergenic | 25.0% |
| ! | ATAAGTTGTTTACCTAAACA+AGG | + | chr8.4:54380257-54380276 | None:intergenic | 25.0% |
| ! | ATAGAAAAAAGCTTACACTT+GGG | + | chr8.4:54379844-54379863 | None:intergenic | 25.0% |
| ! | ATATACAATAGTAAAAGCCA+TGG | + | chr8.4:54383063-54383082 | None:intergenic | 25.0% |
| ! | ATGAGGTTATGAATGATTTA+TGG | - | chr8.4:54380609-54380628 | MS.gene066879:CDS | 25.0% |
| ! | ATTAAGCAAATATTACCTCA+TGG | - | chr8.4:54380010-54380029 | MS.gene066879:intron | 25.0% |
| ! | ATTTGACATGTTGAGTATTA+TGG | - | chr8.4:54380563-54380582 | MS.gene066879:CDS | 25.0% |
| ! | TCACATTAGAAAACCATAAT+GGG | + | chr8.4:54381658-54381677 | None:intergenic | 25.0% |
| ! | TCTATTAGTAGTAAGATCAT+TGG | + | chr8.4:54379806-54379825 | None:intergenic | 25.0% |
| ! | TGAGAGTGGAAATTATAAAA+CGG | + | chr8.4:54382056-54382075 | None:intergenic | 25.0% |
| ! | TTATAACTGATCTTTGTATC+AGG | - | chr8.4:54381053-54381072 | MS.gene066879:intron | 25.0% |
| ! | TTCACATTAGAAAACCATAA+TGG | + | chr8.4:54381659-54381678 | None:intergenic | 25.0% |
| !! | ATTTCAACTGATTCATATAG+GGG | + | chr8.4:54383657-54383676 | None:intergenic | 25.0% |
| !! | CAATTTCAACTGATTCATAT+AGG | + | chr8.4:54383659-54383678 | None:intergenic | 25.0% |
| !! | GGTTTTCTAATGTGAAAAAA+AGG | - | chr8.4:54381663-54381682 | MS.gene066879:intron | 25.0% |
| !! | TGGTATATTACTTTCTTTTC+AGG | - | chr8.4:54380879-54380898 | MS.gene066879:intron | 25.0% |
| !! | TTTGGTATCATTTAAGTTTG+AGG | - | chr8.4:54381690-54381709 | MS.gene066879:intron | 25.0% |
| !!! | TACAACACATATAGTTTTAG+TGG | - | chr8.4:54382936-54382955 | MS.gene066879:intron | 25.0% |
| !!! | TACCATTCTGGAAATTTTTA+GGG | + | chr8.4:54382416-54382435 | None:intergenic | 25.0% |
| !!! | TTACCATTCTGGAAATTTTT+AGG | + | chr8.4:54382417-54382436 | None:intergenic | 25.0% |
| !!! | TTTTGAATGATGATGTTCAT+TGG | - | chr8.4:54383136-54383155 | MS.gene066879:intron | 25.0% |
| AAAAAACCAATCAATGAGAG+TGG | + | chr8.4:54382070-54382089 | None:intergenic | 30.0% | |
| AAAAATGTGTATGTCACAGT+TGG | + | chr8.4:54382669-54382688 | None:intergenic | 30.0% | |
| AAACTACTCTTATGAATAGG+TGG | - | chr8.4:54381303-54381322 | MS.gene066879:CDS | 30.0% | |
| AAAGACATCCAAACAATTGA+GGG | + | chr8.4:54381524-54381543 | None:intergenic | 30.0% | |
| AACAAAAGCCACAATTAGAT+TGG | + | chr8.4:54380509-54380528 | None:intergenic | 30.0% | |
| AACTTTCCTTACTTCATACA+TGG | - | chr8.4:54383182-54383201 | MS.gene066879:intron | 30.0% | |
| AATAAAAAGCAATGTACCGT+CGG | + | chr8.4:54381390-54381409 | None:intergenic | 30.0% | |
| ACACTGGAAATCATAAAATC+AGG | + | chr8.4:54382695-54382714 | None:intergenic | 30.0% | |
| ACTTTATCTGTCCAATTTGA+TGG | + | chr8.4:54381117-54381136 | None:intergenic | 30.0% | |
| ACTTTCCTTACTTCATACAT+GGG | - | chr8.4:54383183-54383202 | MS.gene066879:intron | 30.0% | |
| AGCTGATAGTAAACATAGAT+AGG | + | chr8.4:54381346-54381365 | None:intergenic | 30.0% | |
| AGGTTGTTGAAATTGTTGAT+AGG | - | chr8.4:54381073-54381092 | MS.gene066879:intron | 30.0% | |
| CTATTCCATGACAAATATGA+AGG | + | chr8.4:54383794-54383813 | None:intergenic | 30.0% | |
| CTTCATATTTGTCATGGAAT+AGG | - | chr8.4:54383792-54383811 | MS.gene066879:CDS | 30.0% | |
| GAACAAGTACAAAGAGAAAA+TGG | + | chr8.4:54381205-54381224 | None:intergenic | 30.0% | |
| GAACATGTAAGATGTTAATC+TGG | + | chr8.4:54383579-54383598 | None:intergenic | 30.0% | |
| GAGTAAGTGAAAAAACTTAC+CGG | + | chr8.4:54382474-54382493 | None:intergenic | 30.0% | |
| TAATTTCCACTCTCATTGAT+TGG | - | chr8.4:54382061-54382080 | MS.gene066879:intron | 30.0% | |
| TGAACAAGAAAGAAATCTCA+TGG | - | chr8.4:54382352-54382371 | MS.gene066879:intron | 30.0% | |
| TGAAGTAAGGAAAGTTATTG+AGG | + | chr8.4:54383178-54383197 | None:intergenic | 30.0% | |
| TTAGGCATTTCAGCTTAATT+TGG | - | chr8.4:54380074-54380093 | MS.gene066879:intron | 30.0% | |
| TTCCAGAATGGTAATATTAC+AGG | - | chr8.4:54382423-54382442 | MS.gene066879:intron | 30.0% | |
| TTCCCTAAAAATTTCCAGAA+TGG | - | chr8.4:54382411-54382430 | MS.gene066879:intron | 30.0% | |
| TTGTATTGTCAACTACTAGT+TGG | - | chr8.4:54382970-54382989 | MS.gene066879:intron | 30.0% | |
| TTTGATCTCTGTCATATAGA+AGG | - | chr8.4:54383455-54383474 | MS.gene066879:intron | 30.0% | |
| ! | ATAATGGGAACACATGAAAA+CGG | + | chr8.4:54381643-54381662 | None:intergenic | 30.0% |
| ! | CAAATATTACCTCATGGTTT+TGG | - | chr8.4:54380016-54380035 | MS.gene066879:intron | 30.0% |
| ! | TCTGTATGTCTCTTTGTTAT+AGG | - | chr8.4:54383756-54383775 | MS.gene066879:intron | 30.0% |
| ! | TGAAATTGTTGATAGGTATG+AGG | - | chr8.4:54381080-54381099 | MS.gene066879:intron | 30.0% |
| ! | TTGTATATTTTGTCAAGCCA+AGG | - | chr8.4:54383075-54383094 | MS.gene066879:intron | 30.0% |
| !! | ATAAGACTTTAGCCTTGTTT+AGG | - | chr8.4:54380242-54380261 | MS.gene066879:intron | 30.0% |
| !!! | CTCATTGATTGGTTTTTTAG+TGG | - | chr8.4:54382072-54382091 | MS.gene066879:intron | 30.0% |
| AACAAGTTTCCAAAACCATG+AGG | + | chr8.4:54380028-54380047 | None:intergenic | 35.0% | |
| ACAAACATATTTACCGCTTG+TGG | + | chr8.4:54380798-54380817 | None:intergenic | 35.0% | |
| ACCATCGTATTCATTCCTAT+TGG | - | chr8.4:54380925-54380944 | MS.gene066879:intron | 35.0% | |
| ATAAGTGAAGCAACTCCAAT+AGG | + | chr8.4:54380943-54380962 | None:intergenic | 35.0% | |
| ATTCACTCTTTGCACACAAT+AGG | - | chr8.4:54383226-54383245 | MS.gene066879:intron | 35.0% | |
| CAAACAAGCCAATCTAATTG+TGG | - | chr8.4:54380498-54380517 | MS.gene066879:intron | 35.0% | |
| CAAAGACATCCAAACAATTG+AGG | + | chr8.4:54381525-54381544 | None:intergenic | 35.0% | |
| CACCTGTAATATTACCATTC+TGG | + | chr8.4:54382428-54382447 | None:intergenic | 35.0% | |
| CAGAATGGTAATATTACAGG+TGG | - | chr8.4:54382426-54382445 | MS.gene066879:intron | 35.0% | |
| CCATACAACTTCCTAAAAGT+TGG | + | chr8.4:54382858-54382877 | None:intergenic | 35.0% | |
| CTTATGACGATAAGTGCATA+TGG | + | chr8.4:54380292-54380311 | None:intergenic | 35.0% | |
| GAAAACCCATGTATGAAGTA+AGG | + | chr8.4:54383191-54383210 | None:intergenic | 35.0% | |
| GAAGTTGTATGGAAAGATTG+AGG | - | chr8.4:54382866-54382885 | MS.gene066879:intron | 35.0% | |
| GAGATCCTTCATATTTGTCA+TGG | - | chr8.4:54383786-54383805 | MS.gene066879:CDS | 35.0% | |
| GCTGTCTTCATAAGTTATCT+TGG | - | chr8.4:54380372-54380391 | MS.gene066879:intron | 35.0% | |
| TAATGGGAACACATGAAAAC+GGG | + | chr8.4:54381642-54381661 | None:intergenic | 35.0% | |
| TACAATCACAAGATGAACAG+CGG | + | chr8.4:54382721-54382740 | None:intergenic | 35.0% | |
| TAGCTTACGAACAATGTCAT+AGG | - | chr8.4:54380418-54380437 | MS.gene066879:intron | 35.0% | |
| TAGTTGAAGAATGTGCTATG+AGG | - | chr8.4:54380592-54380611 | MS.gene066879:CDS | 35.0% | |
| TCCAATAGGAATGAATACGA+TGG | + | chr8.4:54380929-54380948 | None:intergenic | 35.0% | |
| TTCACATTTACAATGCACAG+AGG | - | chr8.4:54381444-54381463 | MS.gene066879:intron | 35.0% | |
| ! | AGTAAGCGATTTTCTTACCT+TGG | + | chr8.4:54383095-54383114 | None:intergenic | 35.0% |
| ! | GTTTTCATGTGTTCCCATTA+TGG | - | chr8.4:54381642-54381661 | MS.gene066879:intron | 35.0% |
| !! | CCAACTTTTAGGAAGTTGTA+TGG | - | chr8.4:54382855-54382874 | MS.gene066879:intron | 35.0% |
| !! | GTTGTCGATCTAGCTATTTT+TGG | + | chr8.4:54381751-54381770 | None:intergenic | 35.0% |
| !! | TGTCCTTGTGCAAGTTTTAT+CGG | + | chr8.4:54381160-54381179 | None:intergenic | 35.0% |
| AATGGGAACACATGAAAACG+GGG | + | chr8.4:54381641-54381660 | None:intergenic | 40.0% | |
| ACACCATTTACATCACGTTC+AGG | + | chr8.4:54382249-54382268 | None:intergenic | 40.0% | |
| AGGATCTTATCGTTTGGATG+CGG | - | chr8.4:54382820-54382839 | MS.gene066879:CDS | 40.0% | |
| ATAAGACCACAAGGTACGAT+TGG | + | chr8.4:54382273-54382292 | None:intergenic | 40.0% | |
| ATGGAGTTAGACAATATGCG+TGG | - | chr8.4:54380628-54380647 | MS.gene066879:CDS | 40.0% | |
| ATTGCTTATCTCTCTGTTGG+AGG | - | chr8.4:54383020-54383039 | MS.gene066879:intron | 40.0% | |
| CACCATTTACATCACGTTCA+GGG | + | chr8.4:54382248-54382267 | None:intergenic | 40.0% | |
| CCCTCAATTGCTCATCATTT+CGG | + | chr8.4:54382191-54382210 | None:intergenic | 40.0% | |
| CCGAAATGATGAGCAATTGA+GGG | - | chr8.4:54382188-54382207 | MS.gene066879:intron | 40.0% | |
| GAAAGGTGATGAGATAAACG+TGG | - | chr8.4:54382899-54382918 | MS.gene066879:intron | 40.0% | |
| GAGCAAACAATCAAAGACAG+TGG | + | chr8.4:54382034-54382053 | None:intergenic | 40.0% | |
| GGAAAAGCAAACTCAACAAG+TGG | - | chr8.4:54382216-54382235 | MS.gene066879:intron | 40.0% | |
| GTGGAAAGAATGACTTCCTT+GGG | - | chr8.4:54382997-54383016 | MS.gene066879:intron | 40.0% | |
| GTTGTATGGAAAGATTGAGG+TGG | - | chr8.4:54382869-54382888 | MS.gene066879:intron | 40.0% | |
| TATGAAACAGTTGAGTGAGC+AGG | - | chr8.4:54382797-54382816 | MS.gene066879:intron | 40.0% | |
| TTACAATGCACAGAGGAAAG+TGG | - | chr8.4:54381451-54381470 | MS.gene066879:intron | 40.0% | |
| TTGTCAACTACTAGTTGGCT+TGG | - | chr8.4:54382975-54382994 | MS.gene066879:intron | 40.0% | |
| ! | GAAAGTGGTTTGAAGCAACA+AGG | - | chr8.4:54381466-54381485 | MS.gene066879:intron | 40.0% |
| ! | TCATCTCAACGAGAGTATAC+CGG | - | chr8.4:54382452-54382471 | MS.gene066879:CDS | 40.0% |
| ! | TGGAGGATTGAGCTTCTTTT+TGG | - | chr8.4:54383037-54383056 | MS.gene066879:intron | 40.0% |
| !! | ATTGAGCTTCTTTTTGGCCA+TGG | - | chr8.4:54383043-54383062 | MS.gene066879:intron | 40.0% |
| !! | TACCTTGTGGTCTTATAGCT+TGG | - | chr8.4:54382277-54382296 | MS.gene066879:intron | 40.0% |
| AAGATCATTGGATCCAACGC+TGG | + | chr8.4:54379794-54379813 | None:intergenic | 45.0% | |
| ACCGCTTGTGGTGTAAGAAT+AGG | + | chr8.4:54380786-54380805 | None:intergenic | 45.0% | |
| ACTTCTACCAGAATCACCGA+CGG | - | chr8.4:54381371-54381390 | MS.gene066879:CDS | 45.0% | |
| AGATGAACAGCGGAATACAC+TGG | + | chr8.4:54382711-54382730 | None:intergenic | 45.0% | |
| AGCAGGAGGATCTTATCGTT+TGG | - | chr8.4:54382814-54382833 | MS.gene066879:CDS | 45.0% | |
| ATTGAGGTGGATCTGGAGAA+AGG | - | chr8.4:54382882-54382901 | MS.gene066879:intron | 45.0% | |
| CAGAGAGATAAGCAATCCCA+AGG | + | chr8.4:54383016-54383035 | None:intergenic | 45.0% | |
| CAGCATGCGTACCATCAAAT+TGG | - | chr8.4:54381103-54381122 | MS.gene066879:intron | 45.0% | |
| CTCCAAGCTATAAGACCACA+AGG | + | chr8.4:54382282-54382301 | None:intergenic | 45.0% | |
| CTGCCGATAAAACTTGCACA+AGG | - | chr8.4:54381154-54381173 | MS.gene066879:CDS | 45.0% | |
| GACATCCAAACAATTGAGGG+AGG | + | chr8.4:54381521-54381540 | None:intergenic | 45.0% | |
| GACCCTGAACGTGATGTAAA+TGG | - | chr8.4:54382243-54382262 | MS.gene066879:CDS | 45.0% | |
| GCCGAAATGATGAGCAATTG+AGG | - | chr8.4:54382187-54382206 | MS.gene066879:intron | 45.0% | |
| GCCTATTCTTACACCACAAG+CGG | - | chr8.4:54380782-54380801 | MS.gene066879:CDS | 45.0% | |
| GGGATTGCTTATCTCTCTGT+TGG | - | chr8.4:54383017-54383036 | MS.gene066879:intron | 45.0% | |
| GGTGGAAAGAATGACTTCCT+TGG | - | chr8.4:54382996-54383015 | MS.gene066879:intron | 45.0% | |
| GTAAGAATAGGCTTGCATGC+TGG | + | chr8.4:54380774-54380793 | None:intergenic | 45.0% | |
| TCATGGAATAGGAACCCATC+AGG | - | chr8.4:54383803-54383822 | MS.gene066879:CDS | 45.0% | |
| TGGAAAGATTGAGGTGGATC+TGG | - | chr8.4:54382875-54382894 | MS.gene066879:intron | 45.0% | |
| !! | TCAACTACTAGTTGGCTTGG+TGG | - | chr8.4:54382978-54382997 | MS.gene066879:intron | 45.0% |
| CAATGTACCGTCGGTGATTC+TGG | + | chr8.4:54381381-54381400 | None:intergenic | 50.0% | |
| GAAACAGTTGAGTGAGCAGG+AGG | - | chr8.4:54382800-54382819 | MS.gene066879:intron | 50.0% | |
| GATGAGCAATTGAGGGATGC+TGG | - | chr8.4:54382195-54382214 | MS.gene066879:intron | 50.0% | |
| GCACAAGGACACTGCATGTA+TGG | - | chr8.4:54381169-54381188 | MS.gene066879:CDS | 50.0% | |
| GCGTACCTCCCTCAATTGTT+TGG | - | chr8.4:54381513-54381532 | MS.gene066879:intron | 50.0% | |
| ! | CTGCGGCTTTGCCAACTTTT+AGG | - | chr8.4:54382844-54382863 | MS.gene066879:CDS | 50.0% |
| ! | TATCGTTTGGATGCGGACTG+CGG | - | chr8.4:54382827-54382846 | MS.gene066879:CDS | 50.0% |
| GGTGTGCCAATCGTACCTTG+TGG | - | chr8.4:54382264-54382283 | MS.gene066879:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 54379781 | 54383832 | 54379781 | ID=MS.gene066879 |
| chr8.4 | mRNA | 54379781 | 54383832 | 54379781 | ID=MS.gene066879.t1;Parent=MS.gene066879 |
| chr8.4 | exon | 54383766 | 54383832 | 54383766 | ID=MS.gene066879.t1.exon1;Parent=MS.gene066879.t1 |
| chr8.4 | CDS | 54383766 | 54383832 | 54383766 | ID=cds.MS.gene066879.t1;Parent=MS.gene066879.t1 |
| chr8.4 | exon | 54382810 | 54382868 | 54382810 | ID=MS.gene066879.t1.exon2;Parent=MS.gene066879.t1 |
| chr8.4 | CDS | 54382810 | 54382868 | 54382810 | ID=cds.MS.gene066879.t1;Parent=MS.gene066879.t1 |
| chr8.4 | exon | 54382638 | 54382712 | 54382638 | ID=MS.gene066879.t1.exon3;Parent=MS.gene066879.t1 |
| chr8.4 | CDS | 54382638 | 54382712 | 54382638 | ID=cds.MS.gene066879.t1;Parent=MS.gene066879.t1 |
| chr8.4 | exon | 54382428 | 54382538 | 54382428 | ID=MS.gene066879.t1.exon4;Parent=MS.gene066879.t1 |
| chr8.4 | CDS | 54382428 | 54382538 | 54382428 | ID=cds.MS.gene066879.t1;Parent=MS.gene066879.t1 |
| chr8.4 | exon | 54382221 | 54382291 | 54382221 | ID=MS.gene066879.t1.exon5;Parent=MS.gene066879.t1 |
| chr8.4 | CDS | 54382221 | 54382291 | 54382221 | ID=cds.MS.gene066879.t1;Parent=MS.gene066879.t1 |
| chr8.4 | exon | 54381140 | 54381437 | 54381140 | ID=MS.gene066879.t1.exon6;Parent=MS.gene066879.t1 |
| chr8.4 | CDS | 54381140 | 54381437 | 54381140 | ID=cds.MS.gene066879.t1;Parent=MS.gene066879.t1 |
| chr8.4 | exon | 54380517 | 54380806 | 54380517 | ID=MS.gene066879.t1.exon7;Parent=MS.gene066879.t1 |
| chr8.4 | CDS | 54380517 | 54380806 | 54380517 | ID=cds.MS.gene066879.t1;Parent=MS.gene066879.t1 |
| chr8.4 | exon | 54379781 | 54379835 | 54379781 | ID=MS.gene066879.t1.exon8;Parent=MS.gene066879.t1 |
| chr8.4 | CDS | 54379781 | 54379835 | 54379781 | ID=cds.MS.gene066879.t1;Parent=MS.gene066879.t1 |
| Gene Sequence |
| Protein sequence |
