Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034104.t1 | XP_003604349.1 | 99 | 290 | 3 | 0 | 1 | 290 | 1 | 290 | 9.80E-162 | 579.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034104.t1 | Q9LVC8 | 73.8 | 290 | 74 | 2 | 1 | 290 | 1 | 288 | 6.1e-120 | 431.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034104.t1 | B7FL93 | 99.0 | 290 | 3 | 0 | 1 | 290 | 1 | 290 | 7.1e-162 | 579.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034104 | MS.gene80725 | PPI |
| MS.gene034104 | MS.gene44339 | PPI |
| MS.gene034104 | MS.gene027672 | PPI |
| MS.gene034104 | MS.gene53448 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034104.t1 | MTR_4g009880 | 98.966 | 290 | 3 | 0 | 1 | 290 | 1 | 290 | 0.0 | 593 |
| MS.gene034104.t1 | MTR_5g033700 | 28.205 | 234 | 149 | 4 | 49 | 282 | 41 | 255 | 3.31e-22 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034104.t1 | AT5G57300 | 73.448 | 290 | 75 | 2 | 1 | 290 | 1 | 288 | 3.17e-158 | 442 |
| MS.gene034104.t1 | AT5G57300 | 73.448 | 290 | 75 | 2 | 1 | 290 | 1 | 288 | 3.17e-158 | 442 |
| MS.gene034104.t1 | AT5G57300 | 73.448 | 290 | 75 | 2 | 1 | 290 | 1 | 288 | 3.17e-158 | 442 |
| MS.gene034104.t1 | AT5G57300 | 73.448 | 290 | 75 | 2 | 1 | 290 | 1 | 288 | 3.17e-158 | 442 |
| MS.gene034104.t1 | AT1G23360 | 29.119 | 261 | 154 | 7 | 31 | 280 | 12 | 252 | 2.98e-22 | 93.6 |
Find 77 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAATCAAATTCATGGCTT+TGG | 0.225191 | 4.4:+89286362 | None:intergenic |
| GGAGTGGTTGCCATTCATTC+AGG | 0.229705 | 4.4:+89289562 | MS.gene034104:CDS |
| GATTCTCATACTCTACTTTC+TGG | 0.257502 | 4.4:-89289531 | None:intergenic |
| CAGCATTATGTTCCACTTCC+AGG | 0.259306 | 4.4:+89286421 | MS.gene034104:CDS |
| GATGGTTACACTATTGCATT+TGG | 0.299423 | 4.4:+89287841 | MS.gene034104:CDS |
| GAGAAGATGGTTCCCTTGTT+TGG | 0.306971 | 4.4:+89287773 | MS.gene034104:CDS |
| AAACAGCGGGCTGCCGAAAA+AGG | 0.316482 | 4.4:+89287634 | MS.gene034104:CDS |
| TTGCCAACATTCAACATGTT+TGG | 0.317102 | 4.4:-89287613 | None:intergenic |
| ACAATCAAATTCATGGCTTT+GGG | 0.326107 | 4.4:+89286363 | None:intergenic |
| TGCCAACATTCAACATGTTT+GGG | 0.340988 | 4.4:-89287612 | None:intergenic |
| ACTCACAGTTCTTTAAATAT+AGG | 0.345907 | 4.4:-89288077 | None:intergenic |
| AAGTTTATTCCCCAACCTTT+TGG | 0.347857 | 4.4:-89286394 | None:intergenic |
| CTTGATGTGGCTGGTGGCAC+AGG | 0.349838 | 4.4:+89286973 | MS.gene034104:CDS |
| CATTCTCACGCCACCAGTTT+CGG | 0.362182 | 4.4:+89286450 | MS.gene034104:CDS |
| TGAATGTAACTAACCGAAAC+TGG | 0.369852 | 4.4:-89286463 | None:intergenic |
| ACACTATTGCATTTGGGATA+AGG | 0.370614 | 4.4:+89287848 | MS.gene034104:CDS |
| AGAAGATGGTTCCCTTGTTT+GGG | 0.370951 | 4.4:+89287774 | MS.gene034104:CDS |
| GGAATAGTCACCAAAAGGTT+GGG | 0.387755 | 4.4:+89286384 | MS.gene034104:CDS |
| CGCATAGGAGAGATGGTTGC+TGG | 0.406834 | 4.4:+89288606 | MS.gene034104:CDS |
| GTAGAGTATGAGAATCTAGT+TGG | 0.412758 | 4.4:+89289538 | MS.gene034104:CDS |
| AGATGCTTCATTCCAGGAAA+AGG | 0.430797 | 4.4:-89286952 | None:intergenic |
| AGCACTCATTAAATCATTCA+TGG | 0.432256 | 4.4:-89286653 | None:intergenic |
| TTGATAGGTTATGGAGAAGA+TGG | 0.439292 | 4.4:+89287760 | MS.gene034104:intron |
| TAGAGTATGAGAATCTAGTT+GGG | 0.440717 | 4.4:+89289539 | MS.gene034104:CDS |
| AAGTTCTTAGTGAAGCTCAT+AGG | 0.441760 | 4.4:+89287890 | MS.gene034104:CDS |
| AACCATCCATTGAATCATCT+TGG | 0.445596 | 4.4:-89287825 | None:intergenic |
| ACATCAAGATGCTTCATTCC+AGG | 0.450303 | 4.4:-89286958 | None:intergenic |
| ATGAATGATTTAATGAGTGC+TGG | 0.460373 | 4.4:+89286655 | MS.gene034104:CDS |
| GGTTCCCTTGTTTGGGTGGA+GGG | 0.465219 | 4.4:+89287781 | MS.gene034104:CDS |
| AGTACTTAGTTGAGAGTATC+CGG | 0.465510 | 4.4:+89288646 | MS.gene034104:CDS |
| GACTAACATGGCTTAGTTCA+AGG | 0.468673 | 4.4:-89288052 | None:intergenic |
| ATGGTTACACTATTGCATTT+GGG | 0.470063 | 4.4:+89287842 | MS.gene034104:CDS |
| ACTCTCAACTAAGTACTGAT+AGG | 0.475235 | 4.4:-89288640 | None:intergenic |
| TGCATAGACTGTGGAAAGAA+AGG | 0.477937 | 4.4:+89286680 | MS.gene034104:CDS |
| GCATCAATGATTGCTGATGC+AGG | 0.479407 | 4.4:+89289505 | MS.gene034104:CDS |
| AGATGGTTCCCTTGTTTGGG+TGG | 0.486517 | 4.4:+89287777 | MS.gene034104:CDS |
| GAGTTTCCAAGATGATTCAA+TGG | 0.492872 | 4.4:+89287819 | MS.gene034104:CDS |
| GGGAATAGTCACCAAAAGGT+TGG | 0.494727 | 4.4:+89286383 | MS.gene034104:CDS |
| ACATGTAAACGAAGAAGAAA+AGG | 0.495399 | 4.4:+89286582 | MS.gene034104:CDS |
| TTCCAAGATGATTCAATGGA+TGG | 0.499743 | 4.4:+89287823 | MS.gene034104:CDS |
| TGGTTCCCTTGTTTGGGTGG+AGG | 0.501182 | 4.4:+89287780 | MS.gene034104:CDS |
| GAGTGGTTGCCATTCATTCA+GGG | 0.501280 | 4.4:+89289563 | MS.gene034104:CDS |
| AACCCAAACATGTTGAATGT+TGG | 0.507027 | 4.4:+89287610 | MS.gene034104:CDS |
| CTTTGGGAATAGTCACCAAA+AGG | 0.511333 | 4.4:+89286379 | MS.gene034104:CDS |
| GAAGAAAAGGCACGCATGGT+TGG | 0.513960 | 4.4:+89286595 | MS.gene034104:CDS |
| GGCGTGAGAATGTAGAAGCC+TGG | 0.539666 | 4.4:-89286439 | None:intergenic |
| AGAATGTAGAAGCCTGGAAG+TGG | 0.541500 | 4.4:-89286433 | None:intergenic |
| CATTTCCCTCCACCCAAACA+AGG | 0.541525 | 4.4:-89287786 | None:intergenic |
| CGAAGAAGAAAAGGCACGCA+TGG | 0.547778 | 4.4:+89286591 | MS.gene034104:CDS |
| GGGTATTGAAACATGGCGGC+AGG | 0.551535 | 4.4:+89288021 | MS.gene034104:intron |
| TTCTCAGTTATTCCACGCAT+AGG | 0.551549 | 4.4:+89288591 | MS.gene034104:CDS |
| CATCAATGATTGCTGATGCA+GGG | 0.553506 | 4.4:+89289506 | MS.gene034104:CDS |
| TAAACAGAGTTAAGCAGAGA+GGG | 0.553594 | 4.4:+89287527 | MS.gene034104:CDS |
| ATGAAGCATCTTGATGTGGC+TGG | 0.567195 | 4.4:+89286964 | MS.gene034104:CDS |
| CTGGAAGTGGAACATAATGC+TGG | 0.574988 | 4.4:-89286420 | None:intergenic |
| AGAGTATGAGAATCTAGTTG+GGG | 0.577545 | 4.4:+89289540 | MS.gene034104:CDS |
| TATTCCACGCATAGGAGAGA+TGG | 0.581177 | 4.4:+89288599 | MS.gene034104:CDS |
| CATGGCTTAGTTCAAGGCAT+AGG | 0.588289 | 4.4:-89288046 | None:intergenic |
| GAATAGTCACCAAAAGGTTG+GGG | 0.588614 | 4.4:+89286385 | MS.gene034104:CDS |
| AAGCAGAGAGGGCTTCAAGA+CGG | 0.589957 | 4.4:+89287538 | MS.gene034104:CDS |
| GTTGAATGTTGGCAAACAGC+GGG | 0.591584 | 4.4:+89287621 | MS.gene034104:CDS |
| TTTAACAGGGTATTGAAACA+TGG | 0.607121 | 4.4:+89288014 | MS.gene034104:intron |
| TGAATGATTTAATGAGTGCT+GGG | 0.607327 | 4.4:+89286656 | MS.gene034104:CDS |
| TAAATATAGGAAGACTAACA+TGG | 0.618541 | 4.4:-89288064 | None:intergenic |
| TGGAATGAAGCATCTTGATG+TGG | 0.622526 | 4.4:+89286960 | MS.gene034104:CDS |
| GCAACCATCTCTCCTATGCG+TGG | 0.623759 | 4.4:-89288603 | None:intergenic |
| ATAAACAGAGTTAAGCAGAG+AGG | 0.627426 | 4.4:+89287526 | MS.gene034104:CDS |
| AAGGAATTGATAACCTGTGG+GGG | 0.636836 | 4.4:-89288675 | None:intergenic |
| GAGTATGAGAATCTAGTTGG+GGG | 0.647356 | 4.4:+89289541 | MS.gene034104:CDS |
| TCCAGGAAAAGGATTCAACA+TGG | 0.651935 | 4.4:-89286941 | None:intergenic |
| TGTTGAATGTTGGCAAACAG+CGG | 0.653881 | 4.4:+89287620 | MS.gene034104:CDS |
| GAAGGAATTGATAACCTGTG+GGG | 0.670066 | 4.4:-89288676 | None:intergenic |
| ATTTCCCTCCACCCAAACAA+GGG | 0.670211 | 4.4:-89287785 | None:intergenic |
| AAGCATCTTGATGTGGCTGG+TGG | 0.685724 | 4.4:+89286967 | MS.gene034104:CDS |
| AACAGGGTATTGAAACATGG+CGG | 0.708414 | 4.4:+89288017 | MS.gene034104:intron |
| ATGTAACTAACCGAAACTGG+TGG | 0.730211 | 4.4:-89286460 | None:intergenic |
| GTGCTGGGTTGCATAGACTG+TGG | 0.765413 | 4.4:+89286671 | MS.gene034104:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTTTTT+AGG | - | chr4.4:89289272-89289291 | None:intergenic | 0.0% |
| !! | AATTAAATAATGAATAACAT+AGG | - | chr4.4:89288902-89288921 | None:intergenic | 10.0% |
| !! | GTAATAATTTAAAAAAGAAA+TGG | - | chr4.4:89286830-89286849 | None:intergenic | 10.0% |
| !! | AATTATTTATAGAATGGAAT+AGG | - | chr4.4:89286714-89286733 | None:intergenic | 15.0% |
| !! | TACAAGGTATATAAATTAAA+GGG | - | chr4.4:89288229-89288248 | None:intergenic | 15.0% |
| !! | TATAATCATTAATAAGCATA+AGG | + | chr4.4:89287454-89287473 | MS.gene034104:intron | 15.0% |
| !! | TTAATTTATCTTCATTTGTT+AGG | + | chr4.4:89287715-89287734 | MS.gene034104:intron | 15.0% |
| !! | TTACAAGGTATATAAATTAA+AGG | - | chr4.4:89288230-89288249 | None:intergenic | 15.0% |
| !!! | ACATTTTTCCATAAAAAATT+AGG | + | chr4.4:89286553-89286572 | MS.gene034104:intron | 15.0% |
| !!! | ATTTGGTTTAACTAAAAAAA+TGG | - | chr4.4:89286494-89286513 | None:intergenic | 15.0% |
| !!! | ATTTTTTATTGATTTTACAG+GGG | + | chr4.4:89287477-89287496 | MS.gene034104:intron | 15.0% |
| !!! | GATTTTTTATTGATTTTACA+GGG | + | chr4.4:89287476-89287495 | MS.gene034104:intron | 15.0% |
| !!! | TTTTTTTCATTTCTTTAACA+GGG | + | chr4.4:89288001-89288020 | MS.gene034104:intron | 15.0% |
| !! | AAACATAATCGAAGTTTATA+TGG | + | chr4.4:89288253-89288272 | MS.gene034104:intron | 20.0% |
| !! | AGTTATATTCTATTCAAGTA+TGG | - | chr4.4:89288528-89288547 | None:intergenic | 20.0% |
| !! | TGACTAATGTATTATATTGA+TGG | + | chr4.4:89289466-89289485 | MS.gene034104:intron | 20.0% |
| !!! | GGATTTTTTATTGATTTTAC+AGG | + | chr4.4:89287475-89287494 | MS.gene034104:intron | 20.0% |
| !!! | GTTTGAAACCTAATTTTTTA+TGG | - | chr4.4:89286564-89286583 | None:intergenic | 20.0% |
| !!! | GTTTTTATGCTTATTTTGAT+AGG | + | chr4.4:89287745-89287764 | MS.gene034104:intron | 20.0% |
| !!! | GTTTTTTTCATTTCTTTAAC+AGG | + | chr4.4:89288000-89288019 | MS.gene034104:intron | 20.0% |
| !!! | TCGATTATGTTTTATTTACA+AGG | - | chr4.4:89288245-89288264 | None:intergenic | 20.0% |
| ! | AACCAAATAATATTAACCTG+TGG | + | chr4.4:89286506-89286525 | MS.gene034104:intron | 25.0% |
| ! | ACATTAGTCAATACAGAAAA+GGG | - | chr4.4:89289456-89289475 | None:intergenic | 25.0% |
| ! | ACCTTATATAAACAGAAACT+TGG | - | chr4.4:89287096-89287115 | None:intergenic | 25.0% |
| ! | ACTAAAGCATATAAAGATGT+TGG | - | chr4.4:89288825-89288844 | None:intergenic | 25.0% |
| ! | ACTCACAGTTCTTTAAATAT+AGG | - | chr4.4:89288080-89288099 | None:intergenic | 25.0% |
| ! | ATAATGAATAACATAGGAGA+TGG | - | chr4.4:89288896-89288915 | None:intergenic | 25.0% |
| ! | TAAATATAGGAAGACTAACA+TGG | - | chr4.4:89288067-89288086 | None:intergenic | 25.0% |
| ! | TACATTAGTCAATACAGAAA+AGG | - | chr4.4:89289457-89289476 | None:intergenic | 25.0% |
| ! | TCTCCATATTAATGCAATAT+TGG | - | chr4.4:89287396-89287415 | None:intergenic | 25.0% |
| ! | TTGAAAAATATGTAGTGTGT+GGG | + | chr4.4:89287152-89287171 | MS.gene034104:intron | 25.0% |
| ! | TTTGAAAATTGAGGAATTCT+CGG | + | chr4.4:89288448-89288467 | MS.gene034104:intron | 25.0% |
| !! | ACATTCTCATTTACCTTTTT+CGG | - | chr4.4:89287650-89287669 | None:intergenic | 25.0% |
| !! | AGATCAGATATACTCATTTT+GGG | + | chr4.4:89289058-89289077 | MS.gene034104:intron | 25.0% |
| !! | GGATATATCTTTGAAAATTG+AGG | + | chr4.4:89288439-89288458 | MS.gene034104:intron | 25.0% |
| !! | TACGTTCATACTTCAAATTT+TGG | + | chr4.4:89288296-89288315 | MS.gene034104:intron | 25.0% |
| !! | TTTTGGACAAAAGAATTAAG+AGG | + | chr4.4:89288313-89288332 | MS.gene034104:intron | 25.0% |
| !!! | ACTGTGTAGTTTTTTTATGT+TGG | + | chr4.4:89289341-89289360 | MS.gene034104:intron | 25.0% |
| !!! | ATGCTTATTTTGATAGGTTA+TGG | + | chr4.4:89287751-89287770 | MS.gene034104:intron | 25.0% |
| !!! | CATTTTAGCTTGAAAGAAAA+GGG | + | chr4.4:89288726-89288745 | MS.gene034104:intron | 25.0% |
| !!! | TCATTTTAGCTTGAAAGAAA+AGG | + | chr4.4:89288725-89288744 | MS.gene034104:intron | 25.0% |
| AAACAACAGATAATGTGTCT+CGG | + | chr4.4:89288337-89288356 | MS.gene034104:intron | 30.0% | |
| AACGTATCAAGATAGTATGA+AGG | - | chr4.4:89287006-89287025 | None:intergenic | 30.0% | |
| AATCCTATACAGAACTAACA+CGG | - | chr4.4:89286878-89286897 | None:intergenic | 30.0% | |
| ACATGTAAACGAAGAAGAAA+AGG | + | chr4.4:89286582-89286601 | MS.gene034104:CDS | 30.0% | |
| AGCACTCATTAAATCATTCA+TGG | - | chr4.4:89286656-89286675 | None:intergenic | 30.0% | |
| ATGAATGATTTAATGAGTGC+TGG | + | chr4.4:89286655-89286674 | MS.gene034104:CDS | 30.0% | |
| ATGCTGTAAAATTCTTACCA+TGG | + | chr4.4:89287233-89287252 | MS.gene034104:intron | 30.0% | |
| ATGGTTACACTATTGCATTT+GGG | + | chr4.4:89287842-89287861 | MS.gene034104:CDS | 30.0% | |
| ATTAATATGGAGAGACTTGA+AGG | + | chr4.4:89287403-89287422 | MS.gene034104:intron | 30.0% | |
| CGACATTAATGCGTAAAAAT+CGG | - | chr4.4:89286852-89286871 | None:intergenic | 30.0% | |
| CTCCACAGGTTAATATTATT+TGG | - | chr4.4:89286511-89286530 | None:intergenic | 30.0% | |
| CTTGAAAAATATGTAGTGTG+TGG | + | chr4.4:89287151-89287170 | MS.gene034104:intron | 30.0% | |
| GAACATGTAAAAACTAGTCA+CGG | + | chr4.4:89289122-89289141 | MS.gene034104:intron | 30.0% | |
| GCCAAGTTTCTGTTTATATA+AGG | + | chr4.4:89287092-89287111 | MS.gene034104:intron | 30.0% | |
| GTAAAAGAAGTGATGAAGTA+TGG | + | chr4.4:89287174-89287193 | MS.gene034104:intron | 30.0% | |
| TAAGTACAGCTATCAATAGA+AGG | - | chr4.4:89288697-89288716 | None:intergenic | 30.0% | |
| TAATTGAAACCCAAGAAAAG+AGG | + | chr4.4:89288917-89288936 | MS.gene034104:intron | 30.0% | |
| TAATTTCTGCTCAATTTCTC+AGG | + | chr4.4:89286911-89286930 | MS.gene034104:intron | 30.0% | |
| TAGAGTATGAGAATCTAGTT+GGG | + | chr4.4:89289539-89289558 | MS.gene034104:CDS | 30.0% | |
| TCGCCAATATTGCATTAATA+TGG | + | chr4.4:89287390-89287409 | MS.gene034104:intron | 30.0% | |
| TGAATGATTTAATGAGTGCT+GGG | + | chr4.4:89286656-89286675 | MS.gene034104:CDS | 30.0% | |
| TGCTGTAAAATTCTTACCAT+GGG | + | chr4.4:89287234-89287253 | MS.gene034104:intron | 30.0% | |
| TGTAATTGACACGATAAAGT+GGG | - | chr4.4:89289084-89289103 | None:intergenic | 30.0% | |
| TGTTACAGATAATGTGAGAT+TGG | + | chr4.4:89287064-89287083 | MS.gene034104:intron | 30.0% | |
| TTAATATGGAGAGACTTGAA+GGG | + | chr4.4:89287404-89287423 | MS.gene034104:intron | 30.0% | |
| TTCTATTCAAGTATGGAAGA+AGG | - | chr4.4:89288521-89288540 | None:intergenic | 30.0% | |
| TTCTCAAGAATGATGTGAAT+TGG | + | chr4.4:89288115-89288134 | MS.gene034104:intron | 30.0% | |
| TTGAAGTATGAACGTAAACA+AGG | - | chr4.4:89288292-89288311 | None:intergenic | 30.0% | |
| TTGTAATTGACACGATAAAG+TGG | - | chr4.4:89289085-89289104 | None:intergenic | 30.0% | |
| ! | ATACAAAAGCCTCTTTTCTT+GGG | - | chr4.4:89288929-89288948 | None:intergenic | 30.0% |
| ! | GAGATCAGATATACTCATTT+TGG | + | chr4.4:89289057-89289076 | MS.gene034104:intron | 30.0% |
| ! | GATTTTTATCCCTGAATGAA+TGG | - | chr4.4:89289575-89289594 | None:intergenic | 30.0% |
| ! | TATACAAAAGCCTCTTTTCT+TGG | - | chr4.4:89288930-89288949 | None:intergenic | 30.0% |
| !! | GTATTATATTGATGGATTGC+AGG | + | chr4.4:89289474-89289493 | MS.gene034104:intron | 30.0% |
| !! | TTTAACAGGGTATTGAAACA+TGG | + | chr4.4:89288014-89288033 | MS.gene034104:intron | 30.0% |
| AACAACAGATAATGTGTCTC+GGG | + | chr4.4:89288338-89288357 | MS.gene034104:intron | 35.0% | |
| AACCATCCATTGAATCATCT+TGG | - | chr4.4:89287828-89287847 | None:intergenic | 35.0% | |
| AACCCAAACATGTTGAATGT+TGG | + | chr4.4:89287610-89287629 | MS.gene034104:CDS | 35.0% | |
| AAGTTCTTAGTGAAGCTCAT+AGG | + | chr4.4:89287890-89287909 | MS.gene034104:CDS | 35.0% | |
| AGAGTATGAGAATCTAGTTG+GGG | + | chr4.4:89289540-89289559 | MS.gene034104:CDS | 35.0% | |
| ATAAACAGAGTTAAGCAGAG+AGG | + | chr4.4:89287526-89287545 | MS.gene034104:CDS | 35.0% | |
| ATACAGCTATACCCTATGAA+AGG | - | chr4.4:89287341-89287360 | None:intergenic | 35.0% | |
| CATCTTGTAGAAGGATCTAT+AGG | - | chr4.4:89288779-89288798 | None:intergenic | 35.0% | |
| GAGTTTCCAAGATGATTCAA+TGG | + | chr4.4:89287819-89287838 | MS.gene034104:CDS | 35.0% | |
| GATGGTCATTATCAACCAAT+TGG | - | chr4.4:89288878-89288897 | None:intergenic | 35.0% | |
| GATGGTTACACTATTGCATT+TGG | + | chr4.4:89287841-89287860 | MS.gene034104:CDS | 35.0% | |
| GATTCTCATACTCTACTTTC+TGG | - | chr4.4:89289534-89289553 | None:intergenic | 35.0% | |
| GCTGTAAAATTCTTACCATG+GGG | + | chr4.4:89287235-89287254 | MS.gene034104:intron | 35.0% | |
| GTAGAGTATGAGAATCTAGT+TGG | + | chr4.4:89289538-89289557 | MS.gene034104:CDS | 35.0% | |
| TAAACAGAGTTAAGCAGAGA+GGG | + | chr4.4:89287527-89287546 | MS.gene034104:CDS | 35.0% | |
| TACAGCTATACCCTATGAAA+GGG | - | chr4.4:89287340-89287359 | None:intergenic | 35.0% | |
| TCAGAGGGATATAGTTCAAA+AGG | + | chr4.4:89287202-89287221 | MS.gene034104:intron | 35.0% | |
| TGAATGTAACTAACCGAAAC+TGG | - | chr4.4:89286466-89286485 | None:intergenic | 35.0% | |
| TGCCAACATTCAACATGTTT+GGG | - | chr4.4:89287615-89287634 | None:intergenic | 35.0% | |
| TTCCAAGATGATTCAATGGA+TGG | + | chr4.4:89287823-89287842 | MS.gene034104:CDS | 35.0% | |
| TTGATAGGTTATGGAGAAGA+TGG | + | chr4.4:89287760-89287779 | MS.gene034104:intron | 35.0% | |
| TTGCCAACATTCAACATGTT+TGG | - | chr4.4:89287616-89287635 | None:intergenic | 35.0% | |
| TTGGCAATGTCGATATTGTT+AGG | + | chr4.4:89289164-89289183 | MS.gene034104:intron | 35.0% | |
| ! | AAGTTTATTCCCCAACCTTT+TGG | - | chr4.4:89286397-89286416 | None:intergenic | 35.0% |
| ! | ACACTATTGCATTTGGGATA+AGG | + | chr4.4:89287848-89287867 | MS.gene034104:CDS | 35.0% |
| ! | AGAAGGAATTGATAACCTGT+GGG | - | chr4.4:89288680-89288699 | None:intergenic | 35.0% |
| ! | GAATGATGTGAATTGGTGTT+TGG | + | chr4.4:89288122-89288141 | MS.gene034104:intron | 35.0% |
| ! | TAGAAGGAATTGATAACCTG+TGG | - | chr4.4:89288681-89288700 | None:intergenic | 35.0% |
| !! | ACTCTCAACTAAGTACTGAT+AGG | - | chr4.4:89288643-89288662 | None:intergenic | 35.0% |
| !! | AGTACTTAGTTGAGAGTATC+CGG | + | chr4.4:89288646-89288665 | MS.gene034104:CDS | 35.0% |
| !! | TTGCTTATCGCTTGTTTCTA+AGG | - | chr4.4:89288395-89288414 | None:intergenic | 35.0% |
| !!! | GGATGTTGCTTTTAGAATCT+TGG | + | chr4.4:89287498-89287517 | MS.gene034104:CDS | 35.0% |
| AAATGTCAAGAAAGCCGTGA+CGG | + | chr4.4:89289426-89289445 | MS.gene034104:intron | 40.0% | |
| AAGGATCTATAGGTCTGTTC+AGG | - | chr4.4:89288769-89288788 | None:intergenic | 40.0% | |
| AAGTGGTTCCAACCTTTCAT+TGG | - | chr4.4:89287265-89287284 | None:intergenic | 40.0% | |
| ACAACAGATAATGTGTCTCG+GGG | + | chr4.4:89288339-89288358 | MS.gene034104:intron | 40.0% | |
| ACAGTTATGTGAGTTTCAGG+TGG | + | chr4.4:89289223-89289242 | MS.gene034104:intron | 40.0% | |
| ACATCAAGATGCTTCATTCC+AGG | - | chr4.4:89286961-89286980 | None:intergenic | 40.0% | |
| ACGTGGTTCACGAGTTAATT+TGG | - | chr4.4:89288478-89288497 | None:intergenic | 40.0% | |
| AGAAGTGATGAAGTATGGAC+TGG | + | chr4.4:89287179-89287198 | MS.gene034104:intron | 40.0% | |
| AGATCCTTCTACAAGATGTC+CGG | + | chr4.4:89288781-89288800 | MS.gene034104:intron | 40.0% | |
| AGATGCTTCATTCCAGGAAA+AGG | - | chr4.4:89286955-89286974 | None:intergenic | 40.0% | |
| AGATTTGTCCTATGTTGCAC+CGG | + | chr4.4:89286758-89286777 | MS.gene034104:intron | 40.0% | |
| AGTCATACAGTCCCTTTCAT+AGG | + | chr4.4:89287326-89287345 | MS.gene034104:intron | 40.0% | |
| ATGAAAGGGACTGTATGACT+AGG | - | chr4.4:89287326-89287345 | None:intergenic | 40.0% | |
| ATGTAACTAACCGAAACTGG+TGG | - | chr4.4:89286463-89286482 | None:intergenic | 40.0% | |
| ATTAGTTCGAGCTTTCGTGA+AGG | + | chr4.4:89287684-89287703 | MS.gene034104:intron | 40.0% | |
| CAATGTCGATATTGTTAGGC+TGG | + | chr4.4:89289168-89289187 | MS.gene034104:intron | 40.0% | |
| CATCAATGATTGCTGATGCA+GGG | + | chr4.4:89289506-89289525 | MS.gene034104:CDS | 40.0% | |
| CTCACAGTTATGTGAGTTTC+AGG | + | chr4.4:89289220-89289239 | MS.gene034104:intron | 40.0% | |
| CTGAAACTCACATAACTGTG+AGG | - | chr4.4:89289222-89289241 | None:intergenic | 40.0% | |
| CTTGAAAGAAAAGGGTAGTC+AGG | + | chr4.4:89288734-89288753 | MS.gene034104:intron | 40.0% | |
| GAATAGTCACCAAAAGGTTG+GGG | + | chr4.4:89286385-89286404 | MS.gene034104:CDS | 40.0% | |
| GACTAACATGGCTTAGTTCA+AGG | - | chr4.4:89288055-89288074 | None:intergenic | 40.0% | |
| GAGTATGAGAATCTAGTTGG+GGG | + | chr4.4:89289541-89289560 | MS.gene034104:CDS | 40.0% | |
| GGAAGAAGGCTATGATTCTA+TGG | - | chr4.4:89288507-89288526 | None:intergenic | 40.0% | |
| GGAATAGTCACCAAAAGGTT+GGG | + | chr4.4:89286384-89286403 | MS.gene034104:CDS | 40.0% | |
| GTAAAATTCTTACCATGGGG+AGG | + | chr4.4:89287238-89287257 | MS.gene034104:intron | 40.0% | |
| GTCATACAGTCCCTTTCATA+GGG | + | chr4.4:89287327-89287346 | MS.gene034104:intron | 40.0% | |
| GTCATGTTTGTATCCTACAC+CGG | - | chr4.4:89286780-89286799 | None:intergenic | 40.0% | |
| TCAATTTCACAATGCTCCAC+AGG | - | chr4.4:89286525-89286544 | None:intergenic | 40.0% | |
| TCCAGGAAAAGGATTCAACA+TGG | - | chr4.4:89286944-89286963 | None:intergenic | 40.0% | |
| TCGACATTGCCAATTAAGCT+AGG | - | chr4.4:89289157-89289176 | None:intergenic | 40.0% | |
| TCTATAGGTCTGTTCAGGAA+TGG | - | chr4.4:89288764-89288783 | None:intergenic | 40.0% | |
| TCTGATCTCAACATTGTCTG+CGG | - | chr4.4:89289046-89289065 | None:intergenic | 40.0% | |
| TCTTAGTGAAGCTCATAGGT+TGG | + | chr4.4:89287894-89287913 | MS.gene034104:intron | 40.0% | |
| TGATTCTATGGCACTTTACG+TGG | - | chr4.4:89288495-89288514 | None:intergenic | 40.0% | |
| TGCATAGACTGTGGAAAGAA+AGG | + | chr4.4:89286680-89286699 | MS.gene034104:CDS | 40.0% | |
| TGTTACTCTTCTTCTCTTGC+AGG | + | chr4.4:89288553-89288572 | MS.gene034104:intron | 40.0% | |
| TGTTGAATGTTGGCAAACAG+CGG | + | chr4.4:89287620-89287639 | MS.gene034104:CDS | 40.0% | |
| TTCTCAGTTATTCCACGCAT+AGG | + | chr4.4:89288591-89288610 | MS.gene034104:CDS | 40.0% | |
| ! | AAAGCGCTAGAGAATTGTGT+GGG | + | chr4.4:89288413-89288432 | MS.gene034104:intron | 40.0% |
| ! | AAGGAATTGATAACCTGTGG+GGG | - | chr4.4:89288678-89288697 | None:intergenic | 40.0% |
| ! | AGAAGATGGTTCCCTTGTTT+GGG | + | chr4.4:89287774-89287793 | MS.gene034104:CDS | 40.0% |
| ! | CTTTGGGAATAGTCACCAAA+AGG | + | chr4.4:89286379-89286398 | MS.gene034104:CDS | 40.0% |
| ! | GAAGGAATTGATAACCTGTG+GGG | - | chr4.4:89288679-89288698 | None:intergenic | 40.0% |
| ! | GGTTCACGAGTTAATTTGGT+TGG | - | chr4.4:89288474-89288493 | None:intergenic | 40.0% |
| ! | GTGAATAAAAGCGTAGAGTG+AGG | + | chr4.4:89288843-89288862 | MS.gene034104:intron | 40.0% |
| ! | TCCATGTTGAATCCTTTTCC+TGG | + | chr4.4:89286940-89286959 | MS.gene034104:CDS | 40.0% |
| ! | TGGAATGAAGCATCTTGATG+TGG | + | chr4.4:89286960-89286979 | MS.gene034104:CDS | 40.0% |
| !! | AACAGGGTATTGAAACATGG+CGG | + | chr4.4:89288017-89288036 | MS.gene034104:intron | 40.0% |
| !! | CGGTTTTATCGATGTTCTAG+AGG | + | chr4.4:89287558-89287577 | MS.gene034104:CDS | 40.0% |
| !! | TGTCCGTGTTAGTTCTGTAT+AGG | + | chr4.4:89286872-89286891 | MS.gene034104:intron | 40.0% |
| AAAACTAGTCACGGTCCGTA+AGG | + | chr4.4:89289131-89289150 | MS.gene034104:intron | 45.0% | |
| AAAGCGTAGAGTGAGGAAGA+TGG | + | chr4.4:89288850-89288869 | MS.gene034104:intron | 45.0% | |
| AAAGGTTGGAACCACTTGTG+AGG | + | chr4.4:89287268-89287287 | MS.gene034104:intron | 45.0% | |
| AAGCGTAGAGTGAGGAAGAT+GGG | + | chr4.4:89288851-89288870 | MS.gene034104:intron | 45.0% | |
| AAGGTTGGAACCACTTGTGA+GGG | + | chr4.4:89287269-89287288 | MS.gene034104:intron | 45.0% | |
| AATGTCAAGAAAGCCGTGAC+GGG | + | chr4.4:89289427-89289446 | MS.gene034104:intron | 45.0% | |
| ACAGCTGAATGTGGAAGACT+GGG | - | chr4.4:89288970-89288989 | None:intergenic | 45.0% | |
| AGAATGTAGAAGCCTGGAAG+TGG | - | chr4.4:89286436-89286455 | None:intergenic | 45.0% | |
| ATTTCCCTCCACCCAAACAA+GGG | - | chr4.4:89287788-89287807 | None:intergenic | 45.0% | |
| CAACAGATAATGTGTCTCGG+GGG | + | chr4.4:89288340-89288359 | MS.gene034104:intron | 45.0% | |
| CACATTCAGCTGTAAGAGGA+AGG | + | chr4.4:89288977-89288996 | MS.gene034104:intron | 45.0% | |
| CACGGCTTTCTTGACATTTG+AGG | - | chr4.4:89289425-89289444 | None:intergenic | 45.0% | |
| CAGCATTATGTTCCACTTCC+AGG | + | chr4.4:89286421-89286440 | MS.gene034104:CDS | 45.0% | |
| CATGGCTTAGTTCAAGGCAT+AGG | - | chr4.4:89288049-89288068 | None:intergenic | 45.0% | |
| CTGGAAGTGGAACATAATGC+TGG | - | chr4.4:89286423-89286442 | None:intergenic | 45.0% | |
| CTTCCACATTCAGCTGTAAG+AGG | + | chr4.4:89288973-89288992 | MS.gene034104:intron | 45.0% | |
| CTTCCTCTTACAGCTGAATG+TGG | - | chr4.4:89288979-89288998 | None:intergenic | 45.0% | |
| GAGAAGATGGTTCCCTTGTT+TGG | + | chr4.4:89287773-89287792 | MS.gene034104:CDS | 45.0% | |
| GAGTGGTTGCCATTCATTCA+GGG | + | chr4.4:89289563-89289582 | MS.gene034104:CDS | 45.0% | |
| GCAGTGAACTGAACTGTATC+CGG | - | chr4.4:89288803-89288822 | None:intergenic | 45.0% | |
| GCATCAATGATTGCTGATGC+AGG | + | chr4.4:89289505-89289524 | MS.gene034104:CDS | 45.0% | |
| GCCAATTAAGCTAGGCCTTA+CGG | - | chr4.4:89289149-89289168 | None:intergenic | 45.0% | |
| GCTAGAGAATTGTGTGGGAA+AGG | + | chr4.4:89288418-89288437 | MS.gene034104:intron | 45.0% | |
| GGGAATAGTCACCAAAAGGT+TGG | + | chr4.4:89286383-89286402 | MS.gene034104:CDS | 45.0% | |
| GTATCCGGACATCTTGTAGA+AGG | - | chr4.4:89288788-89288807 | None:intergenic | 45.0% | |
| GTTGAATGTTGGCAAACAGC+GGG | + | chr4.4:89287621-89287640 | MS.gene034104:CDS | 45.0% | |
| TACAGCTGAATGTGGAAGAC+TGG | - | chr4.4:89288971-89288990 | None:intergenic | 45.0% | |
| TATTCCACGCATAGGAGAGA+TGG | + | chr4.4:89288599-89288618 | MS.gene034104:CDS | 45.0% | |
| TCCGTAAGGCCTAGCTTAAT+TGG | + | chr4.4:89289145-89289164 | MS.gene034104:intron | 45.0% | |
| TTAGGCTGGACATCTTCATC+CGG | + | chr4.4:89289182-89289201 | MS.gene034104:intron | 45.0% | |
| ! | ATGAAGCATCTTGATGTGGC+TGG | + | chr4.4:89286964-89286983 | MS.gene034104:CDS | 45.0% |
| ! | CAAAGCGCTAGAGAATTGTG+TGG | + | chr4.4:89288412-89288431 | MS.gene034104:intron | 45.0% |
| !! | ATGAAGTATGGACTGGTCAG+AGG | + | chr4.4:89287186-89287205 | MS.gene034104:intron | 45.0% |
| !! | TGAAGTATGGACTGGTCAGA+GGG | + | chr4.4:89287187-89287206 | MS.gene034104:intron | 45.0% |
| !! | AATATAAATTATTTATAGAA+TGG | - | chr4.4:89286720-89286739 | None:intergenic | 5.0% |
| !! | AATTAAAAATTTAAGTAAAT+TGG | + | chr4.4:89287122-89287141 | MS.gene034104:intron | 5.0% |
| AAGCAGAGAGGGCTTCAAGA+CGG | + | chr4.4:89287538-89287557 | MS.gene034104:CDS | 50.0% | |
| AAGCATCTTGATGTGGCTGG+TGG | + | chr4.4:89286967-89286986 | MS.gene034104:CDS | 50.0% | |
| AGTCTAGAGACCCTCACAAG+TGG | - | chr4.4:89287282-89287301 | None:intergenic | 50.0% | |
| ATCCTACACCGGTGCAACAT+AGG | - | chr4.4:89286769-89286788 | None:intergenic | 50.0% | |
| CAGAAAAGGGTAACCCGTCA+CGG | - | chr4.4:89289443-89289462 | None:intergenic | 50.0% | |
| CAGCTGAATGTGGAAGACTG+GGG | - | chr4.4:89288969-89288988 | None:intergenic | 50.0% | |
| CATTCTCACGCCACCAGTTT+CGG | + | chr4.4:89286450-89286469 | MS.gene034104:CDS | 50.0% | |
| CATTTCCCTCCACCCAAACA+AGG | - | chr4.4:89287789-89287808 | None:intergenic | 50.0% | |
| CTCACATAACTGTGAGGTCC+CGG | - | chr4.4:89289216-89289235 | None:intergenic | 50.0% | |
| GGACTGTATGACTAGGACGA+TGG | - | chr4.4:89287319-89287338 | None:intergenic | 50.0% | |
| GGAGTGGTTGCCATTCATTC+AGG | + | chr4.4:89289562-89289581 | MS.gene034104:CDS | 50.0% | |
| GTGAGGAAGATGGGTCCAAT+TGG | + | chr4.4:89288860-89288879 | MS.gene034104:intron | 50.0% | |
| TAGGCTGGACATCTTCATCC+GGG | + | chr4.4:89289183-89289202 | MS.gene034104:intron | 50.0% | |
| TCACATAACTGTGAGGTCCC+GGG | - | chr4.4:89289215-89289234 | None:intergenic | 50.0% | |
| TCTTCATCCGGGTTCAAACC+CGG | + | chr4.4:89289194-89289213 | MS.gene034104:intron | 50.0% | |
| TGAGAATCTAGTTGGGGGAG+TGG | + | chr4.4:89289546-89289565 | MS.gene034104:CDS | 50.0% | |
| ! | AGATGGTTCCCTTGTTTGGG+TGG | + | chr4.4:89287777-89287796 | MS.gene034104:CDS | 50.0% |
| ! | CGAAGAAGAAAAGGCACGCA+TGG | + | chr4.4:89286591-89286610 | MS.gene034104:CDS | 50.0% |
| ! | GAAGAAAAGGCACGCATGGT+TGG | + | chr4.4:89286595-89286614 | MS.gene034104:CDS | 50.0% |
| CCATGGGGAGGTCCAATGAA+AGG | + | chr4.4:89287250-89287269 | MS.gene034104:intron | 55.0% | |
| CCTTTCATTGGACCTCCCCA+TGG | - | chr4.4:89287253-89287272 | None:intergenic | 55.0% | |
| CGCATAGGAGAGATGGTTGC+TGG | + | chr4.4:89288606-89288625 | MS.gene034104:CDS | 55.0% | |
| CTTCATCCGGGTTCAAACCC+GGG | + | chr4.4:89289195-89289214 | MS.gene034104:intron | 55.0% | |
| GCAACCATCTCTCCTATGCG+TGG | - | chr4.4:89288606-89288625 | None:intergenic | 55.0% | |
| GGCGTGAGAATGTAGAAGCC+TGG | - | chr4.4:89286442-89286461 | None:intergenic | 55.0% | |
| GGGGAGGTCCAATGAAAGGT+TGG | + | chr4.4:89287254-89287273 | MS.gene034104:intron | 55.0% | |
| GTGCTGGGTTGCATAGACTG+TGG | + | chr4.4:89286671-89286690 | MS.gene034104:CDS | 55.0% | |
| TAACCTGTGGGGGAAAACGC+CGG | - | chr4.4:89288668-89288687 | None:intergenic | 55.0% | |
| ! | GGTTCCCTTGTTTGGGTGGA+GGG | + | chr4.4:89287781-89287800 | MS.gene034104:CDS | 55.0% |
| ! | GTCCTATGTTGCACCGGTGT+AGG | + | chr4.4:89286764-89286783 | MS.gene034104:intron | 55.0% |
| ! | TGGTTCCCTTGTTTGGGTGG+AGG | + | chr4.4:89287780-89287799 | MS.gene034104:CDS | 55.0% |
| !! | AAACAGCGGGCTGCCGAAAA+AGG | + | chr4.4:89287634-89287653 | MS.gene034104:CDS | 55.0% |
| !! | GGGTATTGAAACATGGCGGC+AGG | + | chr4.4:89288021-89288040 | MS.gene034104:intron | 55.0% |
| CTTGATGTGGCTGGTGGCAC+AGG | + | chr4.4:89286973-89286992 | MS.gene034104:CDS | 60.0% | |
| TGAGGTCCCGGGTTTGAACC+CGG | - | chr4.4:89289204-89289223 | None:intergenic | 60.0% | |
| ! | TATCCGGCGTTTTCCCCCAC+AGG | + | chr4.4:89288662-89288681 | MS.gene034104:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 89286375 | 89289597 | 89286375 | ID=MS.gene034104 |
| chr4.4 | mRNA | 89286375 | 89289597 | 89286375 | ID=MS.gene034104.t1;Parent=MS.gene034104 |
| chr4.4 | exon | 89286375 | 89286471 | 89286375 | ID=MS.gene034104.t1.exon1;Parent=MS.gene034104.t1 |
| chr4.4 | CDS | 89286375 | 89286471 | 89286375 | ID=cds.MS.gene034104.t1;Parent=MS.gene034104.t1 |
| chr4.4 | exon | 89286575 | 89286701 | 89286575 | ID=MS.gene034104.t1.exon2;Parent=MS.gene034104.t1 |
| chr4.4 | CDS | 89286575 | 89286701 | 89286575 | ID=cds.MS.gene034104.t1;Parent=MS.gene034104.t1 |
| chr4.4 | exon | 89286933 | 89286994 | 89286933 | ID=MS.gene034104.t1.exon3;Parent=MS.gene034104.t1 |
| chr4.4 | CDS | 89286933 | 89286994 | 89286933 | ID=cds.MS.gene034104.t1;Parent=MS.gene034104.t1 |
| chr4.4 | exon | 89287497 | 89287655 | 89287497 | ID=MS.gene034104.t1.exon4;Parent=MS.gene034104.t1 |
| chr4.4 | CDS | 89287497 | 89287655 | 89287497 | ID=cds.MS.gene034104.t1;Parent=MS.gene034104.t1 |
| chr4.4 | exon | 89287767 | 89287911 | 89287767 | ID=MS.gene034104.t1.exon5;Parent=MS.gene034104.t1 |
| chr4.4 | CDS | 89287767 | 89287911 | 89287767 | ID=cds.MS.gene034104.t1;Parent=MS.gene034104.t1 |
| chr4.4 | exon | 89288022 | 89288093 | 89288022 | ID=MS.gene034104.t1.exon6;Parent=MS.gene034104.t1 |
| chr4.4 | CDS | 89288022 | 89288093 | 89288022 | ID=cds.MS.gene034104.t1;Parent=MS.gene034104.t1 |
| chr4.4 | exon | 89288575 | 89288683 | 89288575 | ID=MS.gene034104.t1.exon7;Parent=MS.gene034104.t1 |
| chr4.4 | CDS | 89288575 | 89288683 | 89288575 | ID=cds.MS.gene034104.t1;Parent=MS.gene034104.t1 |
| chr4.4 | exon | 89289496 | 89289597 | 89289496 | ID=MS.gene034104.t1.exon8;Parent=MS.gene034104.t1 |
| chr4.4 | CDS | 89289496 | 89289597 | 89289496 | ID=cds.MS.gene034104.t1;Parent=MS.gene034104.t1 |
| Gene Sequence |
| Protein sequence |
