Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034112.t1 | XP_024637148.1 | 70.6 | 326 | 18 | 1 | 1 | 248 | 1 | 326 | 2.50E-113 | 418.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034112.t1 | Q9SAH9 | 53.8 | 182 | 79 | 2 | 11 | 192 | 6 | 182 | 2.2e-49 | 197.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034112.t1 | A0A072UFZ3 | 71.3 | 324 | 17 | 2 | 1 | 248 | 1 | 324 | 5.2e-113 | 416.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034112 | MS.gene63037 | PPI |
| MS.gene96654 | MS.gene034112 | PPI |
| MS.gene034112 | MS.gene65685 | PPI |
| MS.gene034112 | MS.gene053809 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034112.t1 | MTR_4g009690 | 97.906 | 191 | 4 | 0 | 1 | 191 | 1 | 191 | 4.20e-135 | 383 |
| MS.gene034112.t1 | MTR_4g009690 | 95.455 | 44 | 2 | 0 | 205 | 248 | 281 | 324 | 2.76e-20 | 88.2 |
| MS.gene034112.t1 | MTR_4g009690 | 97.906 | 191 | 4 | 0 | 1 | 191 | 1 | 191 | 4.35e-135 | 383 |
| MS.gene034112.t1 | MTR_4g009690 | 95.455 | 44 | 2 | 0 | 205 | 248 | 282 | 325 | 2.91e-20 | 88.2 |
| MS.gene034112.t1 | MTR_4g009040 | 96.335 | 191 | 7 | 0 | 1 | 191 | 1 | 191 | 4.03e-133 | 379 |
| MS.gene034112.t1 | MTR_4g009040 | 97.727 | 44 | 1 | 0 | 205 | 248 | 282 | 325 | 3.66e-21 | 90.9 |
| MS.gene034112.t1 | MTR_4g009040 | 94.359 | 195 | 7 | 1 | 1 | 191 | 1 | 195 | 6.15e-131 | 373 |
| MS.gene034112.t1 | MTR_4g009040 | 97.727 | 44 | 1 | 0 | 205 | 248 | 286 | 329 | 3.72e-21 | 90.9 |
| MS.gene034112.t1 | MTR_4g006940 | 57.542 | 179 | 68 | 3 | 4 | 182 | 11 | 181 | 4.30e-65 | 204 |
| MS.gene034112.t1 | MTR_4g006940 | 57.542 | 179 | 68 | 3 | 4 | 182 | 11 | 181 | 4.30e-65 | 204 |
| MS.gene034112.t1 | MTR_4g006940 | 57.542 | 179 | 68 | 3 | 4 | 182 | 11 | 181 | 3.49e-64 | 203 |
| MS.gene034112.t1 | MTR_2g104960 | 58.382 | 173 | 67 | 2 | 13 | 185 | 20 | 187 | 5.87e-63 | 200 |
| MS.gene034112.t1 | MTR_5g072620 | 46.448 | 183 | 97 | 1 | 11 | 192 | 3 | 185 | 3.55e-52 | 172 |
| MS.gene034112.t1 | MTR_8g062440 | 49.462 | 186 | 88 | 5 | 11 | 192 | 6 | 189 | 1.28e-51 | 171 |
| MS.gene034112.t1 | MTR_8g062440 | 49.462 | 186 | 88 | 5 | 11 | 192 | 6 | 189 | 1.90e-51 | 170 |
| MS.gene034112.t1 | MTR_2g101330 | 48.370 | 184 | 93 | 2 | 10 | 191 | 2 | 185 | 4.23e-51 | 169 |
| MS.gene034112.t1 | MTR_8g062440 | 49.733 | 187 | 87 | 6 | 11 | 192 | 6 | 190 | 8.57e-51 | 169 |
| MS.gene034112.t1 | MTR_3g005170 | 48.370 | 184 | 89 | 5 | 13 | 192 | 10 | 191 | 1.12e-50 | 167 |
| MS.gene034112.t1 | MTR_3g005170 | 48.370 | 184 | 89 | 5 | 13 | 192 | 10 | 191 | 3.76e-50 | 167 |
| MS.gene034112.t1 | MTR_3g005210 | 48.404 | 188 | 91 | 5 | 9 | 192 | 2 | 187 | 6.12e-50 | 166 |
| MS.gene034112.t1 | MTR_2g028620 | 48.148 | 189 | 91 | 4 | 8 | 191 | 5 | 191 | 7.49e-50 | 166 |
| MS.gene034112.t1 | MTR_2g028620 | 48.148 | 189 | 91 | 4 | 8 | 191 | 5 | 191 | 2.17e-49 | 165 |
| MS.gene034112.t1 | MTR_4g077130 | 47.849 | 186 | 91 | 5 | 11 | 192 | 7 | 190 | 5.39e-49 | 164 |
| MS.gene034112.t1 | MTR_3g031650 | 44.262 | 183 | 101 | 1 | 11 | 192 | 3 | 185 | 7.48e-49 | 162 |
| MS.gene034112.t1 | MTR_4g077100 | 47.849 | 186 | 91 | 5 | 11 | 192 | 9 | 192 | 1.23e-48 | 162 |
| MS.gene034112.t1 | MTR_3g031650 | 44.262 | 183 | 101 | 1 | 11 | 192 | 3 | 185 | 2.17e-48 | 162 |
| MS.gene034112.t1 | MTR_4g077100 | 47.849 | 186 | 91 | 5 | 11 | 192 | 9 | 192 | 4.11e-48 | 162 |
| MS.gene034112.t1 | MTR_8g062110 | 45.918 | 196 | 99 | 6 | 11 | 201 | 7 | 200 | 5.66e-48 | 160 |
| MS.gene034112.t1 | MTR_8g062110 | 45.918 | 196 | 99 | 6 | 11 | 201 | 7 | 200 | 7.74e-48 | 160 |
| MS.gene034112.t1 | MTR_8g062110 | 47.312 | 186 | 92 | 5 | 11 | 192 | 16 | 199 | 1.43e-47 | 160 |
| MS.gene034112.t1 | MTR_8g062110 | 47.312 | 186 | 92 | 5 | 11 | 192 | 7 | 190 | 1.47e-47 | 160 |
| MS.gene034112.t1 | MTR_8g062710 | 75.000 | 96 | 14 | 1 | 10 | 105 | 17 | 102 | 2.94e-42 | 140 |
| MS.gene034112.t1 | MTR_5g056600 | 42.077 | 183 | 99 | 3 | 14 | 192 | 5 | 184 | 9.41e-42 | 145 |
| MS.gene034112.t1 | MTR_1g022440 | 42.935 | 184 | 97 | 6 | 13 | 191 | 8 | 188 | 8.89e-41 | 143 |
| MS.gene034112.t1 | MTR_1g022445 | 42.935 | 184 | 97 | 6 | 13 | 191 | 8 | 188 | 9.64e-41 | 143 |
| MS.gene034112.t1 | MTR_3g005170 | 41.848 | 184 | 70 | 5 | 13 | 192 | 10 | 160 | 7.26e-38 | 134 |
| MS.gene034112.t1 | MTR_4g081440 | 40.594 | 202 | 107 | 6 | 1 | 191 | 8 | 207 | 1.11e-37 | 135 |
| MS.gene034112.t1 | MTR_4g081440 | 40.594 | 202 | 107 | 6 | 1 | 191 | 12 | 211 | 1.30e-37 | 135 |
| MS.gene034112.t1 | MTR_0164s0070 | 52.713 | 129 | 59 | 2 | 10 | 136 | 2 | 130 | 7.32e-37 | 129 |
| MS.gene034112.t1 | MTR_4g092080 | 42.246 | 187 | 101 | 6 | 10 | 191 | 11 | 195 | 1.53e-34 | 127 |
| MS.gene034112.t1 | MTR_7g074710 | 40.526 | 190 | 102 | 7 | 9 | 191 | 4 | 189 | 2.26e-33 | 123 |
| MS.gene034112.t1 | MTR_7g074730 | 38.830 | 188 | 106 | 6 | 10 | 191 | 5 | 189 | 2.72e-33 | 123 |
| MS.gene034112.t1 | MTR_4g023730 | 42.162 | 185 | 91 | 7 | 8 | 182 | 3 | 181 | 4.64e-33 | 122 |
| MS.gene034112.t1 | MTR_7g074820 | 40.426 | 188 | 103 | 6 | 10 | 191 | 5 | 189 | 1.12e-32 | 121 |
| MS.gene034112.t1 | MTR_7g074880 | 38.624 | 189 | 107 | 5 | 9 | 191 | 4 | 189 | 6.67e-32 | 119 |
| MS.gene034112.t1 | MTR_7g074850 | 37.037 | 189 | 110 | 6 | 9 | 191 | 4 | 189 | 1.27e-30 | 116 |
| MS.gene034112.t1 | MTR_5g029990 | 34.574 | 188 | 104 | 5 | 13 | 192 | 12 | 188 | 2.77e-26 | 103 |
| MS.gene034112.t1 | MTR_2g013230 | 33.862 | 189 | 98 | 7 | 7 | 178 | 2 | 180 | 6.33e-21 | 90.5 |
| MS.gene034112.t1 | MTR_6g406250 | 31.720 | 186 | 123 | 2 | 10 | 191 | 52 | 237 | 8.03e-21 | 89.0 |
| MS.gene034112.t1 | MTR_6g406250 | 31.720 | 186 | 123 | 2 | 10 | 191 | 52 | 237 | 2.57e-20 | 89.0 |
| MS.gene034112.t1 | MTR_2g013250 | 34.762 | 210 | 99 | 10 | 7 | 191 | 1 | 197 | 3.91e-20 | 88.2 |
| MS.gene034112.t1 | MTR_2g013260 | 37.821 | 156 | 84 | 7 | 7 | 154 | 2 | 152 | 4.00e-20 | 87.4 |
| MS.gene034112.t1 | MTR_2g013260 | 37.821 | 156 | 84 | 7 | 7 | 154 | 2 | 152 | 4.93e-20 | 88.2 |
| MS.gene034112.t1 | MTR_7g117190 | 36.667 | 150 | 84 | 6 | 12 | 154 | 6 | 151 | 5.55e-20 | 87.8 |
| MS.gene034112.t1 | MTR_7g117190 | 34.444 | 180 | 101 | 7 | 12 | 178 | 6 | 181 | 6.25e-20 | 87.0 |
| MS.gene034112.t1 | MTR_7g074870 | 38.194 | 144 | 82 | 5 | 52 | 191 | 11 | 151 | 7.16e-19 | 84.0 |
| MS.gene034112.t1 | MTR_8g062110 | 37.895 | 95 | 55 | 3 | 101 | 192 | 11 | 104 | 5.88e-14 | 68.6 |
| MS.gene034112.t1 | MTR_8g062110 | 37.895 | 95 | 55 | 3 | 101 | 192 | 11 | 104 | 1.28e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034112.t1 | AT2G33590 | 66.667 | 183 | 61 | 0 | 9 | 191 | 5 | 187 | 1.99e-87 | 262 |
| MS.gene034112.t1 | AT2G33600 | 63.441 | 186 | 68 | 0 | 6 | 191 | 2 | 187 | 1.28e-76 | 235 |
| MS.gene034112.t1 | AT1G80820 | 54.802 | 177 | 75 | 2 | 9 | 185 | 4 | 175 | 5.81e-63 | 198 |
| MS.gene034112.t1 | AT1G80820 | 55.429 | 175 | 73 | 2 | 11 | 185 | 6 | 175 | 2.21e-62 | 199 |
| MS.gene034112.t1 | AT1G76470 | 58.378 | 185 | 74 | 1 | 10 | 191 | 4 | 188 | 1.93e-61 | 196 |
| MS.gene034112.t1 | AT1G15950 | 54.286 | 175 | 75 | 2 | 11 | 185 | 11 | 180 | 7.04e-61 | 193 |
| MS.gene034112.t1 | AT1G15950 | 54.286 | 175 | 75 | 2 | 11 | 185 | 11 | 180 | 9.42e-61 | 193 |
| MS.gene034112.t1 | AT1G15950 | 54.286 | 175 | 75 | 2 | 11 | 185 | 11 | 180 | 1.68e-60 | 192 |
| MS.gene034112.t1 | AT1G15950 | 54.286 | 175 | 75 | 2 | 11 | 185 | 11 | 180 | 2.44e-60 | 194 |
| MS.gene034112.t1 | AT1G15950 | 54.286 | 175 | 75 | 2 | 11 | 185 | 11 | 180 | 2.44e-60 | 194 |
| MS.gene034112.t1 | AT1G15950 | 54.286 | 175 | 75 | 2 | 11 | 185 | 11 | 180 | 3.94e-60 | 193 |
| MS.gene034112.t1 | AT1G09510 | 52.660 | 188 | 85 | 4 | 8 | 192 | 3 | 189 | 1.00e-56 | 184 |
| MS.gene034112.t1 | AT1G51410 | 51.872 | 187 | 84 | 5 | 10 | 192 | 6 | 190 | 6.91e-54 | 177 |
| MS.gene034112.t1 | AT2G02400 | 42.081 | 221 | 118 | 5 | 10 | 224 | 3 | 219 | 9.94e-54 | 176 |
| MS.gene034112.t1 | AT5G19440 | 52.151 | 186 | 83 | 5 | 11 | 192 | 8 | 191 | 1.71e-52 | 173 |
| MS.gene034112.t1 | AT1G09490 | 48.718 | 195 | 95 | 5 | 11 | 201 | 6 | 199 | 6.28e-52 | 171 |
| MS.gene034112.t1 | AT5G58490 | 46.237 | 186 | 99 | 1 | 8 | 192 | 4 | 189 | 3.61e-51 | 169 |
| MS.gene034112.t1 | AT1G66800 | 50.811 | 185 | 83 | 5 | 11 | 192 | 6 | 185 | 2.83e-50 | 167 |
| MS.gene034112.t1 | AT4G35420 | 48.387 | 186 | 89 | 4 | 10 | 191 | 5 | 187 | 9.17e-50 | 166 |
| MS.gene034112.t1 | AT1G09480 | 48.205 | 195 | 96 | 5 | 11 | 201 | 6 | 199 | 1.23e-49 | 166 |
| MS.gene034112.t1 | AT1G09500 | 44.712 | 208 | 105 | 5 | 11 | 208 | 6 | 213 | 1.75e-49 | 164 |
| MS.gene034112.t1 | AT1G09480 | 48.205 | 195 | 96 | 5 | 11 | 201 | 53 | 246 | 2.01e-49 | 166 |
| MS.gene034112.t1 | AT1G09500 | 44.712 | 208 | 105 | 5 | 11 | 208 | 6 | 213 | 6.22e-49 | 164 |
| MS.gene034112.t1 | AT5G42800 | 45.263 | 190 | 96 | 6 | 7 | 191 | 2 | 188 | 7.94e-42 | 147 |
| MS.gene034112.t1 | AT1G61720 | 41.935 | 186 | 101 | 6 | 11 | 191 | 11 | 194 | 4.54e-36 | 130 |
| MS.gene034112.t1 | AT1G09490 | 45.860 | 157 | 81 | 4 | 48 | 201 | 13 | 168 | 4.72e-35 | 127 |
| MS.gene034112.t1 | AT4G27250 | 37.931 | 203 | 112 | 6 | 1 | 191 | 1 | 201 | 1.13e-34 | 127 |
| MS.gene034112.t1 | AT4G27250 | 37.931 | 203 | 112 | 6 | 1 | 191 | 1 | 201 | 1.19e-34 | 127 |
| MS.gene034112.t1 | AT1G09500 | 41.765 | 170 | 90 | 4 | 48 | 208 | 10 | 179 | 4.29e-32 | 119 |
| MS.gene034112.t1 | AT2G45400 | 40.625 | 192 | 97 | 6 | 13 | 191 | 40 | 227 | 4.72e-31 | 115 |
| MS.gene034112.t1 | AT2G23910 | 33.333 | 195 | 113 | 5 | 7 | 192 | 1 | 187 | 5.08e-31 | 116 |
| MS.gene034112.t1 | AT2G23910 | 33.333 | 195 | 113 | 5 | 7 | 192 | 1 | 187 | 6.48e-31 | 115 |
| MS.gene034112.t1 | AT2G23910 | 34.054 | 185 | 108 | 4 | 14 | 192 | 11 | 187 | 7.64e-31 | 116 |
| MS.gene034112.t1 | AT1G68540 | 35.912 | 181 | 113 | 2 | 15 | 192 | 6 | 186 | 1.00e-30 | 116 |
| MS.gene034112.t1 | AT1G25460 | 36.872 | 179 | 110 | 2 | 15 | 191 | 6 | 183 | 1.89e-30 | 115 |
| MS.gene034112.t1 | AT2G45400 | 40.625 | 192 | 97 | 6 | 13 | 191 | 40 | 227 | 2.38e-30 | 116 |
| MS.gene034112.t1 | AT2G45400 | 40.625 | 192 | 97 | 6 | 13 | 191 | 40 | 227 | 2.42e-30 | 115 |
| MS.gene034112.t1 | AT4G30470 | 34.783 | 184 | 107 | 4 | 14 | 192 | 11 | 186 | 4.93e-28 | 108 |
| MS.gene034112.t1 | AT1G15950 | 52.439 | 82 | 39 | 0 | 104 | 185 | 1 | 82 | 3.08e-23 | 95.1 |
| MS.gene034112.t1 | AT2G23910 | 33.108 | 148 | 86 | 3 | 50 | 192 | 14 | 153 | 1.64e-20 | 88.2 |
| MS.gene034112.t1 | AT2G45400 | 36.364 | 176 | 95 | 7 | 27 | 191 | 1 | 170 | 5.49e-19 | 84.7 |
| MS.gene034112.t1 | AT5G14700 | 32.275 | 189 | 116 | 5 | 13 | 191 | 55 | 241 | 9.95e-17 | 79.0 |
| MS.gene034112.t1 | AT5G14700 | 32.275 | 189 | 116 | 5 | 13 | 191 | 55 | 241 | 1.16e-16 | 77.8 |
Find 55 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCAATCGCTTTATCTTT+TGG | 0.244785 | 4.4:-89403214 | None:intergenic |
| TTCAGCAAGTGTTCATATTT+CGG | 0.273006 | 4.4:-89402719 | None:intergenic |
| AAGAAGAAGGTGTGTGTAAC+TGG | 0.304763 | 4.4:+89401426 | MS.gene034112:CDS |
| ATATGAACACTTGCTGAAAC+TGG | 0.323661 | 4.4:+89402724 | MS.gene034112:CDS |
| CTGTTCTTCTGCTTCTGTCT+TGG | 0.343397 | 4.4:-89403425 | None:intergenic |
| ACTCTTCAAAGCAGATATCT+TGG | 0.353367 | 4.4:+89402769 | MS.gene034112:CDS |
| CTCAGAGAAACTGCAAAGTT+CGG | 0.359727 | 4.4:+89404673 | MS.gene034112:CDS |
| CTGGATTTCGCGAAAAGAAC+TGG | 0.363819 | 4.4:+89403451 | MS.gene034112:CDS |
| AAAGTTCGGGTTGGAAATTC+AGG | 0.368781 | 4.4:+89404687 | MS.gene034112:CDS |
| TTTGTGGTTGACTGTAAAAT+TGG | 0.369998 | 4.4:-89403495 | None:intergenic |
| CAAGACAGAAGCAGAAGAAC+AGG | 0.371007 | 4.4:+89403426 | MS.gene034112:CDS |
| AGAAACATTACCTCAGGATT+AGG | 0.383683 | 4.4:-89402872 | None:intergenic |
| TCCGTTTACTCCGCAATTGT+TGG | 0.399978 | 4.4:+89402800 | MS.gene034112:CDS |
| TCAGAGAAACTGCAAAGTTC+GGG | 0.407793 | 4.4:+89404674 | MS.gene034112:CDS |
| TCCATGGACAAAGTAACCTT+TGG | 0.412376 | 4.4:-89401493 | None:intergenic |
| TCCAACAATTGCGGAGTAAA+CGG | 0.413187 | 4.4:-89402801 | None:intergenic |
| TGACTCTGTTGAGAGCTATA+AGG | 0.425631 | 4.4:+89404730 | MS.gene034112:CDS |
| AAGCGATTGATGAGTCTTGT+TGG | 0.452091 | 4.4:+89403224 | MS.gene034112:CDS |
| AACCAAGCTACTTGAATTTG+TGG | 0.456133 | 4.4:-89403511 | None:intergenic |
| TATCTGCTTTGAAGAGTGTA+AGG | 0.460836 | 4.4:-89402763 | None:intergenic |
| CATGGAACTGTTAGAGAGCC+TGG | 0.466759 | 4.4:+89401510 | MS.gene034112:CDS |
| TCCAAAGGTTACTTTGTCCA+TGG | 0.474794 | 4.4:+89401492 | MS.gene034112:CDS |
| AACCACAAATTCAAGTAGCT+TGG | 0.483812 | 4.4:+89403509 | MS.gene034112:CDS |
| AGAAGCAGAAGAACAGGCCC+TGG | 0.487109 | 4.4:+89403432 | MS.gene034112:CDS |
| GGTACAACTGTTGAAGGTAC+AGG | 0.487565 | 4.4:-89402851 | None:intergenic |
| GGAGGCTGGATTACTTCAAT+CGG | 0.490044 | 4.4:+89404751 | MS.gene034112:CDS |
| GTGATTGAGCCTGCAGTGAC+GGG | 0.498748 | 4.4:+89403097 | MS.gene034112:CDS |
| AAGGTGTGTGTAACTGGAGC+AGG | 0.505575 | 4.4:+89401432 | MS.gene034112:CDS |
| CAGGAGGGTTTGTAGCATCA+TGG | 0.506329 | 4.4:+89401451 | MS.gene034112:CDS |
| GGGTTGGAAATTCAGGCCAT+TGG | 0.511092 | 4.4:+89404694 | MS.gene034112:CDS |
| GGATTAGGTACAACTGTTGA+AGG | 0.511645 | 4.4:-89402857 | None:intergenic |
| TTAGCAGTTCCCGTCACTGC+AGG | 0.514005 | 4.4:-89403106 | None:intergenic |
| GTTAAGCTTCTTCTTTCCAA+AGG | 0.521805 | 4.4:+89401477 | MS.gene034112:CDS |
| GTTGAGAGCTATAAGGAGGC+TGG | 0.522498 | 4.4:+89404737 | MS.gene034112:CDS |
| TTGGAAATTCAGGCCATTGG+AGG | 0.529338 | 4.4:+89404697 | MS.gene034112:CDS |
| TCAATGAGTGTTTCCTCCAA+TGG | 0.543548 | 4.4:-89404710 | None:intergenic |
| AGGAGATAATGGAAACAAGT+GGG | 0.545788 | 4.4:+89401391 | None:intergenic |
| CAGGCTCTCTAACAGTTCCA+TGG | 0.553939 | 4.4:-89401509 | None:intergenic |
| GTGTGTGTAACTGGAGCAGG+AGG | 0.579894 | 4.4:+89401435 | MS.gene034112:CDS |
| GAGGAGATAATGGAAACAAG+TGG | 0.582460 | 4.4:+89401390 | None:intergenic |
| AAGGTACAGGGCTAGCAACA+TGG | 0.584108 | 4.4:-89402838 | None:intergenic |
| AGAAACTGCAAAGTTCGGGT+TGG | 0.585764 | 4.4:+89404678 | MS.gene034112:CDS |
| AGTGATTGAGCCTGCAGTGA+CGG | 0.593594 | 4.4:+89403096 | MS.gene034112:CDS |
| TGCTGGCAGCTATATTGAGA+TGG | 0.610431 | 4.4:+89404631 | MS.gene034112:intron |
| GGGTGTTAATAACAAGAAGA+AGG | 0.612023 | 4.4:+89401413 | MS.gene034112:CDS |
| TGCACTGCATCCAACAATTG+CGG | 0.621267 | 4.4:-89402810 | None:intergenic |
| GTACAACTGTTGAAGGTACA+GGG | 0.621515 | 4.4:-89402850 | None:intergenic |
| GGAGATAATGGAAACAAGTG+GGG | 0.623500 | 4.4:+89401392 | None:intergenic |
| AGCTTGTCTCAAAGCTAATG+TGG | 0.639403 | 4.4:+89403138 | MS.gene034112:CDS |
| CTCTGTTGAGAGCTATAAGG+AGG | 0.642841 | 4.4:+89404733 | MS.gene034112:CDS |
| TTGACTGTAAAATTGGTCGA+TGG | 0.669205 | 4.4:-89403488 | None:intergenic |
| GAAAAGAACTGGACTTAACG+TGG | 0.670351 | 4.4:+89403462 | MS.gene034112:CDS |
| AACAGTTGTACCTAATCCTG+AGG | 0.672409 | 4.4:+89402862 | MS.gene034112:CDS |
| GAGATAATGGAAACAAGTGG+GGG | 0.689150 | 4.4:+89401393 | None:intergenic |
| TGTGTGTAACTGGAGCAGGA+GGG | 0.744318 | 4.4:+89401436 | MS.gene034112:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAATTTCATTATTATATA+TGG | + | chr4.4:89401874-89401893 | MS.gene034112:intron | 10.0% |
| !! | AATATCTTAAATATATATAC+AGG | - | chr4.4:89402190-89402209 | None:intergenic | 10.0% |
| !!! | CTAATAATATTTAATTTAAG+TGG | - | chr4.4:89404196-89404215 | None:intergenic | 10.0% |
| !!! | TATGTATTCTTTTTTTTTTT+TGG | + | chr4.4:89401646-89401665 | MS.gene034112:intron | 10.0% |
| !!! | TGAAATTTGTTAAATTATAA+TGG | - | chr4.4:89403882-89403901 | None:intergenic | 10.0% |
| !!! | TTTTTAATAAGAATTTGATA+AGG | - | chr4.4:89403571-89403590 | None:intergenic | 10.0% |
| !! | ATTATATATGGAAAGAAATA+AGG | + | chr4.4:89401886-89401905 | MS.gene034112:intron | 15.0% |
| !! | ATTATTTACTTTGTCTTATA+AGG | + | chr4.4:89402518-89402537 | MS.gene034112:intron | 15.0% |
| !!! | ATTTGAAGTTTTAAGAAATA+TGG | - | chr4.4:89402572-89402591 | None:intergenic | 15.0% |
| !!! | TAATATTTAATTTAAGTGGT+TGG | - | chr4.4:89404192-89404211 | None:intergenic | 15.0% |
| !! | CATAACTTCTATAAAATACT+TGG | + | chr4.4:89403655-89403674 | MS.gene034112:intron | 20.0% |
| !! | CTTATTTAACACAAAATTCT+TGG | - | chr4.4:89403366-89403385 | None:intergenic | 20.0% |
| !! | TATCATTATCATGTAAAACA+AGG | - | chr4.4:89403631-89403650 | None:intergenic | 20.0% |
| !!! | AGTATTTTATAGAAGTTATG+TGG | - | chr4.4:89403655-89403674 | None:intergenic | 20.0% |
| !!! | ATTTGTTAAATTATAATGGC+AGG | - | chr4.4:89403878-89403897 | None:intergenic | 20.0% |
| !!! | CTTTATCTTTTGGTAAATTA+GGG | - | chr4.4:89403207-89403226 | None:intergenic | 20.0% |
| !!! | GTTCTCATCAAAATTTTAAA+AGG | + | chr4.4:89403531-89403550 | MS.gene034112:intron | 20.0% |
| !!! | TGATACATACTTCAATTTTA+GGG | + | chr4.4:89401970-89401989 | MS.gene034112:intron | 20.0% |
| !!! | TTGATACATACTTCAATTTT+AGG | + | chr4.4:89401969-89401988 | MS.gene034112:intron | 20.0% |
| ! | AATTATTAATATGCCCTTCA+TGG | + | chr4.4:89403826-89403845 | MS.gene034112:intron | 25.0% |
| ! | ACATGTTTACTAGAATTTGT+AGG | - | chr4.4:89402442-89402461 | None:intergenic | 25.0% |
| ! | ACTGTTAATGTCAAAAACAT+AGG | + | chr4.4:89402134-89402153 | MS.gene034112:intron | 25.0% |
| ! | ATAGAAGTCATTAATTAGTG+AGG | + | chr4.4:89404295-89404314 | MS.gene034112:intron | 25.0% |
| ! | ATTATTAATATGCCCTTCAT+GGG | + | chr4.4:89403827-89403846 | MS.gene034112:intron | 25.0% |
| ! | CCAATGACAATTTGAAAAAA+CGG | - | chr4.4:89404516-89404535 | None:intergenic | 25.0% |
| ! | GTAAGAAATGTGAAAGATAA+GGG | + | chr4.4:89404250-89404269 | MS.gene034112:intron | 25.0% |
| ! | TCAAAAGAATGAAAGAATAG+AGG | - | chr4.4:89402644-89402663 | None:intergenic | 25.0% |
| ! | TGTAAGAAATGTGAAAGATA+AGG | + | chr4.4:89404249-89404268 | MS.gene034112:intron | 25.0% |
| ! | TTCATCTTGTCTTTATTAGA+AGG | + | chr4.4:89403947-89403966 | MS.gene034112:intron | 25.0% |
| ! | TTTGTATAGAATTGTAGAAG+AGG | + | chr4.4:89402607-89402626 | MS.gene034112:intron | 25.0% |
| !! | GCTTTATCTTTTGGTAAATT+AGG | - | chr4.4:89403208-89403227 | None:intergenic | 25.0% |
| !! | TATGTTAAAGTTTTCATTGC+TGG | + | chr4.4:89404614-89404633 | MS.gene034112:intron | 25.0% |
| !! | TCTATTCTTTCATTCTTTTG+AGG | + | chr4.4:89402643-89402662 | MS.gene034112:intron | 25.0% |
| !!! | TCATTTAGACAATTAGCTTT+TGG | - | chr4.4:89402015-89402034 | None:intergenic | 25.0% |
| !!! | TTCAATTTTAGGGACTAAAA+TGG | + | chr4.4:89401980-89401999 | MS.gene034112:intron | 25.0% |
| !!! | TTTTAGCCTTTATAAGTGTA+TGG | + | chr4.4:89403718-89403737 | MS.gene034112:intron | 25.0% |
| AACATTAGAAACATTACCTC+AGG | - | chr4.4:89402881-89402900 | None:intergenic | 30.0% | |
| ACTTGCTTGTATAGATTTGA+TGG | + | chr4.4:89404582-89404601 | MS.gene034112:intron | 30.0% | |
| AGACTACTGCAAAAATACTA+AGG | + | chr4.4:89403255-89403274 | MS.gene034112:CDS | 30.0% | |
| ATGGAAAGAAATAAGGCTTA+AGG | + | chr4.4:89401893-89401912 | MS.gene034112:intron | 30.0% | |
| ATTTGATAAGGCGTATTAGT+AGG | - | chr4.4:89403559-89403578 | None:intergenic | 30.0% | |
| GATTCATTTGATGTGTATGT+CGG | + | chr4.4:89402681-89402700 | MS.gene034112:intron | 30.0% | |
| TCAAATCTATACAAGCAAGT+AGG | - | chr4.4:89404582-89404601 | None:intergenic | 30.0% | |
| TCTCTACTAGAATAACAAGT+TGG | + | chr4.4:89402412-89402431 | MS.gene034112:intron | 30.0% | |
| TTATTAATATGCCCTTCATG+GGG | + | chr4.4:89403828-89403847 | MS.gene034112:intron | 30.0% | |
| TTCAGCAAGTGTTCATATTT+CGG | - | chr4.4:89402722-89402741 | None:intergenic | 30.0% | |
| TTTGTGGTTGACTGTAAAAT+TGG | - | chr4.4:89403498-89403517 | None:intergenic | 30.0% | |
| ! | TCATCAATCGCTTTATCTTT+TGG | - | chr4.4:89403217-89403236 | None:intergenic | 30.0% |
| !! | AACTTGTTATTCTAGTAGAG+AGG | - | chr4.4:89402413-89402432 | None:intergenic | 30.0% |
| !!! | CCGTTTTTTCAAATTGTCAT+TGG | + | chr4.4:89404513-89404532 | MS.gene034112:intron | 30.0% |
| !!! | TGTCACTTCATACTTTTTCA+TGG | - | chr4.4:89403043-89403062 | None:intergenic | 30.0% |
| AAACTGAAGCTTACTTCGTA+TGG | - | chr4.4:89404150-89404169 | None:intergenic | 35.0% | |
| AACCAAGCTACTTGAATTTG+TGG | - | chr4.4:89403514-89403533 | None:intergenic | 35.0% | |
| AACCACAAATTCAAGTAGCT+TGG | + | chr4.4:89403509-89403528 | MS.gene034112:CDS | 35.0% | |
| AATACTTGGTCATGTAACAG+TGG | + | chr4.4:89403669-89403688 | MS.gene034112:intron | 35.0% | |
| ACTCTTCAAAGCAGATATCT+TGG | + | chr4.4:89402769-89402788 | MS.gene034112:CDS | 35.0% | |
| AGAAACATTACCTCAGGATT+AGG | - | chr4.4:89402875-89402894 | None:intergenic | 35.0% | |
| ATACTTGAAGCATAATCTGC+AGG | + | chr4.4:89403069-89403088 | MS.gene034112:intron | 35.0% | |
| ATGAGATGAGAAATAGTACC+AGG | - | chr4.4:89401531-89401550 | None:intergenic | 35.0% | |
| CATTGGAGAATAAGTTTCGT+TGG | + | chr4.4:89403978-89403997 | MS.gene034112:intron | 35.0% | |
| CTGACAATCTTTCAACTTAC+TGG | - | chr4.4:89402972-89402991 | None:intergenic | 35.0% | |
| CTTCACCGTTATATTGTTCT+GGG | + | chr4.4:89403756-89403775 | MS.gene034112:intron | 35.0% | |
| GGGTGTTAATAACAAGAAGA+AGG | + | chr4.4:89401413-89401432 | MS.gene034112:CDS | 35.0% | |
| GGTTGAAAACAGAACACAAA+GGG | - | chr4.4:89402350-89402369 | None:intergenic | 35.0% | |
| GTATGGCCATACACTTATAA+AGG | - | chr4.4:89403727-89403746 | None:intergenic | 35.0% | |
| GTTAAGCTTCTTCTTTCCAA+AGG | + | chr4.4:89401477-89401496 | MS.gene034112:CDS | 35.0% | |
| TATTTGGAAAGGTCACATAC+AGG | - | chr4.4:89402383-89402402 | None:intergenic | 35.0% | |
| TGGTTGAAAACAGAACACAA+AGG | - | chr4.4:89402351-89402370 | None:intergenic | 35.0% | |
| TTCGTATGGTACTTGTAGTT+GGG | - | chr4.4:89404136-89404155 | None:intergenic | 35.0% | |
| TTGACTGTAAAATTGGTCGA+TGG | - | chr4.4:89403491-89403510 | None:intergenic | 35.0% | |
| TTGAGTCATGAGAACAACAA+AGG | + | chr4.4:89404371-89404390 | MS.gene034112:intron | 35.0% | |
| TTGCAAGTAATGTTGTTCGA+TGG | + | chr4.4:89404399-89404418 | MS.gene034112:intron | 35.0% | |
| ! | ATATGAACACTTGCTGAAAC+TGG | + | chr4.4:89402724-89402743 | MS.gene034112:CDS | 35.0% |
| ! | ATTGGCTTATGAGAATCACA+AGG | + | chr4.4:89404036-89404055 | MS.gene034112:intron | 35.0% |
| ! | CGTAGTTGATGCAATACTAT+TGG | + | chr4.4:89404018-89404037 | MS.gene034112:intron | 35.0% |
| ! | CTACTAGAATAACAAGTTGG+TGG | + | chr4.4:89402415-89402434 | MS.gene034112:intron | 35.0% |
| ! | TTTTGCAAGTTGCTACGTAT+TGG | - | chr4.4:89402045-89402064 | None:intergenic | 35.0% |
| !! | AGCTTCAGTTTCTAAAGTAG+TGG | + | chr4.4:89404159-89404178 | MS.gene034112:intron | 35.0% |
| !! | ATTGGTGTCAGTATTGTGTT+TGG | + | chr4.4:89404531-89404550 | MS.gene034112:intron | 35.0% |
| !! | TATCTGCTTTGAAGAGTGTA+AGG | - | chr4.4:89402766-89402785 | None:intergenic | 35.0% |
| !!! | TTTTTTTTTGGCTTTCGCAC+CGG | + | chr4.4:89401658-89401677 | MS.gene034112:intron | 35.0% |
| AACAGTTGTACCTAATCCTG+AGG | + | chr4.4:89402862-89402881 | MS.gene034112:CDS | 40.0% | |
| AAGGCAAAACTAGAACCACA+CGG | - | chr4.4:89402934-89402953 | None:intergenic | 40.0% | |
| AGCTTGTCTCAAAGCTAATG+TGG | + | chr4.4:89403138-89403157 | MS.gene034112:CDS | 40.0% | |
| ATTAGAAGGCTGTGACACAT+TGG | + | chr4.4:89403961-89403980 | MS.gene034112:intron | 40.0% | |
| ATTAGTCATCCACCATTGGT+GGG | - | chr4.4:89401691-89401710 | None:intergenic | 40.0% | |
| CCGAAAAATATCCCCATGAA+GGG | - | chr4.4:89403842-89403861 | None:intergenic | 40.0% | |
| CCTATGATGGTCATAAATGG+AGG | - | chr4.4:89402092-89402111 | None:intergenic | 40.0% | |
| CCTCCATTTATGACCATCAT+AGG | + | chr4.4:89402089-89402108 | MS.gene034112:intron | 40.0% | |
| CGACTCCCAGAACAATATAA+CGG | - | chr4.4:89403764-89403783 | None:intergenic | 40.0% | |
| CTCAGAGAAACTGCAAAGTT+CGG | + | chr4.4:89404673-89404692 | MS.gene034112:CDS | 40.0% | |
| CTGTAAGAGAGATCAAGAGA+AGG | + | chr4.4:89401932-89401951 | MS.gene034112:intron | 40.0% | |
| CTTCACATATGATCCAGAAC+TGG | + | chr4.4:89403392-89403411 | MS.gene034112:intron | 40.0% | |
| CTTCGTATGGTACTTGTAGT+TGG | - | chr4.4:89404137-89404156 | None:intergenic | 40.0% | |
| CTTTGTAGCTTCAAAACCTC+AGG | + | chr4.4:89404426-89404445 | MS.gene034112:intron | 40.0% | |
| GAAAAGAACTGGACTTAACG+TGG | + | chr4.4:89403462-89403481 | MS.gene034112:CDS | 40.0% | |
| GAACAATATAACGGTGAAGC+AGG | - | chr4.4:89403755-89403774 | None:intergenic | 40.0% | |
| GAGGCTTGAACTATTTGGAA+AGG | - | chr4.4:89402394-89402413 | None:intergenic | 40.0% | |
| GCTTCACCGTTATATTGTTC+TGG | + | chr4.4:89403755-89403774 | MS.gene034112:intron | 40.0% | |
| GGATTAGGTACAACTGTTGA+AGG | - | chr4.4:89402860-89402879 | None:intergenic | 40.0% | |
| GGTCCTATGATGGTCATAAA+TGG | - | chr4.4:89402095-89402114 | None:intergenic | 40.0% | |
| GTAGAGAGGCTTGAACTATT+TGG | - | chr4.4:89402399-89402418 | None:intergenic | 40.0% | |
| TAATTTGATACGTCACCGTG+TGG | + | chr4.4:89402916-89402935 | MS.gene034112:intron | 40.0% | |
| TCAATGAGTGTTTCCTCCAA+TGG | - | chr4.4:89404713-89404732 | None:intergenic | 40.0% | |
| TCAGAGAAACTGCAAAGTTC+GGG | + | chr4.4:89404674-89404693 | MS.gene034112:CDS | 40.0% | |
| TCCAACAATTGCGGAGTAAA+CGG | - | chr4.4:89402804-89402823 | None:intergenic | 40.0% | |
| TCCATGGACAAAGTAACCTT+TGG | - | chr4.4:89401496-89401515 | None:intergenic | 40.0% | |
| TGACTCTGTTGAGAGCTATA+AGG | + | chr4.4:89404730-89404749 | MS.gene034112:CDS | 40.0% | |
| TGGCATAACAATACCAGTTC+TGG | - | chr4.4:89403408-89403427 | None:intergenic | 40.0% | |
| ! | AAGAAGAAGGTGTGTGTAAC+TGG | + | chr4.4:89401426-89401445 | MS.gene034112:CDS | 40.0% |
| ! | AAGCGATTGATGAGTCTTGT+TGG | + | chr4.4:89403224-89403243 | MS.gene034112:CDS | 40.0% |
| ! | AGTTCTTTTCGCGAAATCCA+GGG | - | chr4.4:89403452-89403471 | None:intergenic | 40.0% |
| ! | CCCTTCATGGGGATATTTTT+CGG | + | chr4.4:89403839-89403858 | MS.gene034112:intron | 40.0% |
| ! | GTACAACTGTTGAAGGTACA+GGG | - | chr4.4:89402853-89402872 | None:intergenic | 40.0% |
| ! | TCCAAAGGTTACTTTGTCCA+TGG | + | chr4.4:89401492-89401511 | MS.gene034112:CDS | 40.0% |
| !! | AAAGTTCGGGTTGGAAATTC+AGG | + | chr4.4:89404687-89404706 | MS.gene034112:CDS | 40.0% |
| !! | CGTTATATTGTTCTGGGAGT+CGG | + | chr4.4:89403762-89403781 | MS.gene034112:intron | 40.0% |
| !!! | TGGTTCTAGTTTTGCCTTCA+TGG | + | chr4.4:89402936-89402955 | MS.gene034112:intron | 40.0% |
| AATACCGGGTTCGATTCCTA+GGG | - | chr4.4:89401758-89401777 | None:intergenic | 45.0% | |
| AGAAACTGCAAAGTTCGGGT+TGG | + | chr4.4:89404678-89404697 | MS.gene034112:CDS | 45.0% | |
| AGTGAGGCGATCATCTGTTA+AGG | + | chr4.4:89404311-89404330 | MS.gene034112:intron | 45.0% | |
| CAAGACAGAAGCAGAAGAAC+AGG | + | chr4.4:89403426-89403445 | MS.gene034112:CDS | 45.0% | |
| CACTATCGTCACACGAGATT+TGG | + | chr4.4:89404087-89404106 | MS.gene034112:intron | 45.0% | |
| CTCTGTTGAGAGCTATAAGG+AGG | + | chr4.4:89404733-89404752 | MS.gene034112:CDS | 45.0% | |
| CTGGATTTCGCGAAAAGAAC+TGG | + | chr4.4:89403451-89403470 | MS.gene034112:CDS | 45.0% | |
| CTGTTCTTCTGCTTCTGTCT+TGG | - | chr4.4:89403428-89403447 | None:intergenic | 45.0% | |
| CTTGAAGCATAATCTGCAGG+TGG | + | chr4.4:89403072-89403091 | MS.gene034112:intron | 45.0% | |
| GAAAGGTCACATACAGGTCA+TGG | - | chr4.4:89402377-89402396 | None:intergenic | 45.0% | |
| GACACACGTTAGACACTTCT+TGG | - | chr4.4:89402223-89402242 | None:intergenic | 45.0% | |
| GCCGAAAAATATCCCCATGA+AGG | - | chr4.4:89403843-89403862 | None:intergenic | 45.0% | |
| GCTTATGAGAATCACAAGGC+AGG | + | chr4.4:89404040-89404059 | MS.gene034112:intron | 45.0% | |
| GGAGGCTGGATTACTTCAAT+CGG | + | chr4.4:89404751-89404770 | MS.gene034112:CDS | 45.0% | |
| TATAACGGTGAAGCAGGTAG+TGG | - | chr4.4:89403749-89403768 | None:intergenic | 45.0% | |
| TATCGTCACACGAGATTTGG+TGG | + | chr4.4:89404090-89404109 | MS.gene034112:intron | 45.0% | |
| TATGAGAATCACAAGGCAGG+CGG | + | chr4.4:89404043-89404062 | MS.gene034112:intron | 45.0% | |
| TCACATACAGGTCATGGAGT+TGG | - | chr4.4:89402371-89402390 | None:intergenic | 45.0% | |
| TCCGTTTACTCCGCAATTGT+TGG | + | chr4.4:89402800-89402819 | MS.gene034112:CDS | 45.0% | |
| TGCACTGCATCCAACAATTG+CGG | - | chr4.4:89402813-89402832 | None:intergenic | 45.0% | |
| TGCTGGCAGCTATATTGAGA+TGG | + | chr4.4:89404631-89404650 | MS.gene034112:intron | 45.0% | |
| TTGGAAATTCAGGCCATTGG+AGG | + | chr4.4:89404697-89404716 | MS.gene034112:CDS | 45.0% | |
| ! | CAGTTCTTTTCGCGAAATCC+AGG | - | chr4.4:89403453-89403472 | None:intergenic | 45.0% |
| ! | CTGGTGTCTTTTCACCATGA+AGG | - | chr4.4:89402953-89402972 | None:intergenic | 45.0% |
| ! | GATTAGTCATCCACCATTGG+TGG | - | chr4.4:89401692-89401711 | None:intergenic | 45.0% |
| ! | GGTACAACTGTTGAAGGTAC+AGG | - | chr4.4:89402854-89402873 | None:intergenic | 45.0% |
| !! | CCAATGGTGGATGACTAATC+CGG | + | chr4.4:89401692-89401711 | MS.gene034112:intron | 45.0% |
| !! | GCTTCAAAACCTCAGGTTGA+AGG | + | chr4.4:89404433-89404452 | MS.gene034112:intron | 45.0% |
| !! | TAAAAAAATTGAAAATTAAT+AGG | - | chr4.4:89401558-89401577 | None:intergenic | 5.0% |
| AAGGTGTGTGTAACTGGAGC+AGG | + | chr4.4:89401432-89401451 | MS.gene034112:CDS | 50.0% | |
| ACCATCATAGGACCCTGACA+CGG | + | chr4.4:89402101-89402120 | MS.gene034112:intron | 50.0% | |
| AGTGATTGAGCCTGCAGTGA+CGG | + | chr4.4:89403096-89403115 | MS.gene034112:CDS | 50.0% | |
| ATACCGGGTTCGATTCCTAG+GGG | - | chr4.4:89401757-89401776 | None:intergenic | 50.0% | |
| ATGAGAATCACAAGGCAGGC+GGG | + | chr4.4:89404044-89404063 | MS.gene034112:intron | 50.0% | |
| CAGGAGGGTTTGTAGCATCA+TGG | + | chr4.4:89401451-89401470 | MS.gene034112:CDS | 50.0% | |
| CAGGCTCTCTAACAGTTCCA+TGG | - | chr4.4:89401512-89401531 | None:intergenic | 50.0% | |
| CATGGAACTGTTAGAGAGCC+TGG | + | chr4.4:89401510-89401529 | MS.gene034112:CDS | 50.0% | |
| CTAATCCGGCTCATGCGTAA+AGG | + | chr4.4:89401706-89401725 | MS.gene034112:intron | 50.0% | |
| GAATACCGGGTTCGATTCCT+AGG | - | chr4.4:89401759-89401778 | None:intergenic | 50.0% | |
| GACTCGTGTCGAATACAGAG+AGG | + | chr4.4:89402284-89402303 | MS.gene034112:intron | 50.0% | |
| GGGTTGGAAATTCAGGCCAT+TGG | + | chr4.4:89404694-89404713 | MS.gene034112:CDS | 50.0% | |
| GTTGAGAGCTATAAGGAGGC+TGG | + | chr4.4:89404737-89404756 | MS.gene034112:CDS | 50.0% | |
| TGTGTATGTCGGACAACTGC+AGG | + | chr4.4:89402692-89402711 | MS.gene034112:intron | 50.0% | |
| TGTGTGTAACTGGAGCAGGA+GGG | + | chr4.4:89401436-89401455 | MS.gene034112:CDS | 50.0% | |
| ! | AAGGTACAGGGCTAGCAACA+TGG | - | chr4.4:89402841-89402860 | None:intergenic | 50.0% |
| ! | ATCGTGTTGATGCCTGACAC+CGG | - | chr4.4:89404464-89404483 | None:intergenic | 50.0% |
| ! | CTCCTTCTAAGGATGTACCC+GGG | - | chr4.4:89401782-89401801 | None:intergenic | 50.0% |
| ! | GCTCCTTCTAAGGATGTACC+CGG | - | chr4.4:89401783-89401802 | None:intergenic | 50.0% |
| ! | TCCTTCTAAGGATGTACCCG+GGG | - | chr4.4:89401781-89401800 | None:intergenic | 50.0% |
| !! | AGTGTTGACTTGTCCGTGTC+AGG | - | chr4.4:89402117-89402136 | None:intergenic | 50.0% |
| !! | CCGGATTAGTCATCCACCAT+TGG | - | chr4.4:89401695-89401714 | None:intergenic | 50.0% |
| !! | GTGTTGACTTGTCCGTGTCA+GGG | - | chr4.4:89402116-89402135 | None:intergenic | 50.0% |
| AATCGAACCCGGTATTCCCC+GGG | + | chr4.4:89401762-89401781 | MS.gene034112:intron | 55.0% | |
| AGAAGCAGAAGAACAGGCCC+TGG | + | chr4.4:89403432-89403451 | MS.gene034112:CDS | 55.0% | |
| AGGATGTACCCGGGGAATAC+CGG | - | chr4.4:89401773-89401792 | None:intergenic | 55.0% | |
| CCAAGTTGCTTGCGCTCTAG+TGG | - | chr4.4:89401812-89401831 | None:intergenic | 55.0% | |
| CCACTAGAGCGCAAGCAACT+TGG | + | chr4.4:89401809-89401828 | MS.gene034112:intron | 55.0% | |
| GAATCGAACCCGGTATTCCC+CGG | + | chr4.4:89401761-89401780 | MS.gene034112:intron | 55.0% | |
| GCATGCCTTTACGCATGAGC+CGG | - | chr4.4:89401714-89401733 | None:intergenic | 55.0% | |
| GTGATTGAGCCTGCAGTGAC+GGG | + | chr4.4:89403097-89403116 | MS.gene034112:CDS | 55.0% | |
| GTGGCAAGGAGCTCCTTCTA+AGG | - | chr4.4:89401793-89401812 | None:intergenic | 55.0% | |
| GTGTGTGTAACTGGAGCAGG+AGG | + | chr4.4:89401435-89401454 | MS.gene034112:CDS | 55.0% | |
| TACCGGGTTCGATTCCTAGG+GGG | - | chr4.4:89401756-89401775 | None:intergenic | 55.0% | |
| TCCCCGGGTACATCCTTAGA+AGG | + | chr4.4:89401777-89401796 | MS.gene034112:intron | 55.0% | |
| TCCGTGTCAGGGTCCTATGA+TGG | - | chr4.4:89402105-89402124 | None:intergenic | 55.0% | |
| TTAGCAGTTCCCGTCACTGC+AGG | - | chr4.4:89403109-89403128 | None:intergenic | 55.0% | |
| TTCCCCCTAGGAATCGAACC+CGG | + | chr4.4:89401751-89401770 | MS.gene034112:intron | 55.0% | |
| TTCCTAGGGGGAACAACGCT+TGG | - | chr4.4:89401744-89401763 | None:intergenic | 55.0% | |
| TTGCTTGCGCTCTAGTGGCA+AGG | - | chr4.4:89401807-89401826 | None:intergenic | 55.0% | |
| ! | ACCATTGGTGGGTCGGAAAC+CGG | - | chr4.4:89401680-89401699 | None:intergenic | 55.0% |
| ! | ATGCGTAAAGGCATGCGCAC+TGG | + | chr4.4:89401718-89401737 | MS.gene034112:intron | 55.0% |
| ! | CGGTGAAGCAGGTAGTGGTA+TGG | - | chr4.4:89403744-89403763 | None:intergenic | 55.0% |
| ! | GTCATCCACCATTGGTGGGT+CGG | - | chr4.4:89401687-89401706 | None:intergenic | 55.0% |
| ! | TTGAAGGTGTGTCCGGTGTC+AGG | + | chr4.4:89404449-89404468 | MS.gene034112:intron | 55.0% |
| !! | CCTCAGGTTGAAGGTGTGTC+CGG | + | chr4.4:89404442-89404461 | MS.gene034112:intron | 55.0% |
| CCGGACACACCTTCAACCTG+AGG | - | chr4.4:89404445-89404464 | None:intergenic | 60.0% | |
| GGATGTACCCGGGGAATACC+GGG | - | chr4.4:89401772-89401791 | None:intergenic | 60.0% | |
| GGTTTCCGACCCACCAATGG+TGG | + | chr4.4:89401679-89401698 | MS.gene034112:intron | 60.0% | |
| ! | ACCGGTTTCCGACCCACCAA+TGG | + | chr4.4:89401676-89401695 | MS.gene034112:intron | 60.0% |
| ! | GGCCAAGCGTTGTTCCCCCT+AGG | + | chr4.4:89401739-89401758 | MS.gene034112:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 89401399 | 89404778 | 89401399 | ID=MS.gene034112 |
| chr4.4 | mRNA | 89401399 | 89404778 | 89401399 | ID=MS.gene034112.t1;Parent=MS.gene034112 |
| chr4.4 | exon | 89401399 | 89401531 | 89401399 | ID=MS.gene034112.t1.exon1;Parent=MS.gene034112.t1 |
| chr4.4 | CDS | 89401399 | 89401531 | 89401399 | ID=cds.MS.gene034112.t1;Parent=MS.gene034112.t1 |
| chr4.4 | exon | 89402714 | 89402883 | 89402714 | ID=MS.gene034112.t1.exon2;Parent=MS.gene034112.t1 |
| chr4.4 | CDS | 89402714 | 89402883 | 89402714 | ID=cds.MS.gene034112.t1;Parent=MS.gene034112.t1 |
| chr4.4 | exon | 89403091 | 89403276 | 89403091 | ID=MS.gene034112.t1.exon3;Parent=MS.gene034112.t1 |
| chr4.4 | CDS | 89403091 | 89403276 | 89403091 | ID=cds.MS.gene034112.t1;Parent=MS.gene034112.t1 |
| chr4.4 | exon | 89403409 | 89403530 | 89403409 | ID=MS.gene034112.t1.exon4;Parent=MS.gene034112.t1 |
| chr4.4 | CDS | 89403409 | 89403530 | 89403409 | ID=cds.MS.gene034112.t1;Parent=MS.gene034112.t1 |
| chr4.4 | exon | 89404640 | 89404778 | 89404640 | ID=MS.gene034112.t1.exon5;Parent=MS.gene034112.t1 |
| chr4.4 | CDS | 89404640 | 89404778 | 89404640 | ID=cds.MS.gene034112.t1;Parent=MS.gene034112.t1 |
| Gene Sequence |
| Protein sequence |
