AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034406

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034406.t1 MTR_2g087270 94.819 386 20 0 1 386 1 386 0.0 765
MS.gene034406.t1 MTR_4g109500 30.102 392 232 13 8 385 10 373 4.55e-47 170
MS.gene034406.t1 MTR_4g109500 30.102 392 232 13 8 385 10 373 5.55e-47 170
MS.gene034406.t1 MTR_8g093800 32.063 315 191 7 48 344 75 384 1.65e-42 154
MS.gene034406.t1 MTR_4g111985 32.249 338 219 6 50 384 218 548 6.71e-42 155
MS.gene034406.t1 MTR_4g111985 35.357 280 173 4 50 327 218 491 1.01e-41 153
MS.gene034406.t1 MTR_4g111985 35.461 282 174 4 50 329 257 532 1.37e-41 155
MS.gene034406.t1 MTR_4g055080 28.667 300 182 9 85 368 34 317 9.95e-26 107
MS.gene034406.t1 MTR_4g055080 28.667 300 182 9 85 368 59 342 1.46e-25 107
MS.gene034406.t1 MTR_3g118535 36.943 157 94 2 154 310 149 300 1.51e-25 108
MS.gene034406.t1 MTR_3g077160 34.066 182 110 3 154 335 161 332 4.84e-25 106
MS.gene034406.t1 MTR_5g004640 36.306 157 95 2 154 310 152 303 5.27e-24 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034406.t1 AT1G08460 71.850 373 103 2 14 384 3 375 0.0 572
MS.gene034406.t1 AT1G08460 75.912 274 64 2 15 286 4 277 4.38e-157 445
MS.gene034406.t1 AT5G61060 30.051 396 235 11 4 381 14 385 9.55e-46 167
MS.gene034406.t1 AT5G61070 30.670 388 223 12 12 381 55 414 4.82e-45 165
MS.gene034406.t1 AT5G61060 30.051 396 231 12 4 381 14 381 7.34e-45 164
MS.gene034406.t1 AT4G33470 29.630 351 211 9 48 374 78 416 2.77e-42 153
MS.gene034406.t1 AT3G18520 35.106 282 175 4 48 327 169 444 5.19e-38 142
MS.gene034406.t1 AT3G18520 34.859 284 177 4 48 329 169 446 7.29e-38 143
MS.gene034406.t1 AT3G18520 34.859 284 177 4 48 329 169 446 7.67e-38 143
MS.gene034406.t1 AT3G18520 34.859 284 177 4 48 329 169 446 1.18e-37 143
MS.gene034406.t1 AT3G44680 28.667 300 182 9 85 368 59 342 2.07e-27 112
MS.gene034406.t1 AT5G63110 29.260 311 174 11 48 335 36 323 2.22e-26 110
MS.gene034406.t1 AT4G38130 35.669 157 96 2 154 310 148 299 8.40e-24 102
MS.gene034406.t1 AT4G38130 35.669 157 96 2 154 310 148 299 1.34e-23 102
MS.gene034406.t1 AT5G35600 33.333 186 102 5 154 335 147 314 2.50e-19 89.4

Find 104 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATATCAGGCTCAAATTTA+TGG 0.115466 2.1:-15008675 None:intergenic
CTATCTCTCCTTATGTTTCT+TGG 0.167482 2.1:+15007005 MS.gene034406:CDS
ATGGAAGGCTATAGAGAAAT+TGG 0.218703 2.1:+15009281 MS.gene034406:CDS
CGTCTCGTCCTCCGGATAAT+AGG 0.219824 2.1:-15009459 None:intergenic
GTACAGTTAGCTTTAGATTC+TGG 0.256578 2.1:+15008391 MS.gene034406:CDS
ATAGATATTGATGTTCATTA+TGG 0.271623 2.1:+15008433 MS.gene034406:CDS
ATTGATGTTCATTATGGAAA+TGG 0.351697 2.1:+15008439 MS.gene034406:CDS
TATGCTTTGGTTAGGCCTCC+TGG 0.361621 2.1:+15008307 MS.gene034406:CDS
GGCTCAAATTTATGGATTGA+TGG 0.362518 2.1:-15008667 None:intergenic
TTCCAACACGTCTAAGAAAC+CGG 0.362595 2.1:-15006924 None:intergenic
GATATGATTGTCTTGGTTGT+AGG 0.362797 2.1:+15008691 MS.gene034406:CDS
CTGCTAGACCGGCGTTGTTA+AGG 0.377714 2.1:-15008369 None:intergenic
ATACCTTTGCCAAATGGAAC+TGG 0.380604 2.1:+15008604 MS.gene034406:CDS
TGGAAAAGTTGCTTATGCTT+TGG 0.394414 2.1:+15008294 MS.gene034406:CDS
CCTTATGTTTCTTGGCACCT+TGG 0.399647 2.1:+15007013 MS.gene034406:CDS
TTCTGCTACCGCATCTGTAT+TGG 0.406722 2.1:-15006810 None:intergenic
CCATTGTCCCCAGTTCCATT+TGG 0.421588 2.1:-15008613 None:intergenic
TGTTTACATGCAACACTTGA+AGG 0.421754 2.1:+15009395 MS.gene034406:CDS
CTAGGTGATGGAAAAGGTTA+TGG 0.423056 2.1:+15008568 MS.gene034406:CDS
GTGTGAAAAGAAAGGAGCTC+AGG 0.423266 2.1:-15007052 None:intergenic
GTTTCTCTTCATATGAATCA+TGG 0.423891 2.1:+15008502 MS.gene034406:CDS
ACAGAAAACGTCTCGTCCTC+CGG 0.432609 2.1:-15009467 None:intergenic
TCACCATGCTCAGCCTTCTC+AGG 0.438971 2.1:+15008330 MS.gene034406:CDS
TTGAACATACCTTTGCCAAA+TGG 0.438998 2.1:+15008598 MS.gene034406:CDS
TTCATATGAATCATGGATCA+TGG 0.439204 2.1:+15008509 MS.gene034406:CDS
TGTTAAGCATTGCCTTCCAT+TGG 0.445060 2.1:-15009258 None:intergenic
ACAACCAAGACAATCATATC+AGG 0.457583 2.1:-15008688 None:intergenic
TCGATGAAGCACTTGCTTGA+CGG 0.460456 2.1:+15008268 MS.gene034406:CDS
GTTAAGCATTGCCTTCCATT+GGG 0.466444 2.1:-15009257 None:intergenic
CTCAGAGTACATAAATGAAC+TGG 0.467324 2.1:+15008144 MS.gene034406:intron
CATTCTTGAACCCTGGATCA+TGG 0.469920 2.1:+15008209 MS.gene034406:CDS
AGATTCTGTTGCCTATTATC+CGG 0.472439 2.1:+15009448 MS.gene034406:CDS
GCTCAGCCTTCTCAGGCTGA+TGG 0.478600 2.1:+15008337 MS.gene034406:CDS
AGCTAACTGTACTGCTAGAC+CGG 0.480094 2.1:-15008380 None:intergenic
AGTGCAGCATCCCATGATCC+AGG 0.481293 2.1:-15008220 None:intergenic
CTCAGCCTTCTCAGGCTGAT+GGG 0.482724 2.1:+15008338 MS.gene034406:CDS
ATGCTGCACTTCTTGCCGCC+GGG 0.484367 2.1:+15008233 MS.gene034406:CDS
TAATAGATAAAATGCCTTTG+TGG 0.486516 2.1:+15009519 MS.gene034406:CDS
CAAGAAACATAAGGAGAGAT+AGG 0.488178 2.1:-15007004 None:intergenic
TGTGGCACATTCTTGAACCC+TGG 0.495198 2.1:+15008202 MS.gene034406:CDS
AAGTTGCTTATGCTTTGGTT+AGG 0.495823 2.1:+15008299 MS.gene034406:CDS
CCCCGGTTTCTTAGACGTGT+TGG 0.500802 2.1:+15006922 MS.gene034406:CDS
GAAGGCTGAGCATGGTGACC+AGG 0.501428 2.1:-15008325 None:intergenic
TGGAAGGCTATAGAGAAATT+GGG 0.506833 2.1:+15009282 MS.gene034406:CDS
AAGCACTTGCTTGACGGACA+TGG 0.517006 2.1:+15008274 MS.gene034406:CDS
TGGACGACTTCTTATTGTGC+AGG 0.517764 2.1:+15009340 MS.gene034406:CDS
ATTCTTGAACCCTGGATCAT+GGG 0.518742 2.1:+15008210 MS.gene034406:CDS
GATGCTGCACTTCTTGCCGC+CGG 0.519018 2.1:+15008232 MS.gene034406:CDS
CTGGTAAAAGCTGATAAAGA+AGG 0.519535 2.1:+15008163 MS.gene034406:CDS
TCATATGAATCATGGATCAT+GGG 0.522086 2.1:+15008510 MS.gene034406:CDS
GTGTTTCAGTTTGATCCCAA+TGG 0.522130 2.1:+15009242 MS.gene034406:intron
TACCTTTGCCAAATGGAACT+GGG 0.522843 2.1:+15008605 MS.gene034406:CDS
CTTCTTATTGTGCAGGAAGG+TGG 0.526523 2.1:+15009347 MS.gene034406:CDS
ATGATTCATATGAAGAGAAA+CGG 0.532665 2.1:-15008500 None:intergenic
CCAAGGTGCCAAGAAACATA+AGG 0.533396 2.1:-15007013 None:intergenic
TCCAACACGTCTAAGAAACC+GGG 0.536668 2.1:-15006923 None:intergenic
GGTAAAAGCTGATAAAGAAG+GGG 0.539956 2.1:+15008165 MS.gene034406:CDS
TGAGCCTGATATGATTGTCT+TGG 0.544113 2.1:+15008684 MS.gene034406:CDS
TGTATATGCCTTCAATGAGT+TGG 0.547153 2.1:+15008639 MS.gene034406:CDS
TGGAACAACCAACTCATTGA+AGG 0.547472 2.1:-15008647 None:intergenic
GGAATGCTCAAACACGATAC+CGG 0.549251 2.1:+15006872 MS.gene034406:CDS
TCCCCAGTTCCATTTGGCAA+AGG 0.550741 2.1:-15008607 None:intergenic
GAACCACTCTGCGGATGAGA+TGG 0.551133 2.1:-15008535 None:intergenic
CCAAATGGAACTGGGGACAA+TGG 0.552008 2.1:+15008613 MS.gene034406:CDS
GATGAGCTAGGTGATGGAAA+AGG 0.557420 2.1:+15008562 MS.gene034406:CDS
ATGGTCTCAATCCTTAAAAG+AGG 0.557846 2.1:+15006980 MS.gene034406:CDS
AGGCAATGCTTAACAATGGA+AGG 0.558257 2.1:+15009266 MS.gene034406:CDS
TGGTAAAAGCTGATAAAGAA+GGG 0.562108 2.1:+15008164 MS.gene034406:CDS
CATCGAAGACAGTGTAGTCC+CGG 0.564565 2.1:-15008251 None:intergenic
TATGGAAATGGAACAGCGGA+GGG 0.571295 2.1:+15008451 MS.gene034406:CDS
TTCAGTTTGATCCCAATGGA+AGG 0.573033 2.1:+15009246 MS.gene034406:intron
CTCAAACACGATACCGGCAA+TGG 0.574453 2.1:+15006878 MS.gene034406:CDS
AGTGGTTCTATTGATGAGCT+AGG 0.577656 2.1:+15008550 MS.gene034406:CDS
AACCAGGAGTGTGAAAAGAA+AGG 0.581611 2.1:-15007060 None:intergenic
GCAACAGAATCTTGTAGTAG+AGG 0.582073 2.1:-15009437 None:intergenic
GAATCTTGTAGTAGAGGCAA+TGG 0.582393 2.1:-15009431 None:intergenic
TCATATGAAGAGAAACGGTA+AGG 0.587254 2.1:-15008495 None:intergenic
TCAAGAATGTGCCACAACAA+AGG 0.592402 2.1:-15008195 None:intergenic
CAGTACCCATCAGCCTGAGA+AGG 0.593929 2.1:-15008343 None:intergenic
CGACTTCTTATTGTGCAGGA+AGG 0.594885 2.1:+15009344 MS.gene034406:CDS
TACTGTTTCCTTAACAACGC+CGG 0.598032 2.1:+15008361 MS.gene034406:CDS
CAGCCTGAGAAGGCTGAGCA+TGG 0.607738 2.1:-15008333 None:intergenic
TGGAAGGCAATGCTTAACAA+TGG 0.612899 2.1:+15009262 MS.gene034406:CDS
CATATGAATCATGGATCATG+GGG 0.613927 2.1:+15008511 MS.gene034406:CDS
TCTATTGATGAGCTAGGTGA+TGG 0.615901 2.1:+15008556 MS.gene034406:CDS
TGTGAAAAGAAAGGAGCTCA+GGG 0.616383 2.1:-15007051 None:intergenic
TTCTGTTGCCTATTATCCGG+AGG 0.618398 2.1:+15009451 MS.gene034406:CDS
GGCTGAGCATGGTGACCAGG+AGG 0.619749 2.1:-15008322 None:intergenic
AGTTAATCTGTTCTCCACAA+AGG 0.625888 2.1:-15009533 None:intergenic
ACCTTTGCCAAATGGAACTG+GGG 0.627049 2.1:+15008606 MS.gene034406:CDS
GGATGAGAGCATGTCGACCA+AGG 0.628418 2.1:-15007030 None:intergenic
GTGCAGCATCCCATGATCCA+GGG 0.634352 2.1:-15008219 None:intergenic
TTATGGAAATGGAACAGCGG+AGG 0.635964 2.1:+15008450 MS.gene034406:CDS
CTTGCGACGAGGCACAGTGA+TGG 0.646082 2.1:+15009320 MS.gene034406:CDS
TTTGACACAGGAATTGACCC+CGG 0.658755 2.1:+15006905 MS.gene034406:CDS
GTAAAAGCTGATAAAGAAGG+GGG 0.672379 2.1:+15008166 MS.gene034406:CDS
GGGCCATCTCATCCGCAGAG+TGG 0.701407 2.1:+15008532 MS.gene034406:CDS
TATGGCAACCAATACAGATG+CGG 0.714104 2.1:+15006802 None:intergenic
CCAACACGTCTAAGAAACCG+GGG 0.721257 2.1:-15006922 None:intergenic
TAGTTCATAGTCTTGCGACG+AGG 0.735316 2.1:+15009309 MS.gene034406:CDS
CGAAGACAGTGTAGTCCCGG+CGG 0.735641 2.1:-15008248 None:intergenic
TCATTATGGAAATGGAACAG+CGG 0.751642 2.1:+15008447 MS.gene034406:CDS
TCATCAATAGAACCACTCTG+CGG 0.759817 2.1:-15008544 None:intergenic
ATATGAATCATGGATCATGG+GGG 0.775931 2.1:+15008512 MS.gene034406:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTATTACATAATTTTTAA+TGG - chr2.1:15009507-15009526 None:intergenic 10.0%
!! AAATACTGAAATGTTACAAA+TGG - chr2.1:15007976-15007995 None:intergenic 20.0%
!! AATACTGAAATGTTACAAAT+GGG - chr2.1:15007975-15007994 None:intergenic 20.0%
!! AGTTAGTAGTTATTTAACAT+TGG + chr2.1:15007157-15007176 MS.gene034406:intron 20.0%
!! ATAGATATTGATGTTCATTA+TGG + chr2.1:15008433-15008452 MS.gene034406:CDS 20.0%
!! ATCTAATAAATAAACTAACC+AGG - chr2.1:15007079-15007098 None:intergenic 20.0%
!! TCTAAAAAGATACACTTTAA+AGG - chr2.1:15007366-15007385 None:intergenic 20.0%
!!! AACATTGGAAGTTAAATTTT+GGG + chr2.1:15007172-15007191 MS.gene034406:intron 20.0%
!!! GAACTTTTTAGAATTATCAT+AGG - chr2.1:15007892-15007911 None:intergenic 20.0%
!!! TAACATTGGAAGTTAAATTT+TGG + chr2.1:15007171-15007190 MS.gene034406:intron 20.0%
! ACCAACTTATAATGAGTTTA+TGG - chr2.1:15007785-15007804 None:intergenic 25.0%
! ACTATTAGAGAAAAGATAAG+AGG - chr2.1:15008044-15008063 None:intergenic 25.0%
! ATGATTCATATGAAGAGAAA+CGG - chr2.1:15008503-15008522 None:intergenic 25.0%
! ATTGATGTTCATTATGGAAA+TGG + chr2.1:15008439-15008458 MS.gene034406:CDS 25.0%
! CAATGATTTGAATTCAAGAT+AGG - chr2.1:15007274-15007293 None:intergenic 25.0%
! CCAACTTATAATGAGTTTAT+GGG - chr2.1:15007784-15007803 None:intergenic 25.0%
! CTATTAGAGAAAAGATAAGA+GGG - chr2.1:15008043-15008062 None:intergenic 25.0%
! GAAAAGTAATTCAATGCATA+TGG - chr2.1:15007486-15007505 None:intergenic 25.0%
! GAAATAGCACAAAAAAGAAA+AGG - chr2.1:15008751-15008770 None:intergenic 25.0%
! TAATAGATAAAATGCCTTTG+TGG + chr2.1:15009519-15009538 MS.gene034406:CDS 25.0%
! TATGTAAAAACTTCACATGT+TGG - chr2.1:15007868-15007887 None:intergenic 25.0%
! TCACTTAAATTGTAAAAGCA+TGG - chr2.1:15007755-15007774 None:intergenic 25.0%
!! AAAAGATACACTTTAAAGGT+TGG - chr2.1:15007362-15007381 None:intergenic 25.0%
!! CATAATTCAGAATTCAAGTT+CGG + chr2.1:15008005-15008024 MS.gene034406:intron 25.0%
!! TGTCAAATTGTTTGAAGTAT+AGG - chr2.1:15008092-15008111 None:intergenic 25.0%
!!! GAGTTTAATTTTAGTGAATG+TGG - chr2.1:15009217-15009236 None:intergenic 25.0%
AATAAGCTGAAAACAACTCA+TGG - chr2.1:15008947-15008966 None:intergenic 30.0%
ACATAAACGCTTATCAGATA+AGG - chr2.1:15009079-15009098 None:intergenic 30.0%
ATTCAATGCATATGGTTATC+AGG - chr2.1:15007478-15007497 None:intergenic 30.0%
CATAAACGCTTATCAGATAA+GGG - chr2.1:15009078-15009097 None:intergenic 30.0%
CATCACAAATCACAATGAAT+CGG - chr2.1:15007409-15007428 None:intergenic 30.0%
CCCATAAACTCATTATAAGT+TGG + chr2.1:15007781-15007800 MS.gene034406:intron 30.0%
GTTTCTCTTCATATGAATCA+TGG + chr2.1:15008502-15008521 MS.gene034406:CDS 30.0%
TCATATCAGGCTCAAATTTA+TGG - chr2.1:15008678-15008697 None:intergenic 30.0%
TCATATGAATCATGGATCAT+GGG + chr2.1:15008510-15008529 MS.gene034406:CDS 30.0%
TGGTAAAAGCTGATAAAGAA+GGG + chr2.1:15008164-15008183 MS.gene034406:CDS 30.0%
TGGTTTCATTGCATTTGTTT+AGG - chr2.1:15009163-15009182 None:intergenic 30.0%
TTCATATGAATCATGGATCA+TGG + chr2.1:15008509-15008528 MS.gene034406:CDS 30.0%
TTCTTATAGCTAAGATCAGT+TGG + chr2.1:15007513-15007532 MS.gene034406:intron 30.0%
! ACAGGATAATCAAACACTTT+TGG - chr2.1:15009183-15009202 None:intergenic 30.0%
! AGACTTGCATATGACTTTTA+TGG + chr2.1:15008817-15008836 MS.gene034406:intron 30.0%
! GACTTGCATATGACTTTTAT+GGG + chr2.1:15008818-15008837 MS.gene034406:intron 30.0%
! TGAACAAAATTGACGTTTTC+TGG + chr2.1:15006843-15006862 MS.gene034406:CDS 30.0%
! TTGTTTAGGTTTGCATATCA+TGG - chr2.1:15009149-15009168 None:intergenic 30.0%
! TTTGTGAAGATTGCATTTTC+TGG + chr2.1:15007195-15007214 MS.gene034406:intron 30.0%
!! GGTTTTATAAGCCAATTTGT+GGG + chr2.1:15007802-15007821 MS.gene034406:intron 30.0%
!!! TGGTTTTATAAGCCAATTTG+TGG + chr2.1:15007801-15007820 MS.gene034406:intron 30.0%
AAGTTGCTTATGCTTTGGTT+AGG + chr2.1:15008299-15008318 MS.gene034406:CDS 35.0%
ACAACCAAGACAATCATATC+AGG - chr2.1:15008691-15008710 None:intergenic 35.0%
AGATTCTGTTGCCTATTATC+CGG + chr2.1:15009448-15009467 MS.gene034406:CDS 35.0%
ATATGAATCATGGATCATGG+GGG + chr2.1:15008512-15008531 MS.gene034406:CDS 35.0%
ATGGAAGGCTATAGAGAAAT+TGG + chr2.1:15009281-15009300 MS.gene034406:CDS 35.0%
ATGGTCTCAATCCTTAAAAG+AGG + chr2.1:15006980-15006999 MS.gene034406:CDS 35.0%
ATTGTTCTCATAAGCTATCG+TGG - chr2.1:15008982-15009001 None:intergenic 35.0%
CAAGAAACATAAGGAGAGAT+AGG - chr2.1:15007007-15007026 None:intergenic 35.0%
CATATGAATCATGGATCATG+GGG + chr2.1:15008511-15008530 MS.gene034406:CDS 35.0%
CCATAAATTTATCACTTCCG+AGG + chr2.1:15007597-15007616 MS.gene034406:intron 35.0%
CCTCGGAAGTGATAAATTTA+TGG - chr2.1:15007600-15007619 None:intergenic 35.0%
CTATCTCTCCTTATGTTTCT+TGG + chr2.1:15007005-15007024 MS.gene034406:CDS 35.0%
CTCAGAGTACATAAATGAAC+TGG + chr2.1:15008144-15008163 MS.gene034406:intron 35.0%
CTGGTAAAAGCTGATAAAGA+AGG + chr2.1:15008163-15008182 MS.gene034406:CDS 35.0%
GATATGATTGTCTTGGTTGT+AGG + chr2.1:15008691-15008710 MS.gene034406:CDS 35.0%
GGTAAAAGCTGATAAAGAAG+GGG + chr2.1:15008165-15008184 MS.gene034406:CDS 35.0%
GTAAAAGCTGATAAAGAAGG+GGG + chr2.1:15008166-15008185 MS.gene034406:CDS 35.0%
TATCGTGCTGTAAACAACTT+GGG + chr2.1:15007552-15007571 MS.gene034406:intron 35.0%
TCATATGAAGAGAAACGGTA+AGG - chr2.1:15008498-15008517 None:intergenic 35.0%
TCATTATGGAAATGGAACAG+CGG + chr2.1:15008447-15008466 MS.gene034406:CDS 35.0%
TGGAAAAGTTGCTTATGCTT+TGG + chr2.1:15008294-15008313 MS.gene034406:CDS 35.0%
TGGAAGGCTATAGAGAAATT+GGG + chr2.1:15009282-15009301 MS.gene034406:CDS 35.0%
TGTATATGCCTTCAATGAGT+TGG + chr2.1:15008639-15008658 MS.gene034406:CDS 35.0%
TGTTCATAACACCCACAAAT+TGG - chr2.1:15007816-15007835 None:intergenic 35.0%
TGTTTACATGCAACACTTGA+AGG + chr2.1:15009395-15009414 MS.gene034406:CDS 35.0%
TTATCGTGCTGTAAACAACT+TGG + chr2.1:15007551-15007570 MS.gene034406:intron 35.0%
TTGAACATACCTTTGCCAAA+TGG + chr2.1:15008598-15008617 MS.gene034406:CDS 35.0%
TTGAACTTCTAATGACTGCA+CGG + chr2.1:15007644-15007663 MS.gene034406:intron 35.0%
TTGAAGTATAGGCTATAGCA+GGG - chr2.1:15008081-15008100 None:intergenic 35.0%
! AACGTCAATTTTGTTCACAC+TGG - chr2.1:15006840-15006859 None:intergenic 35.0%
! GCACATAATTGAGCACTTTT+CGG + chr2.1:15007696-15007715 MS.gene034406:intron 35.0%
! GGCTCAAATTTATGGATTGA+TGG - chr2.1:15008670-15008689 None:intergenic 35.0%
! TGCATATGACTTTTATGGGA+TGG + chr2.1:15008822-15008841 MS.gene034406:intron 35.0%
! TTTGAAGTATAGGCTATAGC+AGG - chr2.1:15008082-15008101 None:intergenic 35.0%
!! ACACTTTAAAGGTTGGTGAA+TGG - chr2.1:15007355-15007374 None:intergenic 35.0%
!! GTACAGTTAGCTTTAGATTC+TGG + chr2.1:15008391-15008410 MS.gene034406:CDS 35.0%
!!! AATGTGGCTTTGTTTTACAC+AGG - chr2.1:15009201-15009220 None:intergenic 35.0%
AAGCTATCGTGGAGAGTTTA+TGG - chr2.1:15008971-15008990 None:intergenic 40.0%
AATTGCTCCAGCTGAATTCA+AGG - chr2.1:15007926-15007945 None:intergenic 40.0%
AGGCAATGCTTAACAATGGA+AGG + chr2.1:15009266-15009285 MS.gene034406:CDS 40.0%
ATACCTTTGCCAAATGGAAC+TGG + chr2.1:15008604-15008623 MS.gene034406:CDS 40.0%
ATTCTTGAACCCTGGATCAT+GGG + chr2.1:15008210-15008229 MS.gene034406:CDS 40.0%
CAGTATTCCTTGAATTCAGC+TGG + chr2.1:15007916-15007935 MS.gene034406:intron 40.0%
GAATCTTGTAGTAGAGGCAA+TGG - chr2.1:15009434-15009453 None:intergenic 40.0%
GCAACAGAATCTTGTAGTAG+AGG - chr2.1:15009440-15009459 None:intergenic 40.0%
GTGTTTCAGTTTGATCCCAA+TGG + chr2.1:15009242-15009261 MS.gene034406:intron 40.0%
TACCTTTGCCAAATGGAACT+GGG + chr2.1:15008605-15008624 MS.gene034406:CDS 40.0%
TACTGTTTCCTTAACAACGC+CGG + chr2.1:15008361-15008380 MS.gene034406:CDS 40.0%
TCAAGAATGTGCCACAACAA+AGG - chr2.1:15008198-15008217 None:intergenic 40.0%
TCATCAATAGAACCACTCTG+CGG - chr2.1:15008547-15008566 None:intergenic 40.0%
TCTATTGATGAGCTAGGTGA+TGG + chr2.1:15008556-15008575 MS.gene034406:CDS 40.0%
TGAGCCTGATATGATTGTCT+TGG + chr2.1:15008684-15008703 MS.gene034406:CDS 40.0%
TGGAACAACCAACTCATTGA+AGG - chr2.1:15008650-15008669 None:intergenic 40.0%
TGGAAGGCAATGCTTAACAA+TGG + chr2.1:15009262-15009281 MS.gene034406:CDS 40.0%
TGTGAAAAGAAAGGAGCTCA+GGG - chr2.1:15007054-15007073 None:intergenic 40.0%
TGTGTCAAAAACTCCATTGC+CGG - chr2.1:15006894-15006913 None:intergenic 40.0%
TTCAGTTTGATCCCAATGGA+AGG + chr2.1:15009246-15009265 MS.gene034406:intron 40.0%
TTCCAACACGTCTAAGAAAC+CGG - chr2.1:15006927-15006946 None:intergenic 40.0%
! AACCAGGAGTGTGAAAAGAA+AGG - chr2.1:15007063-15007082 None:intergenic 40.0%
! AGTGGTTCTATTGATGAGCT+AGG + chr2.1:15008550-15008569 MS.gene034406:CDS 40.0%
! GAGAGATAGGACCTCTTTTA+AGG - chr2.1:15006994-15007013 None:intergenic 40.0%
! GTTAAGCATTGCCTTCCATT+GGG - chr2.1:15009260-15009279 None:intergenic 40.0%
! TGGGTGTTATGAACATGTCA+TGG + chr2.1:15007821-15007840 MS.gene034406:intron 40.0%
! TGTTAAGCATTGCCTTCCAT+TGG - chr2.1:15009261-15009280 None:intergenic 40.0%
!! ATTGACGTTTTCTGGCATGA+AGG + chr2.1:15006851-15006870 MS.gene034406:CDS 40.0%
!! CTAGGTGATGGAAAAGGTTA+TGG + chr2.1:15008568-15008587 MS.gene034406:CDS 40.0%
!! GACTTTTATGGGATGGACTT+AGG + chr2.1:15008829-15008848 MS.gene034406:intron 40.0%
AACTTCTAATGACTGCACGG+TGG + chr2.1:15007647-15007666 MS.gene034406:intron 45.0%
ACCTTTGCCAAATGGAACTG+GGG + chr2.1:15008606-15008625 MS.gene034406:CDS 45.0%
ACTTCTAATGACTGCACGGT+GGG + chr2.1:15007648-15007667 MS.gene034406:intron 45.0%
AGCTAACTGTACTGCTAGAC+CGG - chr2.1:15008383-15008402 None:intergenic 45.0%
CATTCTTGAACCCTGGATCA+TGG + chr2.1:15008209-15008228 MS.gene034406:CDS 45.0%
CCTTATGTTTCTTGGCACCT+TGG + chr2.1:15007013-15007032 MS.gene034406:CDS 45.0%
CGACTTCTTATTGTGCAGGA+AGG + chr2.1:15009344-15009363 MS.gene034406:CDS 45.0%
CGCAGACAGAGTCAAAAACA+TGG + chr2.1:15006961-15006980 MS.gene034406:CDS 45.0%
CTTCTTATTGTGCAGGAAGG+TGG + chr2.1:15009347-15009366 MS.gene034406:CDS 45.0%
GGAATGCTCAAACACGATAC+CGG + chr2.1:15006872-15006891 MS.gene034406:CDS 45.0%
GGTGTGTATTACGCTCTGTT+TGG - chr2.1:15009128-15009147 None:intergenic 45.0%
GTGTGAAAAGAAAGGAGCTC+AGG - chr2.1:15007055-15007074 None:intergenic 45.0%
TATGGAAATGGAACAGCGGA+GGG + chr2.1:15008451-15008470 MS.gene034406:CDS 45.0%
TCCAACACGTCTAAGAAACC+GGG - chr2.1:15006926-15006945 None:intergenic 45.0%
TGGACGACTTCTTATTGTGC+AGG + chr2.1:15009340-15009359 MS.gene034406:CDS 45.0%
TTATGGAAATGGAACAGCGG+AGG + chr2.1:15008450-15008469 MS.gene034406:CDS 45.0%
TTCTGCTACCGCATCTGTAT+TGG - chr2.1:15006813-15006832 None:intergenic 45.0%
TTCTGTTGCCTATTATCCGG+AGG + chr2.1:15009451-15009470 MS.gene034406:CDS 45.0%
TTTGACACAGGAATTGACCC+CGG + chr2.1:15006905-15006924 MS.gene034406:CDS 45.0%
! CCAAGGTGCCAAGAAACATA+AGG - chr2.1:15007016-15007035 None:intergenic 45.0%
! CTCCTTTCTTTTCACACTCC+TGG + chr2.1:15007058-15007077 MS.gene034406:CDS 45.0%
! GGATGGACTTAGGACATGTT+TGG + chr2.1:15008839-15008858 MS.gene034406:intron 45.0%
! GGCAATGGAGTTTTTGACAC+AGG + chr2.1:15006893-15006912 MS.gene034406:CDS 45.0%
! TAGTTCATAGTCTTGCGACG+AGG + chr2.1:15009309-15009328 MS.gene034406:CDS 45.0%
! TCGATGAAGCACTTGCTTGA+CGG + chr2.1:15008268-15008287 MS.gene034406:CDS 45.0%
! TTGACTCTGTCTGCGTTTTC+AGG - chr2.1:15006956-15006975 None:intergenic 45.0%
!! GATGAGCTAGGTGATGGAAA+AGG + chr2.1:15008562-15008581 MS.gene034406:CDS 45.0%
ACAGAAAACGTCTCGTCCTC+CGG - chr2.1:15009470-15009489 None:intergenic 50.0%
ACTTCCGAGGCACAGTAGAA+GGG + chr2.1:15007610-15007629 MS.gene034406:intron 50.0%
CATCGAAGACAGTGTAGTCC+CGG - chr2.1:15008254-15008273 None:intergenic 50.0%
CCAAATGGAACTGGGGACAA+TGG + chr2.1:15008613-15008632 MS.gene034406:CDS 50.0%
CCAACACGTCTAAGAAACCG+GGG - chr2.1:15006925-15006944 None:intergenic 50.0%
CCATTGTCCCCAGTTCCATT+TGG - chr2.1:15008616-15008635 None:intergenic 50.0%
CTCAAACACGATACCGGCAA+TGG + chr2.1:15006878-15006897 MS.gene034406:CDS 50.0%
CTTCTAATGACTGCACGGTG+GGG + chr2.1:15007649-15007668 MS.gene034406:intron 50.0%
GGGGGAAAGATCCTTTGTTG+TGG + chr2.1:15008184-15008203 MS.gene034406:CDS 50.0%
TATGCTTTGGTTAGGCCTCC+TGG + chr2.1:15008307-15008326 MS.gene034406:CDS 50.0%
TCCCCAGTTCCATTTGGCAA+AGG - chr2.1:15008610-15008629 None:intergenic 50.0%
TGTGGCACATTCTTGAACCC+TGG + chr2.1:15008202-15008221 MS.gene034406:CDS 50.0%
TTCTAATGACTGCACGGTGG+GGG + chr2.1:15007650-15007669 MS.gene034406:intron 50.0%
! AAGCACTTGCTTGACGGACA+TGG + chr2.1:15008274-15008293 MS.gene034406:CDS 50.0%
AGTGCAGCATCCCATGATCC+AGG - chr2.1:15008223-15008242 None:intergenic 55.0%
CACTTCCGAGGCACAGTAGA+AGG + chr2.1:15007609-15007628 MS.gene034406:intron 55.0%
CAGTACCCATCAGCCTGAGA+AGG - chr2.1:15008346-15008365 None:intergenic 55.0%
CCCCGGTTTCTTAGACGTGT+TGG + chr2.1:15006922-15006941 MS.gene034406:CDS 55.0%
CGTCTCGTCCTCCGGATAAT+AGG - chr2.1:15009462-15009481 None:intergenic 55.0%
CTCAGCCTTCTCAGGCTGAT+GGG + chr2.1:15008338-15008357 MS.gene034406:CDS 55.0%
CTGCTAGACCGGCGTTGTTA+AGG - chr2.1:15008372-15008391 None:intergenic 55.0%
GAACCACTCTGCGGATGAGA+TGG - chr2.1:15008538-15008557 None:intergenic 55.0%
GCATCCCTTCTACTGTGCCT+CGG - chr2.1:15007617-15007636 None:intergenic 55.0%
GTGCAGCATCCCATGATCCA+GGG - chr2.1:15008222-15008241 None:intergenic 55.0%
TCACCATGCTCAGCCTTCTC+AGG + chr2.1:15008330-15008349 MS.gene034406:CDS 55.0%
! GGATGAGAGCATGTCGACCA+AGG - chr2.1:15007033-15007052 None:intergenic 55.0%
ATGCTGCACTTCTTGCCGCC+GGG + chr2.1:15008233-15008252 MS.gene034406:CDS 60.0%
CAGCCTGAGAAGGCTGAGCA+TGG - chr2.1:15008336-15008355 None:intergenic 60.0%
CGAAGACAGTGTAGTCCCGG+CGG - chr2.1:15008251-15008270 None:intergenic 60.0%
CTTGCGACGAGGCACAGTGA+TGG + chr2.1:15009320-15009339 MS.gene034406:CDS 60.0%
GAAGGCTGAGCATGGTGACC+AGG - chr2.1:15008328-15008347 None:intergenic 60.0%
GATGCTGCACTTCTTGCCGC+CGG + chr2.1:15008232-15008251 MS.gene034406:CDS 60.0%
GCTCAGCCTTCTCAGGCTGA+TGG + chr2.1:15008337-15008356 MS.gene034406:CDS 60.0%
GCACGGTGGGGGTTACTCAC+TGG + chr2.1:15007661-15007680 MS.gene034406:intron 65.0%
GGCTGAGCATGGTGACCAGG+AGG - chr2.1:15008325-15008344 None:intergenic 65.0%
GGGCCATCTCATCCGCAGAG+TGG + chr2.1:15008532-15008551 MS.gene034406:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 15006803 15009553 15006803 ID=MS.gene034406
chr2.1 mRNA 15006803 15009553 15006803 ID=MS.gene034406.t1;Parent=MS.gene034406
chr2.1 exon 15006803 15007079 15006803 ID=MS.gene034406.t1.exon1;Parent=MS.gene034406.t1
chr2.1 CDS 15006803 15007079 15006803 ID=cds.MS.gene034406.t1;Parent=MS.gene034406.t1
chr2.1 exon 15008149 15008729 15008149 ID=MS.gene034406.t1.exon2;Parent=MS.gene034406.t1
chr2.1 CDS 15008149 15008729 15008149 ID=cds.MS.gene034406.t1;Parent=MS.gene034406.t1
chr2.1 exon 15009251 15009553 15009251 ID=MS.gene034406.t1.exon3;Parent=MS.gene034406.t1
chr2.1 CDS 15009251 15009553 15009251 ID=cds.MS.gene034406.t1;Parent=MS.gene034406.t1
Gene Sequence

>MS.gene034406

ATGGCAACCAATACAGATGCGGTAGCAGAATCTTCCAGTGTGAACAAAATTGACGTTTTCTGGCATGAAGGAATGCTCAAACACGATACCGGCAATGGAGTTTTTGACACAGGAATTGACCCCGGTTTCTTAGACGTGTTGGAAAAACATCCTGAAAACGCAGACAGAGTCAAAAACATGGTCTCAATCCTTAAAAGAGGTCCTATCTCTCCTTATGTTTCTTGGCACCTTGGTCGACATGCTCTCATCCCTGAGCTCCTTTCTTTTCACACTCCTGGTTAGTTTATTTATTAGATAAAAATTTATGCTTTGCATGCAAAGCTGAAACTTTATAGATGTGAGTTCAGTCACTTTAGTTAGTAGTTATTTAACATTGGAAGTTAAATTTTGGGTTTGTGAAGATTGCATTTTCTGGAATAGATATTTTGTGCACACTGTATTGATGTACAGTATAATTCAGACATGAATCCTATCTTGAATTCAAATCATTGCGATAGTTTAATGTGCTGTGTGCAGCATATTATCTTATGATACATGCGAATTGCATCTCCATTCACCAACCTTTAAAGTGTATCTTTTTAGACATGAATCTCATCTTGAATTCCGATTCATTGTGATTTGTGATGAATCTTGATTCACAAAAAAGATCTTGCAACACTATTTCAATCTCGACCTGATAACCATATGCATTGAATTACTTTTCTAGATCATTCTTATAGCTAAGATCAGTTGGCAGTTCGTTAGTTTGTTATCGTGCTGTAAACAACTTGGGCAATGTTTAGATCTGCAGTGCACCATAAATTTATCACTTCCGAGGCACAGTAGAAGGGATGCTATACATTTGAACTTCTAATGACTGCACGGTGGGGGTTACTCACTGGTCTTACAAACATGCACATAATTGAGCACTTTTCGGTAAACATTTTTCATATAAGAGCTTATAGATACACCATGCTTTTACAATTTAAGTGAAAGTGTCCCATAAACTCATTATAAGTTGGTTTTATAAGCCAATTTGTGGGTGTTATGAACATGTCATGGACTATTTTTCATAAATTCTTTCCAACATGTGAAGTTTTTACATATCCTATGATAATTCTAAAAAGTTCTTTTCAGTATTCCTTGAATTCAGCTGGAGCAATTCTGCTACAAACACACTATATATATAACCCATTTGTAACATTTCAGTATTTTTGAGAAATCATAATTCAGAATTCAAGTTCGGTTTTCACAATTTCCCTCTTATCTTTTCTCTAATAGTCTCTCATTTTCTTACCCTGCTATAGCCTATACTTCAAACAATTTGACACAGTGAATGATATAATTTCAATGCTGTAATTTCTCAGAGTACATAAATGAACTGGTAAAAGCTGATAAAGAAGGGGGAAAGATCCTTTGTTGTGGCACATTCTTGAACCCTGGATCATGGGATGCTGCACTTCTTGCCGCCGGGACTACACTGTCTTCGATGAAGCACTTGCTTGACGGACATGGAAAAGTTGCTTATGCTTTGGTTAGGCCTCCTGGTCACCATGCTCAGCCTTCTCAGGCTGATGGGTACTGTTTCCTTAACAACGCCGGTCTAGCAGTACAGTTAGCTTTAGATTCTGGATGTAAGAAAGTTGCAGTTATAGATATTGATGTTCATTATGGAAATGGAACAGCGGAGGGATTTTATTCATCTGATAAAGTCCTTACCGTTTCTCTTCATATGAATCATGGATCATGGGGGCCATCTCATCCGCAGAGTGGTTCTATTGATGAGCTAGGTGATGGAAAAGGTTATGGTTATAACTTGAACATACCTTTGCCAAATGGAACTGGGGACAATGGATATGTATATGCCTTCAATGAGTTGGTTGTTCCATCAATCCATAAATTTGAGCCTGATATGATTGTCTTGGTTGTAGGACAAGACTCGAGTGCAGTAAGTTATTCTATTTATCCTTTTCTTTTTTGTGCTATTTCAATTTATAGTTTGATTGTGATTAGCTTTTTATTGACAAGTTTTTGTAGACTTGCATATGACTTTTATGGGATGGACTTAGGACATGTTTGGATTAACTTATTTGAGTTTATCTACTGACATAAGCACTTGTGAGACTATTTGAGAGAGCTTATGAAAACAGCTTATTGCATGTCCATGAGTTGTTTTCAGCTTATTTCCATAAACTCTCCACGATAGCTTATGAGAACAATTTATTACTTATATGACAACAATTCGACTTTATTTTATCTTTTGTTATAGAAATAGAAACAACTTATACATAAGCCCTTATCTGATAAGCGTTTATGTTATAAACGCTTAACTATATTGTTTATCCAAACAGAGCGTAATACACACCATGATATGCAAACCTAAACAAATGCAATGAAACCAAAAGTGTTTGATTATCCTGTGTAAAACAAAGCCACATTCACTAAAATTAAACTCTTCATGTGTTTCAGTTTGATCCCAATGGAAGGCAATGCTTAACAATGGAAGGCTATAGAGAAATTGGGCGTATAGTTCATAGTCTTGCGACGAGGCACAGTGATGGACGACTTCTTATTGTGCAGGAAGGTGGATATCATGTAACATATTCAGCATATTGTTTACATGCAACACTTGAAGGTGTTCTCAATCTACCATTGCCTCTACTACAAGATTCTGTTGCCTATTATCCGGAGGACGAGACGTTTTCTGTCAAAGTTATAGACGCCATTAAAAATTATGTAATAGATAAAATGCCTTTGTGGAGAACAGATTAA
Protein sequence

>MS.gene034406.t1

MATNTDAVAESSSVNKIDVFWHEGMLKHDTGNGVFDTGIDPGFLDVLEKHPENADRVKNMVSILKRGPISPYVSWHLGRHALIPELLSFHTPEYINELVKADKEGGKILCCGTFLNPGSWDAALLAAGTTLSSMKHLLDGHGKVAYALVRPPGHHAQPSQADGYCFLNNAGLAVQLALDSGCKKVAVIDIDVHYGNGTAEGFYSSDKVLTVSLHMNHGSWGPSHPQSGSIDELGDGKGYGYNLNIPLPNGTGDNGYVYAFNELVVPSIHKFEPDMIVLVVGQDSSAFDPNGRQCLTMEGYREIGRIVHSLATRHSDGRLLIVQEGGYHVTYSAYCLHATLEGVLNLPLPLLQDSVAYYPEDETFSVKVIDAIKNYVIDKMPLWRTD