Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034805.t1 | XP_013467905.1 | 98 | 868 | 17 | 0 | 1 | 868 | 1 | 868 | 0.00E+00 | 1579.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034805.t1 | F4IYF8 | 55.1 | 891 | 363 | 13 | 2 | 866 | 4 | 883 | 2.8e-253 | 876.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034805.t1 | A0A072VJI1 | 98.0 | 868 | 17 | 0 | 1 | 868 | 1 | 868 | 0.0e+00 | 1579.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene82886 | MS.gene034805 | PPI |
MS.gene027585 | MS.gene034805 | PPI |
MS.gene43889 | MS.gene034805 | PPI |
MS.gene026998 | MS.gene034805 | PPI |
MS.gene45075 | MS.gene034805 | PPI |
MS.gene034805 | MS.gene35246 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034805.t1 | MTR_1g057860 | 98.041 | 868 | 17 | 0 | 1 | 868 | 1 | 868 | 0.0 | 1734 |
MS.gene034805.t1 | MTR_1g022010 | 70.244 | 205 | 31 | 3 | 582 | 780 | 49 | 229 | 2.68e-86 | 278 |
MS.gene034805.t1 | MTR_4g129940 | 78.472 | 144 | 29 | 1 | 428 | 569 | 40 | 183 | 4.23e-72 | 235 |
MS.gene034805.t1 | MTR_1g057880 | 79.577 | 142 | 8 | 1 | 626 | 767 | 1 | 121 | 2.12e-67 | 220 |
MS.gene034805.t1 | MTR_5g091860 | 89.655 | 116 | 12 | 0 | 627 | 742 | 13 | 128 | 3.69e-63 | 210 |
MS.gene034805.t1 | MTR_7g101940 | 27.972 | 429 | 282 | 11 | 434 | 853 | 87 | 497 | 1.04e-41 | 160 |
MS.gene034805.t1 | MTR_7g012030 | 69.318 | 88 | 27 | 0 | 445 | 532 | 1 | 88 | 2.81e-33 | 127 |
MS.gene034805.t1 | MTR_6g038890 | 62.500 | 88 | 28 | 2 | 445 | 531 | 1 | 84 | 1.59e-27 | 111 |
MS.gene034805.t1 | MTR_6g046330 | 67.105 | 76 | 25 | 0 | 457 | 532 | 3 | 78 | 1.49e-25 | 108 |
MS.gene034805.t1 | MTR_5g091840 | 53.226 | 124 | 34 | 3 | 768 | 868 | 1 | 123 | 1.71e-25 | 102 |
MS.gene034805.t1 | MTR_4g067160 | 26.696 | 457 | 274 | 21 | 439 | 862 | 788 | 1216 | 2.92e-23 | 107 |
MS.gene034805.t1 | MTR_1g088900 | 50.667 | 75 | 15 | 1 | 496 | 570 | 95 | 147 | 2.16e-13 | 71.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034805.t1 | AT3G02760 | 56.678 | 891 | 349 | 12 | 2 | 866 | 4 | 883 | 0.0 | 909 |
MS.gene034805.t1 | AT3G02760 | 56.678 | 891 | 349 | 12 | 2 | 866 | 4 | 883 | 0.0 | 909 |
MS.gene034805.t1 | AT3G46100 | 30.093 | 432 | 269 | 13 | 434 | 853 | 72 | 482 | 7.99e-45 | 169 |
MS.gene034805.t1 | AT3G59410 | 25.814 | 430 | 261 | 16 | 447 | 840 | 797 | 1204 | 2.42e-28 | 123 |
MS.gene034805.t1 | AT3G59410 | 25.814 | 430 | 261 | 16 | 447 | 840 | 820 | 1227 | 2.53e-28 | 123 |
MS.gene034805.t1 | AT3G59410 | 25.814 | 430 | 261 | 16 | 447 | 840 | 796 | 1203 | 2.54e-28 | 123 |
MS.gene034805.t1 | AT3G59410 | 25.814 | 430 | 261 | 16 | 447 | 840 | 796 | 1203 | 2.54e-28 | 123 |
MS.gene034805.t1 | AT3G59410 | 25.814 | 430 | 261 | 16 | 447 | 840 | 796 | 1203 | 2.85e-28 | 123 |
MS.gene034805.t1 | AT5G03406 | 32.620 | 187 | 119 | 4 | 434 | 614 | 72 | 257 | 1.29e-20 | 93.2 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
8685 | gene | 122304 | 132338 | 122304 | ID=MS.gene034805 |
8685 | mRNA | 122304 | 132338 | 122304 | ID=MS.gene034805.t1;Parent=MS.gene034805 |
8685 | exon | 131034 | 132338 | 131034 | ID=MS.gene034805.t1.exon1;Parent=MS.gene034805.t1 |
8685 | CDS | 131034 | 132338 | 131034 | ID=cds.MS.gene034805.t1;Parent=MS.gene034805.t1 |
8685 | exon | 130194 | 130373 | 130194 | ID=MS.gene034805.t1.exon2;Parent=MS.gene034805.t1 |
8685 | CDS | 130194 | 130373 | 130194 | ID=cds.MS.gene034805.t1;Parent=MS.gene034805.t1 |
8685 | exon | 129750 | 130007 | 129750 | ID=MS.gene034805.t1.exon3;Parent=MS.gene034805.t1 |
8685 | CDS | 129750 | 130007 | 129750 | ID=cds.MS.gene034805.t1;Parent=MS.gene034805.t1 |
8685 | exon | 128891 | 129025 | 128891 | ID=MS.gene034805.t1.exon4;Parent=MS.gene034805.t1 |
8685 | CDS | 128891 | 129025 | 128891 | ID=cds.MS.gene034805.t1;Parent=MS.gene034805.t1 |
8685 | exon | 127759 | 128040 | 127759 | ID=MS.gene034805.t1.exon5;Parent=MS.gene034805.t1 |
8685 | CDS | 127759 | 128040 | 127759 | ID=cds.MS.gene034805.t1;Parent=MS.gene034805.t1 |
8685 | exon | 123060 | 123200 | 123060 | ID=MS.gene034805.t1.exon6;Parent=MS.gene034805.t1 |
8685 | CDS | 123060 | 123200 | 123060 | ID=cds.MS.gene034805.t1;Parent=MS.gene034805.t1 |
8685 | exon | 122304 | 122609 | 122304 | ID=MS.gene034805.t1.exon7;Parent=MS.gene034805.t1 |
8685 | CDS | 122304 | 122609 | 122304 | ID=cds.MS.gene034805.t1;Parent=MS.gene034805.t1 |
Gene Sequence |
Protein sequence |