Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45075.t1 | XP_003613276.1 | 97.6 | 676 | 16 | 0 | 1 | 676 | 36 | 711 | 0.00E+00 | 1366.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45075.t1 | O04630 | 76.3 | 675 | 160 | 0 | 1 | 675 | 34 | 708 | 0.0e+00 | 1089.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45075.t1 | G7K2Q8 | 97.6 | 676 | 16 | 0 | 1 | 676 | 36 | 711 | 0.0e+00 | 1366.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene45075 | MS.gene77474 | PPI |
| MS.gene055573 | MS.gene45075 | PPI |
| MS.gene45075 | MS.gene26939 | PPI |
| MS.gene45075 | MS.gene064832 | PPI |
| MS.gene45075 | MS.gene69330 | PPI |
| MS.gene44095 | MS.gene45075 | PPI |
| MS.gene45075 | MS.gene005227 | PPI |
| MS.gene45075 | MS.gene52774 | PPI |
| MS.gene45075 | MS.gene27335 | PPI |
| MS.gene45075 | MS.gene41088 | PPI |
| MS.gene45075 | MS.gene034805 | PPI |
| MS.gene45075 | MS.gene056036 | PPI |
| MS.gene45075 | MS.gene014350 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45075.t1 | MTR_5g034820 | 97.633 | 676 | 16 | 0 | 1 | 676 | 36 | 711 | 0.0 | 1381 |
| MS.gene45075.t1 | MTR_3g083180 | 39.646 | 565 | 325 | 12 | 114 | 669 | 86 | 643 | 1.28e-134 | 410 |
| MS.gene45075.t1 | MTR_3g077340 | 68.950 | 219 | 52 | 2 | 115 | 333 | 35 | 237 | 3.56e-98 | 301 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45075.t1 | AT5G26830 | 76.296 | 675 | 160 | 0 | 1 | 675 | 34 | 708 | 0.0 | 1088 |
| MS.gene45075.t1 | AT2G04842 | 38.772 | 570 | 333 | 13 | 114 | 674 | 84 | 646 | 2.69e-132 | 404 |
| MS.gene45075.t1 | AT2G04842 | 38.772 | 570 | 333 | 13 | 114 | 674 | 84 | 646 | 2.69e-132 | 404 |
| MS.gene45075.t1 | AT1G17960 | 64.236 | 288 | 98 | 2 | 386 | 669 | 92 | 378 | 8.80e-131 | 391 |
| MS.gene45075.t1 | AT1G17960 | 62.637 | 91 | 33 | 1 | 5 | 94 | 6 | 96 | 1.28e-28 | 119 |
| MS.gene45075.t1 | AT1G17960 | 64.437 | 284 | 96 | 2 | 390 | 669 | 169 | 451 | 7.45e-128 | 386 |
| MS.gene45075.t1 | AT1G17960 | 65.644 | 163 | 54 | 2 | 5 | 165 | 6 | 168 | 1.41e-67 | 229 |
| MS.gene45075.t1 | AT1G18130 | 67.123 | 146 | 44 | 1 | 524 | 669 | 17 | 158 | 1.32e-62 | 206 |
Find 168 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCTTATTTCAGGAATATT+TGG | 0.091414 | 5.3:+23799343 | MS.gene45075:intron |
| CATAACAGGTCTCTCAATTT+TGG | 0.134497 | 5.3:-23802922 | None:intergenic |
| GAAAGTTTACAAAGAGTTTA+TGG | 0.138256 | 5.3:+23797964 | MS.gene45075:CDS |
| GATCATGTCTATAAAATATT+TGG | 0.175700 | 5.3:+23801537 | MS.gene45075:CDS |
| GCTCTTATTGCTAAGGTTAA+TGG | 0.194013 | 5.3:+23795003 | MS.gene45075:CDS |
| TCCTGACAATAAGAGTTTAA+AGG | 0.208364 | 5.3:+23797996 | MS.gene45075:CDS |
| CATTCTAGTGCTCATATTCT+TGG | 0.208832 | 5.3:+23795117 | MS.gene45075:CDS |
| GCTAGGTAGGATTCGTCTTT+GGG | 0.215030 | 5.3:-23794793 | None:intergenic |
| GGCTAGGTAGGATTCGTCTT+TGG | 0.223839 | 5.3:-23794794 | None:intergenic |
| GCGTGAGATTTCGAAGAATT+TGG | 0.270329 | 5.3:+23794972 | MS.gene45075:CDS |
| CTAAGGTTAATGGCGTTCTT+TGG | 0.274825 | 5.3:+23795013 | MS.gene45075:CDS |
| CAAAGATTTGGATGCGCTTT+GGG | 0.276393 | 5.3:-23794825 | None:intergenic |
| TAGAGCACTACAAGGGTAAA+TGG | 0.292473 | 5.3:+23802994 | MS.gene45075:CDS |
| CTTGAAGCGCCTCAAAGATT+TGG | 0.307539 | 5.3:-23794837 | None:intergenic |
| TCTCTCTCCCGATCCGATTA+AGG | 0.312026 | 5.3:+23794885 | MS.gene45075:CDS |
| AAGGAAGCTTTGGATGAGTT+TGG | 0.338554 | 5.3:+23802545 | MS.gene45075:CDS |
| GCTTTGACAAAGGATGTATT+AGG | 0.342264 | 5.3:-23797781 | None:intergenic |
| AGCTTCTCTCAAGGAAGCTT+TGG | 0.345335 | 5.3:+23802535 | MS.gene45075:CDS |
| TCCAGGCTTCGTCAGCATAT+TGG | 0.363753 | 5.3:+23797923 | MS.gene45075:intron |
| CCCTTCCTTCACGTTTCCAT+CGG | 0.363807 | 5.3:-23794917 | None:intergenic |
| TCCAGGTGAGCGTACGAGTC+AGG | 0.368214 | 5.3:+23804987 | MS.gene45075:intron |
| TCAAAGATTTGGATGCGCTT+TGG | 0.375605 | 5.3:-23794826 | None:intergenic |
| ATGGCTCTGTGTATCATAAC+AGG | 0.378781 | 5.3:-23802936 | None:intergenic |
| ATGATACACAGAGCCATTCT+AGG | 0.381073 | 5.3:+23802942 | MS.gene45075:CDS |
| TCGGGAAGTGTAACCTTAAT+CGG | 0.383312 | 5.3:-23794898 | None:intergenic |
| ACAAGGGTAAATGGCCCTTC+TGG | 0.384970 | 5.3:+23803003 | MS.gene45075:CDS |
| ACCTTTAAACTCTTATTGTC+AGG | 0.387286 | 5.3:-23797997 | None:intergenic |
| CAAAGCAATTGCATGTTTGA+AGG | 0.391968 | 5.3:+23797798 | MS.gene45075:CDS |
| TAAGGTTAATGGCGTTCTTT+GGG | 0.392390 | 5.3:+23795014 | MS.gene45075:CDS |
| GATACACTGATGTCTATCTT+TGG | 0.399463 | 5.3:-23802717 | None:intergenic |
| TAGTCTCTTGAGACGGAGTA+TGG | 0.405636 | 5.3:+23795976 | MS.gene45075:intron |
| TACAACTACATCTTGGTTGT+TGG | 0.416034 | 5.3:+23804051 | MS.gene45075:CDS |
| CTTGTAGTGCTCTAAAAGTA+TGG | 0.424295 | 5.3:-23802985 | None:intergenic |
| TTTATGTTAGCCCGGGAAGC+TGG | 0.427800 | 5.3:+23799519 | MS.gene45075:intron |
| CATTGAAGTGACACGTGATC+AGG | 0.435475 | 5.3:+23797484 | MS.gene45075:CDS |
| ATATTTCCAAGGTATTTCTC+TGG | 0.438774 | 5.3:-23802491 | None:intergenic |
| TAGTGCTCATATTCTTGGAC+AGG | 0.443271 | 5.3:+23795122 | MS.gene45075:CDS |
| TAGGATTCGTCTTTGGGGTG+AGG | 0.445890 | 5.3:-23794787 | None:intergenic |
| TAAAGATGATATGTTTGTCT+TGG | 0.449787 | 5.3:+23799772 | MS.gene45075:CDS |
| GCTTGTGATTTCTCCGAGAC+GGG | 0.452159 | 5.3:-23803053 | None:intergenic |
| CCTTCCTTCACGTTTCCATC+GGG | 0.457055 | 5.3:-23794916 | None:intergenic |
| GCGTTCTTTGGGATATGAAT+CGG | 0.457658 | 5.3:+23795025 | MS.gene45075:CDS |
| CACTTTAAACAAATTGTAGC+TGG | 0.458103 | 5.3:+23796185 | MS.gene45075:CDS |
| GTTCCAGTGTGCAACTCTAC+AGG | 0.458867 | 5.3:+23802758 | MS.gene45075:CDS |
| TAGATTGACAAACAAGAGTT+CGG | 0.461082 | 5.3:+23800489 | MS.gene45075:intron |
| TGGGATTGTGGCGGCTAGGT+AGG | 0.464262 | 5.3:-23794806 | None:intergenic |
| TACTTCTCCTCTAGTAGTGC+AGG | 0.464959 | 5.3:-23796019 | None:intergenic |
| TGAGTGGATTAACACGTGTT+AGG | 0.465390 | 5.3:+23801016 | MS.gene45075:CDS |
| ACTTAAAACGATCAGGAAGC+TGG | 0.466587 | 5.3:-23802875 | None:intergenic |
| GAGCGTACGAGTCAGGGATA+AGG | 0.472636 | 5.3:+23804994 | MS.gene45075:CDS |
| CGTCTTTGAAGTGTTCGAGC+AGG | 0.475371 | 5.3:-23805045 | None:intergenic |
| GTCACTTCAATGCGCTCAAA+GGG | 0.482157 | 5.3:-23797473 | None:intergenic |
| TTGGATGCGCTTTGGGATTG+TGG | 0.483682 | 5.3:-23794818 | None:intergenic |
| TGCAGTTGAATGAAGGGGAT+GGG | 0.484436 | 5.3:+23802682 | MS.gene45075:intron |
| ACGTGAAGGAAGGGAAGAAA+TGG | 0.484460 | 5.3:+23794926 | MS.gene45075:CDS |
| AAAGCGCATCCAAATCTTTG+AGG | 0.485246 | 5.3:+23794828 | MS.gene45075:CDS |
| AATTCCAACTTAAAACGATC+AGG | 0.486336 | 5.3:-23802882 | None:intergenic |
| AGCACAATACAACTACATCT+TGG | 0.490255 | 5.3:+23804044 | MS.gene45075:CDS |
| AGATGATATGTTTGTCTTGG+AGG | 0.491603 | 5.3:+23799775 | MS.gene45075:CDS |
| AGGATTCGTCTTTGGGGTGA+GGG | 0.493228 | 5.3:-23794786 | None:intergenic |
| CTGCTTGATGTTTAAACACC+GGG | 0.493845 | 5.3:+23800539 | MS.gene45075:CDS |
| TTCGAGATCAGTACAGAGAC+AGG | 0.496512 | 5.3:+23799591 | MS.gene45075:CDS |
| CGCTTGTGATTTCTCCGAGA+CGG | 0.498168 | 5.3:-23803054 | None:intergenic |
| AGGTCCATGTTGAAGACATT+CGG | 0.498937 | 5.3:-23799719 | None:intergenic |
| AGTGTAACCTTAATCGGATC+GGG | 0.504192 | 5.3:-23794892 | None:intergenic |
| TTTAAGTTTGATGATGATGA+AGG | 0.505251 | 5.3:+23795078 | MS.gene45075:CDS |
| TTAAACATCAAGCAGTGCCC+TGG | 0.506802 | 5.3:-23800531 | None:intergenic |
| AGGCTTCGTCAGCATATTGG+AGG | 0.507081 | 5.3:+23797926 | MS.gene45075:intron |
| AGCTAATTTATCATCATGAC+TGG | 0.507221 | 5.3:+23799420 | MS.gene45075:CDS |
| GAATAATGCTCTTATTGCTA+AGG | 0.509045 | 5.3:+23794996 | MS.gene45075:CDS |
| ATCACAAGCGTATGCACTGC+AGG | 0.512893 | 5.3:+23803067 | MS.gene45075:CDS |
| TATGGATGCAAGCTTTGCAT+TGG | 0.514825 | 5.3:+23795994 | MS.gene45075:CDS |
| CGAGATCAGATCCACCAAGC+AGG | 0.516319 | 5.3:+23803588 | MS.gene45075:CDS |
| TGAGTTTGGCAAACCATGGC+AGG | 0.518859 | 5.3:+23802559 | MS.gene45075:CDS |
| CAGTGCCCTGGGCAATTCAT+CGG | 0.525822 | 5.3:-23800519 | None:intergenic |
| ACATGCAATTGCTTTGACAA+AGG | 0.526101 | 5.3:-23797791 | None:intergenic |
| AGCAATTCTCTGCCCCGTCT+CGG | 0.527465 | 5.3:+23803040 | MS.gene45075:CDS |
| TTGAAACCGATGAATTGCCC+AGG | 0.527757 | 5.3:+23800513 | MS.gene45075:CDS |
| TAATCCACTCAGGGCACCAC+TGG | 0.530558 | 5.3:-23801004 | None:intergenic |
| CTACGTGATACCCTGCTTGG+TGG | 0.530716 | 5.3:-23803599 | None:intergenic |
| CCCGATGGAAACGTGAAGGA+AGG | 0.532344 | 5.3:+23794916 | MS.gene45075:CDS |
| CAAACTCTGCAGTTGAATGA+AGG | 0.533204 | 5.3:+23802675 | MS.gene45075:intron |
| TGTCACTTCAATGCGCTCAA+AGG | 0.539336 | 5.3:-23797474 | None:intergenic |
| ATGGACCTGTGGGTGCAATC+TGG | 0.540479 | 5.3:+23799734 | MS.gene45075:CDS |
| CCCACGTTTCAATATTTCCA+AGG | 0.541391 | 5.3:-23802502 | None:intergenic |
| ATCTCACGCGCAATATCAAA+CGG | 0.541806 | 5.3:-23794958 | None:intergenic |
| TGACAGGAAGATTCAGAAGA+AGG | 0.543532 | 5.3:+23803635 | MS.gene45075:CDS |
| CATCTACGTGATACCCTGCT+TGG | 0.545135 | 5.3:-23803602 | None:intergenic |
| TTGCCGCGGACTTAGCCAGA+AGG | 0.546210 | 5.3:-23803018 | None:intergenic |
| GCAGTTGAATGAAGGGGATG+GGG | 0.550075 | 5.3:+23802683 | MS.gene45075:intron |
| TATTTCAGGAATATTTGGAT+CGG | 0.550856 | 5.3:+23799348 | MS.gene45075:intron |
| TAGAGACCAGAGAAATACCT+TGG | 0.551784 | 5.3:+23802485 | MS.gene45075:intron |
| CCAGGTGAGCGTACGAGTCA+GGG | 0.552161 | 5.3:+23804988 | MS.gene45075:intron |
| ACGTGTTAGGAGATTTCAGC+AGG | 0.553676 | 5.3:+23801029 | MS.gene45075:CDS |
| AAGGATGTATTAGGAATATG+AGG | 0.553799 | 5.3:-23797772 | None:intergenic |
| CTGCAGTTGAATGAAGGGGA+TGG | 0.556184 | 5.3:+23802681 | MS.gene45075:intron |
| GACATGATCGATGAAGTTCA+AGG | 0.560855 | 5.3:-23801523 | None:intergenic |
| GCTTTGGGATTGTGGCGGCT+AGG | 0.560989 | 5.3:-23794810 | None:intergenic |
| GTGTATCTGATGCATTGAGC+AGG | 0.561339 | 5.3:+23802733 | MS.gene45075:CDS |
| CATCTTGGTTGTTGGCGAAG+AGG | 0.562345 | 5.3:+23804059 | MS.gene45075:CDS |
| AGCCTCTAGAATACCTGCCA+TGG | 0.565750 | 5.3:-23802572 | None:intergenic |
| GGCTTCGTCAGCATATTGGA+GGG | 0.567002 | 5.3:+23797927 | MS.gene45075:intron |
| CCCCTCGTTGATTTGTGTCG+AGG | 0.568618 | 5.3:+23797748 | MS.gene45075:CDS |
| AAGTGTAACCTTAATCGGAT+CGG | 0.571063 | 5.3:-23794893 | None:intergenic |
| TAAACATCAAGCAGTGCCCT+GGG | 0.571207 | 5.3:-23800530 | None:intergenic |
| GGCGAAGAGGAAGCTAAGAC+AGG | 0.572491 | 5.3:+23804072 | MS.gene45075:CDS |
| GAAGGCTGAAGCTTCTCTCA+AGG | 0.573542 | 5.3:+23802526 | MS.gene45075:CDS |
| AAACCCCAAAATCAGCAAAA+CGG | 0.576768 | 5.3:-23800966 | None:intergenic |
| ACTGCTTGATGTTTAAACAC+CGG | 0.577476 | 5.3:+23800538 | MS.gene45075:CDS |
| CTTCGTCAGCATATTGGAGG+GGG | 0.582105 | 5.3:+23797929 | MS.gene45075:CDS |
| AAACTCTGCAGTTGAATGAA+GGG | 0.584420 | 5.3:+23802676 | MS.gene45075:intron |
| AGAGGAAGCTAAGACAGGAC+AGG | 0.584811 | 5.3:+23804077 | MS.gene45075:CDS |
| TGCCGCGGACTTAGCCAGAA+GGG | 0.587618 | 5.3:-23803017 | None:intergenic |
| GCGTTCAACAGATCCTAGAA+TGG | 0.588283 | 5.3:-23802955 | None:intergenic |
| TAAGTTGGAATTCTCAGCTG+AGG | 0.589792 | 5.3:+23802893 | MS.gene45075:CDS |
| CATGACCAGATTGCACCCAC+AGG | 0.589989 | 5.3:-23799739 | None:intergenic |
| AAATATTGAAACGTGGGAGA+AGG | 0.594497 | 5.3:+23802508 | MS.gene45075:CDS |
| TACCTCTGTACGATCGAACC+CGG | 0.597410 | 5.3:-23800557 | None:intergenic |
| ACTGTTATAGTCTTATCAGC+GGG | 0.598653 | 5.3:-23797712 | None:intergenic |
| AGCGATGAATCCTCTTCAAG+AGG | 0.600890 | 5.3:-23795048 | None:intergenic |
| ATATGAACTGAAACTTTCAA+CGG | 0.601256 | 5.3:+23801566 | MS.gene45075:CDS |
| ACCTTGGAAATATTGAAACG+TGG | 0.605393 | 5.3:+23802501 | MS.gene45075:CDS |
| CCTTGGAAATATTGAAACGT+GGG | 0.610408 | 5.3:+23802502 | MS.gene45075:CDS |
| CCGATGGAAACGTGAAGGAA+GGG | 0.612023 | 5.3:+23794917 | MS.gene45075:CDS |
| GTGTGTGTAGTCTCTTGAGA+CGG | 0.612057 | 5.3:+23795969 | MS.gene45075:intron |
| CTAGGTAGGATTCGTCTTTG+GGG | 0.612170 | 5.3:-23794792 | None:intergenic |
| TATGAATCGGCCTCTTGAAG+AGG | 0.613882 | 5.3:+23795038 | MS.gene45075:CDS |
| CTTGTGATTTCTCCGAGACG+GGG | 0.616634 | 5.3:-23803052 | None:intergenic |
| CAGAGACAGGGGCTATCAAG+AGG | 0.619774 | 5.3:+23799604 | MS.gene45075:CDS |
| TTAAGTTTGATGATGATGAA+GGG | 0.620692 | 5.3:+23795079 | MS.gene45075:CDS |
| TGGAGCGTTGAAAGCTGCTG+CGG | 0.622183 | 5.3:+23796205 | MS.gene45075:CDS |
| TGGATGAGTTTGGCAAACCA+TGG | 0.622699 | 5.3:+23802555 | MS.gene45075:CDS |
| TAACACGTGTTAATCCACTC+AGG | 0.625438 | 5.3:-23801014 | None:intergenic |
| GGCCCTTCTGGCTAAGTCCG+CGG | 0.626956 | 5.3:+23803015 | MS.gene45075:CDS |
| ACTATAACAGTGTACAGATG+TGG | 0.628180 | 5.3:+23797724 | MS.gene45075:CDS |
| TAGATGCTGATACAACTGAC+AGG | 0.628481 | 5.3:+23803619 | MS.gene45075:CDS |
| ATTAAGGTTACACTTCCCGA+TGG | 0.628911 | 5.3:+23794901 | MS.gene45075:CDS |
| GCTTCGTCAGCATATTGGAG+GGG | 0.630416 | 5.3:+23797928 | MS.gene45075:CDS |
| GAGATCAGATCCACCAAGCA+GGG | 0.631470 | 5.3:+23803589 | MS.gene45075:CDS |
| GGGCAGAGAATTGCTTGCCG+CGG | 0.634580 | 5.3:-23803032 | None:intergenic |
| TGAAACCGATGAATTGCCCA+GGG | 0.635498 | 5.3:+23800514 | MS.gene45075:CDS |
| TCTCAATAGTCATGACGTTG+TGG | 0.642556 | 5.3:-23805021 | None:intergenic |
| TTGCATCGAAATGAGGCCAG+TGG | 0.643531 | 5.3:+23800988 | MS.gene45075:CDS |
| ATGTCTTCAACATGGACCTG+TGG | 0.643638 | 5.3:+23799723 | MS.gene45075:CDS |
| TTGTAGATCCGAGCACCATG+TGG | 0.643916 | 5.3:-23799551 | None:intergenic |
| ATTGGACCCTGCACTACTAG+AGG | 0.644694 | 5.3:+23796012 | MS.gene45075:CDS |
| ACTTCTCCTCTAGTAGTGCA+GGG | 0.646239 | 5.3:-23796018 | None:intergenic |
| AACTCTGCAGTTGAATGAAG+GGG | 0.646831 | 5.3:+23802677 | MS.gene45075:intron |
| AACACGTGTTAATCCACTCA+GGG | 0.648107 | 5.3:-23801013 | None:intergenic |
| ATATTTGGATCGGCTTACAG+AGG | 0.648297 | 5.3:+23799358 | MS.gene45075:CDS |
| TCCTCGACACAAATCAACGA+GGG | 0.649373 | 5.3:-23797749 | None:intergenic |
| CACTGTTATAGTCTTATCAG+CGG | 0.651235 | 5.3:-23797713 | None:intergenic |
| TGTCTTCAACATGGACCTGT+GGG | 0.651235 | 5.3:+23799724 | MS.gene45075:CDS |
| AAACCTGTAGAGTTGCACAC+TGG | 0.652434 | 5.3:-23802761 | None:intergenic |
| TCGAGATCAGTACAGAGACA+GGG | 0.655527 | 5.3:+23799592 | MS.gene45075:CDS |
| CACCGGGTTCGATCGTACAG+AGG | 0.658534 | 5.3:+23800555 | MS.gene45075:CDS |
| GTGGGTGCAATCTGGTCATG+CGG | 0.661772 | 5.3:+23799742 | MS.gene45075:CDS |
| GAGGCCAGTGGTGCCCTGAG+TGG | 0.667648 | 5.3:+23801000 | MS.gene45075:CDS |
| ACTTCCCGATGGAAACGTGA+AGG | 0.671910 | 5.3:+23794912 | MS.gene45075:CDS |
| TAATTTATCATCATGACTGG+AGG | 0.674143 | 5.3:+23799423 | MS.gene45075:CDS |
| GATGCGCTTTGGGATTGTGG+CGG | 0.674198 | 5.3:-23794815 | None:intergenic |
| GATCGGGAGAGAGAGAAAGA+CGG | 0.680737 | 5.3:-23794876 | None:intergenic |
| CCAAAATCAGCAAAACGGAG+AGG | 0.680957 | 5.3:-23800961 | None:intergenic |
| TTCGTCAGCATATTGGAGGG+GGG | 0.691441 | 5.3:+23797930 | MS.gene45075:CDS |
| CGAGATCAGTACAGAGACAG+GGG | 0.693823 | 5.3:+23799593 | MS.gene45075:CDS |
| ATCACCGAATGTCTTCAACA+TGG | 0.700922 | 5.3:+23799715 | MS.gene45075:CDS |
| CCTCGACACAAATCAACGAG+GGG | 0.726336 | 5.3:-23797748 | None:intergenic |
| GTCCTCGACACAAATCAACG+AGG | 0.758098 | 5.3:-23797750 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 23794778 | 23805087 | 23794778 | ID=MS.gene45075 |
| chr5.3 | mRNA | 23794778 | 23805087 | 23794778 | ID=MS.gene45075.t1;Parent=MS.gene45075 |
| chr5.3 | exon | 23794778 | 23795143 | 23794778 | ID=MS.gene45075.t1.exon1;Parent=MS.gene45075.t1 |
| chr5.3 | CDS | 23794778 | 23795143 | 23794778 | ID=cds.MS.gene45075.t1;Parent=MS.gene45075.t1 |
| chr5.3 | exon | 23795979 | 23796038 | 23795979 | ID=MS.gene45075.t1.exon2;Parent=MS.gene45075.t1 |
| chr5.3 | CDS | 23795979 | 23796038 | 23795979 | ID=cds.MS.gene45075.t1;Parent=MS.gene45075.t1 |
| chr5.3 | exon | 23796137 | 23796226 | 23796137 | ID=MS.gene45075.t1.exon3;Parent=MS.gene45075.t1 |
| chr5.3 | CDS | 23796137 | 23796226 | 23796137 | ID=cds.MS.gene45075.t1;Parent=MS.gene45075.t1 |
| chr5.3 | exon | 23797464 | 23797538 | 23797464 | ID=MS.gene45075.t1.exon4;Parent=MS.gene45075.t1 |
| chr5.3 | CDS | 23797464 | 23797538 | 23797464 | ID=cds.MS.gene45075.t1;Parent=MS.gene45075.t1 |
| chr5.3 | exon | 23797691 | 23797819 | 23797691 | ID=MS.gene45075.t1.exon5;Parent=MS.gene45075.t1 |
| chr5.3 | CDS | 23797691 | 23797819 | 23797691 | ID=cds.MS.gene45075.t1;Parent=MS.gene45075.t1 |
| chr5.3 | exon | 23797928 | 23798017 | 23797928 | ID=MS.gene45075.t1.exon6;Parent=MS.gene45075.t1 |
| chr5.3 | CDS | 23797928 | 23798017 | 23797928 | ID=cds.MS.gene45075.t1;Parent=MS.gene45075.t1 |
| chr5.3 | exon | 23799356 | 23799444 | 23799356 | ID=MS.gene45075.t1.exon7;Parent=MS.gene45075.t1 |
| chr5.3 | CDS | 23799356 | 23799444 | 23799356 | ID=cds.MS.gene45075.t1;Parent=MS.gene45075.t1 |
| chr5.3 | exon | 23799529 | 23799625 | 23799529 | ID=MS.gene45075.t1.exon8;Parent=MS.gene45075.t1 |
| chr5.3 | CDS | 23799529 | 23799625 | 23799529 | ID=cds.MS.gene45075.t1;Parent=MS.gene45075.t1 |
| chr5.3 | exon | 23799710 | 23799796 | 23799710 | ID=MS.gene45075.t1.exon9;Parent=MS.gene45075.t1 |
| chr5.3 | CDS | 23799710 | 23799796 | 23799710 | ID=cds.MS.gene45075.t1;Parent=MS.gene45075.t1 |
| chr5.3 | exon | 23800492 | 23800576 | 23800492 | ID=MS.gene45075.t1.exon10;Parent=MS.gene45075.t1 |
| chr5.3 | CDS | 23800492 | 23800576 | 23800492 | ID=cds.MS.gene45075.t1;Parent=MS.gene45075.t1 |
| chr5.3 | exon | 23800956 | 23801050 | 23800956 | ID=MS.gene45075.t1.exon11;Parent=MS.gene45075.t1 |
| chr5.3 | CDS | 23800956 | 23801050 | 23800956 | ID=cds.MS.gene45075.t1;Parent=MS.gene45075.t1 |
| chr5.3 | exon | 23801381 | 23801413 | 23801381 | ID=MS.gene45075.t1.exon12;Parent=MS.gene45075.t1 |
| chr5.3 | CDS | 23801381 | 23801413 | 23801381 | ID=cds.MS.gene45075.t1;Parent=MS.gene45075.t1 |
| chr5.3 | exon | 23801501 | 23801587 | 23801501 | ID=MS.gene45075.t1.exon13;Parent=MS.gene45075.t1 |
| chr5.3 | CDS | 23801501 | 23801587 | 23801501 | ID=cds.MS.gene45075.t1;Parent=MS.gene45075.t1 |
| chr5.3 | exon | 23802488 | 23802580 | 23802488 | ID=MS.gene45075.t1.exon14;Parent=MS.gene45075.t1 |
| chr5.3 | CDS | 23802488 | 23802580 | 23802488 | ID=cds.MS.gene45075.t1;Parent=MS.gene45075.t1 |
| chr5.3 | exon | 23802687 | 23802779 | 23802687 | ID=MS.gene45075.t1.exon15;Parent=MS.gene45075.t1 |
| chr5.3 | CDS | 23802687 | 23802779 | 23802687 | ID=cds.MS.gene45075.t1;Parent=MS.gene45075.t1 |
| chr5.3 | exon | 23802867 | 23803088 | 23802867 | ID=MS.gene45075.t1.exon16;Parent=MS.gene45075.t1 |
| chr5.3 | CDS | 23802867 | 23803088 | 23802867 | ID=cds.MS.gene45075.t1;Parent=MS.gene45075.t1 |
| chr5.3 | exon | 23803585 | 23803656 | 23803585 | ID=MS.gene45075.t1.exon17;Parent=MS.gene45075.t1 |
| chr5.3 | CDS | 23803585 | 23803656 | 23803585 | ID=cds.MS.gene45075.t1;Parent=MS.gene45075.t1 |
| chr5.3 | exon | 23804027 | 23804098 | 23804027 | ID=MS.gene45075.t1.exon18;Parent=MS.gene45075.t1 |
| chr5.3 | CDS | 23804027 | 23804098 | 23804027 | ID=cds.MS.gene45075.t1;Parent=MS.gene45075.t1 |
| chr5.3 | exon | 23804992 | 23805087 | 23804992 | ID=MS.gene45075.t1.exon19;Parent=MS.gene45075.t1 |
| chr5.3 | CDS | 23804992 | 23805087 | 23804992 | ID=cds.MS.gene45075.t1;Parent=MS.gene45075.t1 |
| Gene Sequence |
| Protein sequence |
