Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43889.t1 | XP_003613276.1 | 97.8 | 676 | 15 | 0 | 1 | 676 | 36 | 711 | 0.00E+00 | 1365.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43889.t1 | O04630 | 76.0 | 675 | 162 | 0 | 1 | 675 | 34 | 708 | 0.0e+00 | 1083.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43889.t1 | G7K2Q8 | 97.8 | 676 | 15 | 0 | 1 | 676 | 36 | 711 | 0.0e+00 | 1365.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43889 | MS.gene005227 | PPI |
| MS.gene43889 | MS.gene52774 | PPI |
| MS.gene43889 | MS.gene27335 | PPI |
| MS.gene43889 | MS.gene41088 | PPI |
| MS.gene43889 | MS.gene034805 | PPI |
| MS.gene43889 | MS.gene056036 | PPI |
| MS.gene43889 | MS.gene014350 | PPI |
| MS.gene43889 | MS.gene77474 | PPI |
| MS.gene055573 | MS.gene43889 | PPI |
| MS.gene43889 | MS.gene26939 | PPI |
| MS.gene43889 | MS.gene064832 | PPI |
| MS.gene44095 | MS.gene43889 | PPI |
| MS.gene43889 | MS.gene69330 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43889.t1 | MTR_5g034820 | 97.781 | 676 | 15 | 0 | 1 | 676 | 36 | 711 | 0.0 | 1380 |
| MS.gene43889.t1 | MTR_3g083180 | 39.646 | 565 | 325 | 12 | 114 | 669 | 86 | 643 | 3.24e-135 | 412 |
| MS.gene43889.t1 | MTR_3g077340 | 69.406 | 219 | 51 | 2 | 115 | 333 | 35 | 237 | 8.85e-99 | 303 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43889.t1 | AT5G26830 | 76.000 | 675 | 162 | 0 | 1 | 675 | 34 | 708 | 0.0 | 1085 |
| MS.gene43889.t1 | AT2G04842 | 38.772 | 570 | 333 | 13 | 114 | 674 | 84 | 646 | 8.02e-133 | 405 |
| MS.gene43889.t1 | AT2G04842 | 38.772 | 570 | 333 | 13 | 114 | 674 | 84 | 646 | 8.02e-133 | 405 |
| MS.gene43889.t1 | AT1G17960 | 63.889 | 288 | 99 | 2 | 386 | 669 | 92 | 378 | 5.50e-129 | 386 |
| MS.gene43889.t1 | AT1G17960 | 62.637 | 91 | 33 | 1 | 5 | 94 | 6 | 96 | 5.87e-29 | 119 |
| MS.gene43889.t1 | AT1G17960 | 64.085 | 284 | 97 | 2 | 390 | 669 | 169 | 451 | 3.67e-126 | 382 |
| MS.gene43889.t1 | AT1G17960 | 63.743 | 171 | 60 | 2 | 5 | 173 | 6 | 176 | 5.43e-68 | 230 |
| MS.gene43889.t1 | AT1G18130 | 66.438 | 146 | 45 | 1 | 524 | 669 | 17 | 158 | 1.07e-60 | 201 |
Find 167 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCTTATTTCAGGAATATT+TGG | 0.091414 | 5.2:+25111321 | MS.gene43889:intron |
| CATAACAGGTCTCTCAATTT+TGG | 0.134497 | 5.2:-25114904 | None:intergenic |
| GAAAGTTTACAAAGAGTTTA+TGG | 0.138256 | 5.2:+25109941 | MS.gene43889:CDS |
| GATCATGTCTATAAAATATT+TGG | 0.175700 | 5.2:+25113518 | MS.gene43889:CDS |
| GCTCTTATTGCTAAGGTTAA+TGG | 0.194013 | 5.2:+25106989 | MS.gene43889:CDS |
| TCCTGACAATAAGAGTTTAA+AGG | 0.208364 | 5.2:+25109973 | MS.gene43889:CDS |
| CATTCTAGTGCTCATATTCT+TGG | 0.208832 | 5.2:+25107103 | MS.gene43889:CDS |
| GCTAGGTAGGATTCGTCTTT+GGG | 0.215030 | 5.2:-25106779 | None:intergenic |
| GGCTAGGTAGGATTCGTCTT+TGG | 0.223839 | 5.2:-25106780 | None:intergenic |
| CTAAGGTTAATGGCGTTCTT+TGG | 0.274825 | 5.2:+25106999 | MS.gene43889:CDS |
| CAAAGATTTGGATGCGCTTT+GGG | 0.276393 | 5.2:-25106811 | None:intergenic |
| TAGAGCACTACAAGGGTAAA+TGG | 0.292473 | 5.2:+25114976 | MS.gene43889:CDS |
| CTTGAAGCGCCTCAAAGATT+TGG | 0.307539 | 5.2:-25106823 | None:intergenic |
| TCTCTCTCCCGATCCGATTA+AGG | 0.312026 | 5.2:+25106871 | MS.gene43889:CDS |
| AAGGAAGCTTTGGATGAGTT+TGG | 0.338554 | 5.2:+25114526 | MS.gene43889:CDS |
| GCTTTGACAAAGGATGTATT+AGG | 0.342264 | 5.2:-25109758 | None:intergenic |
| AGCTTCTCTCAAGGAAGCTT+TGG | 0.345335 | 5.2:+25114516 | MS.gene43889:CDS |
| TCCAGGCTTCGTCAGCATAT+TGG | 0.363753 | 5.2:+25109900 | MS.gene43889:intron |
| TCCAGGTGAGCGTACGAGTC+AGG | 0.368214 | 5.2:+25116969 | MS.gene43889:intron |
| TCAAAGATTTGGATGCGCTT+TGG | 0.375605 | 5.2:-25106812 | None:intergenic |
| ATGGCTCTGTGTATCATAAC+AGG | 0.378781 | 5.2:-25114918 | None:intergenic |
| ATGATACACAGAGCCATTCT+AGG | 0.381073 | 5.2:+25114924 | MS.gene43889:CDS |
| ACAAGGGTAAATGGCCCTTC+TGG | 0.384970 | 5.2:+25114985 | MS.gene43889:CDS |
| ACCTTTAAACTCTTATTGTC+AGG | 0.387286 | 5.2:-25109974 | None:intergenic |
| CAAAGCAATTGCATGTTTGA+AGG | 0.391968 | 5.2:+25109775 | MS.gene43889:CDS |
| TAAGGTTAATGGCGTTCTTT+GGG | 0.392390 | 5.2:+25107000 | MS.gene43889:CDS |
| CCCTTCCTTCACGTTTCCGT+CGG | 0.398371 | 5.2:-25106903 | None:intergenic |
| GATACACTGATGTCTATCTT+TGG | 0.399463 | 5.2:-25114699 | None:intergenic |
| TAGTCTCTTGAGACGGAGTA+TGG | 0.405636 | 5.2:+25107945 | MS.gene43889:intron |
| TCGGGAAGTGTAACCTTAAT+CGG | 0.412663 | 5.2:-25106884 | None:intergenic |
| TACAACTACATCTTGGTTGT+TGG | 0.416034 | 5.2:+25116033 | MS.gene43889:CDS |
| CCTTCCTTCACGTTTCCGTC+GGG | 0.422716 | 5.2:-25106902 | None:intergenic |
| CTTGTAGTGCTCTAAAAGTA+TGG | 0.424295 | 5.2:-25114967 | None:intergenic |
| TTTATGTTAGCCCGGGAAGC+TGG | 0.427800 | 5.2:+25111497 | MS.gene43889:intron |
| CATTGAAGTGACACGTGATC+AGG | 0.435475 | 5.2:+25109461 | MS.gene43889:CDS |
| ATATTTCCAAGGTATTTCTC+TGG | 0.438774 | 5.2:-25114472 | None:intergenic |
| TAGTGCTCATATTCTTGGAC+AGG | 0.440831 | 5.2:+25107108 | MS.gene43889:CDS |
| TAGGATTCGTCTTTGGGGTG+AGG | 0.445890 | 5.2:-25106773 | None:intergenic |
| TAAAGATGATATGTTTGTCT+TGG | 0.449787 | 5.2:+25111750 | MS.gene43889:CDS |
| GCGTTCTTTGGGATATGAAT+CGG | 0.457658 | 5.2:+25107011 | MS.gene43889:CDS |
| CACTTTAAACAAATTGTAGC+TGG | 0.458103 | 5.2:+25108154 | MS.gene43889:CDS |
| GTTCCAGTGTGCAACTCTAC+AGG | 0.458867 | 5.2:+25114740 | MS.gene43889:CDS |
| GCTTGTGATTTCTCCGAGAC+GGG | 0.460319 | 5.2:-25115035 | None:intergenic |
| TAGATTGACAAACAAGAGTT+CGG | 0.461082 | 5.2:+25112470 | MS.gene43889:intron |
| TGGGATTGTGGCGGCTAGGT+AGG | 0.464262 | 5.2:-25106792 | None:intergenic |
| TACTTCTCCTCTAGTAGTGC+AGG | 0.464959 | 5.2:-25107988 | None:intergenic |
| TGAGTGGATTAACACGTGTT+AGG | 0.465390 | 5.2:+25112997 | MS.gene43889:CDS |
| ACTTAAAACGATCAGGAAGC+TGG | 0.466587 | 5.2:-25114857 | None:intergenic |
| GAGCGTACGAGTCAGGGATA+AGG | 0.472636 | 5.2:+25116976 | MS.gene43889:CDS |
| CGTCTTTGAAGTGTTCGAGC+AGG | 0.475371 | 5.2:-25117027 | None:intergenic |
| GTCACTTCAATGCGCTCAAA+GGG | 0.482157 | 5.2:-25109450 | None:intergenic |
| TTGGATGCGCTTTGGGATTG+TGG | 0.483682 | 5.2:-25106804 | None:intergenic |
| TGCAGTTGAATGAAGGGGAT+GGG | 0.484436 | 5.2:+25114664 | MS.gene43889:intron |
| ACGTGAAGGAAGGGAAGAAA+TGG | 0.484460 | 5.2:+25106912 | MS.gene43889:CDS |
| AAAGCGCATCCAAATCTTTG+AGG | 0.485246 | 5.2:+25106814 | MS.gene43889:CDS |
| AATTCCAACTTAAAACGATC+AGG | 0.486336 | 5.2:-25114864 | None:intergenic |
| AGCACAATACAACTACATCT+TGG | 0.490255 | 5.2:+25116026 | MS.gene43889:CDS |
| AGATGATATGTTTGTCTTGG+AGG | 0.491603 | 5.2:+25111753 | MS.gene43889:CDS |
| AGGATTCGTCTTTGGGGTGA+GGG | 0.493228 | 5.2:-25106772 | None:intergenic |
| CTGCTTGATGTTTAAACACC+GGG | 0.493845 | 5.2:+25112520 | MS.gene43889:CDS |
| TTCGAGATCAGTACAGAGAC+AGG | 0.496512 | 5.2:+25111569 | MS.gene43889:CDS |
| CGCTTGTGATTTCTCCGAGA+CGG | 0.498168 | 5.2:-25115036 | None:intergenic |
| AGGTCCATGTTGAAGACATT+CGG | 0.498937 | 5.2:-25111697 | None:intergenic |
| AGTGTAACCTTAATCGGATC+GGG | 0.504192 | 5.2:-25106878 | None:intergenic |
| TTTAAGTTTGATGATGATGA+AGG | 0.505251 | 5.2:+25107064 | MS.gene43889:CDS |
| TTAAACATCAAGCAGTGCCC+TGG | 0.506802 | 5.2:-25112512 | None:intergenic |
| AGGCTTCGTCAGCATATTGG+AGG | 0.507081 | 5.2:+25109903 | MS.gene43889:intron |
| AGCTAATTTATCATCATGAC+TGG | 0.507221 | 5.2:+25111398 | MS.gene43889:CDS |
| ATCACAAGCGTATGCACTGC+AGG | 0.512893 | 5.2:+25115049 | MS.gene43889:CDS |
| TATGGATGCAAGCTTTGCAT+TGG | 0.514825 | 5.2:+25107963 | MS.gene43889:CDS |
| CGAGATCAGATCCACCAAGC+AGG | 0.516319 | 5.2:+25115570 | MS.gene43889:CDS |
| TGAGTTTGGCAAACCATGGC+AGG | 0.518859 | 5.2:+25114540 | MS.gene43889:CDS |
| CAGTGCCCTGGGCAATTCAT+CGG | 0.525822 | 5.2:-25112500 | None:intergenic |
| ACATGCAATTGCTTTGACAA+AGG | 0.526101 | 5.2:-25109768 | None:intergenic |
| TTGAAACCGATGAATTGCCC+AGG | 0.527757 | 5.2:+25112494 | MS.gene43889:CDS |
| TAATCCACTCAGGGCACCAC+TGG | 0.530558 | 5.2:-25112985 | None:intergenic |
| CTACGTGATACCCTGCTTGG+TGG | 0.530716 | 5.2:-25115581 | None:intergenic |
| CAAACTCTGCAGTTGAATGA+AGG | 0.533204 | 5.2:+25114657 | MS.gene43889:intron |
| GAATAATGCTCTTATTGCTA+AGG | 0.534470 | 5.2:+25106982 | MS.gene43889:CDS |
| TGTCACTTCAATGCGCTCAA+AGG | 0.539336 | 5.2:-25109451 | None:intergenic |
| ATGGACCTGTGGGTGCAATC+TGG | 0.540479 | 5.2:+25111712 | MS.gene43889:CDS |
| CCCACGTTTCAATATTTCCA+AGG | 0.541391 | 5.2:-25114483 | None:intergenic |
| TGACAGGAAGATTCAGAAGA+AGG | 0.543532 | 5.2:+25115617 | MS.gene43889:CDS |
| CATCTACGTGATACCCTGCT+TGG | 0.545135 | 5.2:-25115584 | None:intergenic |
| TTGCCGCGGACTTAGCCAGA+AGG | 0.546210 | 5.2:-25115000 | None:intergenic |
| GCAGTTGAATGAAGGGGATG+GGG | 0.550075 | 5.2:+25114665 | MS.gene43889:intron |
| TATTTCAGGAATATTTGGAT+CGG | 0.550856 | 5.2:+25111326 | MS.gene43889:intron |
| TAGAGACCAGAGAAATACCT+TGG | 0.551784 | 5.2:+25114466 | MS.gene43889:intron |
| CCAGGTGAGCGTACGAGTCA+GGG | 0.552161 | 5.2:+25116970 | MS.gene43889:intron |
| ACGTGTTAGGAGATTTCAGC+AGG | 0.553676 | 5.2:+25113010 | MS.gene43889:CDS |
| AAGGATGTATTAGGAATATG+AGG | 0.553799 | 5.2:-25109749 | None:intergenic |
| CTGCAGTTGAATGAAGGGGA+TGG | 0.556184 | 5.2:+25114663 | MS.gene43889:intron |
| GACATGATCGATGAAGTTCA+AGG | 0.560855 | 5.2:-25113504 | None:intergenic |
| GCTTTGGGATTGTGGCGGCT+AGG | 0.560989 | 5.2:-25106796 | None:intergenic |
| GTGTATCTGATGCATTGAGC+AGG | 0.561339 | 5.2:+25114715 | MS.gene43889:CDS |
| CATCTTGGTTGTTGGCGAAG+AGG | 0.562345 | 5.2:+25116041 | MS.gene43889:CDS |
| AGCAATTCTCTACCCCGTCT+CGG | 0.565940 | 5.2:+25115022 | MS.gene43889:CDS |
| GGCTTCGTCAGCATATTGGA+GGG | 0.567002 | 5.2:+25109904 | MS.gene43889:intron |
| CCCGACGGAAACGTGAAGGA+AGG | 0.567829 | 5.2:+25106902 | MS.gene43889:CDS |
| CCCCTCGTTGATTTGTGTCG+AGG | 0.568618 | 5.2:+25109725 | MS.gene43889:CDS |
| AAGTGTAACCTTAATCGGAT+CGG | 0.571063 | 5.2:-25106879 | None:intergenic |
| TAAACATCAAGCAGTGCCCT+GGG | 0.571207 | 5.2:-25112511 | None:intergenic |
| GGCGAAGAGGAAGCTAAGAC+AGG | 0.572491 | 5.2:+25116054 | MS.gene43889:CDS |
| GAAGGCTGAAGCTTCTCTCA+AGG | 0.573542 | 5.2:+25114507 | MS.gene43889:CDS |
| ATCTCACGCGCGATATCGAA+CGG | 0.575688 | 5.2:-25106944 | None:intergenic |
| AAACCCCAAAATCAGCAAAA+CGG | 0.576768 | 5.2:-25112947 | None:intergenic |
| ACTGCTTGATGTTTAAACAC+CGG | 0.577476 | 5.2:+25112519 | MS.gene43889:CDS |
| CTTCGTCAGCATATTGGAGG+GGG | 0.582105 | 5.2:+25109906 | MS.gene43889:CDS |
| AAACTCTGCAGTTGAATGAA+GGG | 0.584420 | 5.2:+25114658 | MS.gene43889:intron |
| AGAGGAAGCTAAGACAGGAC+AGG | 0.584811 | 5.2:+25116059 | MS.gene43889:CDS |
| TGCCGCGGACTTAGCCAGAA+GGG | 0.587618 | 5.2:-25114999 | None:intergenic |
| GCGTTCAACAGATCCTAGAA+TGG | 0.588283 | 5.2:-25114937 | None:intergenic |
| TAAGTTGGAATTCTCAGCTG+AGG | 0.589792 | 5.2:+25114875 | MS.gene43889:CDS |
| CATGACCAGATTGCACCCAC+AGG | 0.589989 | 5.2:-25111717 | None:intergenic |
| AAATATTGAAACGTGGGAGA+AGG | 0.594497 | 5.2:+25114489 | MS.gene43889:CDS |
| TACCTCTGTACGATCGAACC+CGG | 0.597410 | 5.2:-25112538 | None:intergenic |
| ACTGTTATAGTCTTATCAGC+GGG | 0.598653 | 5.2:-25109689 | None:intergenic |
| AGCGATGAATCCTCTTCAAG+AGG | 0.600890 | 5.2:-25107034 | None:intergenic |
| ATATGAACTGAAACTTTCAA+CGG | 0.601256 | 5.2:+25113547 | MS.gene43889:CDS |
| GACCTCTAGAATACCTGCCA+TGG | 0.602239 | 5.2:-25114553 | None:intergenic |
| ACTTCCCGACGGAAACGTGA+AGG | 0.602856 | 5.2:+25106898 | MS.gene43889:CDS |
| ACCTTGGAAATATTGAAACG+TGG | 0.605393 | 5.2:+25114482 | MS.gene43889:CDS |
| CCTTGGAAATATTGAAACGT+GGG | 0.610408 | 5.2:+25114483 | MS.gene43889:CDS |
| GTGTGTGTAGTCTCTTGAGA+CGG | 0.612057 | 5.2:+25107938 | MS.gene43889:intron |
| CTAGGTAGGATTCGTCTTTG+GGG | 0.612170 | 5.2:-25106778 | None:intergenic |
| TATGAATCGGCCTCTTGAAG+AGG | 0.613882 | 5.2:+25107024 | MS.gene43889:CDS |
| CAGAGACAGGGGCTATCAAG+AGG | 0.619774 | 5.2:+25111582 | MS.gene43889:CDS |
| TTAAGTTTGATGATGATGAA+GGG | 0.620692 | 5.2:+25107065 | MS.gene43889:CDS |
| CTTGTGATTTCTCCGAGACG+GGG | 0.621367 | 5.2:-25115034 | None:intergenic |
| CCGACGGAAACGTGAAGGAA+GGG | 0.622254 | 5.2:+25106903 | MS.gene43889:CDS |
| TGGATGAGTTTGGCAAACCA+TGG | 0.622699 | 5.2:+25114536 | MS.gene43889:CDS |
| TGGAGCGTTGAAAGCTGTTG+CGG | 0.624816 | 5.2:+25108174 | MS.gene43889:CDS |
| TAACACGTGTTAATCCACTC+AGG | 0.625438 | 5.2:-25112995 | None:intergenic |
| GGCCCTTCTGGCTAAGTCCG+CGG | 0.626956 | 5.2:+25114997 | MS.gene43889:CDS |
| ACTATAACAGTGTACAGATG+TGG | 0.628180 | 5.2:+25109701 | MS.gene43889:CDS |
| TAGATGCTGATACAACTGAC+AGG | 0.628481 | 5.2:+25115601 | MS.gene43889:CDS |
| GCTTCGTCAGCATATTGGAG+GGG | 0.630416 | 5.2:+25109905 | MS.gene43889:CDS |
| GAGATCAGATCCACCAAGCA+GGG | 0.631470 | 5.2:+25115571 | MS.gene43889:CDS |
| TGAAACCGATGAATTGCCCA+GGG | 0.635498 | 5.2:+25112495 | MS.gene43889:CDS |
| TCTCAATAGTCATGACGTTG+TGG | 0.642556 | 5.2:-25117003 | None:intergenic |
| TTGCATCGAAATGAGGCCAG+TGG | 0.643531 | 5.2:+25112969 | MS.gene43889:CDS |
| ATGTCTTCAACATGGACCTG+TGG | 0.643638 | 5.2:+25111701 | MS.gene43889:CDS |
| TTGTAGATCCGAGCACCATG+TGG | 0.643916 | 5.2:-25111529 | None:intergenic |
| ATTGGACCCTGCACTACTAG+AGG | 0.644694 | 5.2:+25107981 | MS.gene43889:CDS |
| ACTTCTCCTCTAGTAGTGCA+GGG | 0.646239 | 5.2:-25107987 | None:intergenic |
| AACTCTGCAGTTGAATGAAG+GGG | 0.646831 | 5.2:+25114659 | MS.gene43889:intron |
| AACACGTGTTAATCCACTCA+GGG | 0.648107 | 5.2:-25112994 | None:intergenic |
| ATATTTGGATCGGCTTACAG+AGG | 0.648297 | 5.2:+25111336 | MS.gene43889:CDS |
| TCCTCGACACAAATCAACGA+GGG | 0.649373 | 5.2:-25109726 | None:intergenic |
| CACTGTTATAGTCTTATCAG+CGG | 0.651235 | 5.2:-25109690 | None:intergenic |
| TGTCTTCAACATGGACCTGT+GGG | 0.651235 | 5.2:+25111702 | MS.gene43889:CDS |
| AAACCTGTAGAGTTGCACAC+TGG | 0.652434 | 5.2:-25114743 | None:intergenic |
| TCGAGATCAGTACAGAGACA+GGG | 0.655527 | 5.2:+25111570 | MS.gene43889:CDS |
| CACCGGGTTCGATCGTACAG+AGG | 0.658534 | 5.2:+25112536 | MS.gene43889:CDS |
| GTGGGTGCAATCTGGTCATG+CGG | 0.661772 | 5.2:+25111720 | MS.gene43889:CDS |
| GAGGCCAGTGGTGCCCTGAG+TGG | 0.667648 | 5.2:+25112981 | MS.gene43889:CDS |
| TAATTTATCATCATGACTGG+AGG | 0.674143 | 5.2:+25111401 | MS.gene43889:CDS |
| GATGCGCTTTGGGATTGTGG+CGG | 0.674198 | 5.2:-25106801 | None:intergenic |
| GGGTAGAGAATTGCTTGCCG+CGG | 0.678267 | 5.2:-25115014 | None:intergenic |
| GATCGGGAGAGAGAGAAAGA+CGG | 0.680737 | 5.2:-25106862 | None:intergenic |
| CCAAAATCAGCAAAACGGAG+AGG | 0.680957 | 5.2:-25112942 | None:intergenic |
| TTCGTCAGCATATTGGAGGG+GGG | 0.691441 | 5.2:+25109907 | MS.gene43889:CDS |
| CGAGATCAGTACAGAGACAG+GGG | 0.693823 | 5.2:+25111571 | MS.gene43889:CDS |
| ATCACCGAATGTCTTCAACA+TGG | 0.700922 | 5.2:+25111693 | MS.gene43889:CDS |
| ATTAAGGTTACACTTCCCGA+CGG | 0.701902 | 5.2:+25106887 | MS.gene43889:CDS |
| CCTCGACACAAATCAACGAG+GGG | 0.726336 | 5.2:-25109725 | None:intergenic |
| GTCCTCGACACAAATCAACG+AGG | 0.758098 | 5.2:-25109727 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 25106764 | 25117069 | 25106764 | ID=MS.gene43889 |
| chr5.2 | mRNA | 25106764 | 25117069 | 25106764 | ID=MS.gene43889.t1;Parent=MS.gene43889 |
| chr5.2 | exon | 25106764 | 25107129 | 25106764 | ID=MS.gene43889.t1.exon1;Parent=MS.gene43889.t1 |
| chr5.2 | CDS | 25106764 | 25107129 | 25106764 | ID=cds.MS.gene43889.t1;Parent=MS.gene43889.t1 |
| chr5.2 | exon | 25107948 | 25108007 | 25107948 | ID=MS.gene43889.t1.exon2;Parent=MS.gene43889.t1 |
| chr5.2 | CDS | 25107948 | 25108007 | 25107948 | ID=cds.MS.gene43889.t1;Parent=MS.gene43889.t1 |
| chr5.2 | exon | 25108106 | 25108195 | 25108106 | ID=MS.gene43889.t1.exon3;Parent=MS.gene43889.t1 |
| chr5.2 | CDS | 25108106 | 25108195 | 25108106 | ID=cds.MS.gene43889.t1;Parent=MS.gene43889.t1 |
| chr5.2 | exon | 25109441 | 25109515 | 25109441 | ID=MS.gene43889.t1.exon4;Parent=MS.gene43889.t1 |
| chr5.2 | CDS | 25109441 | 25109515 | 25109441 | ID=cds.MS.gene43889.t1;Parent=MS.gene43889.t1 |
| chr5.2 | exon | 25109668 | 25109796 | 25109668 | ID=MS.gene43889.t1.exon5;Parent=MS.gene43889.t1 |
| chr5.2 | CDS | 25109668 | 25109796 | 25109668 | ID=cds.MS.gene43889.t1;Parent=MS.gene43889.t1 |
| chr5.2 | exon | 25109905 | 25109994 | 25109905 | ID=MS.gene43889.t1.exon6;Parent=MS.gene43889.t1 |
| chr5.2 | CDS | 25109905 | 25109994 | 25109905 | ID=cds.MS.gene43889.t1;Parent=MS.gene43889.t1 |
| chr5.2 | exon | 25111334 | 25111422 | 25111334 | ID=MS.gene43889.t1.exon7;Parent=MS.gene43889.t1 |
| chr5.2 | CDS | 25111334 | 25111422 | 25111334 | ID=cds.MS.gene43889.t1;Parent=MS.gene43889.t1 |
| chr5.2 | exon | 25111507 | 25111603 | 25111507 | ID=MS.gene43889.t1.exon8;Parent=MS.gene43889.t1 |
| chr5.2 | CDS | 25111507 | 25111603 | 25111507 | ID=cds.MS.gene43889.t1;Parent=MS.gene43889.t1 |
| chr5.2 | exon | 25111688 | 25111774 | 25111688 | ID=MS.gene43889.t1.exon9;Parent=MS.gene43889.t1 |
| chr5.2 | CDS | 25111688 | 25111774 | 25111688 | ID=cds.MS.gene43889.t1;Parent=MS.gene43889.t1 |
| chr5.2 | exon | 25112473 | 25112557 | 25112473 | ID=MS.gene43889.t1.exon10;Parent=MS.gene43889.t1 |
| chr5.2 | CDS | 25112473 | 25112557 | 25112473 | ID=cds.MS.gene43889.t1;Parent=MS.gene43889.t1 |
| chr5.2 | exon | 25112937 | 25113031 | 25112937 | ID=MS.gene43889.t1.exon11;Parent=MS.gene43889.t1 |
| chr5.2 | CDS | 25112937 | 25113031 | 25112937 | ID=cds.MS.gene43889.t1;Parent=MS.gene43889.t1 |
| chr5.2 | exon | 25113362 | 25113394 | 25113362 | ID=MS.gene43889.t1.exon12;Parent=MS.gene43889.t1 |
| chr5.2 | CDS | 25113362 | 25113394 | 25113362 | ID=cds.MS.gene43889.t1;Parent=MS.gene43889.t1 |
| chr5.2 | exon | 25113482 | 25113568 | 25113482 | ID=MS.gene43889.t1.exon13;Parent=MS.gene43889.t1 |
| chr5.2 | CDS | 25113482 | 25113568 | 25113482 | ID=cds.MS.gene43889.t1;Parent=MS.gene43889.t1 |
| chr5.2 | exon | 25114469 | 25114561 | 25114469 | ID=MS.gene43889.t1.exon14;Parent=MS.gene43889.t1 |
| chr5.2 | CDS | 25114469 | 25114561 | 25114469 | ID=cds.MS.gene43889.t1;Parent=MS.gene43889.t1 |
| chr5.2 | exon | 25114669 | 25114761 | 25114669 | ID=MS.gene43889.t1.exon15;Parent=MS.gene43889.t1 |
| chr5.2 | CDS | 25114669 | 25114761 | 25114669 | ID=cds.MS.gene43889.t1;Parent=MS.gene43889.t1 |
| chr5.2 | exon | 25114849 | 25115070 | 25114849 | ID=MS.gene43889.t1.exon16;Parent=MS.gene43889.t1 |
| chr5.2 | CDS | 25114849 | 25115070 | 25114849 | ID=cds.MS.gene43889.t1;Parent=MS.gene43889.t1 |
| chr5.2 | exon | 25115567 | 25115638 | 25115567 | ID=MS.gene43889.t1.exon17;Parent=MS.gene43889.t1 |
| chr5.2 | CDS | 25115567 | 25115638 | 25115567 | ID=cds.MS.gene43889.t1;Parent=MS.gene43889.t1 |
| chr5.2 | exon | 25116009 | 25116080 | 25116009 | ID=MS.gene43889.t1.exon18;Parent=MS.gene43889.t1 |
| chr5.2 | CDS | 25116009 | 25116080 | 25116009 | ID=cds.MS.gene43889.t1;Parent=MS.gene43889.t1 |
| chr5.2 | exon | 25116974 | 25117069 | 25116974 | ID=MS.gene43889.t1.exon19;Parent=MS.gene43889.t1 |
| chr5.2 | CDS | 25116974 | 25117069 | 25116974 | ID=cds.MS.gene43889.t1;Parent=MS.gene43889.t1 |
| Gene Sequence |
| Protein sequence |
