Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034955.t1 | XP_013448036.1 | 95.7 | 207 | 9 | 0 | 1 | 207 | 1 | 207 | 1.30E-107 | 399.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034955.t1 | Q9C7A8 | 64.4 | 205 | 72 | 1 | 1 | 205 | 1 | 204 | 8.4e-71 | 268.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034955.t1 | I3SFH0 | 95.7 | 207 | 9 | 0 | 1 | 207 | 1 | 207 | 9.5e-108 | 399.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene066552 | MS.gene034955 | PPI |
| MS.gene034955 | MS.gene025347 | PPI |
| MS.gene034955 | MS.gene85342 | PPI |
| MS.gene78156 | MS.gene034955 | PPI |
| MS.gene034955 | MS.gene062116 | PPI |
| MS.gene071261 | MS.gene034955 | PPI |
| MS.gene034955 | MS.gene070139 | PPI |
| MS.gene045765 | MS.gene034955 | PPI |
| MS.gene066551 | MS.gene034955 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034955.t1 | MTR_7g029455 | 95.652 | 207 | 9 | 0 | 1 | 207 | 1 | 207 | 2.31e-147 | 408 |
| MS.gene034955.t1 | MTR_7g029455 | 92.958 | 213 | 9 | 1 | 1 | 207 | 1 | 213 | 7.70e-145 | 402 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034955.t1 | AT3G12530 | 64.390 | 205 | 72 | 1 | 1 | 205 | 1 | 204 | 1.43e-94 | 275 |
| MS.gene034955.t1 | AT3G12530 | 64.390 | 205 | 72 | 1 | 1 | 205 | 1 | 204 | 1.43e-94 | 275 |
| MS.gene034955.t1 | AT3G12530 | 65.054 | 186 | 64 | 1 | 20 | 205 | 1 | 185 | 9.32e-86 | 252 |
| MS.gene034955.t1 | AT3G12530 | 66.667 | 147 | 49 | 0 | 1 | 147 | 1 | 147 | 1.17e-70 | 212 |
Find 50 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAAAGCTCTCCCAATAAA+TGG | 0.205932 | 1.3:+44514910 | None:intergenic |
| AATATTGTTCGCCCATTTAT+TGG | 0.207398 | 1.3:-44514922 | MS.gene034955:CDS |
| TCCGAAACTCTCTCTGGGTC+TGG | 0.302087 | 1.3:+44514853 | None:intergenic |
| TGACAATTGCAGGGAGATTT+CGG | 0.324639 | 1.3:-44517589 | MS.gene034955:intron |
| CATCGTGACTAATCTCAAAA+TGG | 0.330451 | 1.3:-44517747 | MS.gene034955:CDS |
| TCTGGGTCTGGGTTCAAGTC+TGG | 0.338635 | 1.3:+44514865 | None:intergenic |
| GTAACAATCTGCGGAGTAAA+TGG | 0.340928 | 1.3:+44517565 | None:intergenic |
| CGTCTATCCGAAACTCTCTC+TGG | 0.345540 | 1.3:+44514847 | None:intergenic |
| TCAGATACAACGCACTTCAT+AGG | 0.356185 | 1.3:-44514113 | None:intergenic |
| GCAAATGCTCCGACATCTCT+TGG | 0.362089 | 1.3:+44516787 | None:intergenic |
| ATATTGTTCGCCCATTTATT+GGG | 0.393276 | 1.3:-44514921 | MS.gene034955:CDS |
| GAAATTTCTACATAATGAAA+TGG | 0.395437 | 1.3:+44516765 | None:intergenic |
| ATGAAAAGAGTGAAAGTTCA+TGG | 0.404231 | 1.3:+44517899 | None:intergenic |
| ACATACTCTTGGGGCATTGT+GGG | 0.433438 | 1.3:+44514813 | None:intergenic |
| CCGAAACTCTCTCTGGGTCT+GGG | 0.440746 | 1.3:+44514854 | None:intergenic |
| TTGTTACTCAAGTACCGCTT+TGG | 0.468205 | 1.3:-44517549 | MS.gene034955:CDS |
| GAACTCACCATGTATGCATC+AGG | 0.471100 | 1.3:+44516617 | None:intergenic |
| CCCAGACCCAGAGAGAGTTT+CGG | 0.471200 | 1.3:-44514854 | MS.gene034955:CDS |
| TTTGGTTGGCAATTGCTCTC+AGG | 0.473747 | 1.3:-44517531 | MS.gene034955:CDS |
| TTGAGGACATCAGAGATGTA+AGG | 0.475567 | 1.3:-44516500 | MS.gene034955:CDS |
| CAACATTCCTGATGCATACA+TGG | 0.483264 | 1.3:-44516624 | MS.gene034955:intron |
| GCTCCATTGTCCCTCCTCAA+TGG | 0.483624 | 1.3:-44517495 | MS.gene034955:CDS |
| GTAAAGCTCTCCCAATAAAT+GGG | 0.485912 | 1.3:+44514911 | None:intergenic |
| TAAAGTTGAAACTGACTTGG+AGG | 0.491249 | 1.3:-44516472 | MS.gene034955:CDS |
| CAAATGCTCCGACATCTCTT+GGG | 0.494044 | 1.3:+44516788 | None:intergenic |
| CAGATACAACGCACTTCATA+GGG | 0.495813 | 1.3:-44514112 | None:intergenic |
| AACATACTCTTGGGGCATTG+TGG | 0.508642 | 1.3:+44514812 | None:intergenic |
| TTTCAAAGAGAAGAGATGGC+TGG | 0.523532 | 1.3:-44517931 | None:intergenic |
| TTCAAAGAGAAGAGATGGCT+GGG | 0.527242 | 1.3:-44517930 | None:intergenic |
| TCATAAAGTTGAAACTGACT+TGG | 0.529908 | 1.3:-44516475 | MS.gene034955:CDS |
| GTCTATCCGAAACTCTCTCT+GGG | 0.530720 | 1.3:+44514848 | None:intergenic |
| ACTGACTTGGAGGCATTCAA+TGG | 0.547053 | 1.3:-44516462 | MS.gene034955:CDS |
| TAAGTTGACACAAGTGTTGG+AGG | 0.551466 | 1.3:-44516823 | MS.gene034955:CDS |
| GGGGCATTGTGGGCAACTTG+TGG | 0.560211 | 1.3:+44514823 | None:intergenic |
| TACTCAAGTACCGCTTTGGT+TGG | 0.563566 | 1.3:-44517545 | MS.gene034955:CDS |
| TGGTCGTACAATAGCTGTGA+AGG | 0.568663 | 1.3:-44516442 | MS.gene034955:intron |
| GAAGGTGAGGTCTCTAATTG+AGG | 0.573692 | 1.3:-44516517 | MS.gene034955:intron |
| CATCCATTGAGGAGGGACAA+TGG | 0.577418 | 1.3:+44517492 | None:intergenic |
| AGATAAGTTGACACAAGTGT+TGG | 0.580530 | 1.3:-44516826 | MS.gene034955:CDS |
| GCGAAACTCCCAAGAGATGT+CGG | 0.605151 | 1.3:-44516796 | MS.gene034955:CDS |
| GCAATTGCTCTCAGGAAGAG+AGG | 0.614416 | 1.3:-44517523 | MS.gene034955:CDS |
| CCTCCTCAATGGATGACTGT+TGG | 0.615572 | 1.3:-44517484 | MS.gene034955:intron |
| CATCGCTGAAGACGAGATTG+TGG | 0.631390 | 1.3:-44517771 | MS.gene034955:CDS |
| ATCAAACAAACATACTCTTG+GGG | 0.651202 | 1.3:+44514804 | None:intergenic |
| TTACCAACAGTCATCCATTG+AGG | 0.655858 | 1.3:+44517481 | None:intergenic |
| CAACAGTCATCCATTGAGGA+GGG | 0.658288 | 1.3:+44517485 | None:intergenic |
| CCAACAGTCATCCATTGAGG+AGG | 0.658541 | 1.3:+44517484 | None:intergenic |
| CTTACAGAGATGAGACAGAG+AGG | 0.676515 | 1.3:+44517722 | None:intergenic |
| GGTACTTGAGTAACAATCTG+CGG | 0.687743 | 1.3:+44517556 | None:intergenic |
| AGAGCAATTGCCAACCAAAG+CGG | 0.692803 | 1.3:+44517535 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTATTTATTTTTTATTCA+AGG | - | chr1.3:44514767-44514786 | MS.gene034955:intron | 10.0% |
| !! | AAAGATAACATAAAAGTAAT+TGG | + | chr1.3:44514749-44514768 | None:intergenic | 15.0% |
| !! | AAATAATGGTTTATACATAA+AGG | + | chr1.3:44515827-44515846 | None:intergenic | 15.0% |
| !! | AACAAGAAATATAAAACAAA+TGG | + | chr1.3:44515020-44515039 | None:intergenic | 15.0% |
| !! | ATTAAATATGAGAAAACAAA+AGG | - | chr1.3:44516114-44516133 | MS.gene034955:intron | 15.0% |
| !! | CACTAAAAATAAAAAATAGA+AGG | + | chr1.3:44515379-44515398 | None:intergenic | 15.0% |
| !! | TATATATATATTCTTCCAAA+TGG | - | chr1.3:44517679-44517698 | MS.gene034955:intron | 15.0% |
| !!! | ATAATTATGTATAACTTGTT+TGG | - | chr1.3:44517751-44517770 | MS.gene034955:CDS | 15.0% |
| !!! | ATATTGAATTTTTACATCTT+TGG | + | chr1.3:44517553-44517572 | None:intergenic | 15.0% |
| !!! | ATATTTCTATTATAAAAGAG+AGG | + | chr1.3:44516495-44516514 | None:intergenic | 15.0% |
| !!! | TATTTCTATTATAAAAGAGA+GGG | + | chr1.3:44516494-44516513 | None:intergenic | 15.0% |
| !!! | TGACGTTTTTTTTATATATA+AGG | - | chr1.3:44515672-44515691 | MS.gene034955:intron | 15.0% |
| !!! | TGTATTATGTTTTTTTTTGA+AGG | - | chr1.3:44514384-44514403 | MS.gene034955:intron | 15.0% |
| !!! | TGTATTTTATTGAATGATAA+TGG | - | chr1.3:44516312-44516331 | MS.gene034955:intron | 15.0% |
| !!! | TTAGTTGTTTTTTTTTAACA+AGG | - | chr1.3:44516721-44516740 | MS.gene034955:intron | 15.0% |
| !!! | TTGTATTTTAATTCTGATTT+GGG | - | chr1.3:44514954-44514973 | MS.gene034955:intron | 15.0% |
| !!! | TTTTGTAATCAAATCAAATA+CGG | + | chr1.3:44515769-44515788 | None:intergenic | 15.0% |
| !! | AATAACAACATAGTTGTATA+TGG | + | chr1.3:44514185-44514204 | None:intergenic | 20.0% |
| !! | ACATAATGTTGTGAAAAATT+AGG | - | chr1.3:44514627-44514646 | MS.gene034955:intron | 20.0% |
| !! | ATTATTTACACTTGAATAGA+AGG | - | chr1.3:44515840-44515859 | MS.gene034955:intron | 20.0% |
| !! | CATAATGTTGTGAAAAATTA+GGG | - | chr1.3:44514628-44514647 | MS.gene034955:intron | 20.0% |
| !! | GAAATTTCTACATAATGAAA+TGG | + | chr1.3:44515268-44515287 | None:intergenic | 20.0% |
| !! | GATTAAAAATTTATCTGCAA+TGG | - | chr1.3:44517080-44517099 | MS.gene034955:intron | 20.0% |
| !! | TTCTATTCAAGTGTAAATAA+TGG | + | chr1.3:44515841-44515860 | None:intergenic | 20.0% |
| !! | TTTCTCATATTTAATTACAG+TGG | + | chr1.3:44516109-44516128 | None:intergenic | 20.0% |
| !! | TTTGTAATCAAATCAAATAC+GGG | + | chr1.3:44515768-44515787 | None:intergenic | 20.0% |
| !!! | AATAAGCATAATTGGATTTT+AGG | - | chr1.3:44514832-44514851 | MS.gene034955:CDS | 20.0% |
| !!! | CAAACTAACAAATTTTAAAC+TGG | + | chr1.3:44515140-44515159 | None:intergenic | 20.0% |
| !!! | CTTGTATTTTAATTCTGATT+TGG | - | chr1.3:44514953-44514972 | MS.gene034955:intron | 20.0% |
| !!! | GAACTTTCTTTAAAATAATC+TGG | + | chr1.3:44516087-44516106 | None:intergenic | 20.0% |
| ! | ACAATTTGCATCATAATTCT+TGG | - | chr1.3:44517048-44517067 | MS.gene034955:intron | 25.0% |
| ! | ATATATTCTTCCAAATGGAA+TGG | - | chr1.3:44517684-44517703 | MS.gene034955:intron | 25.0% |
| ! | ATATCAAACAAACATACTCT+TGG | + | chr1.3:44517231-44517250 | None:intergenic | 25.0% |
| ! | ATATTGTTAGAAAGATGGTT+AGG | + | chr1.3:44516445-44516464 | None:intergenic | 25.0% |
| ! | ATTACTGCAATAAGCATAAT+TGG | - | chr1.3:44514824-44514843 | MS.gene034955:CDS | 25.0% |
| ! | ATTCAGAATCTAATCTATTC+TGG | + | chr1.3:44516204-44516223 | None:intergenic | 25.0% |
| ! | CCATATCTCTTTCATATATT+AGG | - | chr1.3:44516240-44516259 | MS.gene034955:intron | 25.0% |
| ! | CCTAATATATGAAAGAGATA+TGG | + | chr1.3:44516243-44516262 | None:intergenic | 25.0% |
| ! | GAGAAATATTGTTAGAAAGA+TGG | + | chr1.3:44516450-44516469 | None:intergenic | 25.0% |
| ! | GGAATAGAACTTAAAAAATC+AGG | + | chr1.3:44516937-44516956 | None:intergenic | 25.0% |
| ! | GTAATTGGAACAAAAATGTA+TGG | + | chr1.3:44514734-44514753 | None:intergenic | 25.0% |
| ! | TAGAAATATCCCTAAAATCA+AGG | - | chr1.3:44516506-44516525 | MS.gene034955:CDS | 25.0% |
| ! | TATCAAACAAACATACTCTT+GGG | + | chr1.3:44517230-44517249 | None:intergenic | 25.0% |
| ! | TGAAAAATTAGGGATAAATG+TGG | - | chr1.3:44514638-44514657 | MS.gene034955:intron | 25.0% |
| ! | TTTGGATGTAAAAAATGAGT+GGG | + | chr1.3:44517535-44517554 | None:intergenic | 25.0% |
| !! | AAATTTTTCTGTCCTTTCAA+TGG | - | chr1.3:44515073-44515092 | MS.gene034955:intron | 25.0% |
| !! | ATGTCATTTGTATAGACTTT+GGG | - | chr1.3:44516823-44516842 | MS.gene034955:CDS | 25.0% |
| !! | GAGATATTTCCTTGATTTTA+GGG | + | chr1.3:44516518-44516537 | None:intergenic | 25.0% |
| !! | GATGAAAGACAAAAATGTTT+TGG | - | chr1.3:44517587-44517606 | MS.gene034955:intron | 25.0% |
| !! | TGAGATATTTCCTTGATTTT+AGG | + | chr1.3:44516519-44516538 | None:intergenic | 25.0% |
| !! | TTCTTTTAATGACAATTGCA+GGG | - | chr1.3:44514432-44514451 | MS.gene034955:intron | 25.0% |
| !! | TTTCTTTTAATGACAATTGC+AGG | - | chr1.3:44514431-44514450 | MS.gene034955:intron | 25.0% |
| !!! | TATTTTTTTTCCCCACAAAA+CGG | - | chr1.3:44514583-44514602 | MS.gene034955:intron | 25.0% |
| !!! | TCCTTTTTTTTAGAGTGTTT+TGG | - | chr1.3:44516954-44516973 | MS.gene034955:intron | 25.0% |
| AATATTGTTCGCCCATTTAT+TGG | - | chr1.3:44517108-44517127 | MS.gene034955:intron | 30.0% | |
| AGTTACGTAATTAGGTGATA+AGG | - | chr1.3:44516756-44516775 | MS.gene034955:CDS | 30.0% | |
| ATATTGTTCGCCCATTTATT+GGG | - | chr1.3:44517109-44517128 | MS.gene034955:intron | 30.0% | |
| ATCAAACAAACATACTCTTG+GGG | + | chr1.3:44517229-44517248 | None:intergenic | 30.0% | |
| ATGAAAAGAGTGAAAGTTCA+TGG | + | chr1.3:44514134-44514153 | None:intergenic | 30.0% | |
| CTAGTTACAAACAGATGTTA+TGG | + | chr1.3:44515186-44515205 | None:intergenic | 30.0% | |
| CTTTGGATGTAAAAAATGAG+TGG | + | chr1.3:44517536-44517555 | None:intergenic | 30.0% | |
| GAATTCGTAGTTACGTAATT+AGG | - | chr1.3:44516748-44516767 | MS.gene034955:CDS | 30.0% | |
| GACCTATCAAATGTAAACAT+TGG | + | chr1.3:44516656-44516675 | None:intergenic | 30.0% | |
| GTGGGGAAAAAAAATAAGAA+AGG | + | chr1.3:44514579-44514598 | None:intergenic | 30.0% | |
| GTTACGTAATTAGGTGATAA+GGG | - | chr1.3:44516757-44516776 | MS.gene034955:CDS | 30.0% | |
| TCATAAAGTTGAAACTGACT+TGG | - | chr1.3:44515555-44515574 | MS.gene034955:intron | 30.0% | |
| TCATTTGTCTCTAAACTTAC+TGG | + | chr1.3:44515306-44515325 | None:intergenic | 30.0% | |
| TGCCAATGTTTACATTTGAT+AGG | - | chr1.3:44516651-44516670 | MS.gene034955:intron | 30.0% | |
| TTAGAGATACAATTGTCTTG+AGG | + | chr1.3:44516594-44516613 | None:intergenic | 30.0% | |
| TTTATACTCGATTTCTGCAA+AGG | - | chr1.3:44517489-44517508 | MS.gene034955:CDS | 30.0% | |
| ! | AGGTATAGATACATTTTCAC+TGG | - | chr1.3:44517509-44517528 | MS.gene034955:CDS | 30.0% |
| ! | ATATCTCAACTGACTCTATT+TGG | - | chr1.3:44516531-44516550 | MS.gene034955:intron | 30.0% |
| ! | CATGTCATTTGTATAGACTT+TGG | - | chr1.3:44516822-44516841 | MS.gene034955:CDS | 30.0% |
| ! | GCCAAAACACTCTAAAAAAA+AGG | + | chr1.3:44516958-44516977 | None:intergenic | 30.0% |
| ! | TACCTATTTGAGAAGTACAT+GGG | + | chr1.3:44517848-44517867 | None:intergenic | 30.0% |
| ! | TATCTCAACTGACTCTATTT+GGG | - | chr1.3:44516532-44516551 | MS.gene034955:intron | 30.0% |
| ! | TTTGCTTATTTCTCTTGTGA+AGG | - | chr1.3:44515495-44515514 | MS.gene034955:intron | 30.0% |
| !! | AACTTGATTTTGGTCTATTC+TGG | - | chr1.3:44516004-44516023 | MS.gene034955:intron | 30.0% |
| !! | CTCTAAAAAAAAGTGTCACT+AGG | - | chr1.3:44516608-44516627 | MS.gene034955:intron | 30.0% |
| !! | CTTTAAAATAATCTGGTAGC+AGG | + | chr1.3:44516080-44516099 | None:intergenic | 30.0% |
| !! | GGTATATTTCTGGAAATTTC+TGG | + | chr1.3:44515455-44515474 | None:intergenic | 30.0% |
| !! | TTTAATTCTGATTTGGGCTT+AGG | - | chr1.3:44514960-44514979 | MS.gene034955:intron | 30.0% |
| !!! | AACAATCGGAATGTTTTAGT+TGG | - | chr1.3:44514699-44514718 | MS.gene034955:intron | 30.0% |
| !!! | AATGTTTTAGTTGGTGGATA+AGG | - | chr1.3:44514708-44514727 | MS.gene034955:intron | 30.0% |
| AAAATCCTGCGGTATATTTC+TGG | + | chr1.3:44515465-44515484 | None:intergenic | 35.0% | |
| AATGCAGAGGATTTGATTCT+TGG | + | chr1.3:44516175-44516194 | None:intergenic | 35.0% | |
| AATGTTGTGTTTACGAGGAT+TGG | + | chr1.3:44515912-44515931 | None:intergenic | 35.0% | |
| AATTTCCAGAAATATACCGC+AGG | - | chr1.3:44515457-44515476 | MS.gene034955:intron | 35.0% | |
| ACCTTCTGCAATCTAACAAT+CGG | - | chr1.3:44514685-44514704 | MS.gene034955:intron | 35.0% | |
| AGACCAAAATCAAGTTTACG+AGG | + | chr1.3:44516000-44516019 | None:intergenic | 35.0% | |
| ATGCAGAGGATTTGATTCTT+GGG | + | chr1.3:44516174-44516193 | None:intergenic | 35.0% | |
| CATCGTGACTAATCTCAAAA+TGG | - | chr1.3:44514283-44514302 | MS.gene034955:intron | 35.0% | |
| CATGAATCATTTCGTCAACA+GGG | - | chr1.3:44516886-44516905 | MS.gene034955:intron | 35.0% | |
| CCTTCTACATAGAGTTCAAA+AGG | + | chr1.3:44515970-44515989 | None:intergenic | 35.0% | |
| CTATTATAAAAGAGAGGGCA+GGG | + | chr1.3:44516489-44516508 | None:intergenic | 35.0% | |
| GACATATGCTTGCAGTTAAA+GGG | + | chr1.3:44514793-44514812 | None:intergenic | 35.0% | |
| GGTCAGTTTATGTTGTTAAG+AGG | - | chr1.3:44516672-44516691 | MS.gene034955:intron | 35.0% | |
| GGTGGAATAACAGAAATGAA+AGG | - | chr1.3:44516358-44516377 | MS.gene034955:intron | 35.0% | |
| GTAAAGCTCTCCCAATAAAT+GGG | + | chr1.3:44517122-44517141 | None:intergenic | 35.0% | |
| GTGCAAAGGACATAAAAGTT+TGG | - | chr1.3:44516136-44516155 | MS.gene034955:intron | 35.0% | |
| TATTATAAAAGAGAGGGCAG+GGG | + | chr1.3:44516488-44516507 | None:intergenic | 35.0% | |
| TCTATTATAAAAGAGAGGGC+AGG | + | chr1.3:44516490-44516509 | None:intergenic | 35.0% | |
| TCTTATAGGACTCTGTGTTT+AGG | + | chr1.3:44516564-44516583 | None:intergenic | 35.0% | |
| TGACATATGCTTGCAGTTAA+AGG | + | chr1.3:44514794-44514813 | None:intergenic | 35.0% | |
| TGCATGAAAACCATTCCATT+TGG | + | chr1.3:44517697-44517716 | None:intergenic | 35.0% | |
| TGTAAAGCTCTCCCAATAAA+TGG | + | chr1.3:44517123-44517142 | None:intergenic | 35.0% | |
| ! | ACTTTCACTCTTTTCATCAG+AGG | - | chr1.3:44514137-44514156 | MS.gene034955:intron | 35.0% |
| ! | AGATAAGTTGACACAAGTGT+TGG | - | chr1.3:44515204-44515223 | MS.gene034955:intron | 35.0% |
| ! | CAATTGTAAACCGTTTTGTG+GGG | + | chr1.3:44514596-44514615 | None:intergenic | 35.0% |
| ! | CCTTTTGAACTCTATGTAGA+AGG | - | chr1.3:44515967-44515986 | MS.gene034955:intron | 35.0% |
| ! | CTACCTATTTGAGAAGTACA+TGG | + | chr1.3:44517849-44517868 | None:intergenic | 35.0% |
| ! | GCAATTGTAAACCGTTTTGT+GGG | + | chr1.3:44514597-44514616 | None:intergenic | 35.0% |
| ! | TGAGAAAACAAAAGGTGCAA+AGG | - | chr1.3:44516122-44516141 | MS.gene034955:intron | 35.0% |
| ! | TGCAATTGTAAACCGTTTTG+TGG | + | chr1.3:44514598-44514617 | None:intergenic | 35.0% |
| ! | TTATTTCTCTTGTGAAGGTG+AGG | - | chr1.3:44515500-44515519 | MS.gene034955:intron | 35.0% |
| !! | AATGATAATGGTGAGCTCAA+AGG | - | chr1.3:44516324-44516343 | MS.gene034955:intron | 35.0% |
| !! | ATTTTGACATGACAAGACAG+TGG | + | chr1.3:44517376-44517395 | None:intergenic | 35.0% |
| !! | GGATAAATGTGGTTGATTTG+TGG | - | chr1.3:44514649-44514668 | MS.gene034955:intron | 35.0% |
| !! | GTATAACTTGTTTGGCAAGA+AGG | - | chr1.3:44517759-44517778 | MS.gene034955:CDS | 35.0% |
| !! | TAAAGTTGAAACTGACTTGG+AGG | - | chr1.3:44515558-44515577 | MS.gene034955:intron | 35.0% |
| !!! | AATCGGAATGTTTTAGTTGG+TGG | - | chr1.3:44514702-44514721 | MS.gene034955:intron | 35.0% |
| !!! | ATTGGTTTTGCCATCCAAAA+AGG | + | chr1.3:44515894-44515913 | None:intergenic | 35.0% |
| AACACAACATTCATGGACCT+AGG | - | chr1.3:44515921-44515940 | MS.gene034955:intron | 40.0% | |
| ACACTTGAATAGAAGGCAAG+CGG | - | chr1.3:44515847-44515866 | MS.gene034955:intron | 40.0% | |
| AGCATCAGAAGAAAATCCTG+CGG | + | chr1.3:44515476-44515495 | None:intergenic | 40.0% | |
| AGCTCAAAGGCTCTACAATA+TGG | - | chr1.3:44516337-44516356 | MS.gene034955:intron | 40.0% | |
| ATAGCAATGTCATGTCTCCT+AGG | + | chr1.3:44515941-44515960 | None:intergenic | 40.0% | |
| CAACATTCCTGATGCATACA+TGG | - | chr1.3:44515406-44515425 | MS.gene034955:intron | 40.0% | |
| CCATGAATCATTTCGTCAAC+AGG | - | chr1.3:44516885-44516904 | MS.gene034955:intron | 40.0% | |
| CCATGAATGTTGTGTTTACG+AGG | + | chr1.3:44515917-44515936 | None:intergenic | 40.0% | |
| CCTCGTAAACACAACATTCA+TGG | - | chr1.3:44515914-44515933 | MS.gene034955:intron | 40.0% | |
| CCTGTTGACGAAATGATTCA+TGG | + | chr1.3:44516888-44516907 | None:intergenic | 40.0% | |
| CGCACATTGCAAAACAAAAG+TGG | + | chr1.3:44514861-44514880 | None:intergenic | 40.0% | |
| CTCCCATGTACTTCTCAAAT+AGG | - | chr1.3:44517843-44517862 | MS.gene034955:intron | 40.0% | |
| CTTGAGGCTTGCATTCTTAT+AGG | + | chr1.3:44516578-44516597 | None:intergenic | 40.0% | |
| GACGCTGCCTATAAATATCA+GGG | - | chr1.3:44516779-44516798 | MS.gene034955:CDS | 40.0% | |
| GCTTATGACTAGTAATCAGC+TGG | - | chr1.3:44515043-44515062 | MS.gene034955:intron | 40.0% | |
| GGTACTTGAGTAACAATCTG+CGG | + | chr1.3:44514477-44514496 | None:intergenic | 40.0% | |
| GTAACAATCTGCGGAGTAAA+TGG | + | chr1.3:44514468-44514487 | None:intergenic | 40.0% | |
| GTACAGTGGTTGTGAATATC+TGG | - | chr1.3:44515634-44515653 | MS.gene034955:intron | 40.0% | |
| GTGCGTTGTATCTGAAGATT+TGG | + | chr1.3:44517912-44517931 | None:intergenic | 40.0% | |
| TAGACTCTCCAAACACCAAA+AGG | + | chr1.3:44516849-44516868 | None:intergenic | 40.0% | |
| TCAAAGGCTCTACAATATGG+TGG | - | chr1.3:44516340-44516359 | MS.gene034955:intron | 40.0% | |
| TCCACATGTAGACCATTGAA+AGG | + | chr1.3:44515088-44515107 | None:intergenic | 40.0% | |
| TCCGATTGTTAGATTGCAGA+AGG | + | chr1.3:44514689-44514708 | None:intergenic | 40.0% | |
| TCCTTTCAATGGTCTACATG+TGG | - | chr1.3:44515084-44515103 | MS.gene034955:intron | 40.0% | |
| TGACAATTGCAGGGAGATTT+CGG | - | chr1.3:44514441-44514460 | MS.gene034955:intron | 40.0% | |
| TGGGGATCCCTGATATTTAT+AGG | + | chr1.3:44516789-44516808 | None:intergenic | 40.0% | |
| TTACCAACAGTCATCCATTG+AGG | + | chr1.3:44514552-44514571 | None:intergenic | 40.0% | |
| TTGAGGACATCAGAGATGTA+AGG | - | chr1.3:44515530-44515549 | MS.gene034955:intron | 40.0% | |
| ! | AAAGTCTCGAATCCTTTTGG+CGG | - | chr1.3:44515612-44515631 | MS.gene034955:intron | 40.0% |
| ! | CAGCCTCGTAAACTTGATTT+TGG | - | chr1.3:44515994-44516013 | MS.gene034955:intron | 40.0% |
| ! | GGTAAAGTCTCGAATCCTTT+TGG | - | chr1.3:44515609-44515628 | MS.gene034955:intron | 40.0% |
| ! | TCTTTTCATCAGAGGAGGTA+TGG | - | chr1.3:44514145-44514164 | MS.gene034955:intron | 40.0% |
| ! | TGTATAGACTTTGGGCCTTT+TGG | - | chr1.3:44516831-44516850 | MS.gene034955:intron | 40.0% |
| ! | TTCACTCTTTTCATCAGAGG+AGG | - | chr1.3:44514140-44514159 | MS.gene034955:intron | 40.0% |
| ! | TTGTTACTCAAGTACCGCTT+TGG | - | chr1.3:44514481-44514500 | MS.gene034955:intron | 40.0% |
| !! | ATTTTGGTCTATTCTGGCAG+AGG | - | chr1.3:44516010-44516029 | MS.gene034955:intron | 40.0% |
| !! | GCTTGTATTTGCTTTTGCAG+AGG | - | chr1.3:44517717-44517736 | MS.gene034955:intron | 40.0% |
| !! | TAAGTTGACACAAGTGTTGG+AGG | - | chr1.3:44515207-44515226 | MS.gene034955:intron | 40.0% |
| ACATGATAGATCGCTCTCTG+GGG | + | chr1.3:44516807-44516826 | None:intergenic | 45.0% | |
| AGAGCAATTGCCAACCAAAG+CGG | + | chr1.3:44514498-44514517 | None:intergenic | 45.0% | |
| AGAGTATGAACACTCCTACC+AGG | - | chr1.3:44516388-44516407 | MS.gene034955:intron | 45.0% | |
| ATTCTGGATGCAGAATGCAG+AGG | + | chr1.3:44516188-44516207 | None:intergenic | 45.0% | |
| ATTCTGGCAGAGGTAGGTTT+AGG | - | chr1.3:44516020-44516039 | MS.gene034955:intron | 45.0% | |
| CAAATGCTCCGACATCTCTT+GGG | + | chr1.3:44515245-44515264 | None:intergenic | 45.0% | |
| CAACAGTCATCCATTGAGGA+GGG | + | chr1.3:44514548-44514567 | None:intergenic | 45.0% | |
| CACTTGAATAGAAGGCAAGC+GGG | - | chr1.3:44515848-44515867 | MS.gene034955:intron | 45.0% | |
| CTTACAGAGATGAGACAGAG+AGG | + | chr1.3:44514311-44514330 | None:intergenic | 45.0% | |
| GAACTCACCATGTATGCATC+AGG | + | chr1.3:44515416-44515435 | None:intergenic | 45.0% | |
| GAAGGTGAGGTCTCTAATTG+AGG | - | chr1.3:44515513-44515532 | MS.gene034955:intron | 45.0% | |
| GACATGATAGATCGCTCTCT+GGG | + | chr1.3:44516808-44516827 | None:intergenic | 45.0% | |
| GAGTATGAACACTCCTACCA+GGG | - | chr1.3:44516389-44516408 | MS.gene034955:intron | 45.0% | |
| GGACGCTGCCTATAAATATC+AGG | - | chr1.3:44516778-44516797 | MS.gene034955:CDS | 45.0% | |
| GGAGAGATTTCTCTCTGGTT+AGG | + | chr1.3:44516424-44516443 | None:intergenic | 45.0% | |
| GGCTGGAAAATACATGCTGT+TGG | - | chr1.3:44516994-44517013 | MS.gene034955:intron | 45.0% | |
| GGTTAGGAGAGATTTCTCTC+TGG | + | chr1.3:44516429-44516448 | None:intergenic | 45.0% | |
| GTCTATCCGAAACTCTCTCT+GGG | + | chr1.3:44517185-44517204 | None:intergenic | 45.0% | |
| TGAAGATTTGGAGAGAACGC+TGG | + | chr1.3:44517900-44517919 | None:intergenic | 45.0% | |
| TGACATGATAGATCGCTCTC+TGG | + | chr1.3:44516809-44516828 | None:intergenic | 45.0% | |
| TGCCATCCAAAAAGGTCTAG+CGG | + | chr1.3:44515886-44515905 | None:intergenic | 45.0% | |
| TGGTCGTACAATAGCTGTGA+AGG | - | chr1.3:44515588-44515607 | MS.gene034955:intron | 45.0% | |
| TTTGGTTGGCAATTGCTCTC+AGG | - | chr1.3:44514499-44514518 | MS.gene034955:intron | 45.0% | |
| ! | AACTGACTCTATTTGGGCCA+AGG | - | chr1.3:44516538-44516557 | MS.gene034955:intron | 45.0% |
| ! | TACTCAAGTACCGCTTTGGT+TGG | - | chr1.3:44514485-44514504 | MS.gene034955:intron | 45.0% |
| ! | TTGGCGTGTGACGGAAAATT+TGG | - | chr1.3:44516973-44516992 | MS.gene034955:intron | 45.0% |
| !! | AACATACTCTTGGGGCATTG+TGG | + | chr1.3:44517221-44517240 | None:intergenic | 45.0% |
| !! | ACATACTCTTGGGGCATTGT+GGG | + | chr1.3:44517220-44517239 | None:intergenic | 45.0% |
| !! | ACTGACTTGGAGGCATTCAA+TGG | - | chr1.3:44515568-44515587 | MS.gene034955:intron | 45.0% |
| !! | TGGTAGGAGTGTTCATACTC+TGG | + | chr1.3:44516389-44516408 | None:intergenic | 45.0% |
| !!! | ACTTTGGGCCTTTTGGTGTT+TGG | - | chr1.3:44516838-44516857 | MS.gene034955:intron | 45.0% |
| !!! | TAGAGTGTTTTGGCGTGTGA+CGG | - | chr1.3:44516964-44516983 | MS.gene034955:intron | 45.0% |
| ACAACCACTGTACCGCCAAA+AGG | + | chr1.3:44515627-44515646 | None:intergenic | 50.0% | |
| AGGACTCTGTGTTTAGGCCT+TGG | + | chr1.3:44516558-44516577 | None:intergenic | 50.0% | |
| CAGCGATGAACTCAAGCTAG+TGG | + | chr1.3:44514247-44514266 | None:intergenic | 50.0% | |
| CATCCATTGAGGAGGGACAA+TGG | + | chr1.3:44514541-44514560 | None:intergenic | 50.0% | |
| CATCGCTGAAGACGAGATTG+TGG | - | chr1.3:44514259-44514278 | MS.gene034955:intron | 50.0% | |
| CCAACAGTCATCCATTGAGG+AGG | + | chr1.3:44514549-44514568 | None:intergenic | 50.0% | |
| CCTCCTCAATGGATGACTGT+TGG | - | chr1.3:44514546-44514565 | MS.gene034955:intron | 50.0% | |
| CGTCTATCCGAAACTCTCTC+TGG | + | chr1.3:44517186-44517205 | None:intergenic | 50.0% | |
| GCAAATGCTCCGACATCTCT+TGG | + | chr1.3:44515246-44515265 | None:intergenic | 50.0% | |
| GCAATTGCTCTCAGGAAGAG+AGG | - | chr1.3:44514507-44514526 | MS.gene034955:intron | 50.0% | |
| GCGAAACTCCCAAGAGATGT+CGG | - | chr1.3:44515234-44515253 | MS.gene034955:intron | 50.0% | |
| TGGTCTATTCTGGCAGAGGT+AGG | - | chr1.3:44516014-44516033 | MS.gene034955:intron | 50.0% | |
| ! | CGTGTGACGGAAAATTTGGC+TGG | - | chr1.3:44516977-44516996 | MS.gene034955:intron | 50.0% |
| ! | GAATCCTTTTGGCGGTACAG+TGG | - | chr1.3:44515620-44515639 | MS.gene034955:intron | 50.0% |
| AGAGGGCAGGGGATTGAGTA+AGG | + | chr1.3:44516477-44516496 | None:intergenic | 55.0% | |
| CCCAGACCCAGAGAGAGTTT+CGG | - | chr1.3:44517176-44517195 | MS.gene034955:intron | 55.0% | |
| CCGAAACTCTCTCTGGGTCT+GGG | + | chr1.3:44517179-44517198 | None:intergenic | 55.0% | |
| GCTCCATTGTCCCTCCTCAA+TGG | - | chr1.3:44514535-44514554 | MS.gene034955:intron | 55.0% | |
| TCCGAAACTCTCTCTGGGTC+TGG | + | chr1.3:44517180-44517199 | None:intergenic | 55.0% | |
| TCTGGGTCTGGGTTCAAGTC+TGG | + | chr1.3:44517168-44517187 | None:intergenic | 55.0% | |
| ! | CGCCGCTAGACCTTTTTGGA+TGG | - | chr1.3:44515881-44515900 | MS.gene034955:intron | 55.0% |
| ! | GTTGCGCCGCTAGACCTTTT+TGG | - | chr1.3:44515877-44515896 | MS.gene034955:intron | 55.0% |
| !! | TAGGAGCATTGTGCCCTGGT+AGG | + | chr1.3:44516405-44516424 | None:intergenic | 55.0% |
| !! | TGGTTAGGAGCATTGTGCCC+TGG | + | chr1.3:44516409-44516428 | None:intergenic | 55.0% |
| !! | GGGGCATTGTGGGCAACTTG+TGG | + | chr1.3:44517210-44517229 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 44514114 | 44517938 | 44514114 | ID=MS.gene034955 |
| chr1.3 | mRNA | 44514114 | 44517938 | 44514114 | ID=MS.gene034955.t1;Parent=MS.gene034955 |
| chr1.3 | exon | 44517891 | 44517938 | 44517891 | ID=MS.gene034955.t1.exon1;Parent=MS.gene034955.t1 |
| chr1.3 | CDS | 44517891 | 44517938 | 44517891 | ID=cds.MS.gene034955.t1;Parent=MS.gene034955.t1 |
| chr1.3 | exon | 44517727 | 44517801 | 44517727 | ID=MS.gene034955.t1.exon2;Parent=MS.gene034955.t1 |
| chr1.3 | CDS | 44517727 | 44517801 | 44517727 | ID=cds.MS.gene034955.t1;Parent=MS.gene034955.t1 |
| chr1.3 | exon | 44517485 | 44517599 | 44517485 | ID=MS.gene034955.t1.exon3;Parent=MS.gene034955.t1 |
| chr1.3 | CDS | 44517485 | 44517599 | 44517485 | ID=cds.MS.gene034955.t1;Parent=MS.gene034955.t1 |
| chr1.3 | exon | 44516747 | 44516846 | 44516747 | ID=MS.gene034955.t1.exon4;Parent=MS.gene034955.t1 |
| chr1.3 | CDS | 44516747 | 44516846 | 44516747 | ID=cds.MS.gene034955.t1;Parent=MS.gene034955.t1 |
| chr1.3 | exon | 44516625 | 44516655 | 44516625 | ID=MS.gene034955.t1.exon5;Parent=MS.gene034955.t1 |
| chr1.3 | CDS | 44516625 | 44516655 | 44516625 | ID=cds.MS.gene034955.t1;Parent=MS.gene034955.t1 |
| chr1.3 | exon | 44516443 | 44516535 | 44516443 | ID=MS.gene034955.t1.exon6;Parent=MS.gene034955.t1 |
| chr1.3 | CDS | 44516443 | 44516535 | 44516443 | ID=cds.MS.gene034955.t1;Parent=MS.gene034955.t1 |
| chr1.3 | exon | 44514819 | 44514971 | 44514819 | ID=MS.gene034955.t1.exon7;Parent=MS.gene034955.t1 |
| chr1.3 | CDS | 44514819 | 44514971 | 44514819 | ID=cds.MS.gene034955.t1;Parent=MS.gene034955.t1 |
| chr1.3 | exon | 44514114 | 44514131 | 44514114 | ID=MS.gene034955.t1.exon8;Parent=MS.gene034955.t1 |
| chr1.3 | CDS | 44514114 | 44514131 | 44514114 | ID=cds.MS.gene034955.t1;Parent=MS.gene034955.t1 |
| Gene Sequence |
| Protein sequence |
